Multiple sequence alignment - TraesCS3B01G344900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G344900 chr3B 100.000 3234 0 0 1 3234 554647474 554650707 0.000000e+00 5973
1 TraesCS3B01G344900 chr3B 91.639 598 43 5 2640 3233 732059596 732060190 0.000000e+00 821
2 TraesCS3B01G344900 chr3A 89.615 1560 126 22 722 2270 564346999 564345465 0.000000e+00 1951
3 TraesCS3B01G344900 chr3A 89.456 588 33 11 1 588 564347612 564347054 0.000000e+00 715
4 TraesCS3B01G344900 chr3D 92.801 1278 83 7 1000 2277 424655383 424656651 0.000000e+00 1842
5 TraesCS3B01G344900 chr3D 86.179 615 54 17 1 608 424653371 424653961 1.270000e-178 636
6 TraesCS3B01G344900 chr6D 89.332 1453 129 13 832 2269 457010403 457011844 0.000000e+00 1801
7 TraesCS3B01G344900 chr5D 91.909 1273 86 6 1000 2272 547262166 547260911 0.000000e+00 1764
8 TraesCS3B01G344900 chr7B 91.946 596 41 5 2641 3233 585918566 585919157 0.000000e+00 828
9 TraesCS3B01G344900 chr7B 91.540 591 47 3 2643 3233 684146740 684147327 0.000000e+00 811
10 TraesCS3B01G344900 chr5B 91.892 592 46 2 2643 3233 691521135 691520545 0.000000e+00 826
11 TraesCS3B01G344900 chr5B 91.290 597 42 9 2641 3233 641931070 641930480 0.000000e+00 806
12 TraesCS3B01G344900 chr2B 91.667 600 38 7 2641 3234 42960380 42960973 0.000000e+00 821
13 TraesCS3B01G344900 chr6B 91.304 598 45 7 2641 3233 66982627 66982032 0.000000e+00 809
14 TraesCS3B01G344900 chr1B 91.290 597 42 6 2643 3233 565748497 565749089 0.000000e+00 806
15 TraesCS3B01G344900 chr4D 91.246 594 47 4 2643 3233 231204172 231204763 0.000000e+00 804


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G344900 chr3B 554647474 554650707 3233 False 5973 5973 100.0000 1 3234 1 chr3B.!!$F1 3233
1 TraesCS3B01G344900 chr3B 732059596 732060190 594 False 821 821 91.6390 2640 3233 1 chr3B.!!$F2 593
2 TraesCS3B01G344900 chr3A 564345465 564347612 2147 True 1333 1951 89.5355 1 2270 2 chr3A.!!$R1 2269
3 TraesCS3B01G344900 chr3D 424653371 424656651 3280 False 1239 1842 89.4900 1 2277 2 chr3D.!!$F1 2276
4 TraesCS3B01G344900 chr6D 457010403 457011844 1441 False 1801 1801 89.3320 832 2269 1 chr6D.!!$F1 1437
5 TraesCS3B01G344900 chr5D 547260911 547262166 1255 True 1764 1764 91.9090 1000 2272 1 chr5D.!!$R1 1272
6 TraesCS3B01G344900 chr7B 585918566 585919157 591 False 828 828 91.9460 2641 3233 1 chr7B.!!$F1 592
7 TraesCS3B01G344900 chr7B 684146740 684147327 587 False 811 811 91.5400 2643 3233 1 chr7B.!!$F2 590
8 TraesCS3B01G344900 chr5B 691520545 691521135 590 True 826 826 91.8920 2643 3233 1 chr5B.!!$R2 590
9 TraesCS3B01G344900 chr5B 641930480 641931070 590 True 806 806 91.2900 2641 3233 1 chr5B.!!$R1 592
10 TraesCS3B01G344900 chr2B 42960380 42960973 593 False 821 821 91.6670 2641 3234 1 chr2B.!!$F1 593
11 TraesCS3B01G344900 chr6B 66982032 66982627 595 True 809 809 91.3040 2641 3233 1 chr6B.!!$R1 592
12 TraesCS3B01G344900 chr1B 565748497 565749089 592 False 806 806 91.2900 2643 3233 1 chr1B.!!$F1 590
13 TraesCS3B01G344900 chr4D 231204172 231204763 591 False 804 804 91.2460 2643 3233 1 chr4D.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 205 0.037447 AGAGCTGGAGGGAAAGCAAC 59.963 55.0 0.0 0.0 42.06 4.17 F
458 466 0.099082 TTTCGCTTTTGTTTCGCCGT 59.901 45.0 0.0 0.0 0.00 5.68 F
1902 3036 0.107643 TGTTCATCGCCTCCACAACA 59.892 50.0 0.0 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 2207 0.108804 AGCACCGATCGATGACGTTT 60.109 50.000 15.33 0.0 40.69 3.60 R
2131 3268 0.332632 ATGCCTGGTGCCTGTTGTAT 59.667 50.000 0.00 0.0 40.16 2.29 R
3099 4259 2.710902 CGACCACTCCATCGCCTGA 61.711 63.158 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.205893 GGTAGTCTGACAGGAAGCAGG 59.794 57.143 10.88 0.00 33.05 4.85
145 146 0.108615 AGTACACCACGATGCTCAGC 60.109 55.000 0.00 0.00 0.00 4.26
164 165 2.658707 GACAGCACCGTTCACGAGC 61.659 63.158 0.00 4.85 43.02 5.03
169 170 4.052229 ACCGTTCACGAGCGAGGG 62.052 66.667 4.77 0.00 43.02 4.30
185 191 3.386237 GGCACCCAGACGAGAGCT 61.386 66.667 0.00 0.00 0.00 4.09
186 192 2.125753 GCACCCAGACGAGAGCTG 60.126 66.667 0.00 0.00 35.80 4.24
191 197 3.205395 CAGACGAGAGCTGGAGGG 58.795 66.667 0.00 0.00 33.55 4.30
192 198 1.379176 CAGACGAGAGCTGGAGGGA 60.379 63.158 0.00 0.00 33.55 4.20
193 199 0.967887 CAGACGAGAGCTGGAGGGAA 60.968 60.000 0.00 0.00 33.55 3.97
194 200 0.251832 AGACGAGAGCTGGAGGGAAA 60.252 55.000 0.00 0.00 0.00 3.13
195 201 0.174617 GACGAGAGCTGGAGGGAAAG 59.825 60.000 0.00 0.00 0.00 2.62
196 202 1.153469 CGAGAGCTGGAGGGAAAGC 60.153 63.158 0.00 0.00 39.82 3.51
197 203 1.892819 CGAGAGCTGGAGGGAAAGCA 61.893 60.000 0.00 0.00 42.06 3.91
198 204 0.326264 GAGAGCTGGAGGGAAAGCAA 59.674 55.000 0.00 0.00 42.06 3.91
199 205 0.037447 AGAGCTGGAGGGAAAGCAAC 59.963 55.000 0.00 0.00 42.06 4.17
200 206 0.250901 GAGCTGGAGGGAAAGCAACA 60.251 55.000 0.00 0.00 42.06 3.33
201 207 0.538287 AGCTGGAGGGAAAGCAACAC 60.538 55.000 0.00 0.00 42.06 3.32
202 208 1.856265 GCTGGAGGGAAAGCAACACG 61.856 60.000 0.00 0.00 39.31 4.49
203 209 1.228124 TGGAGGGAAAGCAACACGG 60.228 57.895 0.00 0.00 0.00 4.94
204 210 2.626780 GGAGGGAAAGCAACACGGC 61.627 63.158 0.00 0.00 0.00 5.68
205 211 2.966309 GAGGGAAAGCAACACGGCG 61.966 63.158 4.80 4.80 39.27 6.46
206 212 4.700365 GGGAAAGCAACACGGCGC 62.700 66.667 6.90 0.00 39.27 6.53
207 213 3.660111 GGAAAGCAACACGGCGCT 61.660 61.111 6.90 0.00 41.20 5.92
391 397 3.842007 TCACGGTGGGAAACTAAAGAA 57.158 42.857 8.50 0.00 0.00 2.52
452 460 5.890334 TCAGAGAATGTTTCGCTTTTGTTT 58.110 33.333 0.00 0.00 37.74 2.83
458 466 0.099082 TTTCGCTTTTGTTTCGCCGT 59.901 45.000 0.00 0.00 0.00 5.68
517 539 1.745489 CGAGGCCTTCCCCTTTTCG 60.745 63.158 6.77 0.00 34.69 3.46
537 559 2.987821 CGAGAGAAGAAAAACCTCGTCC 59.012 50.000 0.00 0.00 41.02 4.79
541 563 4.778427 AGAGAAGAAAAACCTCGTCCCTAT 59.222 41.667 0.00 0.00 32.52 2.57
594 617 3.200329 AACTTGGTGGCCCCGTACC 62.200 63.158 0.00 0.48 37.48 3.34
608 631 3.133362 CCCCGTACCAGCTAATTCAACTA 59.867 47.826 0.00 0.00 0.00 2.24
610 633 4.369182 CCGTACCAGCTAATTCAACTAGG 58.631 47.826 0.00 0.00 0.00 3.02
611 634 4.369182 CGTACCAGCTAATTCAACTAGGG 58.631 47.826 0.00 0.00 0.00 3.53
612 635 4.098960 CGTACCAGCTAATTCAACTAGGGA 59.901 45.833 0.00 0.00 0.00 4.20
613 636 5.394883 CGTACCAGCTAATTCAACTAGGGAA 60.395 44.000 0.00 0.00 0.00 3.97
614 637 5.104259 ACCAGCTAATTCAACTAGGGAAG 57.896 43.478 0.00 0.00 0.00 3.46
615 638 4.080299 ACCAGCTAATTCAACTAGGGAAGG 60.080 45.833 0.00 0.00 0.00 3.46
617 640 5.119694 CAGCTAATTCAACTAGGGAAGGAC 58.880 45.833 0.00 0.00 0.00 3.85
619 642 5.430089 AGCTAATTCAACTAGGGAAGGACAT 59.570 40.000 0.00 0.00 0.00 3.06
620 643 5.529060 GCTAATTCAACTAGGGAAGGACATG 59.471 44.000 0.00 0.00 0.00 3.21
621 644 5.779241 AATTCAACTAGGGAAGGACATGA 57.221 39.130 0.00 0.00 0.00 3.07
622 645 4.553330 TTCAACTAGGGAAGGACATGAC 57.447 45.455 0.00 0.00 0.00 3.06
624 647 2.496070 CAACTAGGGAAGGACATGACGA 59.504 50.000 0.00 0.00 0.00 4.20
625 648 2.379972 ACTAGGGAAGGACATGACGAG 58.620 52.381 0.00 0.00 0.00 4.18
628 651 1.550976 AGGGAAGGACATGACGAGTTC 59.449 52.381 0.00 0.00 0.00 3.01
629 652 1.405661 GGGAAGGACATGACGAGTTCC 60.406 57.143 0.00 6.86 33.97 3.62
630 653 1.405661 GGAAGGACATGACGAGTTCCC 60.406 57.143 0.00 0.00 0.00 3.97
631 654 0.246635 AAGGACATGACGAGTTCCCG 59.753 55.000 0.00 0.00 0.00 5.14
632 655 0.898789 AGGACATGACGAGTTCCCGT 60.899 55.000 0.00 0.00 46.43 5.28
634 657 1.202268 GGACATGACGAGTTCCCGTAG 60.202 57.143 0.00 0.00 43.49 3.51
636 659 2.679837 GACATGACGAGTTCCCGTAGTA 59.320 50.000 0.00 0.00 43.49 1.82
637 660 2.681848 ACATGACGAGTTCCCGTAGTAG 59.318 50.000 0.00 0.00 43.49 2.57
638 661 2.479566 TGACGAGTTCCCGTAGTAGT 57.520 50.000 0.00 0.00 43.49 2.73
639 662 2.350522 TGACGAGTTCCCGTAGTAGTC 58.649 52.381 0.00 0.00 43.49 2.59
640 663 2.027745 TGACGAGTTCCCGTAGTAGTCT 60.028 50.000 0.00 0.00 43.49 3.24
641 664 2.351111 GACGAGTTCCCGTAGTAGTCTG 59.649 54.545 0.00 0.00 43.49 3.51
642 665 2.289945 ACGAGTTCCCGTAGTAGTCTGT 60.290 50.000 0.00 0.00 41.44 3.41
643 666 2.351111 CGAGTTCCCGTAGTAGTCTGTC 59.649 54.545 0.00 0.00 0.00 3.51
644 667 3.608796 GAGTTCCCGTAGTAGTCTGTCT 58.391 50.000 0.00 0.00 0.00 3.41
645 668 3.608796 AGTTCCCGTAGTAGTCTGTCTC 58.391 50.000 0.00 0.00 0.00 3.36
646 669 2.306341 TCCCGTAGTAGTCTGTCTCG 57.694 55.000 0.00 0.00 0.00 4.04
647 670 1.552337 TCCCGTAGTAGTCTGTCTCGT 59.448 52.381 0.00 0.00 0.00 4.18
648 671 1.664659 CCCGTAGTAGTCTGTCTCGTG 59.335 57.143 0.00 0.00 0.00 4.35
649 672 2.344950 CCGTAGTAGTCTGTCTCGTGT 58.655 52.381 0.00 0.00 0.00 4.49
651 674 4.118410 CCGTAGTAGTCTGTCTCGTGTAT 58.882 47.826 0.00 0.00 0.00 2.29
652 675 4.208873 CCGTAGTAGTCTGTCTCGTGTATC 59.791 50.000 0.00 0.00 0.00 2.24
653 676 4.085670 CGTAGTAGTCTGTCTCGTGTATCG 60.086 50.000 0.00 0.00 41.41 2.92
654 677 3.196463 AGTAGTCTGTCTCGTGTATCGG 58.804 50.000 0.00 0.00 40.32 4.18
655 678 2.110901 AGTCTGTCTCGTGTATCGGT 57.889 50.000 0.00 0.00 40.32 4.69
656 679 1.738350 AGTCTGTCTCGTGTATCGGTG 59.262 52.381 0.00 0.00 40.32 4.94
657 680 1.092348 TCTGTCTCGTGTATCGGTGG 58.908 55.000 0.00 0.00 40.32 4.61
659 682 1.064208 CTGTCTCGTGTATCGGTGGAG 59.936 57.143 0.00 0.00 40.32 3.86
660 683 1.093159 GTCTCGTGTATCGGTGGAGT 58.907 55.000 0.00 0.00 40.32 3.85
661 684 1.471684 GTCTCGTGTATCGGTGGAGTT 59.528 52.381 0.00 0.00 40.32 3.01
662 685 2.094854 GTCTCGTGTATCGGTGGAGTTT 60.095 50.000 0.00 0.00 40.32 2.66
664 687 1.614903 TCGTGTATCGGTGGAGTTTGT 59.385 47.619 0.00 0.00 40.32 2.83
665 688 1.724623 CGTGTATCGGTGGAGTTTGTG 59.275 52.381 0.00 0.00 35.71 3.33
666 689 1.463444 GTGTATCGGTGGAGTTTGTGC 59.537 52.381 0.00 0.00 0.00 4.57
669 1211 4.368808 CGGTGGAGTTTGTGCGCG 62.369 66.667 0.00 0.00 0.00 6.86
676 1218 0.923911 GAGTTTGTGCGCGTCAACAC 60.924 55.000 15.45 7.89 37.31 3.32
691 1233 4.142902 CGTCAACACTGTTTTGTTCTCAGT 60.143 41.667 6.58 0.00 42.14 3.41
714 1804 0.953727 CATATTCCACACATGCGGGG 59.046 55.000 0.00 0.00 0.00 5.73
715 1805 0.178992 ATATTCCACACATGCGGGGG 60.179 55.000 1.27 0.44 0.00 5.40
716 1806 2.902423 TATTCCACACATGCGGGGGC 62.902 60.000 1.27 0.00 0.00 5.80
720 1810 4.284550 ACACATGCGGGGGCACTT 62.285 61.111 0.00 0.00 0.00 3.16
721 1811 2.990967 CACATGCGGGGGCACTTT 60.991 61.111 0.00 0.00 0.00 2.66
722 1812 2.990967 ACATGCGGGGGCACTTTG 60.991 61.111 0.00 0.00 0.00 2.77
723 1813 4.440127 CATGCGGGGGCACTTTGC 62.440 66.667 0.00 0.00 44.08 3.68
742 1832 0.462047 CGGGGGCACTTCACTATGAC 60.462 60.000 0.00 0.00 0.00 3.06
776 1866 3.559655 TCATGGATTTATCAACGGCTTCG 59.440 43.478 0.00 0.00 40.22 3.79
786 1876 2.549282 CGGCTTCGTTCCGTTGTG 59.451 61.111 4.97 0.00 41.85 3.33
798 1888 1.142060 TCCGTTGTGGAGTTGGATGTT 59.858 47.619 0.00 0.00 43.74 2.71
801 1891 1.000274 GTTGTGGAGTTGGATGTTGGC 60.000 52.381 0.00 0.00 0.00 4.52
803 1893 1.702401 TGTGGAGTTGGATGTTGGCTA 59.298 47.619 0.00 0.00 0.00 3.93
818 1908 3.773860 TGGCTACATTAAACAATGGCG 57.226 42.857 2.72 0.00 34.56 5.69
827 1917 2.812358 AAACAATGGCGGTTCCTTTC 57.188 45.000 0.00 0.00 35.26 2.62
829 1919 0.250553 ACAATGGCGGTTCCTTTCGA 60.251 50.000 0.00 0.00 35.26 3.71
842 1933 5.685954 GGTTCCTTTCGACTTAAAAGCAAAG 59.314 40.000 0.00 0.00 33.33 2.77
847 1938 8.842280 TCCTTTCGACTTAAAAGCAAAGAAATA 58.158 29.630 9.40 0.11 33.33 1.40
889 1984 7.672983 AAGTACACCACATTAACAAGATCAG 57.327 36.000 0.00 0.00 0.00 2.90
899 1994 3.715628 AACAAGATCAGCAAAGCGTTT 57.284 38.095 0.00 0.00 0.00 3.60
912 2007 1.102978 AGCGTTTGTTTGTTGCTCCT 58.897 45.000 0.00 0.00 0.00 3.69
914 2009 2.290641 AGCGTTTGTTTGTTGCTCCTAG 59.709 45.455 0.00 0.00 0.00 3.02
922 2017 0.685097 TGTTGCTCCTAGAAACCGCT 59.315 50.000 0.00 0.00 32.60 5.52
925 2020 1.848652 TGCTCCTAGAAACCGCTACT 58.151 50.000 0.00 0.00 0.00 2.57
928 2040 2.427812 GCTCCTAGAAACCGCTACTCTT 59.572 50.000 0.00 0.00 0.00 2.85
940 2052 4.092968 ACCGCTACTCTTCTTTAAAATGCG 59.907 41.667 0.00 0.00 39.46 4.73
992 2105 4.781775 TCCTCCTCCTACTCTCTACAAG 57.218 50.000 0.00 0.00 0.00 3.16
998 2111 2.093106 CCTACTCTCTACAAGGCACGT 58.907 52.381 0.00 0.00 0.00 4.49
1021 2148 1.005450 TGGCACCCAAGGAATTACTCC 59.995 52.381 0.00 0.00 45.81 3.85
1041 2168 3.003173 TCCGCCACCCTCCTCTTG 61.003 66.667 0.00 0.00 0.00 3.02
1092 2219 0.719465 GGCACGAAAACGTCATCGAT 59.281 50.000 24.18 9.89 41.43 3.59
1212 2339 2.835605 GGTGACCATGTACACGGTG 58.164 57.895 20.10 6.58 37.82 4.94
1360 2487 1.686587 TCTTCGTCAAGAGCTTCACCA 59.313 47.619 0.00 0.00 33.38 4.17
1428 2555 0.888619 TTGTGCTCTACGAGGTGAGG 59.111 55.000 0.00 0.00 0.00 3.86
1902 3036 0.107643 TGTTCATCGCCTCCACAACA 59.892 50.000 0.00 0.00 0.00 3.33
1965 3102 0.179059 TTGAGAGCTGTGGCGTTTGA 60.179 50.000 0.00 0.00 44.37 2.69
2026 3163 0.616111 AGGTGACGAGAAGGATGCCT 60.616 55.000 0.00 0.00 33.87 4.75
2027 3164 0.179097 GGTGACGAGAAGGATGCCTC 60.179 60.000 0.00 0.00 30.89 4.70
2028 3165 0.820871 GTGACGAGAAGGATGCCTCT 59.179 55.000 0.00 0.00 30.89 3.69
2252 3389 5.127845 TGCTGAATCGGAGAGAATAAAGACT 59.872 40.000 0.00 0.00 43.63 3.24
2272 3409 6.237901 AGACTTGCAATGGAGTGTGTTATAA 58.762 36.000 0.00 0.00 0.00 0.98
2277 3414 6.098679 TGCAATGGAGTGTGTTATAATTTGC 58.901 36.000 0.00 0.00 37.00 3.68
2278 3415 6.071447 TGCAATGGAGTGTGTTATAATTTGCT 60.071 34.615 0.00 0.00 37.29 3.91
2279 3416 6.254157 GCAATGGAGTGTGTTATAATTTGCTG 59.746 38.462 0.00 0.00 34.47 4.41
2280 3417 7.537715 CAATGGAGTGTGTTATAATTTGCTGA 58.462 34.615 0.00 0.00 0.00 4.26
2281 3418 7.886629 ATGGAGTGTGTTATAATTTGCTGAT 57.113 32.000 0.00 0.00 0.00 2.90
2282 3419 7.087409 TGGAGTGTGTTATAATTTGCTGATG 57.913 36.000 0.00 0.00 0.00 3.07
2283 3420 5.973565 GGAGTGTGTTATAATTTGCTGATGC 59.026 40.000 0.00 0.00 40.20 3.91
2298 3435 5.991328 GCTGATGCAACTTGTAGCTATAA 57.009 39.130 0.00 0.00 39.41 0.98
2299 3436 6.363577 GCTGATGCAACTTGTAGCTATAAA 57.636 37.500 4.38 0.00 39.41 1.40
2300 3437 6.785191 GCTGATGCAACTTGTAGCTATAAAA 58.215 36.000 4.38 0.00 39.41 1.52
2301 3438 7.250569 GCTGATGCAACTTGTAGCTATAAAAA 58.749 34.615 4.38 0.00 39.41 1.94
2302 3439 7.917505 GCTGATGCAACTTGTAGCTATAAAAAT 59.082 33.333 4.38 0.00 39.41 1.82
2303 3440 9.229784 CTGATGCAACTTGTAGCTATAAAAATG 57.770 33.333 4.38 5.14 0.00 2.32
2304 3441 8.190122 TGATGCAACTTGTAGCTATAAAAATGG 58.810 33.333 4.38 0.00 0.00 3.16
2305 3442 7.461182 TGCAACTTGTAGCTATAAAAATGGT 57.539 32.000 4.38 0.00 0.00 3.55
2306 3443 7.535139 TGCAACTTGTAGCTATAAAAATGGTC 58.465 34.615 4.38 0.00 0.00 4.02
2307 3444 6.687105 GCAACTTGTAGCTATAAAAATGGTCG 59.313 38.462 4.38 0.00 0.00 4.79
2308 3445 6.920569 ACTTGTAGCTATAAAAATGGTCGG 57.079 37.500 4.38 0.00 0.00 4.79
2309 3446 5.820947 ACTTGTAGCTATAAAAATGGTCGGG 59.179 40.000 4.38 0.00 0.00 5.14
2310 3447 5.617528 TGTAGCTATAAAAATGGTCGGGA 57.382 39.130 0.00 0.00 0.00 5.14
2311 3448 5.362263 TGTAGCTATAAAAATGGTCGGGAC 58.638 41.667 0.00 0.00 0.00 4.46
2312 3449 4.772886 AGCTATAAAAATGGTCGGGACT 57.227 40.909 0.00 0.00 0.00 3.85
2313 3450 5.112129 AGCTATAAAAATGGTCGGGACTT 57.888 39.130 0.00 0.00 0.00 3.01
2314 3451 5.506708 AGCTATAAAAATGGTCGGGACTTT 58.493 37.500 0.00 0.00 0.00 2.66
2315 3452 6.655930 AGCTATAAAAATGGTCGGGACTTTA 58.344 36.000 0.00 0.00 0.00 1.85
2316 3453 6.541278 AGCTATAAAAATGGTCGGGACTTTAC 59.459 38.462 0.00 0.00 0.00 2.01
2317 3454 6.541278 GCTATAAAAATGGTCGGGACTTTACT 59.459 38.462 0.00 0.00 0.00 2.24
2318 3455 6.997239 ATAAAAATGGTCGGGACTTTACTC 57.003 37.500 0.00 0.00 0.00 2.59
2319 3456 3.345508 AAATGGTCGGGACTTTACTCC 57.654 47.619 0.00 0.00 0.00 3.85
2320 3457 1.201424 ATGGTCGGGACTTTACTCCC 58.799 55.000 0.00 0.00 46.19 4.30
2327 3464 3.413846 GGGACTTTACTCCCTTCGTTT 57.586 47.619 0.00 0.00 46.16 3.60
2328 3465 4.541973 GGGACTTTACTCCCTTCGTTTA 57.458 45.455 0.00 0.00 46.16 2.01
2329 3466 5.095145 GGGACTTTACTCCCTTCGTTTAT 57.905 43.478 0.00 0.00 46.16 1.40
2330 3467 5.494724 GGGACTTTACTCCCTTCGTTTATT 58.505 41.667 0.00 0.00 46.16 1.40
2331 3468 5.942236 GGGACTTTACTCCCTTCGTTTATTT 59.058 40.000 0.00 0.00 46.16 1.40
2332 3469 6.432162 GGGACTTTACTCCCTTCGTTTATTTT 59.568 38.462 0.00 0.00 46.16 1.82
2333 3470 7.040201 GGGACTTTACTCCCTTCGTTTATTTTT 60.040 37.037 0.00 0.00 46.16 1.94
2334 3471 9.002600 GGACTTTACTCCCTTCGTTTATTTTTA 57.997 33.333 0.00 0.00 0.00 1.52
2367 3504 9.825109 TTTTTGAAAATCTCCCTTCGTTTATTT 57.175 25.926 0.00 0.00 0.00 1.40
2368 3505 8.810652 TTTGAAAATCTCCCTTCGTTTATTTG 57.189 30.769 0.00 0.00 0.00 2.32
2369 3506 7.519032 TGAAAATCTCCCTTCGTTTATTTGT 57.481 32.000 0.00 0.00 0.00 2.83
2370 3507 7.947282 TGAAAATCTCCCTTCGTTTATTTGTT 58.053 30.769 0.00 0.00 0.00 2.83
2371 3508 8.079809 TGAAAATCTCCCTTCGTTTATTTGTTC 58.920 33.333 0.00 0.00 0.00 3.18
2372 3509 7.761038 AAATCTCCCTTCGTTTATTTGTTCT 57.239 32.000 0.00 0.00 0.00 3.01
2373 3510 6.986904 ATCTCCCTTCGTTTATTTGTTCTC 57.013 37.500 0.00 0.00 0.00 2.87
2374 3511 5.243207 TCTCCCTTCGTTTATTTGTTCTCC 58.757 41.667 0.00 0.00 0.00 3.71
2375 3512 4.329392 TCCCTTCGTTTATTTGTTCTCCC 58.671 43.478 0.00 0.00 0.00 4.30
2376 3513 4.042435 TCCCTTCGTTTATTTGTTCTCCCT 59.958 41.667 0.00 0.00 0.00 4.20
2377 3514 5.248934 TCCCTTCGTTTATTTGTTCTCCCTA 59.751 40.000 0.00 0.00 0.00 3.53
2378 3515 5.353400 CCCTTCGTTTATTTGTTCTCCCTAC 59.647 44.000 0.00 0.00 0.00 3.18
2379 3516 5.935789 CCTTCGTTTATTTGTTCTCCCTACA 59.064 40.000 0.00 0.00 0.00 2.74
2380 3517 6.598064 CCTTCGTTTATTTGTTCTCCCTACAT 59.402 38.462 0.00 0.00 0.00 2.29
2381 3518 7.120726 CCTTCGTTTATTTGTTCTCCCTACATT 59.879 37.037 0.00 0.00 0.00 2.71
2382 3519 9.158233 CTTCGTTTATTTGTTCTCCCTACATTA 57.842 33.333 0.00 0.00 0.00 1.90
2383 3520 8.712285 TCGTTTATTTGTTCTCCCTACATTAG 57.288 34.615 0.00 0.00 0.00 1.73
2384 3521 7.767198 TCGTTTATTTGTTCTCCCTACATTAGG 59.233 37.037 0.00 0.00 45.81 2.69
2385 3522 7.551617 CGTTTATTTGTTCTCCCTACATTAGGT 59.448 37.037 0.00 0.00 44.73 3.08
2386 3523 9.239551 GTTTATTTGTTCTCCCTACATTAGGTT 57.760 33.333 0.00 0.00 44.73 3.50
2387 3524 9.457436 TTTATTTGTTCTCCCTACATTAGGTTC 57.543 33.333 0.00 0.00 44.73 3.62
2388 3525 4.730949 TGTTCTCCCTACATTAGGTTCG 57.269 45.455 0.00 0.00 44.73 3.95
2389 3526 4.091549 TGTTCTCCCTACATTAGGTTCGT 58.908 43.478 0.00 0.00 44.73 3.85
2390 3527 4.159135 TGTTCTCCCTACATTAGGTTCGTC 59.841 45.833 0.00 0.00 44.73 4.20
2391 3528 2.947652 TCTCCCTACATTAGGTTCGTCG 59.052 50.000 0.00 0.00 44.73 5.12
2392 3529 2.686915 CTCCCTACATTAGGTTCGTCGT 59.313 50.000 0.00 0.00 44.73 4.34
2393 3530 3.879295 CTCCCTACATTAGGTTCGTCGTA 59.121 47.826 0.00 0.00 44.73 3.43
2394 3531 4.269183 TCCCTACATTAGGTTCGTCGTAA 58.731 43.478 0.00 0.00 44.73 3.18
2395 3532 4.336433 TCCCTACATTAGGTTCGTCGTAAG 59.664 45.833 0.00 0.00 44.73 2.34
2396 3533 4.096984 CCCTACATTAGGTTCGTCGTAAGT 59.903 45.833 0.00 0.00 44.73 2.24
2397 3534 5.269313 CCTACATTAGGTTCGTCGTAAGTC 58.731 45.833 0.00 0.00 41.18 3.01
2398 3535 4.771590 ACATTAGGTTCGTCGTAAGTCA 57.228 40.909 0.00 0.00 39.48 3.41
2399 3536 5.125100 ACATTAGGTTCGTCGTAAGTCAA 57.875 39.130 0.00 0.00 39.48 3.18
2400 3537 5.531634 ACATTAGGTTCGTCGTAAGTCAAA 58.468 37.500 0.00 0.00 39.48 2.69
2401 3538 6.161381 ACATTAGGTTCGTCGTAAGTCAAAT 58.839 36.000 0.00 0.00 39.48 2.32
2402 3539 6.647895 ACATTAGGTTCGTCGTAAGTCAAATT 59.352 34.615 0.00 0.00 39.48 1.82
2403 3540 7.172019 ACATTAGGTTCGTCGTAAGTCAAATTT 59.828 33.333 0.00 0.00 39.48 1.82
2404 3541 8.649841 CATTAGGTTCGTCGTAAGTCAAATTTA 58.350 33.333 0.00 0.00 39.48 1.40
2405 3542 8.761575 TTAGGTTCGTCGTAAGTCAAATTTAT 57.238 30.769 0.00 0.00 39.48 1.40
2406 3543 9.853555 TTAGGTTCGTCGTAAGTCAAATTTATA 57.146 29.630 0.00 0.00 39.48 0.98
2407 3544 8.761575 AGGTTCGTCGTAAGTCAAATTTATAA 57.238 30.769 0.00 0.00 39.48 0.98
2408 3545 9.206870 AGGTTCGTCGTAAGTCAAATTTATAAA 57.793 29.630 0.00 0.00 39.48 1.40
2409 3546 9.469239 GGTTCGTCGTAAGTCAAATTTATAAAG 57.531 33.333 3.94 0.00 39.48 1.85
2454 3591 8.995027 ATAAAATAGCAAGATCCACAATACCA 57.005 30.769 0.00 0.00 0.00 3.25
2455 3592 7.716799 AAAATAGCAAGATCCACAATACCAA 57.283 32.000 0.00 0.00 0.00 3.67
2456 3593 7.716799 AAATAGCAAGATCCACAATACCAAA 57.283 32.000 0.00 0.00 0.00 3.28
2457 3594 7.902920 AATAGCAAGATCCACAATACCAAAT 57.097 32.000 0.00 0.00 0.00 2.32
2458 3595 8.995027 AATAGCAAGATCCACAATACCAAATA 57.005 30.769 0.00 0.00 0.00 1.40
2459 3596 8.995027 ATAGCAAGATCCACAATACCAAATAA 57.005 30.769 0.00 0.00 0.00 1.40
2460 3597 7.716799 AGCAAGATCCACAATACCAAATAAA 57.283 32.000 0.00 0.00 0.00 1.40
2461 3598 8.310122 AGCAAGATCCACAATACCAAATAAAT 57.690 30.769 0.00 0.00 0.00 1.40
2462 3599 9.420118 AGCAAGATCCACAATACCAAATAAATA 57.580 29.630 0.00 0.00 0.00 1.40
2541 3678 9.936759 TTTTTGGATAAACTTTGTCAAACTTCT 57.063 25.926 0.00 0.00 0.00 2.85
2542 3679 9.936759 TTTTGGATAAACTTTGTCAAACTTCTT 57.063 25.926 0.00 0.00 0.00 2.52
2543 3680 8.925161 TTGGATAAACTTTGTCAAACTTCTTG 57.075 30.769 0.00 0.00 0.00 3.02
2544 3681 8.287439 TGGATAAACTTTGTCAAACTTCTTGA 57.713 30.769 0.00 0.00 0.00 3.02
2545 3682 8.744652 TGGATAAACTTTGTCAAACTTCTTGAA 58.255 29.630 0.00 0.00 0.00 2.69
2546 3683 9.581099 GGATAAACTTTGTCAAACTTCTTGAAA 57.419 29.630 0.00 0.00 0.00 2.69
2548 3685 9.921637 ATAAACTTTGTCAAACTTCTTGAAACA 57.078 25.926 0.00 0.00 0.00 2.83
2549 3686 8.655651 AAACTTTGTCAAACTTCTTGAAACAA 57.344 26.923 0.00 0.00 0.00 2.83
2550 3687 8.655651 AACTTTGTCAAACTTCTTGAAACAAA 57.344 26.923 0.00 8.85 0.00 2.83
2551 3688 8.655651 ACTTTGTCAAACTTCTTGAAACAAAA 57.344 26.923 9.86 0.00 29.83 2.44
2552 3689 8.547894 ACTTTGTCAAACTTCTTGAAACAAAAC 58.452 29.630 9.86 0.00 29.83 2.43
2553 3690 7.414814 TTGTCAAACTTCTTGAAACAAAACC 57.585 32.000 0.00 0.00 0.00 3.27
2554 3691 6.754193 TGTCAAACTTCTTGAAACAAAACCT 58.246 32.000 0.00 0.00 0.00 3.50
2555 3692 7.887381 TGTCAAACTTCTTGAAACAAAACCTA 58.113 30.769 0.00 0.00 0.00 3.08
2556 3693 8.361139 TGTCAAACTTCTTGAAACAAAACCTAA 58.639 29.630 0.00 0.00 0.00 2.69
2557 3694 9.366216 GTCAAACTTCTTGAAACAAAACCTAAT 57.634 29.630 0.00 0.00 0.00 1.73
2561 3698 9.476202 AACTTCTTGAAACAAAACCTAATATGC 57.524 29.630 0.00 0.00 0.00 3.14
2562 3699 7.807907 ACTTCTTGAAACAAAACCTAATATGCG 59.192 33.333 0.00 0.00 0.00 4.73
2563 3700 7.441890 TCTTGAAACAAAACCTAATATGCGA 57.558 32.000 0.00 0.00 0.00 5.10
2564 3701 7.877003 TCTTGAAACAAAACCTAATATGCGAA 58.123 30.769 0.00 0.00 0.00 4.70
2565 3702 8.020819 TCTTGAAACAAAACCTAATATGCGAAG 58.979 33.333 0.00 0.00 0.00 3.79
2566 3703 7.209471 TGAAACAAAACCTAATATGCGAAGT 57.791 32.000 0.00 0.00 0.00 3.01
2567 3704 8.325421 TGAAACAAAACCTAATATGCGAAGTA 57.675 30.769 0.00 0.00 0.00 2.24
2568 3705 8.784994 TGAAACAAAACCTAATATGCGAAGTAA 58.215 29.630 0.00 0.00 0.00 2.24
2569 3706 9.615295 GAAACAAAACCTAATATGCGAAGTAAA 57.385 29.630 0.00 0.00 0.00 2.01
2570 3707 9.968870 AAACAAAACCTAATATGCGAAGTAAAA 57.031 25.926 0.00 0.00 0.00 1.52
2571 3708 9.968870 AACAAAACCTAATATGCGAAGTAAAAA 57.031 25.926 0.00 0.00 0.00 1.94
2594 3731 6.502074 AAAAAGACTACTCCCTCTTCTGTT 57.498 37.500 0.00 0.00 0.00 3.16
2595 3732 6.502074 AAAAGACTACTCCCTCTTCTGTTT 57.498 37.500 0.00 0.00 0.00 2.83
2596 3733 7.613551 AAAAGACTACTCCCTCTTCTGTTTA 57.386 36.000 0.00 0.00 0.00 2.01
2597 3734 6.593268 AAGACTACTCCCTCTTCTGTTTAC 57.407 41.667 0.00 0.00 0.00 2.01
2598 3735 5.642165 AGACTACTCCCTCTTCTGTTTACA 58.358 41.667 0.00 0.00 0.00 2.41
2599 3736 6.075984 AGACTACTCCCTCTTCTGTTTACAA 58.924 40.000 0.00 0.00 0.00 2.41
2600 3737 6.553852 AGACTACTCCCTCTTCTGTTTACAAA 59.446 38.462 0.00 0.00 0.00 2.83
2601 3738 7.235812 AGACTACTCCCTCTTCTGTTTACAAAT 59.764 37.037 0.00 0.00 0.00 2.32
2602 3739 7.162082 ACTACTCCCTCTTCTGTTTACAAATG 58.838 38.462 0.00 0.00 0.00 2.32
2603 3740 5.941788 ACTCCCTCTTCTGTTTACAAATGT 58.058 37.500 0.00 0.00 0.00 2.71
2604 3741 7.074653 ACTCCCTCTTCTGTTTACAAATGTA 57.925 36.000 0.00 0.00 0.00 2.29
2605 3742 7.514721 ACTCCCTCTTCTGTTTACAAATGTAA 58.485 34.615 1.96 1.96 38.60 2.41
2606 3743 7.996644 ACTCCCTCTTCTGTTTACAAATGTAAA 59.003 33.333 13.28 13.28 45.18 2.01
2619 3756 6.952935 ACAAATGTAAAACGTTTTTGCAGA 57.047 29.167 29.42 12.37 35.31 4.26
2620 3757 7.352719 ACAAATGTAAAACGTTTTTGCAGAA 57.647 28.000 29.42 9.44 35.31 3.02
2621 3758 7.452231 ACAAATGTAAAACGTTTTTGCAGAAG 58.548 30.769 29.42 20.59 35.31 2.85
2622 3759 5.635549 ATGTAAAACGTTTTTGCAGAAGC 57.364 34.783 29.42 11.32 42.57 3.86
2623 3760 3.544285 TGTAAAACGTTTTTGCAGAAGCG 59.456 39.130 29.42 21.65 46.23 4.68
2624 3761 2.271821 AAACGTTTTTGCAGAAGCGT 57.728 40.000 22.89 22.89 46.04 5.07
2625 3762 1.822581 AACGTTTTTGCAGAAGCGTC 58.177 45.000 27.14 3.60 43.90 5.19
2626 3763 0.028902 ACGTTTTTGCAGAAGCGTCC 59.971 50.000 22.89 0.00 41.54 4.79
2627 3764 0.307760 CGTTTTTGCAGAAGCGTCCT 59.692 50.000 16.42 0.00 46.23 3.85
2628 3765 1.268539 CGTTTTTGCAGAAGCGTCCTT 60.269 47.619 16.42 0.00 46.23 3.36
2629 3766 2.794631 CGTTTTTGCAGAAGCGTCCTTT 60.795 45.455 16.42 0.00 46.23 3.11
2630 3767 2.490328 TTTTGCAGAAGCGTCCTTTG 57.510 45.000 0.00 0.00 46.23 2.77
2631 3768 0.030638 TTTGCAGAAGCGTCCTTTGC 59.969 50.000 5.59 5.59 46.23 3.68
2632 3769 1.100463 TTGCAGAAGCGTCCTTTGCA 61.100 50.000 10.24 10.24 46.23 4.08
2633 3770 1.100463 TGCAGAAGCGTCCTTTGCAA 61.100 50.000 11.56 0.00 46.23 4.08
2634 3771 0.386478 GCAGAAGCGTCCTTTGCAAG 60.386 55.000 0.00 0.00 36.25 4.01
2635 3772 0.386478 CAGAAGCGTCCTTTGCAAGC 60.386 55.000 0.00 0.00 33.85 4.01
2636 3773 1.441016 GAAGCGTCCTTTGCAAGCG 60.441 57.895 0.00 4.92 33.85 4.68
2638 3775 4.030452 GCGTCCTTTGCAAGCGCT 62.030 61.111 22.80 2.64 44.00 5.92
2639 3776 2.639286 CGTCCTTTGCAAGCGCTT 59.361 55.556 18.98 18.98 39.64 4.68
2901 4052 1.540367 CTCCCACCAACCACCCCTA 60.540 63.158 0.00 0.00 0.00 3.53
2905 4058 1.131303 CCACCAACCACCCCTACTCA 61.131 60.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 8.621286 CCATTTGACATCCCTTGTACTTATAAC 58.379 37.037 0.00 0.00 39.18 1.89
101 102 8.096621 TCCATTTGACATCCCTTGTACTTATA 57.903 34.615 0.00 0.00 39.18 0.98
104 105 5.222130 ACTCCATTTGACATCCCTTGTACTT 60.222 40.000 0.00 0.00 39.18 2.24
105 106 4.289672 ACTCCATTTGACATCCCTTGTACT 59.710 41.667 0.00 0.00 39.18 2.73
106 107 4.589908 ACTCCATTTGACATCCCTTGTAC 58.410 43.478 0.00 0.00 39.18 2.90
107 108 4.927267 ACTCCATTTGACATCCCTTGTA 57.073 40.909 0.00 0.00 39.18 2.41
109 110 4.396166 GTGTACTCCATTTGACATCCCTTG 59.604 45.833 0.00 0.00 0.00 3.61
110 111 4.567747 GGTGTACTCCATTTGACATCCCTT 60.568 45.833 9.12 0.00 0.00 3.95
111 112 3.054361 GGTGTACTCCATTTGACATCCCT 60.054 47.826 9.12 0.00 0.00 4.20
112 113 3.279434 GGTGTACTCCATTTGACATCCC 58.721 50.000 9.12 0.00 0.00 3.85
145 146 2.354188 TCGTGAACGGTGCTGTCG 60.354 61.111 2.59 0.00 40.29 4.35
152 153 4.052229 CCCTCGCTCGTGAACGGT 62.052 66.667 2.59 0.00 40.29 4.83
164 165 4.135153 CTCGTCTGGGTGCCCTCG 62.135 72.222 8.91 10.43 36.94 4.63
169 170 2.125753 CAGCTCTCGTCTGGGTGC 60.126 66.667 0.00 0.00 0.00 5.01
179 185 0.326264 TTGCTTTCCCTCCAGCTCTC 59.674 55.000 0.00 0.00 36.92 3.20
180 186 0.037447 GTTGCTTTCCCTCCAGCTCT 59.963 55.000 0.00 0.00 36.92 4.09
182 188 0.538287 GTGTTGCTTTCCCTCCAGCT 60.538 55.000 0.00 0.00 36.92 4.24
183 189 1.856265 CGTGTTGCTTTCCCTCCAGC 61.856 60.000 0.00 0.00 36.49 4.85
184 190 1.237285 CCGTGTTGCTTTCCCTCCAG 61.237 60.000 0.00 0.00 0.00 3.86
185 191 1.228124 CCGTGTTGCTTTCCCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
186 192 2.626780 GCCGTGTTGCTTTCCCTCC 61.627 63.158 0.00 0.00 0.00 4.30
187 193 2.954611 GCCGTGTTGCTTTCCCTC 59.045 61.111 0.00 0.00 0.00 4.30
188 194 2.978010 CGCCGTGTTGCTTTCCCT 60.978 61.111 0.00 0.00 0.00 4.20
189 195 4.700365 GCGCCGTGTTGCTTTCCC 62.700 66.667 0.00 0.00 0.00 3.97
190 196 3.595108 GAGCGCCGTGTTGCTTTCC 62.595 63.158 2.29 0.00 42.60 3.13
191 197 2.127232 GAGCGCCGTGTTGCTTTC 60.127 61.111 2.29 0.00 42.60 2.62
192 198 2.591715 AGAGCGCCGTGTTGCTTT 60.592 55.556 2.29 0.00 42.60 3.51
193 199 3.349006 CAGAGCGCCGTGTTGCTT 61.349 61.111 2.29 0.00 42.60 3.91
196 202 2.027073 TTAGCAGAGCGCCGTGTTG 61.027 57.895 2.29 0.00 44.04 3.33
197 203 2.027625 GTTAGCAGAGCGCCGTGTT 61.028 57.895 2.29 1.88 44.04 3.32
198 204 2.432628 GTTAGCAGAGCGCCGTGT 60.433 61.111 2.29 0.00 44.04 4.49
199 205 3.545481 CGTTAGCAGAGCGCCGTG 61.545 66.667 2.29 2.25 44.04 4.94
200 206 4.796231 CCGTTAGCAGAGCGCCGT 62.796 66.667 2.29 0.00 44.04 5.68
237 243 1.357334 GCCCTCTTCTAGCTCGACG 59.643 63.158 0.00 0.00 0.00 5.12
238 244 1.357334 CGCCCTCTTCTAGCTCGAC 59.643 63.158 0.00 0.00 0.00 4.20
452 460 0.941542 CAGGTGAAAGAAAACGGCGA 59.058 50.000 16.62 0.00 0.00 5.54
458 466 2.733858 GCACGCAACAGGTGAAAGAAAA 60.734 45.455 0.00 0.00 37.60 2.29
517 539 3.007074 AGGGACGAGGTTTTTCTTCTCTC 59.993 47.826 0.00 0.00 0.00 3.20
537 559 2.106332 GGACGGCCGACACATAGG 59.894 66.667 35.90 0.00 0.00 2.57
594 617 5.119694 GTCCTTCCCTAGTTGAATTAGCTG 58.880 45.833 0.00 0.00 0.00 4.24
608 631 1.550976 GAACTCGTCATGTCCTTCCCT 59.449 52.381 0.00 0.00 0.00 4.20
610 633 1.405661 GGGAACTCGTCATGTCCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
611 634 1.736032 CGGGAACTCGTCATGTCCTTC 60.736 57.143 0.00 0.00 0.00 3.46
612 635 0.246635 CGGGAACTCGTCATGTCCTT 59.753 55.000 0.00 0.00 0.00 3.36
613 636 0.898789 ACGGGAACTCGTCATGTCCT 60.899 55.000 0.00 0.00 39.34 3.85
614 637 0.813184 TACGGGAACTCGTCATGTCC 59.187 55.000 2.22 0.00 42.82 4.02
615 638 1.471684 ACTACGGGAACTCGTCATGTC 59.528 52.381 2.22 0.00 42.82 3.06
617 640 2.681848 ACTACTACGGGAACTCGTCATG 59.318 50.000 2.22 0.00 42.82 3.07
619 642 2.027745 AGACTACTACGGGAACTCGTCA 60.028 50.000 2.22 0.00 42.82 4.35
620 643 2.351111 CAGACTACTACGGGAACTCGTC 59.649 54.545 2.22 0.00 42.82 4.20
621 644 2.289945 ACAGACTACTACGGGAACTCGT 60.290 50.000 4.87 4.87 45.88 4.18
622 645 2.351111 GACAGACTACTACGGGAACTCG 59.649 54.545 0.00 0.00 0.00 4.18
624 647 3.608796 GAGACAGACTACTACGGGAACT 58.391 50.000 0.00 0.00 0.00 3.01
625 648 2.351111 CGAGACAGACTACTACGGGAAC 59.649 54.545 0.00 0.00 0.00 3.62
628 651 1.664659 CACGAGACAGACTACTACGGG 59.335 57.143 0.00 0.00 0.00 5.28
629 652 2.344950 ACACGAGACAGACTACTACGG 58.655 52.381 0.00 0.00 0.00 4.02
630 653 4.085670 CGATACACGAGACAGACTACTACG 60.086 50.000 0.00 0.00 45.77 3.51
631 654 4.208873 CCGATACACGAGACAGACTACTAC 59.791 50.000 0.00 0.00 45.77 2.73
632 655 4.142071 ACCGATACACGAGACAGACTACTA 60.142 45.833 0.00 0.00 45.77 1.82
634 657 2.935201 ACCGATACACGAGACAGACTAC 59.065 50.000 0.00 0.00 45.77 2.73
636 659 1.738350 CACCGATACACGAGACAGACT 59.262 52.381 0.00 0.00 45.77 3.24
637 660 1.202154 CCACCGATACACGAGACAGAC 60.202 57.143 0.00 0.00 45.77 3.51
638 661 1.092348 CCACCGATACACGAGACAGA 58.908 55.000 0.00 0.00 45.77 3.41
639 662 1.064208 CTCCACCGATACACGAGACAG 59.936 57.143 0.00 0.00 45.77 3.51
640 663 1.092348 CTCCACCGATACACGAGACA 58.908 55.000 0.00 0.00 45.77 3.41
641 664 1.093159 ACTCCACCGATACACGAGAC 58.907 55.000 0.00 0.00 45.77 3.36
642 665 1.830279 AACTCCACCGATACACGAGA 58.170 50.000 0.00 0.00 45.77 4.04
643 666 2.259618 CAAACTCCACCGATACACGAG 58.740 52.381 0.00 0.00 45.77 4.18
644 667 1.614903 ACAAACTCCACCGATACACGA 59.385 47.619 0.00 0.00 45.77 4.35
645 668 1.724623 CACAAACTCCACCGATACACG 59.275 52.381 0.00 0.00 42.18 4.49
646 669 1.463444 GCACAAACTCCACCGATACAC 59.537 52.381 0.00 0.00 0.00 2.90
647 670 1.803334 GCACAAACTCCACCGATACA 58.197 50.000 0.00 0.00 0.00 2.29
648 671 0.719465 CGCACAAACTCCACCGATAC 59.281 55.000 0.00 0.00 0.00 2.24
649 672 1.017177 GCGCACAAACTCCACCGATA 61.017 55.000 0.30 0.00 0.00 2.92
651 674 2.970324 GCGCACAAACTCCACCGA 60.970 61.111 0.30 0.00 0.00 4.69
652 675 4.368808 CGCGCACAAACTCCACCG 62.369 66.667 8.75 0.00 0.00 4.94
653 676 3.236618 GACGCGCACAAACTCCACC 62.237 63.158 5.73 0.00 0.00 4.61
654 677 2.042520 TTGACGCGCACAAACTCCAC 62.043 55.000 5.73 0.00 0.00 4.02
655 678 1.815840 TTGACGCGCACAAACTCCA 60.816 52.632 5.73 0.00 0.00 3.86
656 679 1.368850 GTTGACGCGCACAAACTCC 60.369 57.895 18.11 5.38 0.00 3.85
657 680 0.923911 GTGTTGACGCGCACAAACTC 60.924 55.000 18.11 9.65 35.81 3.01
659 682 1.061887 AGTGTTGACGCGCACAAAC 59.938 52.632 18.11 16.81 38.02 2.93
660 683 1.061729 CAGTGTTGACGCGCACAAA 59.938 52.632 18.11 8.46 38.02 2.83
661 684 1.640210 AACAGTGTTGACGCGCACAA 61.640 50.000 7.96 10.90 38.02 3.33
662 685 1.640210 AAACAGTGTTGACGCGCACA 61.640 50.000 9.79 3.73 38.02 4.57
664 687 0.522286 CAAAACAGTGTTGACGCGCA 60.522 50.000 9.79 1.71 0.00 6.09
665 688 0.522495 ACAAAACAGTGTTGACGCGC 60.522 50.000 9.79 0.00 0.00 6.86
666 689 1.837747 GAACAAAACAGTGTTGACGCG 59.162 47.619 9.79 3.53 41.78 6.01
669 1211 5.296813 ACTGAGAACAAAACAGTGTTGAC 57.703 39.130 9.79 4.22 41.78 3.18
676 1218 8.660373 GGAATATGAGTACTGAGAACAAAACAG 58.340 37.037 0.00 0.00 37.62 3.16
721 1811 2.297895 ATAGTGAAGTGCCCCCGCA 61.298 57.895 0.00 0.00 44.78 5.69
722 1812 1.819632 CATAGTGAAGTGCCCCCGC 60.820 63.158 0.00 0.00 0.00 6.13
723 1813 0.462047 GTCATAGTGAAGTGCCCCCG 60.462 60.000 0.00 0.00 0.00 5.73
724 1814 0.107165 GGTCATAGTGAAGTGCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
725 1815 0.912486 AGGTCATAGTGAAGTGCCCC 59.088 55.000 0.00 0.00 0.00 5.80
726 1816 1.555075 TGAGGTCATAGTGAAGTGCCC 59.445 52.381 0.00 0.00 0.00 5.36
727 1817 2.622436 GTGAGGTCATAGTGAAGTGCC 58.378 52.381 0.00 0.00 0.00 5.01
742 1832 3.482156 AATCCATGAATCTCGGTGAGG 57.518 47.619 0.00 0.00 0.00 3.86
776 1866 1.535462 CATCCAACTCCACAACGGAAC 59.465 52.381 0.00 0.00 45.75 3.62
777 1867 1.142060 ACATCCAACTCCACAACGGAA 59.858 47.619 0.00 0.00 45.75 4.30
785 1875 1.702401 TGTAGCCAACATCCAACTCCA 59.298 47.619 0.00 0.00 31.43 3.86
786 1876 2.489938 TGTAGCCAACATCCAACTCC 57.510 50.000 0.00 0.00 31.43 3.85
798 1888 2.425312 CCGCCATTGTTTAATGTAGCCA 59.575 45.455 0.00 0.00 41.68 4.75
801 1891 4.398044 AGGAACCGCCATTGTTTAATGTAG 59.602 41.667 0.00 0.00 41.68 2.74
803 1893 3.161866 AGGAACCGCCATTGTTTAATGT 58.838 40.909 0.00 0.00 41.68 2.71
818 1908 4.823790 TGCTTTTAAGTCGAAAGGAACC 57.176 40.909 0.00 0.00 35.24 3.62
847 1938 8.512138 GGTGTACTTATAGATTGCAGTTGTTTT 58.488 33.333 0.00 0.00 0.00 2.43
865 1956 6.149474 GCTGATCTTGTTAATGTGGTGTACTT 59.851 38.462 0.00 0.00 0.00 2.24
867 1958 5.411361 TGCTGATCTTGTTAATGTGGTGTAC 59.589 40.000 0.00 0.00 0.00 2.90
870 1961 5.375417 TTGCTGATCTTGTTAATGTGGTG 57.625 39.130 0.00 0.00 0.00 4.17
889 1984 1.393196 AGCAACAAACAAACGCTTTGC 59.607 42.857 9.44 0.00 44.39 3.68
899 1994 2.875933 CGGTTTCTAGGAGCAACAAACA 59.124 45.455 0.00 0.00 0.00 2.83
912 2007 8.932791 CATTTTAAAGAAGAGTAGCGGTTTCTA 58.067 33.333 0.00 0.00 30.19 2.10
914 2009 6.523546 GCATTTTAAAGAAGAGTAGCGGTTTC 59.476 38.462 0.00 0.00 0.00 2.78
922 2017 5.242434 TCTGCCGCATTTTAAAGAAGAGTA 58.758 37.500 0.00 0.00 0.00 2.59
925 2020 5.446143 TTTCTGCCGCATTTTAAAGAAGA 57.554 34.783 0.00 0.00 0.00 2.87
928 2040 5.863397 CAGATTTTCTGCCGCATTTTAAAGA 59.137 36.000 0.00 0.00 37.72 2.52
940 2052 3.087781 AGGCTCTTTCAGATTTTCTGCC 58.912 45.455 0.00 0.00 43.95 4.85
958 2071 1.272212 GAGGAGGATCGAGAATGAGGC 59.728 57.143 0.00 0.00 34.37 4.70
998 2111 2.311542 AGTAATTCCTTGGGTGCCATGA 59.688 45.455 0.00 0.00 31.53 3.07
1021 2148 3.775654 GAGGAGGGTGGCGGACAG 61.776 72.222 0.00 0.00 0.00 3.51
1041 2168 2.202864 GCAGCTCGGAGGAGAAGC 60.203 66.667 7.20 0.00 43.27 3.86
1080 2207 0.108804 AGCACCGATCGATGACGTTT 60.109 50.000 15.33 0.00 40.69 3.60
1212 2339 4.047059 TCGTCGCTTGGGTCGGTC 62.047 66.667 4.86 0.00 0.00 4.79
1278 2405 0.546747 TGATCCAGACCTTTCCCGGT 60.547 55.000 0.00 0.00 40.80 5.28
1756 2883 2.174107 CATGCGCTGGTTCACGTG 59.826 61.111 9.94 9.94 0.00 4.49
1902 3036 3.672293 CCAACATTGGCGCTGTCT 58.328 55.556 7.64 0.00 42.21 3.41
1953 3090 1.139163 GGCAATTTCAAACGCCACAG 58.861 50.000 7.42 0.00 44.25 3.66
1954 3091 3.280920 GGCAATTTCAAACGCCACA 57.719 47.368 7.42 0.00 44.25 4.17
1965 3102 0.610232 AAGGCGAGCTCTGGCAATTT 60.610 50.000 25.41 13.71 41.70 1.82
2043 3180 0.625849 CCAATGCCAGTCCTTACCCT 59.374 55.000 0.00 0.00 0.00 4.34
2044 3181 1.037579 GCCAATGCCAGTCCTTACCC 61.038 60.000 0.00 0.00 0.00 3.69
2047 3184 0.698238 AGTGCCAATGCCAGTCCTTA 59.302 50.000 0.00 0.00 36.33 2.69
2101 3238 2.265739 CTGCTGCCGGTCTGCTTA 59.734 61.111 21.53 7.89 39.95 3.09
2131 3268 0.332632 ATGCCTGGTGCCTGTTGTAT 59.667 50.000 0.00 0.00 40.16 2.29
2235 3372 4.801330 TGCAAGTCTTTATTCTCTCCGA 57.199 40.909 0.00 0.00 0.00 4.55
2252 3389 6.589523 GCAAATTATAACACACTCCATTGCAA 59.410 34.615 0.00 0.00 39.25 4.08
2277 3414 9.229784 CATTTTTATAGCTACAAGTTGCATCAG 57.770 33.333 1.81 0.00 33.84 2.90
2278 3415 8.190122 CCATTTTTATAGCTACAAGTTGCATCA 58.810 33.333 1.81 0.00 33.84 3.07
2279 3416 8.190784 ACCATTTTTATAGCTACAAGTTGCATC 58.809 33.333 1.81 0.00 33.84 3.91
2280 3417 8.066612 ACCATTTTTATAGCTACAAGTTGCAT 57.933 30.769 1.81 3.90 33.84 3.96
2281 3418 7.461182 ACCATTTTTATAGCTACAAGTTGCA 57.539 32.000 1.81 0.00 33.84 4.08
2282 3419 6.687105 CGACCATTTTTATAGCTACAAGTTGC 59.313 38.462 1.81 0.00 0.00 4.17
2283 3420 7.186804 CCGACCATTTTTATAGCTACAAGTTG 58.813 38.462 0.00 0.00 0.00 3.16
2284 3421 6.317893 CCCGACCATTTTTATAGCTACAAGTT 59.682 38.462 0.00 0.00 0.00 2.66
2285 3422 5.820947 CCCGACCATTTTTATAGCTACAAGT 59.179 40.000 0.00 0.00 0.00 3.16
2286 3423 6.018180 GTCCCGACCATTTTTATAGCTACAAG 60.018 42.308 0.00 0.00 0.00 3.16
2287 3424 5.818857 GTCCCGACCATTTTTATAGCTACAA 59.181 40.000 0.00 0.00 0.00 2.41
2288 3425 5.129815 AGTCCCGACCATTTTTATAGCTACA 59.870 40.000 0.00 0.00 0.00 2.74
2289 3426 5.608449 AGTCCCGACCATTTTTATAGCTAC 58.392 41.667 0.00 0.00 0.00 3.58
2290 3427 5.881923 AGTCCCGACCATTTTTATAGCTA 57.118 39.130 0.00 0.00 0.00 3.32
2291 3428 4.772886 AGTCCCGACCATTTTTATAGCT 57.227 40.909 0.00 0.00 0.00 3.32
2292 3429 5.830000 AAAGTCCCGACCATTTTTATAGC 57.170 39.130 0.00 0.00 0.00 2.97
2293 3430 7.226128 GGAGTAAAGTCCCGACCATTTTTATAG 59.774 40.741 0.00 0.00 0.00 1.31
2294 3431 7.049754 GGAGTAAAGTCCCGACCATTTTTATA 58.950 38.462 0.00 0.00 0.00 0.98
2295 3432 5.884232 GGAGTAAAGTCCCGACCATTTTTAT 59.116 40.000 0.00 0.00 0.00 1.40
2296 3433 5.247862 GGAGTAAAGTCCCGACCATTTTTA 58.752 41.667 0.00 0.00 0.00 1.52
2297 3434 4.077108 GGAGTAAAGTCCCGACCATTTTT 58.923 43.478 0.00 0.00 0.00 1.94
2298 3435 3.682696 GGAGTAAAGTCCCGACCATTTT 58.317 45.455 0.00 0.00 0.00 1.82
2299 3436 3.345508 GGAGTAAAGTCCCGACCATTT 57.654 47.619 0.00 0.00 0.00 2.32
2308 3445 7.444629 AAAATAAACGAAGGGAGTAAAGTCC 57.555 36.000 0.00 0.00 35.64 3.85
2341 3478 9.825109 AAATAAACGAAGGGAGATTTTCAAAAA 57.175 25.926 0.00 0.00 0.00 1.94
2342 3479 9.255304 CAAATAAACGAAGGGAGATTTTCAAAA 57.745 29.630 0.00 0.00 0.00 2.44
2343 3480 8.417884 ACAAATAAACGAAGGGAGATTTTCAAA 58.582 29.630 0.00 0.00 0.00 2.69
2344 3481 7.947282 ACAAATAAACGAAGGGAGATTTTCAA 58.053 30.769 0.00 0.00 0.00 2.69
2345 3482 7.519032 ACAAATAAACGAAGGGAGATTTTCA 57.481 32.000 0.00 0.00 0.00 2.69
2346 3483 8.297426 AGAACAAATAAACGAAGGGAGATTTTC 58.703 33.333 0.00 0.00 0.00 2.29
2347 3484 8.178313 AGAACAAATAAACGAAGGGAGATTTT 57.822 30.769 0.00 0.00 0.00 1.82
2348 3485 7.094334 GGAGAACAAATAAACGAAGGGAGATTT 60.094 37.037 0.00 0.00 0.00 2.17
2349 3486 6.374613 GGAGAACAAATAAACGAAGGGAGATT 59.625 38.462 0.00 0.00 0.00 2.40
2350 3487 5.880887 GGAGAACAAATAAACGAAGGGAGAT 59.119 40.000 0.00 0.00 0.00 2.75
2351 3488 5.243207 GGAGAACAAATAAACGAAGGGAGA 58.757 41.667 0.00 0.00 0.00 3.71
2352 3489 4.395231 GGGAGAACAAATAAACGAAGGGAG 59.605 45.833 0.00 0.00 0.00 4.30
2353 3490 4.042435 AGGGAGAACAAATAAACGAAGGGA 59.958 41.667 0.00 0.00 0.00 4.20
2354 3491 4.332828 AGGGAGAACAAATAAACGAAGGG 58.667 43.478 0.00 0.00 0.00 3.95
2355 3492 5.935789 TGTAGGGAGAACAAATAAACGAAGG 59.064 40.000 0.00 0.00 0.00 3.46
2356 3493 7.611213 ATGTAGGGAGAACAAATAAACGAAG 57.389 36.000 0.00 0.00 0.00 3.79
2357 3494 7.989416 AATGTAGGGAGAACAAATAAACGAA 57.011 32.000 0.00 0.00 0.00 3.85
2358 3495 7.767198 CCTAATGTAGGGAGAACAAATAAACGA 59.233 37.037 0.00 0.00 42.42 3.85
2359 3496 7.916552 CCTAATGTAGGGAGAACAAATAAACG 58.083 38.462 0.00 0.00 42.42 3.60
2375 3512 5.872635 TGACTTACGACGAACCTAATGTAG 58.127 41.667 0.00 0.00 0.00 2.74
2376 3513 5.878332 TGACTTACGACGAACCTAATGTA 57.122 39.130 0.00 0.00 0.00 2.29
2377 3514 4.771590 TGACTTACGACGAACCTAATGT 57.228 40.909 0.00 0.00 0.00 2.71
2378 3515 6.642683 ATTTGACTTACGACGAACCTAATG 57.357 37.500 0.00 0.00 0.00 1.90
2379 3516 7.662604 AAATTTGACTTACGACGAACCTAAT 57.337 32.000 0.00 0.00 0.00 1.73
2380 3517 8.761575 ATAAATTTGACTTACGACGAACCTAA 57.238 30.769 0.00 0.00 0.00 2.69
2381 3518 9.853555 TTATAAATTTGACTTACGACGAACCTA 57.146 29.630 0.00 0.00 0.00 3.08
2382 3519 8.761575 TTATAAATTTGACTTACGACGAACCT 57.238 30.769 0.00 0.00 0.00 3.50
2383 3520 9.469239 CTTTATAAATTTGACTTACGACGAACC 57.531 33.333 0.00 0.00 0.00 3.62
2429 3566 8.995027 TGGTATTGTGGATCTTGCTATTTTAT 57.005 30.769 0.00 0.00 0.00 1.40
2430 3567 8.815565 TTGGTATTGTGGATCTTGCTATTTTA 57.184 30.769 0.00 0.00 0.00 1.52
2431 3568 7.716799 TTGGTATTGTGGATCTTGCTATTTT 57.283 32.000 0.00 0.00 0.00 1.82
2432 3569 7.716799 TTTGGTATTGTGGATCTTGCTATTT 57.283 32.000 0.00 0.00 0.00 1.40
2433 3570 7.902920 ATTTGGTATTGTGGATCTTGCTATT 57.097 32.000 0.00 0.00 0.00 1.73
2434 3571 8.995027 TTATTTGGTATTGTGGATCTTGCTAT 57.005 30.769 0.00 0.00 0.00 2.97
2435 3572 8.815565 TTTATTTGGTATTGTGGATCTTGCTA 57.184 30.769 0.00 0.00 0.00 3.49
2436 3573 7.716799 TTTATTTGGTATTGTGGATCTTGCT 57.283 32.000 0.00 0.00 0.00 3.91
2515 3652 9.936759 AGAAGTTTGACAAAGTTTATCCAAAAA 57.063 25.926 19.45 0.00 34.32 1.94
2516 3653 9.936759 AAGAAGTTTGACAAAGTTTATCCAAAA 57.063 25.926 19.45 0.00 34.32 2.44
2517 3654 9.364989 CAAGAAGTTTGACAAAGTTTATCCAAA 57.635 29.630 19.45 0.00 34.32 3.28
2518 3655 8.744652 TCAAGAAGTTTGACAAAGTTTATCCAA 58.255 29.630 19.45 4.51 34.32 3.53
2519 3656 8.287439 TCAAGAAGTTTGACAAAGTTTATCCA 57.713 30.769 19.45 4.03 34.32 3.41
2520 3657 9.581099 TTTCAAGAAGTTTGACAAAGTTTATCC 57.419 29.630 19.45 8.96 34.32 2.59
2522 3659 9.921637 TGTTTCAAGAAGTTTGACAAAGTTTAT 57.078 25.926 19.45 10.64 34.32 1.40
2523 3660 9.751542 TTGTTTCAAGAAGTTTGACAAAGTTTA 57.248 25.926 19.45 6.20 34.32 2.01
2524 3661 8.655651 TTGTTTCAAGAAGTTTGACAAAGTTT 57.344 26.923 19.45 9.31 34.32 2.66
2525 3662 8.655651 TTTGTTTCAAGAAGTTTGACAAAGTT 57.344 26.923 18.72 18.72 36.76 2.66
2526 3663 8.547894 GTTTTGTTTCAAGAAGTTTGACAAAGT 58.452 29.630 0.00 0.99 31.02 2.66
2527 3664 8.009409 GGTTTTGTTTCAAGAAGTTTGACAAAG 58.991 33.333 0.00 0.00 31.02 2.77
2528 3665 7.713073 AGGTTTTGTTTCAAGAAGTTTGACAAA 59.287 29.630 0.00 0.00 0.00 2.83
2529 3666 7.213678 AGGTTTTGTTTCAAGAAGTTTGACAA 58.786 30.769 0.00 0.00 0.00 3.18
2530 3667 6.754193 AGGTTTTGTTTCAAGAAGTTTGACA 58.246 32.000 0.00 0.00 0.00 3.58
2531 3668 8.751302 TTAGGTTTTGTTTCAAGAAGTTTGAC 57.249 30.769 0.00 0.00 0.00 3.18
2535 3672 9.476202 GCATATTAGGTTTTGTTTCAAGAAGTT 57.524 29.630 0.00 0.00 0.00 2.66
2536 3673 7.807907 CGCATATTAGGTTTTGTTTCAAGAAGT 59.192 33.333 0.00 0.00 0.00 3.01
2537 3674 8.020819 TCGCATATTAGGTTTTGTTTCAAGAAG 58.979 33.333 0.00 0.00 0.00 2.85
2538 3675 7.877003 TCGCATATTAGGTTTTGTTTCAAGAA 58.123 30.769 0.00 0.00 0.00 2.52
2539 3676 7.441890 TCGCATATTAGGTTTTGTTTCAAGA 57.558 32.000 0.00 0.00 0.00 3.02
2540 3677 7.807907 ACTTCGCATATTAGGTTTTGTTTCAAG 59.192 33.333 0.00 0.00 0.00 3.02
2541 3678 7.653647 ACTTCGCATATTAGGTTTTGTTTCAA 58.346 30.769 0.00 0.00 0.00 2.69
2542 3679 7.209471 ACTTCGCATATTAGGTTTTGTTTCA 57.791 32.000 0.00 0.00 0.00 2.69
2543 3680 9.615295 TTTACTTCGCATATTAGGTTTTGTTTC 57.385 29.630 0.00 0.00 0.00 2.78
2544 3681 9.968870 TTTTACTTCGCATATTAGGTTTTGTTT 57.031 25.926 0.00 0.00 0.00 2.83
2545 3682 9.968870 TTTTTACTTCGCATATTAGGTTTTGTT 57.031 25.926 0.00 0.00 0.00 2.83
2571 3708 6.502074 AACAGAAGAGGGAGTAGTCTTTTT 57.498 37.500 0.00 0.00 33.04 1.94
2572 3709 6.502074 AAACAGAAGAGGGAGTAGTCTTTT 57.498 37.500 0.00 0.00 33.04 2.27
2573 3710 6.553852 TGTAAACAGAAGAGGGAGTAGTCTTT 59.446 38.462 0.00 0.00 33.04 2.52
2574 3711 6.075984 TGTAAACAGAAGAGGGAGTAGTCTT 58.924 40.000 0.00 0.00 35.67 3.01
2575 3712 5.642165 TGTAAACAGAAGAGGGAGTAGTCT 58.358 41.667 0.00 0.00 0.00 3.24
2576 3713 5.979288 TGTAAACAGAAGAGGGAGTAGTC 57.021 43.478 0.00 0.00 0.00 2.59
2577 3714 6.742559 TTTGTAAACAGAAGAGGGAGTAGT 57.257 37.500 0.00 0.00 0.00 2.73
2578 3715 7.162082 ACATTTGTAAACAGAAGAGGGAGTAG 58.838 38.462 0.00 0.00 0.00 2.57
2579 3716 7.074653 ACATTTGTAAACAGAAGAGGGAGTA 57.925 36.000 0.00 0.00 0.00 2.59
2580 3717 5.941788 ACATTTGTAAACAGAAGAGGGAGT 58.058 37.500 0.00 0.00 0.00 3.85
2581 3718 7.979444 TTACATTTGTAAACAGAAGAGGGAG 57.021 36.000 0.74 0.00 37.54 4.30
2582 3719 8.626526 GTTTTACATTTGTAAACAGAAGAGGGA 58.373 33.333 13.88 0.00 46.48 4.20
2583 3720 7.589954 CGTTTTACATTTGTAAACAGAAGAGGG 59.410 37.037 13.88 0.00 46.48 4.30
2584 3721 8.126700 ACGTTTTACATTTGTAAACAGAAGAGG 58.873 33.333 13.88 7.91 46.48 3.69
2585 3722 9.498307 AACGTTTTACATTTGTAAACAGAAGAG 57.502 29.630 13.88 5.35 46.48 2.85
2586 3723 9.843334 AAACGTTTTACATTTGTAAACAGAAGA 57.157 25.926 7.96 0.00 46.48 2.87
2590 3727 8.980623 GCAAAAACGTTTTACATTTGTAAACAG 58.019 29.630 25.44 12.82 46.48 3.16
2591 3728 8.492748 TGCAAAAACGTTTTACATTTGTAAACA 58.507 25.926 25.44 10.46 46.48 2.83
2592 3729 8.861277 TGCAAAAACGTTTTACATTTGTAAAC 57.139 26.923 25.44 8.30 46.48 2.01
2593 3730 8.922676 TCTGCAAAAACGTTTTACATTTGTAAA 58.077 25.926 25.44 10.96 45.55 2.01
2594 3731 8.462143 TCTGCAAAAACGTTTTACATTTGTAA 57.538 26.923 25.44 11.59 38.60 2.41
2595 3732 8.462143 TTCTGCAAAAACGTTTTACATTTGTA 57.538 26.923 25.44 17.24 34.37 2.41
2596 3733 6.952935 TCTGCAAAAACGTTTTACATTTGT 57.047 29.167 25.44 6.38 34.37 2.83
2597 3734 6.407753 GCTTCTGCAAAAACGTTTTACATTTG 59.592 34.615 25.44 19.55 39.41 2.32
2598 3735 6.474364 GCTTCTGCAAAAACGTTTTACATTT 58.526 32.000 25.44 7.85 39.41 2.32
2599 3736 5.276161 CGCTTCTGCAAAAACGTTTTACATT 60.276 36.000 25.44 8.23 39.64 2.71
2600 3737 4.206200 CGCTTCTGCAAAAACGTTTTACAT 59.794 37.500 25.44 8.61 39.64 2.29
2601 3738 3.544285 CGCTTCTGCAAAAACGTTTTACA 59.456 39.130 25.44 23.01 39.64 2.41
2602 3739 3.544682 ACGCTTCTGCAAAAACGTTTTAC 59.455 39.130 25.44 20.06 39.64 2.01
2603 3740 3.760537 ACGCTTCTGCAAAAACGTTTTA 58.239 36.364 25.44 10.32 39.64 1.52
2604 3741 2.596862 GACGCTTCTGCAAAAACGTTTT 59.403 40.909 20.26 20.26 39.64 2.43
2605 3742 2.182014 GACGCTTCTGCAAAAACGTTT 58.818 42.857 7.96 7.96 39.64 3.60
2606 3743 1.533129 GGACGCTTCTGCAAAAACGTT 60.533 47.619 2.35 0.00 39.64 3.99
2607 3744 0.028902 GGACGCTTCTGCAAAAACGT 59.971 50.000 0.00 0.00 39.64 3.99
2608 3745 0.307760 AGGACGCTTCTGCAAAAACG 59.692 50.000 0.00 0.00 39.64 3.60
2609 3746 2.492019 AAGGACGCTTCTGCAAAAAC 57.508 45.000 0.00 0.00 39.64 2.43
2610 3747 2.808244 CAAAGGACGCTTCTGCAAAAA 58.192 42.857 0.00 0.00 39.64 1.94
2611 3748 1.535860 GCAAAGGACGCTTCTGCAAAA 60.536 47.619 0.00 0.00 39.64 2.44
2612 3749 0.030638 GCAAAGGACGCTTCTGCAAA 59.969 50.000 0.00 0.00 39.64 3.68
2613 3750 1.100463 TGCAAAGGACGCTTCTGCAA 61.100 50.000 3.52 0.00 39.91 4.08
2614 3751 1.100463 TTGCAAAGGACGCTTCTGCA 61.100 50.000 0.00 2.04 41.06 4.41
2615 3752 0.386478 CTTGCAAAGGACGCTTCTGC 60.386 55.000 0.00 0.00 41.27 4.26
2616 3753 0.386478 GCTTGCAAAGGACGCTTCTG 60.386 55.000 0.00 0.00 46.35 3.02
2617 3754 1.845809 CGCTTGCAAAGGACGCTTCT 61.846 55.000 0.00 0.00 46.35 2.85
2618 3755 1.441016 CGCTTGCAAAGGACGCTTC 60.441 57.895 0.00 0.00 46.35 3.86
2619 3756 2.639286 CGCTTGCAAAGGACGCTT 59.361 55.556 0.00 0.00 46.35 4.68
2620 3757 4.030452 GCGCTTGCAAAGGACGCT 62.030 61.111 21.40 0.00 46.89 5.07
2622 3759 0.594796 AAAAGCGCTTGCAAAGGACG 60.595 50.000 25.80 3.53 46.35 4.79
2623 3760 2.031157 TCTAAAAGCGCTTGCAAAGGAC 60.031 45.455 25.80 0.00 46.35 3.85
2624 3761 2.226330 TCTAAAAGCGCTTGCAAAGGA 58.774 42.857 25.80 13.05 46.35 3.36
2625 3762 2.589014 CTCTAAAAGCGCTTGCAAAGG 58.411 47.619 25.80 10.95 46.35 3.11
2626 3763 1.981533 GCTCTAAAAGCGCTTGCAAAG 59.018 47.619 25.80 19.04 44.25 2.77
2627 3764 2.050477 GCTCTAAAAGCGCTTGCAAA 57.950 45.000 25.80 9.32 42.21 3.68
2628 3765 3.773117 GCTCTAAAAGCGCTTGCAA 57.227 47.368 25.80 11.20 42.21 4.08
2637 3774 4.867608 GGTCTGCTAGAGTTGCTCTAAAAG 59.132 45.833 7.22 7.53 41.74 2.27
2638 3775 4.322801 GGGTCTGCTAGAGTTGCTCTAAAA 60.323 45.833 7.22 0.00 41.74 1.52
2639 3776 3.195825 GGGTCTGCTAGAGTTGCTCTAAA 59.804 47.826 7.22 0.00 41.74 1.85
2678 3815 3.921630 GCATTTTGGCGGTTATTTTACGT 59.078 39.130 0.00 0.00 0.00 3.57
2982 4135 3.011517 AAGGGAGGCCTCGTGCAT 61.012 61.111 26.36 7.80 43.89 3.96
3099 4259 2.710902 CGACCACTCCATCGCCTGA 61.711 63.158 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.