Multiple sequence alignment - TraesCS3B01G344700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G344700 chr3B 100.000 4538 0 0 1 4538 554546261 554550798 0.000000e+00 8381.0
1 TraesCS3B01G344700 chr3B 92.336 274 16 3 3 271 5544628 5544901 7.120000e-103 385.0
2 TraesCS3B01G344700 chr3B 75.170 882 179 30 2255 3114 4506982 4507845 3.310000e-101 379.0
3 TraesCS3B01G344700 chr3B 74.499 898 175 39 2255 3125 11939371 11938501 1.560000e-89 340.0
4 TraesCS3B01G344700 chr3B 91.935 62 1 3 843 900 40184939 40184878 2.910000e-12 84.2
5 TraesCS3B01G344700 chr3B 90.909 55 2 2 845 896 485387352 485387298 2.260000e-08 71.3
6 TraesCS3B01G344700 chr1B 96.067 1856 54 7 2684 4538 118140650 118142487 0.000000e+00 3005.0
7 TraesCS3B01G344700 chr1B 97.386 459 12 0 2133 2591 118140192 118140650 0.000000e+00 782.0
8 TraesCS3B01G344700 chr1B 93.333 270 17 1 3 271 134667268 134667537 9.150000e-107 398.0
9 TraesCS3B01G344700 chr1B 91.852 270 21 1 3 271 51004972 51005241 4.290000e-100 375.0
10 TraesCS3B01G344700 chr1B 74.607 890 187 35 2255 3125 680758200 680757331 5.580000e-94 355.0
11 TraesCS3B01G344700 chr7A 94.084 1572 88 5 2967 4537 96116883 96118450 0.000000e+00 2383.0
12 TraesCS3B01G344700 chr7A 92.747 841 61 0 2133 2973 96098737 96099577 0.000000e+00 1216.0
13 TraesCS3B01G344700 chr3D 96.599 1235 37 5 896 2127 424590139 424591371 0.000000e+00 2043.0
14 TraesCS3B01G344700 chr3D 92.754 483 28 5 270 747 424497452 424497932 0.000000e+00 691.0
15 TraesCS3B01G344700 chr3D 88.235 272 28 3 1 269 355747369 355747639 5.660000e-84 322.0
16 TraesCS3B01G344700 chr3D 96.429 56 2 0 792 847 424590083 424590138 4.830000e-15 93.5
17 TraesCS3B01G344700 chr3D 94.340 53 2 1 845 896 574387771 574387823 3.760000e-11 80.5
18 TraesCS3B01G344700 chr3D 91.379 58 0 2 844 896 502052267 502052324 1.750000e-09 75.0
19 TraesCS3B01G344700 chr2A 86.967 1266 163 2 3273 4537 195585124 195583860 0.000000e+00 1423.0
20 TraesCS3B01G344700 chrUn 86.335 1266 171 2 3273 4537 88115494 88114230 0.000000e+00 1378.0
21 TraesCS3B01G344700 chr5A 89.417 1115 83 11 997 2110 45455582 45456662 0.000000e+00 1373.0
22 TraesCS3B01G344700 chr5A 80.628 764 139 6 3773 4531 607308475 607309234 2.350000e-162 582.0
23 TraesCS3B01G344700 chr5A 100.000 44 0 0 956 999 45451237 45451280 1.050000e-11 82.4
24 TraesCS3B01G344700 chr5A 87.500 56 1 2 837 892 576086671 576086720 4.900000e-05 60.2
25 TraesCS3B01G344700 chr6B 86.256 1266 170 3 3273 4537 432366836 432368098 0.000000e+00 1371.0
26 TraesCS3B01G344700 chr6B 81.308 107 20 0 4323 4429 484093477 484093371 2.250000e-13 87.9
27 TraesCS3B01G344700 chr5B 88.938 1130 89 12 1000 2121 61058658 61057557 0.000000e+00 1362.0
28 TraesCS3B01G344700 chr5B 78.805 519 105 5 2695 3211 664472669 664472154 1.210000e-90 344.0
29 TraesCS3B01G344700 chr5B 90.566 53 2 2 845 896 711188677 711188627 2.930000e-07 67.6
30 TraesCS3B01G344700 chr2B 86.019 1266 175 2 3273 4537 598575759 598574495 0.000000e+00 1356.0
31 TraesCS3B01G344700 chr2B 74.294 1027 226 32 2202 3208 25746491 25747499 2.540000e-107 399.0
32 TraesCS3B01G344700 chr2B 96.429 56 2 0 846 901 749908545 749908600 4.830000e-15 93.5
33 TraesCS3B01G344700 chr2B 87.273 55 5 2 827 879 439892877 439892823 1.360000e-05 62.1
34 TraesCS3B01G344700 chr5D 90.335 1014 76 8 1108 2121 57232748 57233739 0.000000e+00 1310.0
35 TraesCS3B01G344700 chr5D 96.078 153 4 1 958 1108 57227073 57227225 9.750000e-62 248.0
36 TraesCS3B01G344700 chr6A 84.634 1269 167 5 3272 4537 27182404 27183647 0.000000e+00 1238.0
37 TraesCS3B01G344700 chr6A 89.179 268 25 1 3 266 604853928 604854195 9.410000e-87 331.0
38 TraesCS3B01G344700 chr3A 94.459 740 35 4 897 1635 564395792 564395058 0.000000e+00 1134.0
39 TraesCS3B01G344700 chr3A 95.510 490 22 0 1628 2117 564394891 564394402 0.000000e+00 784.0
40 TraesCS3B01G344700 chr3A 86.604 530 30 13 270 775 564396345 564395833 8.580000e-152 547.0
41 TraesCS3B01G344700 chr3A 91.603 131 11 0 1210 1340 684768532 684768402 1.000000e-41 182.0
42 TraesCS3B01G344700 chr3A 91.870 123 10 0 1210 1332 684771305 684771183 6.040000e-39 172.0
43 TraesCS3B01G344700 chr7D 79.227 1112 172 43 1029 2109 484459863 484458780 0.000000e+00 719.0
44 TraesCS3B01G344700 chr7D 94.828 58 0 3 845 900 400855178 400855234 2.250000e-13 87.9
45 TraesCS3B01G344700 chr7B 79.465 823 159 10 3689 4507 594019345 594018529 3.940000e-160 575.0
46 TraesCS3B01G344700 chr7B 74.280 972 211 33 2256 3208 322186601 322187552 1.540000e-99 374.0
47 TraesCS3B01G344700 chr4A 92.565 269 20 0 3 271 608365100 608365368 1.980000e-103 387.0
48 TraesCS3B01G344700 chr4B 92.623 244 17 1 29 271 148210429 148210186 2.600000e-92 350.0
49 TraesCS3B01G344700 chr2D 90.299 268 25 1 3 269 106869136 106868869 2.600000e-92 350.0
50 TraesCS3B01G344700 chr1A 89.925 268 26 1 3 269 30643760 30644027 1.210000e-90 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G344700 chr3B 554546261 554550798 4537 False 8381.000000 8381 100.0000 1 4538 1 chr3B.!!$F3 4537
1 TraesCS3B01G344700 chr3B 4506982 4507845 863 False 379.000000 379 75.1700 2255 3114 1 chr3B.!!$F1 859
2 TraesCS3B01G344700 chr3B 11938501 11939371 870 True 340.000000 340 74.4990 2255 3125 1 chr3B.!!$R1 870
3 TraesCS3B01G344700 chr1B 118140192 118142487 2295 False 1893.500000 3005 96.7265 2133 4538 2 chr1B.!!$F3 2405
4 TraesCS3B01G344700 chr1B 680757331 680758200 869 True 355.000000 355 74.6070 2255 3125 1 chr1B.!!$R1 870
5 TraesCS3B01G344700 chr7A 96116883 96118450 1567 False 2383.000000 2383 94.0840 2967 4537 1 chr7A.!!$F2 1570
6 TraesCS3B01G344700 chr7A 96098737 96099577 840 False 1216.000000 1216 92.7470 2133 2973 1 chr7A.!!$F1 840
7 TraesCS3B01G344700 chr3D 424590083 424591371 1288 False 1068.250000 2043 96.5140 792 2127 2 chr3D.!!$F5 1335
8 TraesCS3B01G344700 chr2A 195583860 195585124 1264 True 1423.000000 1423 86.9670 3273 4537 1 chr2A.!!$R1 1264
9 TraesCS3B01G344700 chrUn 88114230 88115494 1264 True 1378.000000 1378 86.3350 3273 4537 1 chrUn.!!$R1 1264
10 TraesCS3B01G344700 chr5A 45455582 45456662 1080 False 1373.000000 1373 89.4170 997 2110 1 chr5A.!!$F2 1113
11 TraesCS3B01G344700 chr5A 607308475 607309234 759 False 582.000000 582 80.6280 3773 4531 1 chr5A.!!$F4 758
12 TraesCS3B01G344700 chr6B 432366836 432368098 1262 False 1371.000000 1371 86.2560 3273 4537 1 chr6B.!!$F1 1264
13 TraesCS3B01G344700 chr5B 61057557 61058658 1101 True 1362.000000 1362 88.9380 1000 2121 1 chr5B.!!$R1 1121
14 TraesCS3B01G344700 chr5B 664472154 664472669 515 True 344.000000 344 78.8050 2695 3211 1 chr5B.!!$R2 516
15 TraesCS3B01G344700 chr2B 598574495 598575759 1264 True 1356.000000 1356 86.0190 3273 4537 1 chr2B.!!$R2 1264
16 TraesCS3B01G344700 chr2B 25746491 25747499 1008 False 399.000000 399 74.2940 2202 3208 1 chr2B.!!$F1 1006
17 TraesCS3B01G344700 chr5D 57232748 57233739 991 False 1310.000000 1310 90.3350 1108 2121 1 chr5D.!!$F2 1013
18 TraesCS3B01G344700 chr6A 27182404 27183647 1243 False 1238.000000 1238 84.6340 3272 4537 1 chr6A.!!$F1 1265
19 TraesCS3B01G344700 chr3A 564394402 564396345 1943 True 821.666667 1134 92.1910 270 2117 3 chr3A.!!$R1 1847
20 TraesCS3B01G344700 chr7D 484458780 484459863 1083 True 719.000000 719 79.2270 1029 2109 1 chr7D.!!$R1 1080
21 TraesCS3B01G344700 chr7B 594018529 594019345 816 True 575.000000 575 79.4650 3689 4507 1 chr7B.!!$R1 818
22 TraesCS3B01G344700 chr7B 322186601 322187552 951 False 374.000000 374 74.2800 2256 3208 1 chr7B.!!$F1 952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.036875 GGACCAAGTGGAACCCTCAG 59.963 60.000 3.83 0.00 37.80 3.35 F
236 237 0.109597 GCACGCCCTCAAAGACAATG 60.110 55.000 0.00 0.00 0.00 2.82 F
1246 1276 0.250081 GCTATCTTAGGCGCCTTGCT 60.250 55.000 37.74 21.07 45.43 3.91 F
1362 1392 0.395312 CCGTTGGGCTCCGGTAATAT 59.605 55.000 0.00 0.00 39.38 1.28 F
2643 2902 1.279846 TCCCTGGTATTTCAACCCGAC 59.720 52.381 0.00 0.00 38.90 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1392 0.443869 GTCGTCGTAGTAACTGCCGA 59.556 55.000 0.00 0.00 0.00 5.54 R
1612 1648 0.531200 GGAACGAGGGTGTCCTGTAG 59.469 60.000 0.00 0.00 45.05 2.74 R
2643 2902 0.327924 TGACCATGGTTAGGCTGTGG 59.672 55.000 20.85 0.15 36.06 4.17 R
2739 3003 1.078848 GCTCATGGACTTGTCCGCT 60.079 57.895 14.24 2.59 0.00 5.52 R
4507 4777 0.249868 CGGAGCCGATAATTCCTGCA 60.250 55.000 2.00 0.00 42.83 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.949842 AAGAAGAAAGGCCAAGAATGC 57.050 42.857 5.01 0.00 0.00 3.56
59 60 4.692930 GGCCAAGAATGCCTCCAT 57.307 55.556 0.00 0.00 45.70 3.41
60 61 2.423388 GGCCAAGAATGCCTCCATC 58.577 57.895 0.00 0.00 45.70 3.51
61 62 0.396139 GGCCAAGAATGCCTCCATCA 60.396 55.000 0.00 0.00 45.70 3.07
62 63 1.700955 GCCAAGAATGCCTCCATCAT 58.299 50.000 0.00 0.00 0.00 2.45
63 64 2.489619 GGCCAAGAATGCCTCCATCATA 60.490 50.000 0.00 0.00 45.70 2.15
64 65 2.818432 GCCAAGAATGCCTCCATCATAG 59.182 50.000 0.00 0.00 0.00 2.23
65 66 3.749954 GCCAAGAATGCCTCCATCATAGT 60.750 47.826 0.00 0.00 0.00 2.12
66 67 4.467769 CCAAGAATGCCTCCATCATAGTT 58.532 43.478 0.00 0.00 0.00 2.24
67 68 4.891756 CCAAGAATGCCTCCATCATAGTTT 59.108 41.667 0.00 0.00 0.00 2.66
68 69 5.221185 CCAAGAATGCCTCCATCATAGTTTG 60.221 44.000 0.00 0.00 0.00 2.93
69 70 3.887716 AGAATGCCTCCATCATAGTTTGC 59.112 43.478 0.00 0.00 0.00 3.68
70 71 2.804986 TGCCTCCATCATAGTTTGCA 57.195 45.000 0.00 0.00 0.00 4.08
71 72 2.646930 TGCCTCCATCATAGTTTGCAG 58.353 47.619 0.00 0.00 0.00 4.41
72 73 1.952296 GCCTCCATCATAGTTTGCAGG 59.048 52.381 0.00 0.00 0.00 4.85
73 74 2.579873 CCTCCATCATAGTTTGCAGGG 58.420 52.381 0.00 0.00 0.00 4.45
74 75 1.952296 CTCCATCATAGTTTGCAGGGC 59.048 52.381 0.00 0.00 0.00 5.19
75 76 1.565759 TCCATCATAGTTTGCAGGGCT 59.434 47.619 0.00 0.00 0.00 5.19
76 77 1.679680 CCATCATAGTTTGCAGGGCTG 59.320 52.381 0.00 0.00 0.00 4.85
77 78 2.372264 CATCATAGTTTGCAGGGCTGT 58.628 47.619 0.00 0.00 0.00 4.40
78 79 2.584835 TCATAGTTTGCAGGGCTGTT 57.415 45.000 0.00 0.00 0.00 3.16
79 80 2.875296 TCATAGTTTGCAGGGCTGTTT 58.125 42.857 0.00 0.00 0.00 2.83
80 81 3.230134 TCATAGTTTGCAGGGCTGTTTT 58.770 40.909 0.00 0.00 0.00 2.43
81 82 4.402829 TCATAGTTTGCAGGGCTGTTTTA 58.597 39.130 0.00 0.00 0.00 1.52
82 83 4.217550 TCATAGTTTGCAGGGCTGTTTTAC 59.782 41.667 0.00 0.00 0.00 2.01
83 84 2.383855 AGTTTGCAGGGCTGTTTTACA 58.616 42.857 0.00 0.00 0.00 2.41
84 85 2.965147 AGTTTGCAGGGCTGTTTTACAT 59.035 40.909 0.00 0.00 0.00 2.29
85 86 3.059166 GTTTGCAGGGCTGTTTTACATG 58.941 45.455 0.00 0.00 0.00 3.21
86 87 0.602562 TGCAGGGCTGTTTTACATGC 59.397 50.000 0.00 0.00 32.64 4.06
87 88 0.890683 GCAGGGCTGTTTTACATGCT 59.109 50.000 0.00 0.00 30.21 3.79
88 89 2.091541 GCAGGGCTGTTTTACATGCTA 58.908 47.619 0.00 0.00 30.21 3.49
89 90 2.491693 GCAGGGCTGTTTTACATGCTAA 59.508 45.455 0.00 0.00 30.21 3.09
90 91 3.131046 GCAGGGCTGTTTTACATGCTAAT 59.869 43.478 0.00 0.00 30.21 1.73
91 92 4.734695 GCAGGGCTGTTTTACATGCTAATC 60.735 45.833 0.00 0.00 30.21 1.75
92 93 3.954258 AGGGCTGTTTTACATGCTAATCC 59.046 43.478 0.00 0.00 0.00 3.01
93 94 3.954258 GGGCTGTTTTACATGCTAATCCT 59.046 43.478 0.00 0.00 0.00 3.24
94 95 4.036852 GGGCTGTTTTACATGCTAATCCTC 59.963 45.833 0.00 0.00 0.00 3.71
95 96 4.640201 GGCTGTTTTACATGCTAATCCTCA 59.360 41.667 0.00 0.00 0.00 3.86
96 97 5.300286 GGCTGTTTTACATGCTAATCCTCAT 59.700 40.000 0.00 0.00 0.00 2.90
97 98 6.433766 GCTGTTTTACATGCTAATCCTCATC 58.566 40.000 0.00 0.00 0.00 2.92
98 99 6.038603 GCTGTTTTACATGCTAATCCTCATCA 59.961 38.462 0.00 0.00 0.00 3.07
99 100 7.255381 GCTGTTTTACATGCTAATCCTCATCAT 60.255 37.037 0.00 0.00 0.00 2.45
100 101 8.523915 TGTTTTACATGCTAATCCTCATCATT 57.476 30.769 0.00 0.00 0.00 2.57
101 102 8.623903 TGTTTTACATGCTAATCCTCATCATTC 58.376 33.333 0.00 0.00 0.00 2.67
102 103 8.623903 GTTTTACATGCTAATCCTCATCATTCA 58.376 33.333 0.00 0.00 0.00 2.57
103 104 7.734924 TTACATGCTAATCCTCATCATTCAC 57.265 36.000 0.00 0.00 0.00 3.18
104 105 5.068636 ACATGCTAATCCTCATCATTCACC 58.931 41.667 0.00 0.00 0.00 4.02
105 106 3.732212 TGCTAATCCTCATCATTCACCG 58.268 45.455 0.00 0.00 0.00 4.94
106 107 3.387699 TGCTAATCCTCATCATTCACCGA 59.612 43.478 0.00 0.00 0.00 4.69
107 108 3.743396 GCTAATCCTCATCATTCACCGAC 59.257 47.826 0.00 0.00 0.00 4.79
108 109 2.918712 ATCCTCATCATTCACCGACC 57.081 50.000 0.00 0.00 0.00 4.79
109 110 1.866015 TCCTCATCATTCACCGACCT 58.134 50.000 0.00 0.00 0.00 3.85
110 111 1.757118 TCCTCATCATTCACCGACCTC 59.243 52.381 0.00 0.00 0.00 3.85
111 112 1.759445 CCTCATCATTCACCGACCTCT 59.241 52.381 0.00 0.00 0.00 3.69
112 113 2.223923 CCTCATCATTCACCGACCTCTC 60.224 54.545 0.00 0.00 0.00 3.20
113 114 2.692557 CTCATCATTCACCGACCTCTCT 59.307 50.000 0.00 0.00 0.00 3.10
114 115 3.885901 CTCATCATTCACCGACCTCTCTA 59.114 47.826 0.00 0.00 0.00 2.43
115 116 3.632604 TCATCATTCACCGACCTCTCTAC 59.367 47.826 0.00 0.00 0.00 2.59
116 117 2.376109 TCATTCACCGACCTCTCTACC 58.624 52.381 0.00 0.00 0.00 3.18
117 118 1.409427 CATTCACCGACCTCTCTACCC 59.591 57.143 0.00 0.00 0.00 3.69
118 119 0.702902 TTCACCGACCTCTCTACCCT 59.297 55.000 0.00 0.00 0.00 4.34
119 120 1.588239 TCACCGACCTCTCTACCCTA 58.412 55.000 0.00 0.00 0.00 3.53
120 121 1.489649 TCACCGACCTCTCTACCCTAG 59.510 57.143 0.00 0.00 0.00 3.02
121 122 0.183252 ACCGACCTCTCTACCCTAGC 59.817 60.000 0.00 0.00 0.00 3.42
122 123 0.183014 CCGACCTCTCTACCCTAGCA 59.817 60.000 0.00 0.00 0.00 3.49
123 124 1.409802 CCGACCTCTCTACCCTAGCAA 60.410 57.143 0.00 0.00 0.00 3.91
124 125 2.376109 CGACCTCTCTACCCTAGCAAA 58.624 52.381 0.00 0.00 0.00 3.68
125 126 2.359531 CGACCTCTCTACCCTAGCAAAG 59.640 54.545 0.00 0.00 0.00 2.77
126 127 3.633418 GACCTCTCTACCCTAGCAAAGA 58.367 50.000 0.00 0.00 0.00 2.52
127 128 4.024670 GACCTCTCTACCCTAGCAAAGAA 58.975 47.826 0.00 0.00 0.00 2.52
128 129 4.426704 ACCTCTCTACCCTAGCAAAGAAA 58.573 43.478 0.00 0.00 0.00 2.52
129 130 4.468153 ACCTCTCTACCCTAGCAAAGAAAG 59.532 45.833 0.00 0.00 0.00 2.62
130 131 4.141824 CCTCTCTACCCTAGCAAAGAAAGG 60.142 50.000 0.00 0.00 0.00 3.11
131 132 3.197983 TCTCTACCCTAGCAAAGAAAGGC 59.802 47.826 0.00 0.00 0.00 4.35
132 133 2.910319 TCTACCCTAGCAAAGAAAGGCA 59.090 45.455 0.00 0.00 0.00 4.75
133 134 2.907458 ACCCTAGCAAAGAAAGGCAT 57.093 45.000 0.00 0.00 0.00 4.40
134 135 3.175438 ACCCTAGCAAAGAAAGGCATT 57.825 42.857 0.00 0.00 0.00 3.56
135 136 4.316025 ACCCTAGCAAAGAAAGGCATTA 57.684 40.909 0.00 0.00 0.00 1.90
136 137 4.017126 ACCCTAGCAAAGAAAGGCATTAC 58.983 43.478 0.00 0.00 0.00 1.89
137 138 4.016444 CCCTAGCAAAGAAAGGCATTACA 58.984 43.478 0.00 0.00 0.00 2.41
138 139 4.646492 CCCTAGCAAAGAAAGGCATTACAT 59.354 41.667 0.00 0.00 0.00 2.29
139 140 5.127682 CCCTAGCAAAGAAAGGCATTACATT 59.872 40.000 0.00 0.00 0.00 2.71
140 141 6.351286 CCCTAGCAAAGAAAGGCATTACATTT 60.351 38.462 0.00 0.00 0.00 2.32
141 142 6.753744 CCTAGCAAAGAAAGGCATTACATTTC 59.246 38.462 0.00 0.00 33.97 2.17
142 143 5.482006 AGCAAAGAAAGGCATTACATTTCC 58.518 37.500 0.00 0.00 34.23 3.13
143 144 5.246883 AGCAAAGAAAGGCATTACATTTCCT 59.753 36.000 0.00 0.00 34.23 3.36
144 145 5.934043 GCAAAGAAAGGCATTACATTTCCTT 59.066 36.000 0.00 0.00 40.39 3.36
152 153 9.435688 AAAGGCATTACATTTCCTTTCAATAAC 57.564 29.630 0.00 0.00 43.28 1.89
153 154 7.555965 AGGCATTACATTTCCTTTCAATAACC 58.444 34.615 0.00 0.00 0.00 2.85
154 155 6.761242 GGCATTACATTTCCTTTCAATAACCC 59.239 38.462 0.00 0.00 0.00 4.11
155 156 7.327214 GCATTACATTTCCTTTCAATAACCCA 58.673 34.615 0.00 0.00 0.00 4.51
156 157 7.821846 GCATTACATTTCCTTTCAATAACCCAA 59.178 33.333 0.00 0.00 0.00 4.12
157 158 9.150348 CATTACATTTCCTTTCAATAACCCAAC 57.850 33.333 0.00 0.00 0.00 3.77
158 159 5.778862 ACATTTCCTTTCAATAACCCAACG 58.221 37.500 0.00 0.00 0.00 4.10
159 160 4.857509 TTTCCTTTCAATAACCCAACGG 57.142 40.909 0.00 0.00 0.00 4.44
160 161 3.791953 TCCTTTCAATAACCCAACGGA 57.208 42.857 0.00 0.00 0.00 4.69
161 162 3.681593 TCCTTTCAATAACCCAACGGAG 58.318 45.455 0.00 0.00 0.00 4.63
162 163 2.752903 CCTTTCAATAACCCAACGGAGG 59.247 50.000 0.00 0.00 0.00 4.30
163 164 3.560453 CCTTTCAATAACCCAACGGAGGA 60.560 47.826 0.00 0.00 0.00 3.71
164 165 2.773993 TCAATAACCCAACGGAGGAC 57.226 50.000 0.00 0.00 0.00 3.85
165 166 1.279846 TCAATAACCCAACGGAGGACC 59.720 52.381 0.00 0.00 0.00 4.46
166 167 1.003812 CAATAACCCAACGGAGGACCA 59.996 52.381 0.00 0.00 35.59 4.02
167 168 1.364269 ATAACCCAACGGAGGACCAA 58.636 50.000 0.00 0.00 35.59 3.67
168 169 0.688487 TAACCCAACGGAGGACCAAG 59.312 55.000 0.00 0.00 35.59 3.61
169 170 1.350310 AACCCAACGGAGGACCAAGT 61.350 55.000 0.00 0.00 35.59 3.16
170 171 1.302511 CCCAACGGAGGACCAAGTG 60.303 63.158 0.00 0.00 35.59 3.16
171 172 1.302511 CCAACGGAGGACCAAGTGG 60.303 63.158 0.00 0.00 42.17 4.00
172 173 1.752198 CAACGGAGGACCAAGTGGA 59.248 57.895 3.83 0.00 38.94 4.02
173 174 0.107831 CAACGGAGGACCAAGTGGAA 59.892 55.000 3.83 0.00 38.94 3.53
174 175 0.108019 AACGGAGGACCAAGTGGAAC 59.892 55.000 3.83 0.00 38.94 3.62
175 176 1.003718 CGGAGGACCAAGTGGAACC 60.004 63.158 3.83 7.22 38.94 3.62
176 177 1.379146 GGAGGACCAAGTGGAACCC 59.621 63.158 3.83 2.50 38.94 4.11
177 178 1.134438 GGAGGACCAAGTGGAACCCT 61.134 60.000 3.83 7.30 38.94 4.34
178 179 0.325272 GAGGACCAAGTGGAACCCTC 59.675 60.000 16.39 16.39 39.97 4.30
179 180 0.401395 AGGACCAAGTGGAACCCTCA 60.401 55.000 3.83 0.00 37.80 3.86
180 181 0.036875 GGACCAAGTGGAACCCTCAG 59.963 60.000 3.83 0.00 37.80 3.35
181 182 1.056660 GACCAAGTGGAACCCTCAGA 58.943 55.000 3.83 0.00 37.80 3.27
182 183 1.420138 GACCAAGTGGAACCCTCAGAA 59.580 52.381 3.83 0.00 37.80 3.02
183 184 1.143073 ACCAAGTGGAACCCTCAGAAC 59.857 52.381 3.83 0.00 37.80 3.01
184 185 1.142870 CCAAGTGGAACCCTCAGAACA 59.857 52.381 0.00 0.00 37.80 3.18
185 186 2.222027 CAAGTGGAACCCTCAGAACAC 58.778 52.381 0.00 0.00 37.80 3.32
186 187 1.507140 AGTGGAACCCTCAGAACACA 58.493 50.000 0.00 0.00 37.80 3.72
187 188 1.843851 AGTGGAACCCTCAGAACACAA 59.156 47.619 0.00 0.00 37.80 3.33
188 189 1.947456 GTGGAACCCTCAGAACACAAC 59.053 52.381 0.00 0.00 0.00 3.32
189 190 1.843851 TGGAACCCTCAGAACACAACT 59.156 47.619 0.00 0.00 0.00 3.16
190 191 2.241176 TGGAACCCTCAGAACACAACTT 59.759 45.455 0.00 0.00 0.00 2.66
191 192 3.288092 GGAACCCTCAGAACACAACTTT 58.712 45.455 0.00 0.00 0.00 2.66
192 193 3.315470 GGAACCCTCAGAACACAACTTTC 59.685 47.826 0.00 0.00 0.00 2.62
193 194 3.933861 ACCCTCAGAACACAACTTTCT 57.066 42.857 0.00 0.00 33.38 2.52
194 195 3.809905 ACCCTCAGAACACAACTTTCTC 58.190 45.455 0.00 0.00 30.56 2.87
195 196 3.199946 ACCCTCAGAACACAACTTTCTCA 59.800 43.478 0.00 0.00 30.56 3.27
196 197 3.812053 CCCTCAGAACACAACTTTCTCAG 59.188 47.826 0.00 0.00 30.56 3.35
197 198 3.249559 CCTCAGAACACAACTTTCTCAGC 59.750 47.826 0.00 0.00 30.56 4.26
198 199 3.872696 TCAGAACACAACTTTCTCAGCA 58.127 40.909 0.00 0.00 30.56 4.41
199 200 4.260985 TCAGAACACAACTTTCTCAGCAA 58.739 39.130 0.00 0.00 30.56 3.91
200 201 4.094887 TCAGAACACAACTTTCTCAGCAAC 59.905 41.667 0.00 0.00 30.56 4.17
201 202 4.095483 CAGAACACAACTTTCTCAGCAACT 59.905 41.667 0.00 0.00 30.56 3.16
202 203 4.095483 AGAACACAACTTTCTCAGCAACTG 59.905 41.667 0.00 0.00 0.00 3.16
203 204 2.098117 ACACAACTTTCTCAGCAACTGC 59.902 45.455 0.00 0.00 42.49 4.40
213 214 3.159984 GCAACTGCTCGACCGAAG 58.840 61.111 0.00 0.00 38.21 3.79
231 232 2.669569 GCTGCACGCCCTCAAAGA 60.670 61.111 0.00 0.00 0.00 2.52
232 233 2.970974 GCTGCACGCCCTCAAAGAC 61.971 63.158 0.00 0.00 0.00 3.01
233 234 1.597854 CTGCACGCCCTCAAAGACA 60.598 57.895 0.00 0.00 0.00 3.41
234 235 1.153066 TGCACGCCCTCAAAGACAA 60.153 52.632 0.00 0.00 0.00 3.18
235 236 0.537143 TGCACGCCCTCAAAGACAAT 60.537 50.000 0.00 0.00 0.00 2.71
236 237 0.109597 GCACGCCCTCAAAGACAATG 60.110 55.000 0.00 0.00 0.00 2.82
237 238 0.523072 CACGCCCTCAAAGACAATGG 59.477 55.000 0.00 0.00 0.00 3.16
238 239 1.244019 ACGCCCTCAAAGACAATGGC 61.244 55.000 0.00 0.00 35.55 4.40
239 240 1.243342 CGCCCTCAAAGACAATGGCA 61.243 55.000 0.00 0.00 38.81 4.92
240 241 1.188863 GCCCTCAAAGACAATGGCAT 58.811 50.000 0.00 0.00 38.73 4.40
241 242 1.551883 GCCCTCAAAGACAATGGCATT 59.448 47.619 6.96 6.96 38.73 3.56
242 243 2.027837 GCCCTCAAAGACAATGGCATTT 60.028 45.455 10.65 2.25 38.73 2.32
243 244 3.853475 CCCTCAAAGACAATGGCATTTC 58.147 45.455 10.65 11.41 0.00 2.17
244 245 3.512724 CCCTCAAAGACAATGGCATTTCT 59.487 43.478 10.65 13.38 0.00 2.52
245 246 4.706476 CCCTCAAAGACAATGGCATTTCTA 59.294 41.667 10.65 2.47 0.00 2.10
246 247 5.361857 CCCTCAAAGACAATGGCATTTCTAT 59.638 40.000 10.65 0.00 0.00 1.98
247 248 6.270815 CCTCAAAGACAATGGCATTTCTATG 58.729 40.000 10.65 1.92 34.76 2.23
261 262 5.644644 CATTTCTATGCTTTCACAACTCCC 58.355 41.667 0.00 0.00 0.00 4.30
262 263 4.365514 TTCTATGCTTTCACAACTCCCA 57.634 40.909 0.00 0.00 0.00 4.37
263 264 3.674997 TCTATGCTTTCACAACTCCCAC 58.325 45.455 0.00 0.00 0.00 4.61
264 265 1.620822 ATGCTTTCACAACTCCCACC 58.379 50.000 0.00 0.00 0.00 4.61
265 266 0.257328 TGCTTTCACAACTCCCACCA 59.743 50.000 0.00 0.00 0.00 4.17
266 267 1.341482 TGCTTTCACAACTCCCACCAA 60.341 47.619 0.00 0.00 0.00 3.67
267 268 1.338020 GCTTTCACAACTCCCACCAAG 59.662 52.381 0.00 0.00 0.00 3.61
268 269 2.654863 CTTTCACAACTCCCACCAAGT 58.345 47.619 0.00 0.00 0.00 3.16
293 294 6.767902 TCAACTTGTTATCTTTCTCTGTTGCT 59.232 34.615 0.00 0.00 34.23 3.91
298 299 7.615582 TGTTATCTTTCTCTGTTGCTAATGG 57.384 36.000 0.00 0.00 0.00 3.16
358 359 9.734620 GTGTATATCACAATGCAACAAATACAT 57.265 29.630 0.00 0.00 45.51 2.29
490 515 9.770097 ATGACTTAATTATGTCACCACTAGATG 57.230 33.333 27.28 0.00 44.52 2.90
494 519 9.383519 CTTAATTATGTCACCACTAGATGTGTT 57.616 33.333 13.46 5.26 44.81 3.32
495 520 7.615582 AATTATGTCACCACTAGATGTGTTG 57.384 36.000 13.46 0.00 44.81 3.33
504 529 6.146184 CACCACTAGATGTGTTGTAGACAAAG 59.854 42.308 0.00 0.00 44.81 2.77
514 539 8.453238 TGTGTTGTAGACAAAGCCTTAAAATA 57.547 30.769 0.00 0.00 40.65 1.40
515 540 8.347035 TGTGTTGTAGACAAAGCCTTAAAATAC 58.653 33.333 0.00 0.00 40.65 1.89
575 600 5.010282 ACTCAACGAATTTAAAGGGCATCT 58.990 37.500 0.00 0.00 0.00 2.90
576 601 5.476945 ACTCAACGAATTTAAAGGGCATCTT 59.523 36.000 0.00 0.00 37.28 2.40
578 603 4.718940 ACGAATTTAAAGGGCATCTTGG 57.281 40.909 0.00 0.00 35.55 3.61
579 604 3.447229 ACGAATTTAAAGGGCATCTTGGG 59.553 43.478 0.00 0.00 35.55 4.12
580 605 3.699038 CGAATTTAAAGGGCATCTTGGGA 59.301 43.478 0.00 0.00 35.55 4.37
581 606 4.440112 CGAATTTAAAGGGCATCTTGGGAC 60.440 45.833 0.00 0.00 35.55 4.46
582 607 3.825908 TTTAAAGGGCATCTTGGGACT 57.174 42.857 0.00 0.00 35.55 3.85
583 608 3.366052 TTAAAGGGCATCTTGGGACTC 57.634 47.619 0.00 0.00 35.55 3.36
584 609 0.332972 AAAGGGCATCTTGGGACTCC 59.667 55.000 0.00 0.00 35.55 3.85
585 610 1.575447 AAGGGCATCTTGGGACTCCC 61.575 60.000 7.25 7.25 45.71 4.30
586 611 2.003548 GGGCATCTTGGGACTCCCT 61.004 63.158 15.64 0.00 45.70 4.20
587 612 1.575447 GGGCATCTTGGGACTCCCTT 61.575 60.000 15.64 0.00 45.70 3.95
588 613 0.394899 GGCATCTTGGGACTCCCTTG 60.395 60.000 15.64 7.96 45.70 3.61
589 614 1.034292 GCATCTTGGGACTCCCTTGC 61.034 60.000 15.64 14.02 45.70 4.01
590 615 0.329261 CATCTTGGGACTCCCTTGCA 59.671 55.000 15.64 0.00 45.70 4.08
619 644 5.642491 GGTAGCTCTTGGTTAGTTTTACTGG 59.358 44.000 0.00 0.00 0.00 4.00
649 674 3.430929 GGACCTACGTAACTACTCTCCGA 60.431 52.174 0.00 0.00 0.00 4.55
689 714 5.058490 ACTTGCAATCCTTCAAACATTTGG 58.942 37.500 0.00 0.00 38.66 3.28
709 734 2.355412 GGTACGTATGCCCTGGTTTTCT 60.355 50.000 0.00 0.00 0.00 2.52
728 753 2.881513 TCTAGACCATCAGACTCGATGC 59.118 50.000 8.54 0.00 41.27 3.91
729 754 1.774110 AGACCATCAGACTCGATGCT 58.226 50.000 8.54 0.00 41.27 3.79
730 755 1.680735 AGACCATCAGACTCGATGCTC 59.319 52.381 8.54 6.02 41.27 4.26
731 756 0.749649 ACCATCAGACTCGATGCTCC 59.250 55.000 8.54 0.00 41.27 4.70
732 757 1.039068 CCATCAGACTCGATGCTCCT 58.961 55.000 8.54 0.00 41.27 3.69
733 758 1.000385 CCATCAGACTCGATGCTCCTC 60.000 57.143 8.54 0.00 41.27 3.71
759 784 5.306419 CCTCTCCTCTCCATACAAATGATCA 59.694 44.000 0.00 0.00 34.84 2.92
760 785 6.183361 CCTCTCCTCTCCATACAAATGATCAA 60.183 42.308 0.00 0.00 34.84 2.57
761 786 6.824553 TCTCCTCTCCATACAAATGATCAAG 58.175 40.000 0.00 0.00 34.84 3.02
762 787 5.933617 TCCTCTCCATACAAATGATCAAGG 58.066 41.667 0.00 0.00 34.84 3.61
763 788 4.518211 CCTCTCCATACAAATGATCAAGGC 59.482 45.833 0.00 0.00 34.84 4.35
764 789 5.114764 TCTCCATACAAATGATCAAGGCA 57.885 39.130 0.00 0.00 34.84 4.75
765 790 5.128205 TCTCCATACAAATGATCAAGGCAG 58.872 41.667 0.00 0.00 34.84 4.85
766 791 5.104402 TCTCCATACAAATGATCAAGGCAGA 60.104 40.000 0.00 0.00 34.84 4.26
767 792 5.128205 TCCATACAAATGATCAAGGCAGAG 58.872 41.667 0.00 0.00 34.84 3.35
768 793 4.261489 CCATACAAATGATCAAGGCAGAGC 60.261 45.833 0.00 0.00 34.84 4.09
769 794 2.799017 ACAAATGATCAAGGCAGAGCA 58.201 42.857 0.00 0.54 38.41 4.26
770 795 2.753452 ACAAATGATCAAGGCAGAGCAG 59.247 45.455 0.00 0.00 37.35 4.24
771 796 2.753452 CAAATGATCAAGGCAGAGCAGT 59.247 45.455 0.00 0.00 37.35 4.40
772 797 2.328819 ATGATCAAGGCAGAGCAGTC 57.671 50.000 0.00 0.00 37.35 3.51
773 798 0.978907 TGATCAAGGCAGAGCAGTCA 59.021 50.000 0.00 0.00 29.40 3.41
774 799 1.066358 TGATCAAGGCAGAGCAGTCAG 60.066 52.381 0.00 0.00 29.40 3.51
775 800 0.982704 ATCAAGGCAGAGCAGTCAGT 59.017 50.000 0.00 0.00 0.00 3.41
776 801 1.632589 TCAAGGCAGAGCAGTCAGTA 58.367 50.000 0.00 0.00 0.00 2.74
777 802 1.273606 TCAAGGCAGAGCAGTCAGTAC 59.726 52.381 0.00 0.00 0.00 2.73
778 803 0.610687 AAGGCAGAGCAGTCAGTACC 59.389 55.000 0.00 0.00 0.00 3.34
779 804 1.219393 GGCAGAGCAGTCAGTACCC 59.781 63.158 0.00 0.00 0.00 3.69
780 805 1.153745 GCAGAGCAGTCAGTACCCG 60.154 63.158 0.00 0.00 0.00 5.28
781 806 1.878656 GCAGAGCAGTCAGTACCCGT 61.879 60.000 0.00 0.00 0.00 5.28
782 807 1.460504 CAGAGCAGTCAGTACCCGTA 58.539 55.000 0.00 0.00 0.00 4.02
783 808 1.402259 CAGAGCAGTCAGTACCCGTAG 59.598 57.143 0.00 0.00 0.00 3.51
784 809 1.281287 AGAGCAGTCAGTACCCGTAGA 59.719 52.381 0.00 0.00 0.00 2.59
785 810 2.089980 GAGCAGTCAGTACCCGTAGAA 58.910 52.381 0.00 0.00 0.00 2.10
786 811 2.490903 GAGCAGTCAGTACCCGTAGAAA 59.509 50.000 0.00 0.00 0.00 2.52
787 812 2.895404 AGCAGTCAGTACCCGTAGAAAA 59.105 45.455 0.00 0.00 0.00 2.29
788 813 3.056749 AGCAGTCAGTACCCGTAGAAAAG 60.057 47.826 0.00 0.00 0.00 2.27
789 814 3.057033 GCAGTCAGTACCCGTAGAAAAGA 60.057 47.826 0.00 0.00 0.00 2.52
790 815 4.560108 GCAGTCAGTACCCGTAGAAAAGAA 60.560 45.833 0.00 0.00 0.00 2.52
851 876 8.617290 TCAAACTCTGTTTATTTTCTACTCCC 57.383 34.615 0.00 0.00 0.00 4.30
852 877 8.437575 TCAAACTCTGTTTATTTTCTACTCCCT 58.562 33.333 0.00 0.00 0.00 4.20
853 878 8.722394 CAAACTCTGTTTATTTTCTACTCCCTC 58.278 37.037 0.00 0.00 0.00 4.30
854 879 6.948589 ACTCTGTTTATTTTCTACTCCCTCC 58.051 40.000 0.00 0.00 0.00 4.30
855 880 5.974108 TCTGTTTATTTTCTACTCCCTCCG 58.026 41.667 0.00 0.00 0.00 4.63
856 881 5.482878 TCTGTTTATTTTCTACTCCCTCCGT 59.517 40.000 0.00 0.00 0.00 4.69
857 882 6.013984 TCTGTTTATTTTCTACTCCCTCCGTT 60.014 38.462 0.00 0.00 0.00 4.44
858 883 6.168389 TGTTTATTTTCTACTCCCTCCGTTC 58.832 40.000 0.00 0.00 0.00 3.95
859 884 3.908643 ATTTTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
860 885 2.314071 TTTCTACTCCCTCCGTTCCA 57.686 50.000 0.00 0.00 0.00 3.53
861 886 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
862 887 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
863 888 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
864 889 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
865 890 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
866 891 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
867 892 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
868 893 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
869 894 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
870 895 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
871 896 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
872 897 2.928116 CTCCGTTCCAAATTACTCGTCC 59.072 50.000 0.00 0.00 0.00 4.79
873 898 2.299582 TCCGTTCCAAATTACTCGTCCA 59.700 45.455 0.00 0.00 0.00 4.02
874 899 2.671396 CCGTTCCAAATTACTCGTCCAG 59.329 50.000 0.00 0.00 0.00 3.86
875 900 3.323243 CGTTCCAAATTACTCGTCCAGT 58.677 45.455 0.00 0.00 39.41 4.00
876 901 4.487948 CGTTCCAAATTACTCGTCCAGTA 58.512 43.478 0.00 0.00 36.43 2.74
890 915 3.343941 TCCAGTAATTTGGAACGGAGG 57.656 47.619 0.00 0.00 44.09 4.30
891 916 2.026636 TCCAGTAATTTGGAACGGAGGG 60.027 50.000 0.00 0.00 44.09 4.30
892 917 2.026636 CCAGTAATTTGGAACGGAGGGA 60.027 50.000 0.00 0.00 40.87 4.20
893 918 3.270877 CAGTAATTTGGAACGGAGGGAG 58.729 50.000 0.00 0.00 0.00 4.30
894 919 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
895 920 4.081309 CAGTAATTTGGAACGGAGGGAGTA 60.081 45.833 0.00 0.00 0.00 2.59
896 921 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
899 924 2.019807 TGGAACGGAGGGAGTAGTTT 57.980 50.000 0.00 0.00 0.00 2.66
920 945 0.733150 GGATGCTTAAGGCGGTTGAC 59.267 55.000 4.29 0.00 45.43 3.18
950 979 2.227388 GCCTAGCCATGCATGTTCATAC 59.773 50.000 24.58 7.03 0.00 2.39
1234 1264 1.834263 GACCACCTGGACAGCTATCTT 59.166 52.381 0.00 0.00 38.94 2.40
1246 1276 0.250081 GCTATCTTAGGCGCCTTGCT 60.250 55.000 37.74 21.07 45.43 3.91
1362 1392 0.395312 CCGTTGGGCTCCGGTAATAT 59.605 55.000 0.00 0.00 39.38 1.28
1503 1539 2.507324 GCGCCACGAAGAGGAGAC 60.507 66.667 0.00 0.00 42.26 3.36
1516 1552 4.405116 AGAGGAGACGTACGATCTTAGT 57.595 45.455 24.41 9.19 0.00 2.24
1523 1559 3.070018 ACGTACGATCTTAGTATCCCCG 58.930 50.000 24.41 0.00 0.00 5.73
2000 2247 2.806745 GCTGCTCAAGTTGGTACAGACA 60.807 50.000 18.76 5.90 42.39 3.41
2127 2374 3.433274 TGCTACGAAATTGCTCTGTGAAG 59.567 43.478 0.00 0.00 0.00 3.02
2128 2375 2.977405 ACGAAATTGCTCTGTGAAGC 57.023 45.000 0.00 0.00 42.82 3.86
2244 2491 1.303074 AGACGACGGACCTGCTGTA 60.303 57.895 0.00 0.00 35.85 2.74
2601 2860 2.043248 TCCTCTGGTACGGCCTCC 60.043 66.667 0.00 0.85 38.35 4.30
2620 2879 2.352805 CACAGCCTTGTCTCCCCC 59.647 66.667 0.00 0.00 34.62 5.40
2643 2902 1.279846 TCCCTGGTATTTCAACCCGAC 59.720 52.381 0.00 0.00 38.90 4.79
2663 2922 1.453155 CACAGCCTAACCATGGTCAC 58.547 55.000 20.07 8.06 0.00 3.67
2673 2932 3.575247 ATGGTCACCCCCGCAACA 61.575 61.111 0.00 0.00 0.00 3.33
2739 3003 2.628696 CCACAATGCCAAGCGCTCA 61.629 57.895 12.06 4.70 38.78 4.26
2812 3076 3.347216 CCAAGGGTCTTCACTAACATGG 58.653 50.000 0.00 0.00 0.00 3.66
2896 3160 1.889105 GACGCCATCCACGATGCAT 60.889 57.895 0.00 0.00 38.59 3.96
3036 3300 3.106407 GGTGCTGCTGACGTCGAC 61.106 66.667 11.62 5.18 0.00 4.20
3389 3653 8.319057 ACTAATCAGTATCAACCCTCATTGTA 57.681 34.615 0.00 0.00 31.45 2.41
3453 3717 0.843309 TTCAACTCCTTCCTGCCACA 59.157 50.000 0.00 0.00 0.00 4.17
3482 3746 5.347124 TGGACCAAAGAATCTTCCTACCTA 58.653 41.667 0.00 0.00 0.00 3.08
3511 3775 1.823899 GGCCGGCGGAATGATTTCT 60.824 57.895 33.44 0.00 32.16 2.52
3568 3832 1.065551 TCTCATCATCAGTACGCCACG 59.934 52.381 0.00 0.00 0.00 4.94
3730 3995 6.636454 TTGTAGGAGATTTCAACCTGGTAT 57.364 37.500 0.00 0.00 35.52 2.73
4118 4387 1.584724 CCCCAACCACTATCCTCTGT 58.415 55.000 0.00 0.00 0.00 3.41
4358 4628 1.890489 GGAAACAACGGGGCAAAGTAT 59.110 47.619 0.00 0.00 0.00 2.12
4458 4728 0.563173 TCCCTACTAGCTGATGGGCT 59.437 55.000 0.00 0.00 45.29 5.19
4507 4777 7.865706 AGCGACCATACTAAAAGATCATTTT 57.134 32.000 0.62 4.96 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.200120 GCATTCTTGGCCTTTCTTCTTTAATAT 58.800 33.333 3.32 0.00 0.00 1.28
28 29 7.547227 GCATTCTTGGCCTTTCTTCTTTAATA 58.453 34.615 3.32 0.00 0.00 0.98
29 30 6.401394 GCATTCTTGGCCTTTCTTCTTTAAT 58.599 36.000 3.32 0.00 0.00 1.40
30 31 5.783111 GCATTCTTGGCCTTTCTTCTTTAA 58.217 37.500 3.32 0.00 0.00 1.52
31 32 5.391312 GCATTCTTGGCCTTTCTTCTTTA 57.609 39.130 3.32 0.00 0.00 1.85
32 33 4.263018 GCATTCTTGGCCTTTCTTCTTT 57.737 40.909 3.32 0.00 0.00 2.52
33 34 3.949842 GCATTCTTGGCCTTTCTTCTT 57.050 42.857 3.32 0.00 0.00 2.52
44 45 4.096190 ACTATGATGGAGGCATTCTTGG 57.904 45.455 0.00 0.00 0.00 3.61
45 46 5.735354 GCAAACTATGATGGAGGCATTCTTG 60.735 44.000 0.00 0.00 0.00 3.02
46 47 4.340381 GCAAACTATGATGGAGGCATTCTT 59.660 41.667 0.00 0.00 0.00 2.52
47 48 3.887716 GCAAACTATGATGGAGGCATTCT 59.112 43.478 0.00 0.00 0.00 2.40
48 49 3.633525 TGCAAACTATGATGGAGGCATTC 59.366 43.478 0.00 0.00 0.00 2.67
49 50 3.634504 TGCAAACTATGATGGAGGCATT 58.365 40.909 0.00 0.00 0.00 3.56
50 51 3.220110 CTGCAAACTATGATGGAGGCAT 58.780 45.455 0.00 0.00 32.06 4.40
51 52 2.646930 CTGCAAACTATGATGGAGGCA 58.353 47.619 0.00 0.00 32.06 4.75
52 53 1.952296 CCTGCAAACTATGATGGAGGC 59.048 52.381 0.31 0.00 46.14 4.70
54 55 1.952296 GCCCTGCAAACTATGATGGAG 59.048 52.381 0.00 0.00 35.08 3.86
55 56 1.565759 AGCCCTGCAAACTATGATGGA 59.434 47.619 0.00 0.00 0.00 3.41
56 57 1.679680 CAGCCCTGCAAACTATGATGG 59.320 52.381 0.00 0.00 0.00 3.51
57 58 2.372264 ACAGCCCTGCAAACTATGATG 58.628 47.619 0.00 0.00 0.00 3.07
58 59 2.814805 ACAGCCCTGCAAACTATGAT 57.185 45.000 0.00 0.00 0.00 2.45
59 60 2.584835 AACAGCCCTGCAAACTATGA 57.415 45.000 0.00 0.00 0.00 2.15
60 61 3.665745 AAAACAGCCCTGCAAACTATG 57.334 42.857 0.00 0.00 0.00 2.23
61 62 4.148838 TGTAAAACAGCCCTGCAAACTAT 58.851 39.130 0.00 0.00 0.00 2.12
62 63 3.556999 TGTAAAACAGCCCTGCAAACTA 58.443 40.909 0.00 0.00 0.00 2.24
63 64 2.383855 TGTAAAACAGCCCTGCAAACT 58.616 42.857 0.00 0.00 0.00 2.66
64 65 2.880963 TGTAAAACAGCCCTGCAAAC 57.119 45.000 0.00 0.00 0.00 2.93
65 66 2.547642 GCATGTAAAACAGCCCTGCAAA 60.548 45.455 0.00 0.00 32.38 3.68
66 67 1.000731 GCATGTAAAACAGCCCTGCAA 59.999 47.619 0.00 0.00 32.38 4.08
67 68 0.602562 GCATGTAAAACAGCCCTGCA 59.397 50.000 0.00 0.00 32.38 4.41
68 69 0.890683 AGCATGTAAAACAGCCCTGC 59.109 50.000 0.00 0.00 32.28 4.85
69 70 4.202050 GGATTAGCATGTAAAACAGCCCTG 60.202 45.833 0.00 0.00 0.00 4.45
70 71 3.954258 GGATTAGCATGTAAAACAGCCCT 59.046 43.478 0.00 0.00 0.00 5.19
71 72 3.954258 AGGATTAGCATGTAAAACAGCCC 59.046 43.478 0.00 0.00 0.00 5.19
72 73 4.640201 TGAGGATTAGCATGTAAAACAGCC 59.360 41.667 0.00 0.00 0.00 4.85
73 74 5.818136 TGAGGATTAGCATGTAAAACAGC 57.182 39.130 0.00 0.00 0.00 4.40
74 75 7.558161 TGATGAGGATTAGCATGTAAAACAG 57.442 36.000 0.00 0.00 0.00 3.16
75 76 8.523915 AATGATGAGGATTAGCATGTAAAACA 57.476 30.769 0.00 0.00 0.00 2.83
76 77 8.623903 TGAATGATGAGGATTAGCATGTAAAAC 58.376 33.333 0.00 0.00 0.00 2.43
77 78 8.623903 GTGAATGATGAGGATTAGCATGTAAAA 58.376 33.333 0.00 0.00 0.00 1.52
78 79 7.229306 GGTGAATGATGAGGATTAGCATGTAAA 59.771 37.037 0.00 0.00 0.00 2.01
79 80 6.712095 GGTGAATGATGAGGATTAGCATGTAA 59.288 38.462 0.00 0.00 0.00 2.41
80 81 6.233434 GGTGAATGATGAGGATTAGCATGTA 58.767 40.000 0.00 0.00 0.00 2.29
81 82 5.068636 GGTGAATGATGAGGATTAGCATGT 58.931 41.667 0.00 0.00 0.00 3.21
82 83 4.153655 CGGTGAATGATGAGGATTAGCATG 59.846 45.833 0.00 0.00 0.00 4.06
83 84 4.040829 TCGGTGAATGATGAGGATTAGCAT 59.959 41.667 0.00 0.00 0.00 3.79
84 85 3.387699 TCGGTGAATGATGAGGATTAGCA 59.612 43.478 0.00 0.00 0.00 3.49
85 86 3.743396 GTCGGTGAATGATGAGGATTAGC 59.257 47.826 0.00 0.00 0.00 3.09
86 87 4.039730 AGGTCGGTGAATGATGAGGATTAG 59.960 45.833 0.00 0.00 0.00 1.73
87 88 3.967326 AGGTCGGTGAATGATGAGGATTA 59.033 43.478 0.00 0.00 0.00 1.75
88 89 2.774234 AGGTCGGTGAATGATGAGGATT 59.226 45.455 0.00 0.00 0.00 3.01
89 90 2.366916 GAGGTCGGTGAATGATGAGGAT 59.633 50.000 0.00 0.00 0.00 3.24
90 91 1.757118 GAGGTCGGTGAATGATGAGGA 59.243 52.381 0.00 0.00 0.00 3.71
91 92 1.759445 AGAGGTCGGTGAATGATGAGG 59.241 52.381 0.00 0.00 0.00 3.86
92 93 2.692557 AGAGAGGTCGGTGAATGATGAG 59.307 50.000 0.00 0.00 0.00 2.90
93 94 2.739943 AGAGAGGTCGGTGAATGATGA 58.260 47.619 0.00 0.00 0.00 2.92
94 95 3.243569 GGTAGAGAGGTCGGTGAATGATG 60.244 52.174 0.00 0.00 0.00 3.07
95 96 2.959707 GGTAGAGAGGTCGGTGAATGAT 59.040 50.000 0.00 0.00 0.00 2.45
96 97 2.376109 GGTAGAGAGGTCGGTGAATGA 58.624 52.381 0.00 0.00 0.00 2.57
97 98 1.409427 GGGTAGAGAGGTCGGTGAATG 59.591 57.143 0.00 0.00 0.00 2.67
98 99 1.288335 AGGGTAGAGAGGTCGGTGAAT 59.712 52.381 0.00 0.00 0.00 2.57
99 100 0.702902 AGGGTAGAGAGGTCGGTGAA 59.297 55.000 0.00 0.00 0.00 3.18
100 101 1.489649 CTAGGGTAGAGAGGTCGGTGA 59.510 57.143 0.00 0.00 0.00 4.02
101 102 1.970092 CTAGGGTAGAGAGGTCGGTG 58.030 60.000 0.00 0.00 0.00 4.94
102 103 0.183252 GCTAGGGTAGAGAGGTCGGT 59.817 60.000 0.00 0.00 0.00 4.69
103 104 0.183014 TGCTAGGGTAGAGAGGTCGG 59.817 60.000 0.00 0.00 0.00 4.79
104 105 2.054232 TTGCTAGGGTAGAGAGGTCG 57.946 55.000 0.00 0.00 0.00 4.79
105 106 3.633418 TCTTTGCTAGGGTAGAGAGGTC 58.367 50.000 0.00 0.00 0.00 3.85
106 107 3.759815 TCTTTGCTAGGGTAGAGAGGT 57.240 47.619 0.00 0.00 0.00 3.85
107 108 4.141824 CCTTTCTTTGCTAGGGTAGAGAGG 60.142 50.000 0.00 0.00 34.09 3.69
108 109 4.682050 GCCTTTCTTTGCTAGGGTAGAGAG 60.682 50.000 0.00 0.00 0.00 3.20
109 110 3.197983 GCCTTTCTTTGCTAGGGTAGAGA 59.802 47.826 0.00 0.00 0.00 3.10
110 111 3.055094 TGCCTTTCTTTGCTAGGGTAGAG 60.055 47.826 0.00 0.00 0.00 2.43
111 112 2.910319 TGCCTTTCTTTGCTAGGGTAGA 59.090 45.455 0.00 0.00 0.00 2.59
112 113 3.350219 TGCCTTTCTTTGCTAGGGTAG 57.650 47.619 0.00 0.00 0.00 3.18
113 114 4.316025 AATGCCTTTCTTTGCTAGGGTA 57.684 40.909 0.00 0.00 0.00 3.69
114 115 2.907458 ATGCCTTTCTTTGCTAGGGT 57.093 45.000 0.00 0.00 0.00 4.34
115 116 4.016444 TGTAATGCCTTTCTTTGCTAGGG 58.984 43.478 0.00 0.00 0.00 3.53
116 117 5.841957 ATGTAATGCCTTTCTTTGCTAGG 57.158 39.130 0.00 0.00 0.00 3.02
117 118 6.753744 GGAAATGTAATGCCTTTCTTTGCTAG 59.246 38.462 0.24 0.00 33.86 3.42
118 119 6.437162 AGGAAATGTAATGCCTTTCTTTGCTA 59.563 34.615 0.24 0.00 33.86 3.49
119 120 5.246883 AGGAAATGTAATGCCTTTCTTTGCT 59.753 36.000 0.24 0.00 33.86 3.91
120 121 5.482006 AGGAAATGTAATGCCTTTCTTTGC 58.518 37.500 0.24 0.00 33.86 3.68
121 122 7.967890 AAAGGAAATGTAATGCCTTTCTTTG 57.032 32.000 0.00 0.00 43.99 2.77
127 128 8.040727 GGTTATTGAAAGGAAATGTAATGCCTT 58.959 33.333 0.00 0.00 41.86 4.35
128 129 7.364673 GGGTTATTGAAAGGAAATGTAATGCCT 60.365 37.037 0.00 0.00 33.82 4.75
129 130 6.761242 GGGTTATTGAAAGGAAATGTAATGCC 59.239 38.462 0.00 0.00 0.00 4.40
130 131 7.327214 TGGGTTATTGAAAGGAAATGTAATGC 58.673 34.615 0.00 0.00 0.00 3.56
131 132 9.150348 GTTGGGTTATTGAAAGGAAATGTAATG 57.850 33.333 0.00 0.00 0.00 1.90
132 133 8.032451 CGTTGGGTTATTGAAAGGAAATGTAAT 58.968 33.333 0.00 0.00 0.00 1.89
133 134 7.371936 CGTTGGGTTATTGAAAGGAAATGTAA 58.628 34.615 0.00 0.00 0.00 2.41
134 135 6.071840 CCGTTGGGTTATTGAAAGGAAATGTA 60.072 38.462 0.00 0.00 0.00 2.29
135 136 5.279256 CCGTTGGGTTATTGAAAGGAAATGT 60.279 40.000 0.00 0.00 0.00 2.71
136 137 5.047660 TCCGTTGGGTTATTGAAAGGAAATG 60.048 40.000 0.00 0.00 33.83 2.32
137 138 5.081032 TCCGTTGGGTTATTGAAAGGAAAT 58.919 37.500 0.00 0.00 33.83 2.17
138 139 4.471548 TCCGTTGGGTTATTGAAAGGAAA 58.528 39.130 0.00 0.00 33.83 3.13
139 140 4.076394 CTCCGTTGGGTTATTGAAAGGAA 58.924 43.478 0.00 0.00 28.62 3.36
140 141 3.560453 CCTCCGTTGGGTTATTGAAAGGA 60.560 47.826 0.00 0.00 33.83 3.36
141 142 2.752903 CCTCCGTTGGGTTATTGAAAGG 59.247 50.000 0.00 0.00 33.83 3.11
142 143 3.439129 GTCCTCCGTTGGGTTATTGAAAG 59.561 47.826 0.00 0.00 33.83 2.62
143 144 3.414269 GTCCTCCGTTGGGTTATTGAAA 58.586 45.455 0.00 0.00 33.83 2.69
144 145 2.290450 GGTCCTCCGTTGGGTTATTGAA 60.290 50.000 0.00 0.00 33.83 2.69
145 146 1.279846 GGTCCTCCGTTGGGTTATTGA 59.720 52.381 0.00 0.00 33.83 2.57
146 147 1.003812 TGGTCCTCCGTTGGGTTATTG 59.996 52.381 0.00 0.00 36.30 1.90
147 148 1.364269 TGGTCCTCCGTTGGGTTATT 58.636 50.000 0.00 0.00 36.30 1.40
148 149 1.280998 CTTGGTCCTCCGTTGGGTTAT 59.719 52.381 0.00 0.00 36.30 1.89
149 150 0.688487 CTTGGTCCTCCGTTGGGTTA 59.312 55.000 0.00 0.00 36.30 2.85
150 151 1.350310 ACTTGGTCCTCCGTTGGGTT 61.350 55.000 0.00 0.00 36.30 4.11
151 152 1.768888 ACTTGGTCCTCCGTTGGGT 60.769 57.895 0.00 0.00 36.30 4.51
152 153 1.302511 CACTTGGTCCTCCGTTGGG 60.303 63.158 0.00 0.00 36.30 4.12
153 154 1.302511 CCACTTGGTCCTCCGTTGG 60.303 63.158 0.00 0.00 36.30 3.77
154 155 0.107831 TTCCACTTGGTCCTCCGTTG 59.892 55.000 0.00 0.00 36.30 4.10
155 156 0.108019 GTTCCACTTGGTCCTCCGTT 59.892 55.000 0.00 0.00 36.30 4.44
156 157 1.752833 GTTCCACTTGGTCCTCCGT 59.247 57.895 0.00 0.00 36.30 4.69
157 158 1.003718 GGTTCCACTTGGTCCTCCG 60.004 63.158 0.00 0.00 36.30 4.63
158 159 1.134438 AGGGTTCCACTTGGTCCTCC 61.134 60.000 10.42 3.24 36.34 4.30
159 160 0.325272 GAGGGTTCCACTTGGTCCTC 59.675 60.000 14.54 14.54 39.05 3.71
160 161 0.401395 TGAGGGTTCCACTTGGTCCT 60.401 55.000 7.10 7.10 35.31 3.85
161 162 0.036875 CTGAGGGTTCCACTTGGTCC 59.963 60.000 0.00 0.00 36.34 4.46
162 163 1.056660 TCTGAGGGTTCCACTTGGTC 58.943 55.000 0.00 0.00 36.34 4.02
163 164 1.143073 GTTCTGAGGGTTCCACTTGGT 59.857 52.381 0.00 0.00 36.34 3.67
164 165 1.142870 TGTTCTGAGGGTTCCACTTGG 59.857 52.381 0.00 0.00 0.00 3.61
165 166 2.222027 GTGTTCTGAGGGTTCCACTTG 58.778 52.381 0.00 0.00 0.00 3.16
166 167 1.843851 TGTGTTCTGAGGGTTCCACTT 59.156 47.619 0.00 0.00 0.00 3.16
167 168 1.507140 TGTGTTCTGAGGGTTCCACT 58.493 50.000 0.00 0.00 0.00 4.00
168 169 1.947456 GTTGTGTTCTGAGGGTTCCAC 59.053 52.381 0.00 0.00 0.00 4.02
169 170 1.843851 AGTTGTGTTCTGAGGGTTCCA 59.156 47.619 0.00 0.00 0.00 3.53
170 171 2.640316 AGTTGTGTTCTGAGGGTTCC 57.360 50.000 0.00 0.00 0.00 3.62
171 172 4.200092 AGAAAGTTGTGTTCTGAGGGTTC 58.800 43.478 0.00 0.00 34.03 3.62
172 173 4.200092 GAGAAAGTTGTGTTCTGAGGGTT 58.800 43.478 0.00 0.00 35.46 4.11
173 174 3.199946 TGAGAAAGTTGTGTTCTGAGGGT 59.800 43.478 0.00 0.00 35.46 4.34
174 175 3.808728 TGAGAAAGTTGTGTTCTGAGGG 58.191 45.455 0.00 0.00 35.46 4.30
175 176 3.249559 GCTGAGAAAGTTGTGTTCTGAGG 59.750 47.826 3.42 0.00 36.98 3.86
176 177 3.873361 TGCTGAGAAAGTTGTGTTCTGAG 59.127 43.478 0.00 0.00 38.79 3.35
177 178 3.872696 TGCTGAGAAAGTTGTGTTCTGA 58.127 40.909 0.00 0.00 35.46 3.27
178 179 4.095483 AGTTGCTGAGAAAGTTGTGTTCTG 59.905 41.667 0.00 0.00 35.46 3.02
179 180 4.095483 CAGTTGCTGAGAAAGTTGTGTTCT 59.905 41.667 0.00 0.00 38.05 3.01
180 181 4.346129 CAGTTGCTGAGAAAGTTGTGTTC 58.654 43.478 0.00 0.00 32.44 3.18
181 182 3.428045 GCAGTTGCTGAGAAAGTTGTGTT 60.428 43.478 0.00 0.00 38.21 3.32
182 183 2.098117 GCAGTTGCTGAGAAAGTTGTGT 59.902 45.455 0.00 0.00 38.21 3.72
183 184 2.724349 GCAGTTGCTGAGAAAGTTGTG 58.276 47.619 0.00 0.00 38.21 3.33
196 197 2.383527 CCTTCGGTCGAGCAGTTGC 61.384 63.158 15.89 0.00 42.49 4.17
197 198 2.383527 GCCTTCGGTCGAGCAGTTG 61.384 63.158 15.89 1.22 0.00 3.16
198 199 2.048127 GCCTTCGGTCGAGCAGTT 60.048 61.111 15.89 0.00 0.00 3.16
199 200 2.992114 AGCCTTCGGTCGAGCAGT 60.992 61.111 15.89 0.00 0.00 4.40
200 201 2.507992 CAGCCTTCGGTCGAGCAG 60.508 66.667 15.89 5.19 0.00 4.24
201 202 4.742201 GCAGCCTTCGGTCGAGCA 62.742 66.667 15.89 0.00 0.00 4.26
202 203 4.742201 TGCAGCCTTCGGTCGAGC 62.742 66.667 4.06 4.06 0.00 5.03
203 204 2.811317 GTGCAGCCTTCGGTCGAG 60.811 66.667 0.00 0.00 0.00 4.04
204 205 4.717629 CGTGCAGCCTTCGGTCGA 62.718 66.667 0.00 0.00 0.00 4.20
215 216 1.165907 TTGTCTTTGAGGGCGTGCAG 61.166 55.000 0.00 0.00 0.00 4.41
216 217 0.537143 ATTGTCTTTGAGGGCGTGCA 60.537 50.000 0.00 0.00 0.00 4.57
217 218 0.109597 CATTGTCTTTGAGGGCGTGC 60.110 55.000 0.00 0.00 0.00 5.34
218 219 0.523072 CCATTGTCTTTGAGGGCGTG 59.477 55.000 0.00 0.00 0.00 5.34
219 220 1.244019 GCCATTGTCTTTGAGGGCGT 61.244 55.000 0.00 0.00 0.00 5.68
220 221 1.243342 TGCCATTGTCTTTGAGGGCG 61.243 55.000 0.00 0.00 44.21 6.13
221 222 1.188863 ATGCCATTGTCTTTGAGGGC 58.811 50.000 0.00 0.00 41.70 5.19
222 223 3.512724 AGAAATGCCATTGTCTTTGAGGG 59.487 43.478 0.00 0.00 0.00 4.30
223 224 4.796038 AGAAATGCCATTGTCTTTGAGG 57.204 40.909 0.00 0.00 0.00 3.86
238 239 5.183713 TGGGAGTTGTGAAAGCATAGAAATG 59.816 40.000 0.00 0.00 36.09 2.32
239 240 5.183904 GTGGGAGTTGTGAAAGCATAGAAAT 59.816 40.000 0.00 0.00 0.00 2.17
240 241 4.518970 GTGGGAGTTGTGAAAGCATAGAAA 59.481 41.667 0.00 0.00 0.00 2.52
241 242 4.072131 GTGGGAGTTGTGAAAGCATAGAA 58.928 43.478 0.00 0.00 0.00 2.10
242 243 3.559171 GGTGGGAGTTGTGAAAGCATAGA 60.559 47.826 0.00 0.00 0.00 1.98
243 244 2.749621 GGTGGGAGTTGTGAAAGCATAG 59.250 50.000 0.00 0.00 0.00 2.23
244 245 2.107378 TGGTGGGAGTTGTGAAAGCATA 59.893 45.455 0.00 0.00 0.00 3.14
245 246 1.133513 TGGTGGGAGTTGTGAAAGCAT 60.134 47.619 0.00 0.00 0.00 3.79
246 247 0.257328 TGGTGGGAGTTGTGAAAGCA 59.743 50.000 0.00 0.00 0.00 3.91
247 248 1.338020 CTTGGTGGGAGTTGTGAAAGC 59.662 52.381 0.00 0.00 0.00 3.51
248 249 2.618709 GACTTGGTGGGAGTTGTGAAAG 59.381 50.000 0.00 0.00 0.00 2.62
249 250 2.025793 TGACTTGGTGGGAGTTGTGAAA 60.026 45.455 0.00 0.00 0.00 2.69
250 251 1.562008 TGACTTGGTGGGAGTTGTGAA 59.438 47.619 0.00 0.00 0.00 3.18
251 252 1.208706 TGACTTGGTGGGAGTTGTGA 58.791 50.000 0.00 0.00 0.00 3.58
252 253 1.676006 GTTGACTTGGTGGGAGTTGTG 59.324 52.381 0.00 0.00 0.00 3.33
253 254 1.564348 AGTTGACTTGGTGGGAGTTGT 59.436 47.619 0.00 0.00 0.00 3.32
254 255 2.348411 AGTTGACTTGGTGGGAGTTG 57.652 50.000 0.00 0.00 0.00 3.16
265 266 8.616076 CAACAGAGAAAGATAACAAGTTGACTT 58.384 33.333 10.54 6.70 36.78 3.01
266 267 7.254932 GCAACAGAGAAAGATAACAAGTTGACT 60.255 37.037 10.54 0.00 36.78 3.41
267 268 6.853362 GCAACAGAGAAAGATAACAAGTTGAC 59.147 38.462 10.54 0.00 36.78 3.18
268 269 6.767902 AGCAACAGAGAAAGATAACAAGTTGA 59.232 34.615 10.54 0.00 36.78 3.18
275 276 6.823689 TCCCATTAGCAACAGAGAAAGATAAC 59.176 38.462 0.00 0.00 0.00 1.89
406 407 4.674281 TTTTGTGGGTTGGGTTGTTATC 57.326 40.909 0.00 0.00 0.00 1.75
408 409 3.775316 ACATTTTGTGGGTTGGGTTGTTA 59.225 39.130 0.00 0.00 0.00 2.41
466 491 9.035607 CACATCTAGTGGTGACATAATTAAGTC 57.964 37.037 12.79 12.79 46.14 3.01
486 511 4.357918 AGGCTTTGTCTACAACACATCT 57.642 40.909 0.00 0.00 37.70 2.90
490 515 8.347035 TGTATTTTAAGGCTTTGTCTACAACAC 58.653 33.333 4.45 0.00 37.70 3.32
494 519 9.290988 TCATTGTATTTTAAGGCTTTGTCTACA 57.709 29.630 4.45 6.69 0.00 2.74
504 529 9.860898 AAGTCAATCTTCATTGTATTTTAAGGC 57.139 29.630 0.00 0.00 40.47 4.35
536 561 7.846644 TCGTTGAGTTTTAAGTTTGTCCTAA 57.153 32.000 0.00 0.00 0.00 2.69
578 603 0.251341 ACCAACATGCAAGGGAGTCC 60.251 55.000 0.00 0.00 0.00 3.85
579 604 2.359900 CTACCAACATGCAAGGGAGTC 58.640 52.381 0.00 0.00 0.00 3.36
580 605 1.614317 GCTACCAACATGCAAGGGAGT 60.614 52.381 11.35 0.74 35.70 3.85
581 606 1.098050 GCTACCAACATGCAAGGGAG 58.902 55.000 6.55 6.55 36.40 4.30
582 607 0.698238 AGCTACCAACATGCAAGGGA 59.302 50.000 0.00 0.00 0.00 4.20
583 608 1.098050 GAGCTACCAACATGCAAGGG 58.902 55.000 0.00 0.00 0.00 3.95
584 609 2.119801 AGAGCTACCAACATGCAAGG 57.880 50.000 0.00 0.00 0.00 3.61
585 610 2.163010 CCAAGAGCTACCAACATGCAAG 59.837 50.000 0.00 0.00 0.00 4.01
586 611 2.161855 CCAAGAGCTACCAACATGCAA 58.838 47.619 0.00 0.00 0.00 4.08
587 612 1.073763 ACCAAGAGCTACCAACATGCA 59.926 47.619 0.00 0.00 0.00 3.96
588 613 1.826385 ACCAAGAGCTACCAACATGC 58.174 50.000 0.00 0.00 0.00 4.06
589 614 4.579869 ACTAACCAAGAGCTACCAACATG 58.420 43.478 0.00 0.00 0.00 3.21
590 615 4.910458 ACTAACCAAGAGCTACCAACAT 57.090 40.909 0.00 0.00 0.00 2.71
619 644 4.102035 AGTTACGTAGGTCCGATTGTTC 57.898 45.455 0.00 0.00 0.00 3.18
665 690 6.183360 ACCAAATGTTTGAAGGATTGCAAGTA 60.183 34.615 4.94 0.00 40.55 2.24
671 696 5.768317 ACGTACCAAATGTTTGAAGGATTG 58.232 37.500 7.04 0.00 40.55 2.67
689 714 2.981898 AGAAAACCAGGGCATACGTAC 58.018 47.619 0.00 0.00 0.00 3.67
728 753 1.221635 TGGAGAGGAGAGGAGAGGAG 58.778 60.000 0.00 0.00 0.00 3.69
729 754 1.919933 ATGGAGAGGAGAGGAGAGGA 58.080 55.000 0.00 0.00 0.00 3.71
730 755 2.445145 TGTATGGAGAGGAGAGGAGAGG 59.555 54.545 0.00 0.00 0.00 3.69
731 756 3.874383 TGTATGGAGAGGAGAGGAGAG 57.126 52.381 0.00 0.00 0.00 3.20
732 757 4.609866 TTTGTATGGAGAGGAGAGGAGA 57.390 45.455 0.00 0.00 0.00 3.71
733 758 4.898265 TCATTTGTATGGAGAGGAGAGGAG 59.102 45.833 0.00 0.00 32.40 3.69
759 784 0.610687 GGTACTGACTGCTCTGCCTT 59.389 55.000 0.00 0.00 0.00 4.35
760 785 1.261238 GGGTACTGACTGCTCTGCCT 61.261 60.000 0.00 0.00 0.00 4.75
761 786 1.219393 GGGTACTGACTGCTCTGCC 59.781 63.158 0.00 0.00 0.00 4.85
762 787 1.153745 CGGGTACTGACTGCTCTGC 60.154 63.158 0.00 0.00 36.31 4.26
763 788 1.402259 CTACGGGTACTGACTGCTCTG 59.598 57.143 0.00 0.00 38.67 3.35
764 789 1.281287 TCTACGGGTACTGACTGCTCT 59.719 52.381 0.00 0.00 38.67 4.09
765 790 1.747709 TCTACGGGTACTGACTGCTC 58.252 55.000 0.00 0.00 38.67 4.26
766 791 2.211250 TTCTACGGGTACTGACTGCT 57.789 50.000 0.00 0.00 38.67 4.24
767 792 3.057033 TCTTTTCTACGGGTACTGACTGC 60.057 47.826 0.00 0.00 38.67 4.40
768 793 4.778534 TCTTTTCTACGGGTACTGACTG 57.221 45.455 0.00 0.00 38.67 3.51
769 794 5.796424 TTTCTTTTCTACGGGTACTGACT 57.204 39.130 0.00 0.00 38.67 3.41
770 795 5.407691 CCTTTTCTTTTCTACGGGTACTGAC 59.592 44.000 0.00 0.00 38.67 3.51
771 796 5.544650 CCTTTTCTTTTCTACGGGTACTGA 58.455 41.667 0.00 0.00 38.67 3.41
772 797 4.153655 GCCTTTTCTTTTCTACGGGTACTG 59.846 45.833 0.00 0.00 42.99 2.74
773 798 4.202388 TGCCTTTTCTTTTCTACGGGTACT 60.202 41.667 0.00 0.00 0.00 2.73
774 799 4.067192 TGCCTTTTCTTTTCTACGGGTAC 58.933 43.478 0.00 0.00 0.00 3.34
775 800 4.040706 TCTGCCTTTTCTTTTCTACGGGTA 59.959 41.667 0.00 0.00 0.00 3.69
776 801 3.146847 CTGCCTTTTCTTTTCTACGGGT 58.853 45.455 0.00 0.00 0.00 5.28
777 802 3.408634 TCTGCCTTTTCTTTTCTACGGG 58.591 45.455 0.00 0.00 0.00 5.28
778 803 4.065789 ACTCTGCCTTTTCTTTTCTACGG 58.934 43.478 0.00 0.00 0.00 4.02
779 804 5.927115 ACTACTCTGCCTTTTCTTTTCTACG 59.073 40.000 0.00 0.00 0.00 3.51
780 805 6.929606 TGACTACTCTGCCTTTTCTTTTCTAC 59.070 38.462 0.00 0.00 0.00 2.59
781 806 7.015292 TCTGACTACTCTGCCTTTTCTTTTCTA 59.985 37.037 0.00 0.00 0.00 2.10
782 807 5.930135 TGACTACTCTGCCTTTTCTTTTCT 58.070 37.500 0.00 0.00 0.00 2.52
783 808 5.992217 TCTGACTACTCTGCCTTTTCTTTTC 59.008 40.000 0.00 0.00 0.00 2.29
784 809 5.930135 TCTGACTACTCTGCCTTTTCTTTT 58.070 37.500 0.00 0.00 0.00 2.27
785 810 5.071115 ACTCTGACTACTCTGCCTTTTCTTT 59.929 40.000 0.00 0.00 0.00 2.52
786 811 4.591072 ACTCTGACTACTCTGCCTTTTCTT 59.409 41.667 0.00 0.00 0.00 2.52
787 812 4.156477 ACTCTGACTACTCTGCCTTTTCT 58.844 43.478 0.00 0.00 0.00 2.52
788 813 4.219725 AGACTCTGACTACTCTGCCTTTTC 59.780 45.833 0.00 0.00 0.00 2.29
789 814 4.156477 AGACTCTGACTACTCTGCCTTTT 58.844 43.478 0.00 0.00 0.00 2.27
790 815 3.761752 GAGACTCTGACTACTCTGCCTTT 59.238 47.826 0.00 0.00 0.00 3.11
847 872 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
848 873 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
849 874 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
850 875 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
851 876 2.928116 GGACGAGTAATTTGGAACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
852 877 2.299582 TGGACGAGTAATTTGGAACGGA 59.700 45.455 0.00 0.00 0.00 4.69
853 878 2.671396 CTGGACGAGTAATTTGGAACGG 59.329 50.000 0.00 0.00 0.00 4.44
854 879 3.323243 ACTGGACGAGTAATTTGGAACG 58.677 45.455 0.00 0.00 30.86 3.95
864 889 4.487948 CGTTCCAAATTACTGGACGAGTA 58.512 43.478 12.16 0.00 45.37 2.59
865 890 3.323243 CGTTCCAAATTACTGGACGAGT 58.677 45.455 12.16 0.00 45.37 4.18
866 891 2.671396 CCGTTCCAAATTACTGGACGAG 59.329 50.000 16.23 5.70 45.37 4.18
867 892 2.299582 TCCGTTCCAAATTACTGGACGA 59.700 45.455 16.23 5.00 45.37 4.20
868 893 2.671396 CTCCGTTCCAAATTACTGGACG 59.329 50.000 0.00 6.35 45.37 4.79
869 894 3.007635 CCTCCGTTCCAAATTACTGGAC 58.992 50.000 0.00 0.00 45.37 4.02
870 895 2.026636 CCCTCCGTTCCAAATTACTGGA 60.027 50.000 0.00 0.00 43.99 3.86
871 896 2.026636 TCCCTCCGTTCCAAATTACTGG 60.027 50.000 0.00 0.00 37.87 4.00
872 897 3.270877 CTCCCTCCGTTCCAAATTACTG 58.729 50.000 0.00 0.00 0.00 2.74
873 898 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
874 899 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
875 900 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
876 901 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
877 902 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
878 903 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
879 904 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
880 905 1.621814 CAAACTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
881 906 1.066358 CCAAACTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
882 907 1.066358 CCCAAACTACTCCCTCCGTTC 60.066 57.143 0.00 0.00 0.00 3.95
883 908 0.981943 CCCAAACTACTCCCTCCGTT 59.018 55.000 0.00 0.00 0.00 4.44
884 909 0.115745 TCCCAAACTACTCCCTCCGT 59.884 55.000 0.00 0.00 0.00 4.69
885 910 1.139058 CATCCCAAACTACTCCCTCCG 59.861 57.143 0.00 0.00 0.00 4.63
886 911 1.134068 GCATCCCAAACTACTCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
887 912 1.840635 AGCATCCCAAACTACTCCCTC 59.159 52.381 0.00 0.00 0.00 4.30
888 913 1.972588 AGCATCCCAAACTACTCCCT 58.027 50.000 0.00 0.00 0.00 4.20
889 914 2.808906 AAGCATCCCAAACTACTCCC 57.191 50.000 0.00 0.00 0.00 4.30
890 915 4.200092 CCTTAAGCATCCCAAACTACTCC 58.800 47.826 0.00 0.00 0.00 3.85
891 916 3.628032 GCCTTAAGCATCCCAAACTACTC 59.372 47.826 0.00 0.00 42.97 2.59
892 917 3.621558 GCCTTAAGCATCCCAAACTACT 58.378 45.455 0.00 0.00 42.97 2.57
893 918 2.354821 CGCCTTAAGCATCCCAAACTAC 59.645 50.000 0.00 0.00 44.04 2.73
894 919 2.639065 CGCCTTAAGCATCCCAAACTA 58.361 47.619 0.00 0.00 44.04 2.24
895 920 1.463674 CGCCTTAAGCATCCCAAACT 58.536 50.000 0.00 0.00 44.04 2.66
896 921 0.455815 CCGCCTTAAGCATCCCAAAC 59.544 55.000 0.00 0.00 44.04 2.93
899 924 0.679640 CAACCGCCTTAAGCATCCCA 60.680 55.000 0.00 0.00 44.04 4.37
920 945 1.534235 ATGGCTAGGCTACCTCCGG 60.534 63.158 18.18 0.00 34.61 5.14
932 961 4.704057 TGTTTGTATGAACATGCATGGCTA 59.296 37.500 29.41 15.37 34.77 3.93
933 962 3.510753 TGTTTGTATGAACATGCATGGCT 59.489 39.130 29.41 16.73 34.77 4.75
934 963 3.847542 TGTTTGTATGAACATGCATGGC 58.152 40.909 29.41 20.69 34.77 4.40
935 964 7.030075 TCTATGTTTGTATGAACATGCATGG 57.970 36.000 29.41 12.50 46.60 3.66
936 965 8.400186 TCTTCTATGTTTGTATGAACATGCATG 58.600 33.333 25.09 25.09 46.60 4.06
950 979 3.007635 GGAACCGGGTCTTCTATGTTTG 58.992 50.000 21.19 0.00 0.00 2.93
1234 1264 1.095228 GCACAATAGCAAGGCGCCTA 61.095 55.000 33.07 15.54 44.04 3.93
1264 1294 2.529619 GGCTGCGGCGAGAGAATTC 61.530 63.158 12.98 0.00 39.81 2.17
1356 1386 4.842911 CGTCGTAGTAACTGCCGATATTAC 59.157 45.833 0.00 0.00 0.00 1.89
1362 1392 0.443869 GTCGTCGTAGTAACTGCCGA 59.556 55.000 0.00 0.00 0.00 5.54
1503 1539 3.124297 GTCGGGGATACTAAGATCGTACG 59.876 52.174 9.53 9.53 0.00 3.67
1612 1648 0.531200 GGAACGAGGGTGTCCTGTAG 59.469 60.000 0.00 0.00 45.05 2.74
2000 2247 2.037772 AGAAGAGTCGGCACATTCTGTT 59.962 45.455 1.26 0.00 32.42 3.16
2089 2336 3.123284 CGTAGCAGTAGTCGCCTAGATAC 59.877 52.174 0.00 0.00 0.00 2.24
2601 2860 2.743928 GGGAGACAAGGCTGTGCG 60.744 66.667 0.00 0.00 35.30 5.34
2620 2879 1.063942 GGGTTGAAATACCAGGGAGGG 60.064 57.143 0.00 0.00 43.89 4.30
2628 2887 2.081462 CTGTGGTCGGGTTGAAATACC 58.919 52.381 0.00 0.00 37.47 2.73
2643 2902 0.327924 TGACCATGGTTAGGCTGTGG 59.672 55.000 20.85 0.15 36.06 4.17
2663 2922 1.079888 GCAGATTTTGTTGCGGGGG 60.080 57.895 0.00 0.00 0.00 5.40
2673 2932 1.707427 AGGTGAGGGTCTGCAGATTTT 59.293 47.619 21.47 8.13 0.00 1.82
2739 3003 1.078848 GCTCATGGACTTGTCCGCT 60.079 57.895 14.24 2.59 0.00 5.52
2812 3076 2.823829 CGCGGATGGCTTTAGTGGC 61.824 63.158 0.00 0.00 40.44 5.01
2824 3088 2.419198 CTTAGCTCTGGCGCGGAT 59.581 61.111 8.83 0.00 44.37 4.18
2896 3160 2.184830 CGTCGGGGATGTCGAGCTA 61.185 63.158 0.00 0.00 37.31 3.32
2943 3207 1.338973 CCGCATAGCATGGCAATTTCT 59.661 47.619 0.00 0.00 0.00 2.52
3036 3300 1.137479 GTTGATTGGGCACATCATGGG 59.863 52.381 0.00 0.00 0.00 4.00
3453 3717 5.252630 AGGAAGATTCTTTGGTCCAGAGATT 59.747 40.000 12.70 9.41 0.00 2.40
3511 3775 8.311109 AGAGAGAAAAAGTTTTTGTTAAAGGCA 58.689 29.630 18.07 0.00 0.00 4.75
3568 3832 3.181530 CGAGTGACGTGATTTTGATGGAC 60.182 47.826 0.00 0.00 37.22 4.02
4000 4269 3.370231 GTGGCGCGGTTTTGGGAT 61.370 61.111 8.83 0.00 0.00 3.85
4086 4355 1.240256 GTTGGGGCACGTGTTGATTA 58.760 50.000 18.38 0.00 0.00 1.75
4177 4447 0.951558 GGTGTGCTGGTGATCGTTTT 59.048 50.000 0.00 0.00 0.00 2.43
4348 4618 0.602562 TTGCAGCACATACTTTGCCC 59.397 50.000 0.00 0.00 41.18 5.36
4358 4628 2.089201 CTCTCCATCAATTGCAGCACA 58.911 47.619 0.00 0.00 0.00 4.57
4431 4701 5.652891 CCATCAGCTAGTAGGGACGTTATAT 59.347 44.000 0.00 0.00 0.00 0.86
4458 4728 3.727726 TGAGCGTGAGAGTGAAATTCAA 58.272 40.909 0.00 0.00 0.00 2.69
4507 4777 0.249868 CGGAGCCGATAATTCCTGCA 60.250 55.000 2.00 0.00 42.83 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.