Multiple sequence alignment - TraesCS3B01G344200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G344200 chr3B 100.000 2482 0 0 1 2482 553569603 553572084 0.000000e+00 4584
1 TraesCS3B01G344200 chr3A 93.857 2165 74 26 337 2482 565463704 565465828 0.000000e+00 3206
2 TraesCS3B01G344200 chr3D 93.262 2152 90 24 339 2482 423390690 423388586 0.000000e+00 3120
3 TraesCS3B01G344200 chr2B 96.481 341 10 2 1 341 777172448 777172110 1.670000e-156 562
4 TraesCS3B01G344200 chr2B 94.940 336 16 1 1 336 248136376 248136710 2.190000e-145 525
5 TraesCS3B01G344200 chr1B 96.176 340 11 2 1 340 33935975 33936312 2.790000e-154 555
6 TraesCS3B01G344200 chr1B 82.659 346 40 15 1150 1483 566981228 566981565 3.120000e-74 289
7 TraesCS3B01G344200 chr5B 96.407 334 12 0 1 334 118947658 118947991 3.610000e-153 551
8 TraesCS3B01G344200 chr5D 92.920 339 18 6 1 336 353842116 353841781 2.870000e-134 488
9 TraesCS3B01G344200 chr4A 90.588 255 10 2 89 343 656499875 656500115 2.380000e-85 326
10 TraesCS3B01G344200 chr1D 83.768 345 34 16 1155 1483 419994500 419994838 8.620000e-80 307
11 TraesCS3B01G344200 chr1A 83.382 343 36 18 1155 1483 516586570 516586905 5.190000e-77 298
12 TraesCS3B01G344200 chr2A 87.778 180 5 1 155 334 698125024 698124862 7.000000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G344200 chr3B 553569603 553572084 2481 False 4584 4584 100.000 1 2482 1 chr3B.!!$F1 2481
1 TraesCS3B01G344200 chr3A 565463704 565465828 2124 False 3206 3206 93.857 337 2482 1 chr3A.!!$F1 2145
2 TraesCS3B01G344200 chr3D 423388586 423390690 2104 True 3120 3120 93.262 339 2482 1 chr3D.!!$R1 2143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.035739 TGGTTGTTAGGAGTTCCGCC 59.964 55.0 0.0 0.0 42.08 6.13 F
296 297 0.036765 GCCACGTGATTGTGTCCCTA 60.037 55.0 19.3 0.0 38.20 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1096 1100 0.672889 TGCACATGGAAAACACGCAT 59.327 45.0 0.0 0.0 30.0 4.73 R
1605 1618 0.743097 GGCAAGCAATCCATCTGACC 59.257 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.897350 GTATGGCGCTGGCACTCC 60.897 66.667 7.64 0.00 41.84 3.85
18 19 3.398310 TATGGCGCTGGCACTCCA 61.398 61.111 7.64 0.00 41.84 3.86
26 27 2.046023 TGGCACTCCAGCATTCCG 60.046 61.111 0.00 0.00 37.47 4.30
27 28 3.512516 GGCACTCCAGCATTCCGC 61.513 66.667 0.00 0.00 42.91 5.54
40 41 1.336887 CATTCCGCTCTACCGGTATGG 60.337 57.143 16.25 14.47 46.14 2.74
41 42 3.048602 CCGCTCTACCGGTATGGG 58.951 66.667 16.25 17.74 44.64 4.00
42 43 1.831286 CCGCTCTACCGGTATGGGT 60.831 63.158 16.25 0.00 44.64 4.51
43 44 0.538057 CCGCTCTACCGGTATGGGTA 60.538 60.000 16.25 0.00 44.64 3.69
44 45 0.595095 CGCTCTACCGGTATGGGTAC 59.405 60.000 16.25 1.16 44.64 3.34
45 46 1.696063 GCTCTACCGGTATGGGTACA 58.304 55.000 16.25 0.00 44.64 2.90
46 47 2.034124 GCTCTACCGGTATGGGTACAA 58.966 52.381 16.25 0.00 44.64 2.41
47 48 2.631545 GCTCTACCGGTATGGGTACAAT 59.368 50.000 16.25 0.00 44.64 2.71
48 49 3.305881 GCTCTACCGGTATGGGTACAATC 60.306 52.174 16.25 0.00 44.64 2.67
49 50 3.893200 CTCTACCGGTATGGGTACAATCA 59.107 47.826 16.25 0.00 44.64 2.57
50 51 3.893200 TCTACCGGTATGGGTACAATCAG 59.107 47.826 16.25 0.00 44.64 2.90
51 52 2.754465 ACCGGTATGGGTACAATCAGA 58.246 47.619 4.49 0.00 44.64 3.27
52 53 2.433239 ACCGGTATGGGTACAATCAGAC 59.567 50.000 4.49 0.00 44.64 3.51
53 54 2.698797 CCGGTATGGGTACAATCAGACT 59.301 50.000 0.00 0.00 32.25 3.24
54 55 3.243771 CCGGTATGGGTACAATCAGACTC 60.244 52.174 0.00 0.00 32.25 3.36
55 56 3.637229 CGGTATGGGTACAATCAGACTCT 59.363 47.826 0.00 0.00 32.25 3.24
56 57 4.099573 CGGTATGGGTACAATCAGACTCTT 59.900 45.833 0.00 0.00 32.25 2.85
57 58 5.602628 GGTATGGGTACAATCAGACTCTTC 58.397 45.833 0.00 0.00 32.25 2.87
58 59 5.128827 GGTATGGGTACAATCAGACTCTTCA 59.871 44.000 0.00 0.00 32.25 3.02
59 60 4.808414 TGGGTACAATCAGACTCTTCAG 57.192 45.455 0.00 0.00 0.00 3.02
60 61 4.160329 TGGGTACAATCAGACTCTTCAGT 58.840 43.478 0.00 0.00 34.57 3.41
61 62 5.330233 TGGGTACAATCAGACTCTTCAGTA 58.670 41.667 0.00 0.00 30.63 2.74
62 63 5.419155 TGGGTACAATCAGACTCTTCAGTAG 59.581 44.000 0.00 0.00 30.63 2.57
63 64 5.344884 GGTACAATCAGACTCTTCAGTAGC 58.655 45.833 0.00 0.00 30.63 3.58
64 65 4.103365 ACAATCAGACTCTTCAGTAGCG 57.897 45.455 0.00 0.00 30.63 4.26
65 66 3.508012 ACAATCAGACTCTTCAGTAGCGT 59.492 43.478 0.00 0.00 30.63 5.07
66 67 4.021894 ACAATCAGACTCTTCAGTAGCGTT 60.022 41.667 0.00 0.00 30.63 4.84
67 68 5.183331 ACAATCAGACTCTTCAGTAGCGTTA 59.817 40.000 0.00 0.00 30.63 3.18
68 69 6.127591 ACAATCAGACTCTTCAGTAGCGTTAT 60.128 38.462 0.00 0.00 30.63 1.89
69 70 5.487153 TCAGACTCTTCAGTAGCGTTATC 57.513 43.478 0.00 0.00 30.63 1.75
70 71 5.186942 TCAGACTCTTCAGTAGCGTTATCT 58.813 41.667 0.00 0.00 30.63 1.98
71 72 5.648526 TCAGACTCTTCAGTAGCGTTATCTT 59.351 40.000 0.00 0.00 30.63 2.40
72 73 5.968848 CAGACTCTTCAGTAGCGTTATCTTC 59.031 44.000 0.00 0.00 30.63 2.87
73 74 5.648526 AGACTCTTCAGTAGCGTTATCTTCA 59.351 40.000 0.00 0.00 30.63 3.02
74 75 5.642686 ACTCTTCAGTAGCGTTATCTTCAC 58.357 41.667 0.00 0.00 0.00 3.18
75 76 5.416326 ACTCTTCAGTAGCGTTATCTTCACT 59.584 40.000 0.00 0.00 0.00 3.41
76 77 5.881447 TCTTCAGTAGCGTTATCTTCACTC 58.119 41.667 0.00 0.00 0.00 3.51
77 78 4.274421 TCAGTAGCGTTATCTTCACTCG 57.726 45.455 0.00 0.00 0.00 4.18
78 79 3.688185 TCAGTAGCGTTATCTTCACTCGT 59.312 43.478 0.00 0.00 0.00 4.18
79 80 4.155462 TCAGTAGCGTTATCTTCACTCGTT 59.845 41.667 0.00 0.00 0.00 3.85
80 81 4.263209 CAGTAGCGTTATCTTCACTCGTTG 59.737 45.833 0.00 0.00 0.00 4.10
81 82 3.570926 AGCGTTATCTTCACTCGTTGA 57.429 42.857 0.00 0.00 0.00 3.18
82 83 4.111375 AGCGTTATCTTCACTCGTTGAT 57.889 40.909 0.00 0.00 32.84 2.57
83 84 3.859961 AGCGTTATCTTCACTCGTTGATG 59.140 43.478 0.00 0.00 32.84 3.07
84 85 3.542291 GCGTTATCTTCACTCGTTGATGC 60.542 47.826 0.00 0.00 32.84 3.91
85 86 3.612423 CGTTATCTTCACTCGTTGATGCA 59.388 43.478 0.00 0.00 32.84 3.96
86 87 4.091365 CGTTATCTTCACTCGTTGATGCAA 59.909 41.667 0.00 0.00 32.84 4.08
87 88 5.554636 GTTATCTTCACTCGTTGATGCAAG 58.445 41.667 0.00 0.00 32.84 4.01
88 89 3.111853 TCTTCACTCGTTGATGCAAGT 57.888 42.857 0.00 0.00 32.84 3.16
89 90 3.466836 TCTTCACTCGTTGATGCAAGTT 58.533 40.909 0.00 0.00 32.84 2.66
90 91 3.876914 TCTTCACTCGTTGATGCAAGTTT 59.123 39.130 0.00 0.00 32.84 2.66
91 92 3.607422 TCACTCGTTGATGCAAGTTTG 57.393 42.857 0.00 0.00 0.00 2.93
92 93 2.942376 TCACTCGTTGATGCAAGTTTGT 59.058 40.909 0.00 0.00 0.00 2.83
93 94 3.002246 TCACTCGTTGATGCAAGTTTGTC 59.998 43.478 0.00 0.00 0.00 3.18
94 95 2.290641 ACTCGTTGATGCAAGTTTGTCC 59.709 45.455 0.00 0.00 0.00 4.02
95 96 2.290367 CTCGTTGATGCAAGTTTGTCCA 59.710 45.455 0.00 0.00 0.00 4.02
96 97 2.290367 TCGTTGATGCAAGTTTGTCCAG 59.710 45.455 0.00 0.00 0.00 3.86
97 98 2.290367 CGTTGATGCAAGTTTGTCCAGA 59.710 45.455 0.00 0.00 0.00 3.86
98 99 3.058016 CGTTGATGCAAGTTTGTCCAGAT 60.058 43.478 0.00 0.00 0.00 2.90
99 100 4.479619 GTTGATGCAAGTTTGTCCAGATC 58.520 43.478 0.00 0.00 0.00 2.75
100 101 3.084039 TGATGCAAGTTTGTCCAGATCC 58.916 45.455 0.00 0.00 0.00 3.36
101 102 1.522668 TGCAAGTTTGTCCAGATCCG 58.477 50.000 0.00 0.00 0.00 4.18
102 103 1.202758 TGCAAGTTTGTCCAGATCCGT 60.203 47.619 0.00 0.00 0.00 4.69
103 104 1.464997 GCAAGTTTGTCCAGATCCGTC 59.535 52.381 0.00 0.00 0.00 4.79
104 105 2.872038 GCAAGTTTGTCCAGATCCGTCT 60.872 50.000 0.00 0.00 34.14 4.18
105 106 3.616560 GCAAGTTTGTCCAGATCCGTCTA 60.617 47.826 0.00 0.00 32.09 2.59
106 107 4.759782 CAAGTTTGTCCAGATCCGTCTAT 58.240 43.478 0.00 0.00 32.09 1.98
107 108 4.392921 AGTTTGTCCAGATCCGTCTATG 57.607 45.455 0.00 0.00 32.09 2.23
108 109 3.133003 AGTTTGTCCAGATCCGTCTATGG 59.867 47.826 0.00 0.00 32.09 2.74
109 110 1.040646 TGTCCAGATCCGTCTATGGC 58.959 55.000 0.00 0.00 32.09 4.40
110 111 0.318762 GTCCAGATCCGTCTATGGCC 59.681 60.000 0.00 0.00 32.09 5.36
111 112 0.105709 TCCAGATCCGTCTATGGCCA 60.106 55.000 8.56 8.56 32.09 5.36
112 113 0.979665 CCAGATCCGTCTATGGCCAT 59.020 55.000 24.45 24.45 32.09 4.40
113 114 1.066573 CCAGATCCGTCTATGGCCATC 60.067 57.143 24.80 7.24 32.09 3.51
114 115 1.898472 CAGATCCGTCTATGGCCATCT 59.102 52.381 24.80 8.68 32.09 2.90
115 116 2.301296 CAGATCCGTCTATGGCCATCTT 59.699 50.000 24.80 0.75 32.09 2.40
116 117 2.301296 AGATCCGTCTATGGCCATCTTG 59.699 50.000 24.80 14.01 31.36 3.02
117 118 1.496060 TCCGTCTATGGCCATCTTGT 58.504 50.000 24.80 0.00 0.00 3.16
118 119 1.837439 TCCGTCTATGGCCATCTTGTT 59.163 47.619 24.80 0.00 0.00 2.83
119 120 1.942657 CCGTCTATGGCCATCTTGTTG 59.057 52.381 24.80 8.53 0.00 3.33
120 121 1.331756 CGTCTATGGCCATCTTGTTGC 59.668 52.381 24.80 5.93 0.00 4.17
121 122 2.648059 GTCTATGGCCATCTTGTTGCT 58.352 47.619 24.80 0.00 0.00 3.91
122 123 2.357009 GTCTATGGCCATCTTGTTGCTG 59.643 50.000 24.80 2.68 0.00 4.41
123 124 2.239402 TCTATGGCCATCTTGTTGCTGA 59.761 45.455 24.80 0.00 0.00 4.26
124 125 1.927487 ATGGCCATCTTGTTGCTGAA 58.073 45.000 14.09 0.00 0.00 3.02
125 126 1.702182 TGGCCATCTTGTTGCTGAAA 58.298 45.000 0.00 0.00 0.00 2.69
126 127 2.250031 TGGCCATCTTGTTGCTGAAAT 58.750 42.857 0.00 0.00 0.00 2.17
127 128 2.231964 TGGCCATCTTGTTGCTGAAATC 59.768 45.455 0.00 0.00 0.00 2.17
128 129 2.231964 GGCCATCTTGTTGCTGAAATCA 59.768 45.455 0.00 0.00 0.00 2.57
129 130 3.306225 GGCCATCTTGTTGCTGAAATCAA 60.306 43.478 0.00 0.00 0.00 2.57
130 131 3.924686 GCCATCTTGTTGCTGAAATCAAG 59.075 43.478 0.00 0.00 38.69 3.02
131 132 4.560108 GCCATCTTGTTGCTGAAATCAAGT 60.560 41.667 9.19 0.00 38.53 3.16
132 133 5.159209 CCATCTTGTTGCTGAAATCAAGTC 58.841 41.667 9.19 0.00 38.53 3.01
133 134 5.048224 CCATCTTGTTGCTGAAATCAAGTCT 60.048 40.000 9.19 0.31 38.53 3.24
134 135 5.679734 TCTTGTTGCTGAAATCAAGTCTC 57.320 39.130 9.19 0.00 38.53 3.36
135 136 5.371526 TCTTGTTGCTGAAATCAAGTCTCT 58.628 37.500 9.19 0.00 38.53 3.10
136 137 6.524734 TCTTGTTGCTGAAATCAAGTCTCTA 58.475 36.000 9.19 0.00 38.53 2.43
137 138 6.992123 TCTTGTTGCTGAAATCAAGTCTCTAA 59.008 34.615 9.19 0.00 38.53 2.10
138 139 7.663081 TCTTGTTGCTGAAATCAAGTCTCTAAT 59.337 33.333 9.19 0.00 38.53 1.73
139 140 7.137490 TGTTGCTGAAATCAAGTCTCTAATG 57.863 36.000 0.00 0.00 0.00 1.90
140 141 6.149973 TGTTGCTGAAATCAAGTCTCTAATGG 59.850 38.462 0.00 0.00 0.00 3.16
141 142 6.053632 TGCTGAAATCAAGTCTCTAATGGA 57.946 37.500 0.00 0.00 0.00 3.41
142 143 6.111382 TGCTGAAATCAAGTCTCTAATGGAG 58.889 40.000 0.00 0.00 43.12 3.86
143 144 5.526846 GCTGAAATCAAGTCTCTAATGGAGG 59.473 44.000 0.00 0.00 42.10 4.30
144 145 6.631314 GCTGAAATCAAGTCTCTAATGGAGGA 60.631 42.308 0.00 0.00 42.10 3.71
145 146 7.257790 TGAAATCAAGTCTCTAATGGAGGAA 57.742 36.000 0.00 0.00 42.10 3.36
146 147 7.689299 TGAAATCAAGTCTCTAATGGAGGAAA 58.311 34.615 0.00 0.00 42.10 3.13
147 148 7.826252 TGAAATCAAGTCTCTAATGGAGGAAAG 59.174 37.037 0.00 0.00 42.10 2.62
148 149 5.683876 TCAAGTCTCTAATGGAGGAAAGG 57.316 43.478 0.00 0.00 42.10 3.11
149 150 4.471386 TCAAGTCTCTAATGGAGGAAAGGG 59.529 45.833 0.00 0.00 42.10 3.95
150 151 4.354208 AGTCTCTAATGGAGGAAAGGGA 57.646 45.455 0.00 0.00 42.10 4.20
151 152 4.294347 AGTCTCTAATGGAGGAAAGGGAG 58.706 47.826 0.00 0.00 42.10 4.30
152 153 4.034410 GTCTCTAATGGAGGAAAGGGAGT 58.966 47.826 0.00 0.00 42.10 3.85
153 154 4.471747 GTCTCTAATGGAGGAAAGGGAGTT 59.528 45.833 0.00 0.00 42.10 3.01
154 155 4.717280 TCTCTAATGGAGGAAAGGGAGTTC 59.283 45.833 0.00 0.00 42.10 3.01
155 156 4.435137 TCTAATGGAGGAAAGGGAGTTCA 58.565 43.478 0.00 0.00 0.00 3.18
156 157 5.039645 TCTAATGGAGGAAAGGGAGTTCAT 58.960 41.667 0.00 0.00 0.00 2.57
157 158 4.682021 AATGGAGGAAAGGGAGTTCATT 57.318 40.909 0.00 0.00 0.00 2.57
158 159 3.721087 TGGAGGAAAGGGAGTTCATTC 57.279 47.619 0.00 0.00 0.00 2.67
159 160 2.308866 TGGAGGAAAGGGAGTTCATTCC 59.691 50.000 0.00 0.00 41.32 3.01
160 161 2.633488 GAGGAAAGGGAGTTCATTCCG 58.367 52.381 0.00 0.00 44.78 4.30
161 162 2.236395 GAGGAAAGGGAGTTCATTCCGA 59.764 50.000 0.00 0.00 44.78 4.55
162 163 2.642807 AGGAAAGGGAGTTCATTCCGAA 59.357 45.455 0.00 0.00 44.78 4.30
163 164 3.010420 GGAAAGGGAGTTCATTCCGAAG 58.990 50.000 0.00 0.00 38.17 3.79
164 165 3.307480 GGAAAGGGAGTTCATTCCGAAGA 60.307 47.826 0.00 0.00 38.17 2.87
165 166 4.324267 GAAAGGGAGTTCATTCCGAAGAA 58.676 43.478 0.00 0.00 38.17 2.52
166 167 4.367039 AAGGGAGTTCATTCCGAAGAAA 57.633 40.909 0.00 0.00 38.17 2.52
167 168 4.367039 AGGGAGTTCATTCCGAAGAAAA 57.633 40.909 0.00 0.00 38.17 2.29
168 169 4.923415 AGGGAGTTCATTCCGAAGAAAAT 58.077 39.130 0.00 0.00 38.17 1.82
169 170 5.325239 AGGGAGTTCATTCCGAAGAAAATT 58.675 37.500 0.00 0.00 38.17 1.82
170 171 6.481643 AGGGAGTTCATTCCGAAGAAAATTA 58.518 36.000 0.00 0.00 38.17 1.40
171 172 6.374613 AGGGAGTTCATTCCGAAGAAAATTAC 59.625 38.462 0.00 0.00 38.17 1.89
172 173 6.374613 GGGAGTTCATTCCGAAGAAAATTACT 59.625 38.462 0.00 0.00 38.17 2.24
173 174 7.551617 GGGAGTTCATTCCGAAGAAAATTACTA 59.448 37.037 0.00 0.00 38.17 1.82
174 175 8.604890 GGAGTTCATTCCGAAGAAAATTACTAG 58.395 37.037 0.00 0.00 35.09 2.57
175 176 9.367444 GAGTTCATTCCGAAGAAAATTACTAGA 57.633 33.333 0.00 0.00 35.09 2.43
176 177 9.720769 AGTTCATTCCGAAGAAAATTACTAGAA 57.279 29.630 0.00 0.00 35.09 2.10
177 178 9.974750 GTTCATTCCGAAGAAAATTACTAGAAG 57.025 33.333 0.00 0.00 35.09 2.85
178 179 9.720769 TTCATTCCGAAGAAAATTACTAGAAGT 57.279 29.630 0.00 0.00 35.09 3.01
179 180 9.367444 TCATTCCGAAGAAAATTACTAGAAGTC 57.633 33.333 0.00 0.00 35.09 3.01
180 181 9.151471 CATTCCGAAGAAAATTACTAGAAGTCA 57.849 33.333 0.00 0.00 35.09 3.41
181 182 9.720769 ATTCCGAAGAAAATTACTAGAAGTCAA 57.279 29.630 0.00 0.00 35.09 3.18
182 183 9.550406 TTCCGAAGAAAATTACTAGAAGTCAAA 57.450 29.630 0.00 0.00 0.00 2.69
183 184 9.550406 TCCGAAGAAAATTACTAGAAGTCAAAA 57.450 29.630 0.00 0.00 0.00 2.44
192 193 7.916914 TTACTAGAAGTCAAAATAGGGTTGC 57.083 36.000 0.00 0.00 0.00 4.17
193 194 5.876357 ACTAGAAGTCAAAATAGGGTTGCA 58.124 37.500 0.00 0.00 0.00 4.08
194 195 5.940470 ACTAGAAGTCAAAATAGGGTTGCAG 59.060 40.000 0.00 0.00 0.00 4.41
195 196 4.985538 AGAAGTCAAAATAGGGTTGCAGA 58.014 39.130 0.00 0.00 0.00 4.26
196 197 5.574188 AGAAGTCAAAATAGGGTTGCAGAT 58.426 37.500 0.00 0.00 0.00 2.90
197 198 6.012745 AGAAGTCAAAATAGGGTTGCAGATT 58.987 36.000 0.00 0.00 0.00 2.40
198 199 5.649782 AGTCAAAATAGGGTTGCAGATTG 57.350 39.130 0.00 0.00 0.00 2.67
199 200 5.079643 AGTCAAAATAGGGTTGCAGATTGT 58.920 37.500 0.00 0.00 0.00 2.71
200 201 5.539955 AGTCAAAATAGGGTTGCAGATTGTT 59.460 36.000 0.00 0.00 0.00 2.83
201 202 6.041979 AGTCAAAATAGGGTTGCAGATTGTTT 59.958 34.615 0.00 0.00 0.00 2.83
202 203 6.146021 GTCAAAATAGGGTTGCAGATTGTTTG 59.854 38.462 0.00 0.00 0.00 2.93
203 204 4.806640 AATAGGGTTGCAGATTGTTTGG 57.193 40.909 0.00 0.00 0.00 3.28
204 205 0.681175 AGGGTTGCAGATTGTTTGGC 59.319 50.000 0.00 0.00 0.00 4.52
205 206 0.320683 GGGTTGCAGATTGTTTGGCC 60.321 55.000 0.00 0.00 0.00 5.36
206 207 0.681175 GGTTGCAGATTGTTTGGCCT 59.319 50.000 3.32 0.00 0.00 5.19
207 208 1.337167 GGTTGCAGATTGTTTGGCCTC 60.337 52.381 3.32 0.00 0.00 4.70
208 209 1.615392 GTTGCAGATTGTTTGGCCTCT 59.385 47.619 3.32 0.00 0.00 3.69
209 210 1.999648 TGCAGATTGTTTGGCCTCTT 58.000 45.000 3.32 0.00 0.00 2.85
210 211 3.153369 TGCAGATTGTTTGGCCTCTTA 57.847 42.857 3.32 0.00 0.00 2.10
211 212 3.700538 TGCAGATTGTTTGGCCTCTTAT 58.299 40.909 3.32 0.00 0.00 1.73
212 213 4.854173 TGCAGATTGTTTGGCCTCTTATA 58.146 39.130 3.32 0.00 0.00 0.98
213 214 4.883585 TGCAGATTGTTTGGCCTCTTATAG 59.116 41.667 3.32 0.00 0.00 1.31
214 215 4.261363 GCAGATTGTTTGGCCTCTTATAGC 60.261 45.833 3.32 0.00 0.00 2.97
219 220 4.363034 GGCCTCTTATAGCCGCAC 57.637 61.111 0.00 0.00 39.87 5.34
220 221 1.301795 GGCCTCTTATAGCCGCACC 60.302 63.158 0.00 0.00 39.87 5.01
221 222 1.664965 GCCTCTTATAGCCGCACCG 60.665 63.158 0.00 0.00 0.00 4.94
225 226 0.601558 TCTTATAGCCGCACCGGATC 59.398 55.000 9.46 0.00 44.45 3.36
226 227 0.389948 CTTATAGCCGCACCGGATCC 60.390 60.000 9.46 0.00 44.45 3.36
227 228 0.830444 TTATAGCCGCACCGGATCCT 60.830 55.000 9.46 0.00 44.45 3.24
228 229 1.532604 TATAGCCGCACCGGATCCTG 61.533 60.000 9.46 5.80 44.45 3.86
230 231 2.914756 TAGCCGCACCGGATCCTGTA 62.915 60.000 9.46 0.00 44.45 2.74
232 233 3.207354 CGCACCGGATCCTGTACT 58.793 61.111 9.46 0.00 0.00 2.73
233 234 1.226974 CGCACCGGATCCTGTACTG 60.227 63.158 9.46 0.00 0.00 2.74
234 235 1.521681 GCACCGGATCCTGTACTGC 60.522 63.158 9.46 5.06 0.00 4.40
235 236 1.897423 CACCGGATCCTGTACTGCA 59.103 57.895 9.46 0.00 0.00 4.41
236 237 0.179100 CACCGGATCCTGTACTGCAG 60.179 60.000 13.48 13.48 44.63 4.41
237 238 0.614979 ACCGGATCCTGTACTGCAGT 60.615 55.000 25.12 25.12 43.55 4.40
238 239 0.179100 CCGGATCCTGTACTGCAGTG 60.179 60.000 29.57 12.63 43.55 3.66
239 240 0.532573 CGGATCCTGTACTGCAGTGT 59.467 55.000 29.57 6.74 43.55 3.55
240 241 1.737029 CGGATCCTGTACTGCAGTGTG 60.737 57.143 29.57 17.36 43.55 3.82
241 242 1.406069 GGATCCTGTACTGCAGTGTGG 60.406 57.143 29.57 24.59 43.55 4.17
242 243 1.276421 GATCCTGTACTGCAGTGTGGT 59.724 52.381 29.57 16.34 43.55 4.16
243 244 1.128200 TCCTGTACTGCAGTGTGGTT 58.872 50.000 29.57 3.26 43.55 3.67
244 245 1.202639 TCCTGTACTGCAGTGTGGTTG 60.203 52.381 29.57 12.34 43.55 3.77
245 246 1.475034 CCTGTACTGCAGTGTGGTTGT 60.475 52.381 29.57 2.60 43.55 3.32
246 247 2.288666 CTGTACTGCAGTGTGGTTGTT 58.711 47.619 29.57 0.80 40.27 2.83
247 248 3.462982 CTGTACTGCAGTGTGGTTGTTA 58.537 45.455 29.57 2.44 40.27 2.41
248 249 3.462982 TGTACTGCAGTGTGGTTGTTAG 58.537 45.455 29.57 0.00 0.00 2.34
249 250 1.967319 ACTGCAGTGTGGTTGTTAGG 58.033 50.000 20.97 0.00 0.00 2.69
250 251 1.488812 ACTGCAGTGTGGTTGTTAGGA 59.511 47.619 20.97 0.00 0.00 2.94
251 252 2.146342 CTGCAGTGTGGTTGTTAGGAG 58.854 52.381 5.25 0.00 0.00 3.69
252 253 1.488812 TGCAGTGTGGTTGTTAGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
253 254 2.092646 TGCAGTGTGGTTGTTAGGAGTT 60.093 45.455 0.00 0.00 0.00 3.01
254 255 2.548480 GCAGTGTGGTTGTTAGGAGTTC 59.452 50.000 0.00 0.00 0.00 3.01
255 256 3.139077 CAGTGTGGTTGTTAGGAGTTCC 58.861 50.000 0.00 0.00 0.00 3.62
256 257 2.140717 GTGTGGTTGTTAGGAGTTCCG 58.859 52.381 0.00 0.00 42.08 4.30
257 258 1.154197 GTGGTTGTTAGGAGTTCCGC 58.846 55.000 0.00 0.00 42.08 5.54
258 259 0.035739 TGGTTGTTAGGAGTTCCGCC 59.964 55.000 0.00 0.00 42.08 6.13
259 260 1.017701 GGTTGTTAGGAGTTCCGCCG 61.018 60.000 0.00 0.00 42.08 6.46
260 261 0.320160 GTTGTTAGGAGTTCCGCCGT 60.320 55.000 0.00 0.00 42.08 5.68
261 262 0.320073 TTGTTAGGAGTTCCGCCGTG 60.320 55.000 0.00 0.00 42.08 4.94
262 263 1.291272 GTTAGGAGTTCCGCCGTGT 59.709 57.895 0.00 0.00 42.08 4.49
263 264 0.527565 GTTAGGAGTTCCGCCGTGTA 59.472 55.000 0.00 0.00 42.08 2.90
264 265 1.135721 GTTAGGAGTTCCGCCGTGTAT 59.864 52.381 0.00 0.00 42.08 2.29
265 266 2.346766 TAGGAGTTCCGCCGTGTATA 57.653 50.000 0.00 0.00 42.08 1.47
266 267 1.477553 AGGAGTTCCGCCGTGTATAA 58.522 50.000 0.00 0.00 42.08 0.98
267 268 2.037144 AGGAGTTCCGCCGTGTATAAT 58.963 47.619 0.00 0.00 42.08 1.28
268 269 2.132762 GGAGTTCCGCCGTGTATAATG 58.867 52.381 0.00 0.00 0.00 1.90
269 270 2.132762 GAGTTCCGCCGTGTATAATGG 58.867 52.381 0.00 0.00 38.09 3.16
270 271 1.758280 AGTTCCGCCGTGTATAATGGA 59.242 47.619 0.00 0.00 37.06 3.41
271 272 2.168936 AGTTCCGCCGTGTATAATGGAA 59.831 45.455 0.00 0.00 37.06 3.53
272 273 2.228138 TCCGCCGTGTATAATGGAAC 57.772 50.000 0.00 0.00 37.06 3.62
273 274 1.758280 TCCGCCGTGTATAATGGAACT 59.242 47.619 0.00 0.00 37.06 3.01
274 275 2.168936 TCCGCCGTGTATAATGGAACTT 59.831 45.455 0.00 0.00 37.06 2.66
275 276 2.286833 CCGCCGTGTATAATGGAACTTG 59.713 50.000 0.00 0.00 37.06 3.16
276 277 2.933906 CGCCGTGTATAATGGAACTTGT 59.066 45.455 0.00 0.00 37.06 3.16
277 278 3.242284 CGCCGTGTATAATGGAACTTGTG 60.242 47.826 0.00 0.00 37.06 3.33
278 279 3.486875 GCCGTGTATAATGGAACTTGTGC 60.487 47.826 0.00 0.00 37.06 4.57
279 280 3.064820 CCGTGTATAATGGAACTTGTGCC 59.935 47.826 0.00 0.00 37.06 5.01
280 281 3.687212 CGTGTATAATGGAACTTGTGCCA 59.313 43.478 2.51 2.51 38.78 4.92
281 282 4.436852 CGTGTATAATGGAACTTGTGCCAC 60.437 45.833 2.00 0.00 36.92 5.01
282 283 3.687212 TGTATAATGGAACTTGTGCCACG 59.313 43.478 2.00 0.00 36.92 4.94
283 284 2.264005 TAATGGAACTTGTGCCACGT 57.736 45.000 2.00 0.00 36.92 4.49
284 285 0.667993 AATGGAACTTGTGCCACGTG 59.332 50.000 9.08 9.08 36.92 4.49
285 286 0.179032 ATGGAACTTGTGCCACGTGA 60.179 50.000 19.30 0.00 36.92 4.35
286 287 0.179032 TGGAACTTGTGCCACGTGAT 60.179 50.000 19.30 0.00 0.00 3.06
287 288 0.951558 GGAACTTGTGCCACGTGATT 59.048 50.000 19.30 0.00 0.00 2.57
288 289 1.334960 GGAACTTGTGCCACGTGATTG 60.335 52.381 19.30 0.72 0.00 2.67
289 290 1.333619 GAACTTGTGCCACGTGATTGT 59.666 47.619 19.30 4.05 0.00 2.71
290 291 0.662619 ACTTGTGCCACGTGATTGTG 59.337 50.000 19.30 0.00 39.60 3.33
291 292 0.662619 CTTGTGCCACGTGATTGTGT 59.337 50.000 19.30 0.00 38.20 3.72
292 293 0.660488 TTGTGCCACGTGATTGTGTC 59.340 50.000 19.30 0.81 38.20 3.67
293 294 1.163420 TGTGCCACGTGATTGTGTCC 61.163 55.000 19.30 0.00 38.20 4.02
294 295 1.599518 TGCCACGTGATTGTGTCCC 60.600 57.895 19.30 0.00 38.20 4.46
295 296 1.302511 GCCACGTGATTGTGTCCCT 60.303 57.895 19.30 0.00 38.20 4.20
296 297 0.036765 GCCACGTGATTGTGTCCCTA 60.037 55.000 19.30 0.00 38.20 3.53
297 298 1.406887 GCCACGTGATTGTGTCCCTAT 60.407 52.381 19.30 0.00 38.20 2.57
298 299 2.279741 CCACGTGATTGTGTCCCTATG 58.720 52.381 19.30 0.00 38.20 2.23
299 300 2.354704 CCACGTGATTGTGTCCCTATGT 60.355 50.000 19.30 0.00 38.20 2.29
300 301 3.334691 CACGTGATTGTGTCCCTATGTT 58.665 45.455 10.90 0.00 35.12 2.71
301 302 3.370978 CACGTGATTGTGTCCCTATGTTC 59.629 47.826 10.90 0.00 35.12 3.18
302 303 3.260884 ACGTGATTGTGTCCCTATGTTCT 59.739 43.478 0.00 0.00 0.00 3.01
303 304 4.253685 CGTGATTGTGTCCCTATGTTCTT 58.746 43.478 0.00 0.00 0.00 2.52
304 305 4.093408 CGTGATTGTGTCCCTATGTTCTTG 59.907 45.833 0.00 0.00 0.00 3.02
305 306 4.396166 GTGATTGTGTCCCTATGTTCTTGG 59.604 45.833 0.00 0.00 0.00 3.61
306 307 4.288366 TGATTGTGTCCCTATGTTCTTGGA 59.712 41.667 0.00 0.00 0.00 3.53
307 308 4.715534 TTGTGTCCCTATGTTCTTGGAA 57.284 40.909 0.00 0.00 0.00 3.53
308 309 4.927267 TGTGTCCCTATGTTCTTGGAAT 57.073 40.909 0.00 0.00 0.00 3.01
309 310 6.381498 TTGTGTCCCTATGTTCTTGGAATA 57.619 37.500 0.00 0.00 0.00 1.75
310 311 6.381498 TGTGTCCCTATGTTCTTGGAATAA 57.619 37.500 0.00 0.00 0.00 1.40
311 312 6.785076 TGTGTCCCTATGTTCTTGGAATAAA 58.215 36.000 0.00 0.00 0.00 1.40
312 313 7.235079 TGTGTCCCTATGTTCTTGGAATAAAA 58.765 34.615 0.00 0.00 0.00 1.52
313 314 7.175990 TGTGTCCCTATGTTCTTGGAATAAAAC 59.824 37.037 0.00 0.00 0.00 2.43
314 315 7.393515 GTGTCCCTATGTTCTTGGAATAAAACT 59.606 37.037 0.00 0.00 0.00 2.66
315 316 7.610305 TGTCCCTATGTTCTTGGAATAAAACTC 59.390 37.037 0.00 0.00 0.00 3.01
316 317 7.610305 GTCCCTATGTTCTTGGAATAAAACTCA 59.390 37.037 0.00 0.00 0.00 3.41
317 318 7.610305 TCCCTATGTTCTTGGAATAAAACTCAC 59.390 37.037 0.00 0.00 0.00 3.51
318 319 7.611855 CCCTATGTTCTTGGAATAAAACTCACT 59.388 37.037 0.00 0.00 0.00 3.41
319 320 9.014297 CCTATGTTCTTGGAATAAAACTCACTT 57.986 33.333 0.00 0.00 0.00 3.16
322 323 9.750125 ATGTTCTTGGAATAAAACTCACTTTTC 57.250 29.630 0.00 0.00 33.84 2.29
323 324 8.966868 TGTTCTTGGAATAAAACTCACTTTTCT 58.033 29.630 0.00 0.00 33.84 2.52
324 325 9.452065 GTTCTTGGAATAAAACTCACTTTTCTC 57.548 33.333 0.00 0.00 33.84 2.87
325 326 8.166422 TCTTGGAATAAAACTCACTTTTCTCC 57.834 34.615 0.00 0.00 35.91 3.71
326 327 6.894339 TGGAATAAAACTCACTTTTCTCCC 57.106 37.500 0.00 0.00 35.17 4.30
327 328 5.472137 TGGAATAAAACTCACTTTTCTCCCG 59.528 40.000 0.00 0.00 35.17 5.14
328 329 5.372547 AATAAAACTCACTTTTCTCCCGC 57.627 39.130 0.00 0.00 33.84 6.13
329 330 2.341846 AAACTCACTTTTCTCCCGCA 57.658 45.000 0.00 0.00 0.00 5.69
330 331 2.341846 AACTCACTTTTCTCCCGCAA 57.658 45.000 0.00 0.00 0.00 4.85
331 332 2.341846 ACTCACTTTTCTCCCGCAAA 57.658 45.000 0.00 0.00 0.00 3.68
332 333 2.650322 ACTCACTTTTCTCCCGCAAAA 58.350 42.857 0.00 0.00 0.00 2.44
333 334 3.020984 ACTCACTTTTCTCCCGCAAAAA 58.979 40.909 0.00 0.00 0.00 1.94
363 364 2.092429 TGGCTCAGAGTTTGTGAACCTT 60.092 45.455 0.00 0.00 36.39 3.50
416 417 7.296628 TGGCAAACTATGACAAAATTAACCT 57.703 32.000 0.00 0.00 46.71 3.50
433 436 0.758685 CCTCAAACCAAACAGGCCCA 60.759 55.000 0.00 0.00 43.14 5.36
452 455 5.067805 GGCCCATAGTTTAAGAGTTCAATGG 59.932 44.000 0.00 0.00 33.86 3.16
507 510 8.622948 AGCCCATAAGCTAAGTGTAATTTATC 57.377 34.615 0.00 0.00 42.70 1.75
508 511 7.665974 AGCCCATAAGCTAAGTGTAATTTATCC 59.334 37.037 0.00 0.00 42.70 2.59
509 512 7.665974 GCCCATAAGCTAAGTGTAATTTATCCT 59.334 37.037 0.00 0.00 0.00 3.24
510 513 9.574516 CCCATAAGCTAAGTGTAATTTATCCTT 57.425 33.333 0.00 0.00 0.00 3.36
515 518 8.738645 AGCTAAGTGTAATTTATCCTTCTTGG 57.261 34.615 0.00 0.00 37.10 3.61
597 600 0.264657 AAGTGGGGCCAAAACTTCCT 59.735 50.000 4.39 0.00 27.92 3.36
635 638 0.251634 TAGCATCGGGACAACATGCA 59.748 50.000 5.95 0.00 40.41 3.96
649 652 8.603181 GGGACAACATGCAATTAATTAATCAAC 58.397 33.333 11.08 4.97 0.00 3.18
804 807 1.586422 CCACGACAGGATAGCCAATG 58.414 55.000 0.00 0.00 36.29 2.82
860 863 3.309675 CGGCCTCGCTTATTGTCG 58.690 61.111 0.00 0.00 0.00 4.35
861 864 1.226859 CGGCCTCGCTTATTGTCGA 60.227 57.895 0.00 0.00 0.00 4.20
862 865 0.597637 CGGCCTCGCTTATTGTCGAT 60.598 55.000 0.00 0.00 33.98 3.59
863 866 1.335597 CGGCCTCGCTTATTGTCGATA 60.336 52.381 0.00 0.00 33.98 2.92
864 867 2.750948 GGCCTCGCTTATTGTCGATAA 58.249 47.619 0.00 0.00 33.98 1.75
865 868 2.475487 GGCCTCGCTTATTGTCGATAAC 59.525 50.000 0.00 0.00 33.98 1.89
866 869 3.381949 GCCTCGCTTATTGTCGATAACT 58.618 45.455 0.00 0.00 33.98 2.24
867 870 3.425858 GCCTCGCTTATTGTCGATAACTC 59.574 47.826 0.00 0.00 33.98 3.01
966 969 1.534959 ACTCTCCAGCACCAGCAGA 60.535 57.895 0.00 0.00 45.49 4.26
967 970 1.218585 CTCTCCAGCACCAGCAGAG 59.781 63.158 0.00 0.00 45.49 3.35
1116 1124 0.457443 TGCGTGTTTTCCATGTGCAA 59.543 45.000 0.00 0.00 32.30 4.08
1117 1125 1.134995 TGCGTGTTTTCCATGTGCAAA 60.135 42.857 0.00 0.00 32.30 3.68
1124 1132 0.040514 TTCCATGTGCAAAGTTCGCG 60.041 50.000 0.00 0.00 0.00 5.87
1130 1138 4.404654 GCAAAGTTCGCGGCCCAG 62.405 66.667 6.13 0.00 0.00 4.45
1497 1510 6.195700 TCCCTCTAAGCTACACATAGTTTCT 58.804 40.000 0.00 0.00 34.13 2.52
1498 1511 6.321690 TCCCTCTAAGCTACACATAGTTTCTC 59.678 42.308 0.00 0.00 34.13 2.87
1499 1512 6.461788 CCCTCTAAGCTACACATAGTTTCTCC 60.462 46.154 0.00 0.00 34.13 3.71
1605 1618 2.283617 CCATTCTGAGAGATGTTTCGCG 59.716 50.000 0.00 0.00 0.00 5.87
1615 1628 0.249120 ATGTTTCGCGGTCAGATGGA 59.751 50.000 6.13 0.00 0.00 3.41
1638 1651 3.860930 TTGCCCCGCCTTGAAGACC 62.861 63.158 0.00 0.00 0.00 3.85
1646 1659 2.027625 CCTTGAAGACCGTGCGTCC 61.028 63.158 0.00 0.00 43.08 4.79
1742 1759 3.136763 GCTGATCTGTGATGGTATGTGG 58.863 50.000 1.27 0.00 0.00 4.17
1796 1813 9.587772 CTAGTGTACATAACTTTACATCAGCTT 57.412 33.333 0.00 0.00 31.05 3.74
1818 1836 8.806146 AGCTTTTGATCAAAACCATATAACAGT 58.194 29.630 26.01 2.14 35.57 3.55
1850 1868 4.310769 GGATCGCTGCAACAGAATATACT 58.689 43.478 0.00 0.00 32.44 2.12
1851 1869 4.752101 GGATCGCTGCAACAGAATATACTT 59.248 41.667 0.00 0.00 32.44 2.24
1924 1942 3.243737 CCAAGTTAGGTGGAAAAACTGGC 60.244 47.826 0.00 0.00 38.54 4.85
2147 2165 1.801178 GAGCTCTTGACCTGGTTTTCG 59.199 52.381 6.43 0.00 0.00 3.46
2285 2303 1.134367 TCTGCGTGTTATCCTCTTCGG 59.866 52.381 0.00 0.00 0.00 4.30
2293 2311 3.181469 TGTTATCCTCTTCGGCATGGTAC 60.181 47.826 0.00 0.00 0.00 3.34
2344 2362 1.339151 CCTGGACAAACTCCCTAGCAC 60.339 57.143 0.00 0.00 38.49 4.40
2465 2485 8.647796 TGGTAAGTATGGTATTCCTGTAGAATG 58.352 37.037 0.00 0.00 45.11 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.897350 GGAGTGCCAGCGCCATAC 60.897 66.667 2.29 0.00 0.00 2.39
1 2 3.398310 TGGAGTGCCAGCGCCATA 61.398 61.111 2.29 0.00 39.92 2.74
9 10 2.046023 CGGAATGCTGGAGTGCCA 60.046 61.111 0.00 0.00 43.47 4.92
10 11 3.512516 GCGGAATGCTGGAGTGCC 61.513 66.667 0.00 0.00 41.73 5.01
19 20 0.317479 ATACCGGTAGAGCGGAATGC 59.683 55.000 25.68 0.00 46.98 3.56
20 21 1.336887 CCATACCGGTAGAGCGGAATG 60.337 57.143 25.68 11.33 0.00 2.67
21 22 0.966920 CCATACCGGTAGAGCGGAAT 59.033 55.000 25.68 7.77 0.00 3.01
22 23 1.111116 CCCATACCGGTAGAGCGGAA 61.111 60.000 25.68 0.00 0.00 4.30
23 24 1.529948 CCCATACCGGTAGAGCGGA 60.530 63.158 25.68 10.42 0.00 5.54
24 25 0.538057 TACCCATACCGGTAGAGCGG 60.538 60.000 20.91 18.10 37.34 5.52
25 26 0.595095 GTACCCATACCGGTAGAGCG 59.405 60.000 20.91 9.89 39.08 5.03
26 27 1.696063 TGTACCCATACCGGTAGAGC 58.304 55.000 20.91 7.35 39.08 4.09
27 28 3.893200 TGATTGTACCCATACCGGTAGAG 59.107 47.826 20.91 14.50 39.08 2.43
28 29 3.893200 CTGATTGTACCCATACCGGTAGA 59.107 47.826 20.91 0.00 39.08 2.59
29 30 3.893200 TCTGATTGTACCCATACCGGTAG 59.107 47.826 20.91 9.14 39.08 3.18
30 31 3.638160 GTCTGATTGTACCCATACCGGTA 59.362 47.826 18.46 18.46 37.34 4.02
31 32 2.433239 GTCTGATTGTACCCATACCGGT 59.567 50.000 13.98 13.98 40.13 5.28
32 33 2.698797 AGTCTGATTGTACCCATACCGG 59.301 50.000 0.00 0.00 0.00 5.28
33 34 3.637229 AGAGTCTGATTGTACCCATACCG 59.363 47.826 0.00 0.00 0.00 4.02
34 35 5.128827 TGAAGAGTCTGATTGTACCCATACC 59.871 44.000 0.00 0.00 0.00 2.73
35 36 6.127310 ACTGAAGAGTCTGATTGTACCCATAC 60.127 42.308 0.00 0.00 0.00 2.39
36 37 5.958380 ACTGAAGAGTCTGATTGTACCCATA 59.042 40.000 0.00 0.00 0.00 2.74
37 38 4.780021 ACTGAAGAGTCTGATTGTACCCAT 59.220 41.667 0.00 0.00 0.00 4.00
38 39 4.160329 ACTGAAGAGTCTGATTGTACCCA 58.840 43.478 0.00 0.00 0.00 4.51
39 40 4.810191 ACTGAAGAGTCTGATTGTACCC 57.190 45.455 0.00 0.00 0.00 3.69
40 41 5.344884 GCTACTGAAGAGTCTGATTGTACC 58.655 45.833 0.00 0.00 33.21 3.34
41 42 5.031578 CGCTACTGAAGAGTCTGATTGTAC 58.968 45.833 0.00 0.00 33.21 2.90
42 43 4.700692 ACGCTACTGAAGAGTCTGATTGTA 59.299 41.667 0.00 0.00 31.95 2.41
43 44 3.508012 ACGCTACTGAAGAGTCTGATTGT 59.492 43.478 0.00 0.00 31.95 2.71
44 45 4.103365 ACGCTACTGAAGAGTCTGATTG 57.897 45.455 0.00 0.00 31.95 2.67
45 46 4.792521 AACGCTACTGAAGAGTCTGATT 57.207 40.909 0.00 0.00 37.23 2.57
46 47 5.825679 AGATAACGCTACTGAAGAGTCTGAT 59.174 40.000 0.00 0.00 37.23 2.90
47 48 5.186942 AGATAACGCTACTGAAGAGTCTGA 58.813 41.667 0.00 0.00 37.23 3.27
48 49 5.493133 AGATAACGCTACTGAAGAGTCTG 57.507 43.478 0.00 0.00 37.23 3.51
49 50 5.648526 TGAAGATAACGCTACTGAAGAGTCT 59.351 40.000 0.00 0.00 37.23 3.24
50 51 5.740099 GTGAAGATAACGCTACTGAAGAGTC 59.260 44.000 0.00 0.00 37.23 3.36
51 52 5.416326 AGTGAAGATAACGCTACTGAAGAGT 59.584 40.000 0.00 0.00 40.33 3.24
52 53 5.885881 AGTGAAGATAACGCTACTGAAGAG 58.114 41.667 0.00 0.00 0.00 2.85
53 54 5.447413 CGAGTGAAGATAACGCTACTGAAGA 60.447 44.000 0.00 0.00 0.00 2.87
54 55 4.731000 CGAGTGAAGATAACGCTACTGAAG 59.269 45.833 0.00 0.00 0.00 3.02
55 56 4.155462 ACGAGTGAAGATAACGCTACTGAA 59.845 41.667 0.00 0.00 0.00 3.02
56 57 3.688185 ACGAGTGAAGATAACGCTACTGA 59.312 43.478 0.00 0.00 0.00 3.41
57 58 4.017380 ACGAGTGAAGATAACGCTACTG 57.983 45.455 0.00 0.00 0.00 2.74
58 59 4.155462 TCAACGAGTGAAGATAACGCTACT 59.845 41.667 0.00 0.00 31.51 2.57
59 60 4.409570 TCAACGAGTGAAGATAACGCTAC 58.590 43.478 0.00 0.00 31.51 3.58
60 61 4.690184 TCAACGAGTGAAGATAACGCTA 57.310 40.909 0.00 0.00 31.51 4.26
61 62 3.570926 TCAACGAGTGAAGATAACGCT 57.429 42.857 0.00 0.00 31.51 5.07
62 63 3.542291 GCATCAACGAGTGAAGATAACGC 60.542 47.826 0.00 0.00 40.50 4.84
63 64 3.612423 TGCATCAACGAGTGAAGATAACG 59.388 43.478 0.00 0.00 40.50 3.18
64 65 5.120830 ACTTGCATCAACGAGTGAAGATAAC 59.879 40.000 0.00 0.00 40.50 1.89
65 66 5.237815 ACTTGCATCAACGAGTGAAGATAA 58.762 37.500 0.00 0.00 40.50 1.75
66 67 4.820897 ACTTGCATCAACGAGTGAAGATA 58.179 39.130 0.00 0.00 40.50 1.98
67 68 3.668447 ACTTGCATCAACGAGTGAAGAT 58.332 40.909 0.00 0.00 40.50 2.40
68 69 3.111853 ACTTGCATCAACGAGTGAAGA 57.888 42.857 0.00 0.00 40.50 2.87
69 70 3.885484 AACTTGCATCAACGAGTGAAG 57.115 42.857 0.00 0.00 40.50 3.02
70 71 3.376859 ACAAACTTGCATCAACGAGTGAA 59.623 39.130 0.00 0.00 40.50 3.18
71 72 2.942376 ACAAACTTGCATCAACGAGTGA 59.058 40.909 0.00 0.00 41.67 3.41
72 73 3.291585 GACAAACTTGCATCAACGAGTG 58.708 45.455 0.00 0.00 34.40 3.51
73 74 2.290641 GGACAAACTTGCATCAACGAGT 59.709 45.455 0.00 0.00 35.72 4.18
74 75 2.290367 TGGACAAACTTGCATCAACGAG 59.710 45.455 0.00 0.00 0.00 4.18
75 76 2.290367 CTGGACAAACTTGCATCAACGA 59.710 45.455 0.00 0.00 0.00 3.85
76 77 2.290367 TCTGGACAAACTTGCATCAACG 59.710 45.455 0.00 0.00 0.00 4.10
77 78 3.988379 TCTGGACAAACTTGCATCAAC 57.012 42.857 0.00 0.00 0.00 3.18
78 79 3.507233 GGATCTGGACAAACTTGCATCAA 59.493 43.478 0.00 0.00 0.00 2.57
79 80 3.084039 GGATCTGGACAAACTTGCATCA 58.916 45.455 0.00 0.00 0.00 3.07
80 81 2.096496 CGGATCTGGACAAACTTGCATC 59.904 50.000 0.00 0.00 0.00 3.91
81 82 2.086869 CGGATCTGGACAAACTTGCAT 58.913 47.619 0.00 0.00 0.00 3.96
82 83 1.202758 ACGGATCTGGACAAACTTGCA 60.203 47.619 6.47 0.00 0.00 4.08
83 84 1.464997 GACGGATCTGGACAAACTTGC 59.535 52.381 6.47 0.00 0.00 4.01
84 85 3.045601 AGACGGATCTGGACAAACTTG 57.954 47.619 6.47 0.00 32.29 3.16
85 86 4.383118 CCATAGACGGATCTGGACAAACTT 60.383 45.833 6.47 0.00 36.29 2.66
86 87 3.133003 CCATAGACGGATCTGGACAAACT 59.867 47.826 6.47 0.00 36.29 2.66
87 88 3.458189 CCATAGACGGATCTGGACAAAC 58.542 50.000 6.47 0.00 36.29 2.93
88 89 2.158957 GCCATAGACGGATCTGGACAAA 60.159 50.000 6.47 0.00 36.29 2.83
89 90 1.412710 GCCATAGACGGATCTGGACAA 59.587 52.381 6.47 0.00 36.29 3.18
90 91 1.040646 GCCATAGACGGATCTGGACA 58.959 55.000 6.47 0.00 36.29 4.02
91 92 0.318762 GGCCATAGACGGATCTGGAC 59.681 60.000 6.47 0.00 36.29 4.02
92 93 0.105709 TGGCCATAGACGGATCTGGA 60.106 55.000 0.00 0.00 36.29 3.86
93 94 0.979665 ATGGCCATAGACGGATCTGG 59.020 55.000 19.18 0.00 36.29 3.86
94 95 1.898472 AGATGGCCATAGACGGATCTG 59.102 52.381 20.84 0.00 36.29 2.90
95 96 2.301296 CAAGATGGCCATAGACGGATCT 59.699 50.000 20.84 6.84 39.15 2.75
96 97 2.037772 ACAAGATGGCCATAGACGGATC 59.962 50.000 20.84 4.09 0.00 3.36
97 98 2.050144 ACAAGATGGCCATAGACGGAT 58.950 47.619 20.84 0.00 0.00 4.18
98 99 1.496060 ACAAGATGGCCATAGACGGA 58.504 50.000 20.84 0.00 0.00 4.69
99 100 1.942657 CAACAAGATGGCCATAGACGG 59.057 52.381 20.84 9.41 0.00 4.79
100 101 1.331756 GCAACAAGATGGCCATAGACG 59.668 52.381 20.84 10.25 0.00 4.18
101 102 2.357009 CAGCAACAAGATGGCCATAGAC 59.643 50.000 20.84 6.50 0.00 2.59
102 103 2.239402 TCAGCAACAAGATGGCCATAGA 59.761 45.455 20.84 2.94 33.49 1.98
103 104 2.646930 TCAGCAACAAGATGGCCATAG 58.353 47.619 20.84 14.31 33.49 2.23
104 105 2.804986 TCAGCAACAAGATGGCCATA 57.195 45.000 20.84 0.00 33.49 2.74
105 106 1.927487 TTCAGCAACAAGATGGCCAT 58.073 45.000 20.96 20.96 33.49 4.40
106 107 1.702182 TTTCAGCAACAAGATGGCCA 58.298 45.000 8.56 8.56 33.49 5.36
107 108 2.231964 TGATTTCAGCAACAAGATGGCC 59.768 45.455 0.00 0.00 33.49 5.36
108 109 3.581024 TGATTTCAGCAACAAGATGGC 57.419 42.857 0.00 0.00 33.49 4.40
109 110 5.048224 AGACTTGATTTCAGCAACAAGATGG 60.048 40.000 0.00 0.00 41.16 3.51
110 111 6.010294 AGACTTGATTTCAGCAACAAGATG 57.990 37.500 0.00 0.00 41.16 2.90
111 112 6.002704 AGAGACTTGATTTCAGCAACAAGAT 58.997 36.000 0.00 0.00 41.16 2.40
112 113 5.371526 AGAGACTTGATTTCAGCAACAAGA 58.628 37.500 0.00 0.00 41.16 3.02
113 114 5.686159 AGAGACTTGATTTCAGCAACAAG 57.314 39.130 0.00 0.00 43.30 3.16
114 115 7.308770 CCATTAGAGACTTGATTTCAGCAACAA 60.309 37.037 0.00 0.00 0.00 2.83
115 116 6.149973 CCATTAGAGACTTGATTTCAGCAACA 59.850 38.462 0.00 0.00 0.00 3.33
116 117 6.372659 TCCATTAGAGACTTGATTTCAGCAAC 59.627 38.462 0.00 0.00 0.00 4.17
117 118 6.475504 TCCATTAGAGACTTGATTTCAGCAA 58.524 36.000 0.00 0.00 0.00 3.91
118 119 6.053632 TCCATTAGAGACTTGATTTCAGCA 57.946 37.500 0.00 0.00 0.00 4.41
119 120 5.526846 CCTCCATTAGAGACTTGATTTCAGC 59.473 44.000 0.00 0.00 46.50 4.26
120 121 6.882656 TCCTCCATTAGAGACTTGATTTCAG 58.117 40.000 0.00 0.00 46.50 3.02
121 122 6.874278 TCCTCCATTAGAGACTTGATTTCA 57.126 37.500 0.00 0.00 46.50 2.69
122 123 7.281999 CCTTTCCTCCATTAGAGACTTGATTTC 59.718 40.741 0.00 0.00 46.50 2.17
123 124 7.115414 CCTTTCCTCCATTAGAGACTTGATTT 58.885 38.462 0.00 0.00 46.50 2.17
124 125 6.353429 CCCTTTCCTCCATTAGAGACTTGATT 60.353 42.308 0.00 0.00 46.50 2.57
125 126 5.131809 CCCTTTCCTCCATTAGAGACTTGAT 59.868 44.000 0.00 0.00 46.50 2.57
126 127 4.471386 CCCTTTCCTCCATTAGAGACTTGA 59.529 45.833 0.00 0.00 46.50 3.02
127 128 4.471386 TCCCTTTCCTCCATTAGAGACTTG 59.529 45.833 0.00 0.00 46.50 3.16
128 129 4.699994 TCCCTTTCCTCCATTAGAGACTT 58.300 43.478 0.00 0.00 46.50 3.01
129 130 4.265078 ACTCCCTTTCCTCCATTAGAGACT 60.265 45.833 0.00 0.00 46.50 3.24
130 131 4.034410 ACTCCCTTTCCTCCATTAGAGAC 58.966 47.826 0.00 0.00 46.50 3.36
131 132 4.354208 ACTCCCTTTCCTCCATTAGAGA 57.646 45.455 0.00 0.00 46.50 3.10
132 133 4.471386 TGAACTCCCTTTCCTCCATTAGAG 59.529 45.833 0.00 0.00 42.83 2.43
133 134 4.435137 TGAACTCCCTTTCCTCCATTAGA 58.565 43.478 0.00 0.00 0.00 2.10
134 135 4.844349 TGAACTCCCTTTCCTCCATTAG 57.156 45.455 0.00 0.00 0.00 1.73
135 136 5.340027 GGAATGAACTCCCTTTCCTCCATTA 60.340 44.000 0.00 0.00 37.38 1.90
136 137 4.570719 GGAATGAACTCCCTTTCCTCCATT 60.571 45.833 0.00 0.00 37.38 3.16
137 138 3.053320 GGAATGAACTCCCTTTCCTCCAT 60.053 47.826 0.00 0.00 37.38 3.41
138 139 2.308866 GGAATGAACTCCCTTTCCTCCA 59.691 50.000 0.00 0.00 37.38 3.86
139 140 2.681097 CGGAATGAACTCCCTTTCCTCC 60.681 54.545 0.00 0.00 37.89 4.30
140 141 2.236395 TCGGAATGAACTCCCTTTCCTC 59.764 50.000 0.00 0.00 37.89 3.71
141 142 2.266279 TCGGAATGAACTCCCTTTCCT 58.734 47.619 0.00 0.00 37.89 3.36
142 143 2.781681 TCGGAATGAACTCCCTTTCC 57.218 50.000 0.00 0.00 37.15 3.13
143 144 3.939066 TCTTCGGAATGAACTCCCTTTC 58.061 45.455 0.00 0.00 31.87 2.62
144 145 4.367039 TTCTTCGGAATGAACTCCCTTT 57.633 40.909 0.00 0.00 31.87 3.11
145 146 4.367039 TTTCTTCGGAATGAACTCCCTT 57.633 40.909 0.00 0.00 33.58 3.95
146 147 4.367039 TTTTCTTCGGAATGAACTCCCT 57.633 40.909 0.00 0.00 33.58 4.20
147 148 5.644977 AATTTTCTTCGGAATGAACTCCC 57.355 39.130 0.00 0.00 33.58 4.30
148 149 7.379098 AGTAATTTTCTTCGGAATGAACTCC 57.621 36.000 0.00 0.00 33.58 3.85
149 150 9.367444 TCTAGTAATTTTCTTCGGAATGAACTC 57.633 33.333 0.00 0.00 33.58 3.01
150 151 9.720769 TTCTAGTAATTTTCTTCGGAATGAACT 57.279 29.630 0.00 0.00 33.58 3.01
151 152 9.974750 CTTCTAGTAATTTTCTTCGGAATGAAC 57.025 33.333 0.00 0.00 33.58 3.18
152 153 9.720769 ACTTCTAGTAATTTTCTTCGGAATGAA 57.279 29.630 0.00 0.00 33.58 2.57
153 154 9.367444 GACTTCTAGTAATTTTCTTCGGAATGA 57.633 33.333 0.00 0.00 33.58 2.57
154 155 9.151471 TGACTTCTAGTAATTTTCTTCGGAATG 57.849 33.333 0.00 0.00 33.58 2.67
155 156 9.720769 TTGACTTCTAGTAATTTTCTTCGGAAT 57.279 29.630 0.00 0.00 33.58 3.01
156 157 9.550406 TTTGACTTCTAGTAATTTTCTTCGGAA 57.450 29.630 0.00 0.00 0.00 4.30
157 158 9.550406 TTTTGACTTCTAGTAATTTTCTTCGGA 57.450 29.630 0.00 0.00 0.00 4.55
166 167 8.957466 GCAACCCTATTTTGACTTCTAGTAATT 58.043 33.333 0.00 0.00 0.00 1.40
167 168 8.107095 TGCAACCCTATTTTGACTTCTAGTAAT 58.893 33.333 0.00 0.00 0.00 1.89
168 169 7.455058 TGCAACCCTATTTTGACTTCTAGTAA 58.545 34.615 0.00 0.00 0.00 2.24
169 170 7.011499 TGCAACCCTATTTTGACTTCTAGTA 57.989 36.000 0.00 0.00 0.00 1.82
170 171 5.876357 TGCAACCCTATTTTGACTTCTAGT 58.124 37.500 0.00 0.00 0.00 2.57
171 172 6.173339 TCTGCAACCCTATTTTGACTTCTAG 58.827 40.000 0.00 0.00 0.00 2.43
172 173 6.121776 TCTGCAACCCTATTTTGACTTCTA 57.878 37.500 0.00 0.00 0.00 2.10
173 174 4.985538 TCTGCAACCCTATTTTGACTTCT 58.014 39.130 0.00 0.00 0.00 2.85
174 175 5.904362 ATCTGCAACCCTATTTTGACTTC 57.096 39.130 0.00 0.00 0.00 3.01
175 176 5.539955 ACAATCTGCAACCCTATTTTGACTT 59.460 36.000 0.00 0.00 0.00 3.01
176 177 5.079643 ACAATCTGCAACCCTATTTTGACT 58.920 37.500 0.00 0.00 0.00 3.41
177 178 5.391312 ACAATCTGCAACCCTATTTTGAC 57.609 39.130 0.00 0.00 0.00 3.18
178 179 6.222389 CAAACAATCTGCAACCCTATTTTGA 58.778 36.000 0.00 0.00 0.00 2.69
179 180 5.409214 CCAAACAATCTGCAACCCTATTTTG 59.591 40.000 0.00 0.00 0.00 2.44
180 181 5.550290 CCAAACAATCTGCAACCCTATTTT 58.450 37.500 0.00 0.00 0.00 1.82
181 182 4.563374 GCCAAACAATCTGCAACCCTATTT 60.563 41.667 0.00 0.00 0.00 1.40
182 183 3.055891 GCCAAACAATCTGCAACCCTATT 60.056 43.478 0.00 0.00 0.00 1.73
183 184 2.497273 GCCAAACAATCTGCAACCCTAT 59.503 45.455 0.00 0.00 0.00 2.57
184 185 1.892474 GCCAAACAATCTGCAACCCTA 59.108 47.619 0.00 0.00 0.00 3.53
185 186 0.681175 GCCAAACAATCTGCAACCCT 59.319 50.000 0.00 0.00 0.00 4.34
186 187 0.320683 GGCCAAACAATCTGCAACCC 60.321 55.000 0.00 0.00 0.00 4.11
187 188 0.681175 AGGCCAAACAATCTGCAACC 59.319 50.000 5.01 0.00 0.00 3.77
188 189 1.615392 AGAGGCCAAACAATCTGCAAC 59.385 47.619 5.01 0.00 0.00 4.17
189 190 1.999648 AGAGGCCAAACAATCTGCAA 58.000 45.000 5.01 0.00 0.00 4.08
190 191 1.999648 AAGAGGCCAAACAATCTGCA 58.000 45.000 5.01 0.00 0.00 4.41
191 192 4.261363 GCTATAAGAGGCCAAACAATCTGC 60.261 45.833 5.01 0.00 0.00 4.26
192 193 4.276926 GGCTATAAGAGGCCAAACAATCTG 59.723 45.833 5.01 0.00 46.84 2.90
193 194 4.464947 GGCTATAAGAGGCCAAACAATCT 58.535 43.478 5.01 0.00 46.84 2.40
194 195 4.837896 GGCTATAAGAGGCCAAACAATC 57.162 45.455 5.01 0.00 46.84 2.67
204 205 1.006102 CCGGTGCGGCTATAAGAGG 60.006 63.158 0.00 0.00 41.17 3.69
205 206 4.655527 CCGGTGCGGCTATAAGAG 57.344 61.111 0.00 0.00 41.17 2.85
215 216 1.226974 CAGTACAGGATCCGGTGCG 60.227 63.158 25.72 16.49 32.92 5.34
216 217 1.521681 GCAGTACAGGATCCGGTGC 60.522 63.158 25.72 23.94 0.00 5.01
217 218 0.179100 CTGCAGTACAGGATCCGGTG 60.179 60.000 25.72 13.25 43.19 4.94
218 219 2.202866 CTGCAGTACAGGATCCGGT 58.797 57.895 21.60 21.60 43.19 5.28
227 228 2.411628 AACAACCACACTGCAGTACA 57.588 45.000 21.20 0.00 0.00 2.90
228 229 2.806244 CCTAACAACCACACTGCAGTAC 59.194 50.000 21.20 0.00 0.00 2.73
229 230 2.701423 TCCTAACAACCACACTGCAGTA 59.299 45.455 21.20 0.00 0.00 2.74
230 231 1.488812 TCCTAACAACCACACTGCAGT 59.511 47.619 15.25 15.25 0.00 4.40
231 232 2.146342 CTCCTAACAACCACACTGCAG 58.854 52.381 13.48 13.48 0.00 4.41
232 233 1.488812 ACTCCTAACAACCACACTGCA 59.511 47.619 0.00 0.00 0.00 4.41
233 234 2.256117 ACTCCTAACAACCACACTGC 57.744 50.000 0.00 0.00 0.00 4.40
234 235 3.139077 GGAACTCCTAACAACCACACTG 58.861 50.000 0.00 0.00 0.00 3.66
235 236 2.224209 CGGAACTCCTAACAACCACACT 60.224 50.000 0.00 0.00 0.00 3.55
236 237 2.140717 CGGAACTCCTAACAACCACAC 58.859 52.381 0.00 0.00 0.00 3.82
237 238 1.541670 GCGGAACTCCTAACAACCACA 60.542 52.381 0.00 0.00 0.00 4.17
238 239 1.154197 GCGGAACTCCTAACAACCAC 58.846 55.000 0.00 0.00 0.00 4.16
239 240 0.035739 GGCGGAACTCCTAACAACCA 59.964 55.000 0.00 0.00 0.00 3.67
240 241 1.017701 CGGCGGAACTCCTAACAACC 61.018 60.000 0.00 0.00 0.00 3.77
241 242 0.320160 ACGGCGGAACTCCTAACAAC 60.320 55.000 13.24 0.00 0.00 3.32
242 243 0.320073 CACGGCGGAACTCCTAACAA 60.320 55.000 13.24 0.00 0.00 2.83
243 244 1.290955 CACGGCGGAACTCCTAACA 59.709 57.895 13.24 0.00 0.00 2.41
244 245 0.527565 TACACGGCGGAACTCCTAAC 59.472 55.000 13.24 0.00 0.00 2.34
245 246 1.477553 ATACACGGCGGAACTCCTAA 58.522 50.000 13.24 0.00 0.00 2.69
246 247 2.346766 TATACACGGCGGAACTCCTA 57.653 50.000 13.24 0.00 0.00 2.94
247 248 1.477553 TTATACACGGCGGAACTCCT 58.522 50.000 13.24 0.00 0.00 3.69
248 249 2.132762 CATTATACACGGCGGAACTCC 58.867 52.381 13.24 0.00 0.00 3.85
249 250 2.132762 CCATTATACACGGCGGAACTC 58.867 52.381 13.24 0.00 0.00 3.01
250 251 1.758280 TCCATTATACACGGCGGAACT 59.242 47.619 13.24 0.00 0.00 3.01
251 252 2.228138 TCCATTATACACGGCGGAAC 57.772 50.000 13.24 0.00 0.00 3.62
252 253 2.168936 AGTTCCATTATACACGGCGGAA 59.831 45.455 13.24 0.00 0.00 4.30
253 254 1.758280 AGTTCCATTATACACGGCGGA 59.242 47.619 13.24 0.00 0.00 5.54
254 255 2.234300 AGTTCCATTATACACGGCGG 57.766 50.000 13.24 2.35 0.00 6.13
255 256 2.933906 ACAAGTTCCATTATACACGGCG 59.066 45.455 4.80 4.80 0.00 6.46
256 257 3.486875 GCACAAGTTCCATTATACACGGC 60.487 47.826 0.00 0.00 0.00 5.68
257 258 3.064820 GGCACAAGTTCCATTATACACGG 59.935 47.826 0.00 0.00 0.00 4.94
258 259 3.687212 TGGCACAAGTTCCATTATACACG 59.313 43.478 0.00 0.00 31.92 4.49
259 260 4.436852 CGTGGCACAAGTTCCATTATACAC 60.437 45.833 19.09 0.00 44.16 2.90
260 261 3.687212 CGTGGCACAAGTTCCATTATACA 59.313 43.478 19.09 0.00 44.16 2.29
261 262 4.273005 CGTGGCACAAGTTCCATTATAC 57.727 45.455 19.09 0.00 44.16 1.47
272 273 0.662619 ACACAATCACGTGGCACAAG 59.337 50.000 19.09 9.22 44.16 3.16
273 274 0.660488 GACACAATCACGTGGCACAA 59.340 50.000 19.09 2.40 44.86 3.33
274 275 2.316237 GACACAATCACGTGGCACA 58.684 52.632 19.09 0.00 44.86 4.57
277 278 0.036765 TAGGGACACAATCACGTGGC 60.037 55.000 17.00 0.00 44.76 5.01
278 279 2.279741 CATAGGGACACAATCACGTGG 58.720 52.381 17.00 1.74 41.38 4.94
279 280 2.972625 ACATAGGGACACAATCACGTG 58.027 47.619 9.94 9.94 42.81 4.49
280 281 3.260884 AGAACATAGGGACACAATCACGT 59.739 43.478 0.00 0.00 35.00 4.49
281 282 3.861840 AGAACATAGGGACACAATCACG 58.138 45.455 0.00 0.00 35.00 4.35
282 283 4.396166 CCAAGAACATAGGGACACAATCAC 59.604 45.833 0.00 0.00 0.00 3.06
283 284 4.288366 TCCAAGAACATAGGGACACAATCA 59.712 41.667 0.00 0.00 0.00 2.57
284 285 4.843728 TCCAAGAACATAGGGACACAATC 58.156 43.478 0.00 0.00 0.00 2.67
285 286 4.927267 TCCAAGAACATAGGGACACAAT 57.073 40.909 0.00 0.00 0.00 2.71
286 287 4.715534 TTCCAAGAACATAGGGACACAA 57.284 40.909 0.00 0.00 0.00 3.33
287 288 4.927267 ATTCCAAGAACATAGGGACACA 57.073 40.909 0.00 0.00 0.00 3.72
288 289 7.393515 AGTTTTATTCCAAGAACATAGGGACAC 59.606 37.037 0.00 0.00 0.00 3.67
289 290 7.466804 AGTTTTATTCCAAGAACATAGGGACA 58.533 34.615 0.00 0.00 0.00 4.02
290 291 7.610305 TGAGTTTTATTCCAAGAACATAGGGAC 59.390 37.037 0.00 0.00 0.00 4.46
291 292 7.610305 GTGAGTTTTATTCCAAGAACATAGGGA 59.390 37.037 0.00 0.00 0.00 4.20
292 293 7.611855 AGTGAGTTTTATTCCAAGAACATAGGG 59.388 37.037 0.00 0.00 0.00 3.53
293 294 8.567285 AGTGAGTTTTATTCCAAGAACATAGG 57.433 34.615 0.00 0.00 0.00 2.57
296 297 9.750125 GAAAAGTGAGTTTTATTCCAAGAACAT 57.250 29.630 0.00 0.00 38.54 2.71
297 298 8.966868 AGAAAAGTGAGTTTTATTCCAAGAACA 58.033 29.630 0.00 0.00 38.54 3.18
298 299 9.452065 GAGAAAAGTGAGTTTTATTCCAAGAAC 57.548 33.333 0.00 0.00 38.54 3.01
299 300 8.630037 GGAGAAAAGTGAGTTTTATTCCAAGAA 58.370 33.333 17.12 0.00 39.55 2.52
300 301 7.230712 GGGAGAAAAGTGAGTTTTATTCCAAGA 59.769 37.037 20.76 0.00 42.59 3.02
301 302 7.371159 GGGAGAAAAGTGAGTTTTATTCCAAG 58.629 38.462 20.76 0.00 42.59 3.61
302 303 6.016610 CGGGAGAAAAGTGAGTTTTATTCCAA 60.017 38.462 15.61 0.00 43.04 3.53
303 304 5.472137 CGGGAGAAAAGTGAGTTTTATTCCA 59.528 40.000 15.61 0.00 43.04 3.53
304 305 5.619309 GCGGGAGAAAAGTGAGTTTTATTCC 60.619 44.000 7.27 7.27 40.45 3.01
305 306 5.048991 TGCGGGAGAAAAGTGAGTTTTATTC 60.049 40.000 0.00 0.00 38.54 1.75
306 307 4.825085 TGCGGGAGAAAAGTGAGTTTTATT 59.175 37.500 0.00 0.00 38.54 1.40
307 308 4.394729 TGCGGGAGAAAAGTGAGTTTTAT 58.605 39.130 0.00 0.00 38.54 1.40
308 309 3.811083 TGCGGGAGAAAAGTGAGTTTTA 58.189 40.909 0.00 0.00 38.54 1.52
309 310 2.650322 TGCGGGAGAAAAGTGAGTTTT 58.350 42.857 0.00 0.00 41.29 2.43
310 311 2.341846 TGCGGGAGAAAAGTGAGTTT 57.658 45.000 0.00 0.00 0.00 2.66
311 312 2.341846 TTGCGGGAGAAAAGTGAGTT 57.658 45.000 0.00 0.00 0.00 3.01
312 313 2.341846 TTTGCGGGAGAAAAGTGAGT 57.658 45.000 0.00 0.00 30.81 3.41
313 314 3.708563 TTTTTGCGGGAGAAAAGTGAG 57.291 42.857 0.00 0.00 38.91 3.51
331 332 3.891049 ACTCTGAGCCACACTTCTTTTT 58.109 40.909 4.19 0.00 0.00 1.94
332 333 3.567478 ACTCTGAGCCACACTTCTTTT 57.433 42.857 4.19 0.00 0.00 2.27
333 334 3.567478 AACTCTGAGCCACACTTCTTT 57.433 42.857 4.19 0.00 0.00 2.52
334 335 3.209410 CAAACTCTGAGCCACACTTCTT 58.791 45.455 4.19 0.00 0.00 2.52
335 336 2.171448 ACAAACTCTGAGCCACACTTCT 59.829 45.455 4.19 0.00 0.00 2.85
347 348 7.494625 TGTCTAACTTAAGGTTCACAAACTCTG 59.505 37.037 7.53 0.00 39.17 3.35
413 414 0.759060 GGGCCTGTTTGGTTTGAGGT 60.759 55.000 0.84 0.00 38.35 3.85
415 416 1.341080 ATGGGCCTGTTTGGTTTGAG 58.659 50.000 4.53 0.00 38.35 3.02
416 417 2.158385 ACTATGGGCCTGTTTGGTTTGA 60.158 45.455 4.53 0.00 38.35 2.69
433 436 5.497474 ACGGCCATTGAACTCTTAAACTAT 58.503 37.500 2.24 0.00 0.00 2.12
452 455 2.806244 TGCTCAACTTCTTTTAGACGGC 59.194 45.455 0.00 0.00 0.00 5.68
507 510 2.960384 TGCATGCCATAATCCAAGAAGG 59.040 45.455 16.68 0.00 39.47 3.46
508 511 4.866508 ATGCATGCCATAATCCAAGAAG 57.133 40.909 16.68 0.00 30.69 2.85
509 512 6.275494 CATATGCATGCCATAATCCAAGAA 57.725 37.500 16.68 0.00 39.71 2.52
510 513 5.907866 CATATGCATGCCATAATCCAAGA 57.092 39.130 16.68 0.00 39.71 3.02
597 600 3.700038 GCTAATTCTCTAGCCCGGCTATA 59.300 47.826 19.70 11.73 40.54 1.31
649 652 5.163834 GCATGTTGTAGGAATTTTTGCCATG 60.164 40.000 0.00 0.00 0.00 3.66
776 779 0.392461 TCCTGTCGTGGCCAATTAGC 60.392 55.000 7.24 0.00 0.00 3.09
779 782 1.747206 GCTATCCTGTCGTGGCCAATT 60.747 52.381 7.24 0.00 0.00 2.32
804 807 2.124695 GATTGGGTGAGGCGGGAC 60.125 66.667 0.00 0.00 0.00 4.46
860 863 6.561039 CGACGTGTGAAAATATCGAGTTATC 58.439 40.000 0.00 0.00 0.00 1.75
861 864 5.051907 GCGACGTGTGAAAATATCGAGTTAT 60.052 40.000 0.00 0.00 0.00 1.89
862 865 4.263677 GCGACGTGTGAAAATATCGAGTTA 59.736 41.667 0.00 0.00 0.00 2.24
863 866 3.060363 GCGACGTGTGAAAATATCGAGTT 59.940 43.478 0.00 0.00 0.00 3.01
864 867 2.597305 GCGACGTGTGAAAATATCGAGT 59.403 45.455 0.00 0.00 0.00 4.18
865 868 2.034842 GGCGACGTGTGAAAATATCGAG 60.035 50.000 0.00 0.00 0.00 4.04
866 869 1.921887 GGCGACGTGTGAAAATATCGA 59.078 47.619 0.00 0.00 0.00 3.59
867 870 1.924524 AGGCGACGTGTGAAAATATCG 59.075 47.619 0.00 0.00 0.00 2.92
981 984 2.940250 TTTGTTGCTGTGCTGCGCTG 62.940 55.000 14.92 14.80 35.36 5.18
982 985 2.079020 ATTTGTTGCTGTGCTGCGCT 62.079 50.000 14.92 0.00 35.36 5.92
983 986 1.662446 ATTTGTTGCTGTGCTGCGC 60.662 52.632 6.19 6.19 35.36 6.09
984 987 1.279527 CCATTTGTTGCTGTGCTGCG 61.280 55.000 0.00 0.00 35.36 5.18
985 988 1.562575 GCCATTTGTTGCTGTGCTGC 61.563 55.000 0.00 0.00 0.00 5.25
986 989 0.947180 GGCCATTTGTTGCTGTGCTG 60.947 55.000 0.00 0.00 0.00 4.41
1062 1066 0.754587 GCTACGTACCTAGGGCCTGT 60.755 60.000 18.53 9.27 0.00 4.00
1095 1099 1.062258 GCACATGGAAAACACGCATG 58.938 50.000 0.00 0.00 0.00 4.06
1096 1100 0.672889 TGCACATGGAAAACACGCAT 59.327 45.000 0.00 0.00 30.00 4.73
1099 1107 2.808244 ACTTTGCACATGGAAAACACG 58.192 42.857 0.00 0.00 35.00 4.49
1104 1112 1.599171 CGCGAACTTTGCACATGGAAA 60.599 47.619 0.00 0.00 34.25 3.13
1130 1138 2.032860 TAATCGGCTCAGCTCAGGCC 62.033 60.000 5.36 8.27 42.18 5.19
1475 1488 6.461788 GGGAGAAACTATGTGTAGCTTAGAGG 60.462 46.154 0.00 0.00 0.00 3.69
1497 1510 1.679680 GGATTACATGAGACGACGGGA 59.320 52.381 0.00 0.00 0.00 5.14
1498 1511 1.599667 CGGATTACATGAGACGACGGG 60.600 57.143 0.00 0.00 0.00 5.28
1499 1512 1.755161 CGGATTACATGAGACGACGG 58.245 55.000 0.00 0.00 0.00 4.79
1605 1618 0.743097 GGCAAGCAATCCATCTGACC 59.257 55.000 0.00 0.00 0.00 4.02
1615 1628 3.384532 CAAGGCGGGGCAAGCAAT 61.385 61.111 5.82 0.00 36.08 3.56
1646 1659 6.074888 GGATGTTTTATTCATTCAAATCGCGG 60.075 38.462 6.13 0.00 0.00 6.46
1742 1759 5.535753 AAGGAACTATATGGCCAAAATGC 57.464 39.130 10.96 0.00 38.49 3.56
1818 1836 4.082463 TGTTGCAGCGATCCGATATATGTA 60.082 41.667 0.00 0.00 0.00 2.29
1924 1942 1.683917 AGCTGACCATTAGAGTAGGCG 59.316 52.381 0.00 0.00 0.00 5.52
2147 2165 1.452833 GCCCACCTGATGAGCCTTC 60.453 63.158 0.00 0.00 0.00 3.46
2285 2303 2.494059 ACTTGGCATATCGTACCATGC 58.506 47.619 11.45 11.45 45.47 4.06
2293 2311 2.419673 TGCACAGAAACTTGGCATATCG 59.580 45.455 0.00 0.00 0.00 2.92
2344 2362 6.653273 TCTTTTCTGACTGCGATATCTTTG 57.347 37.500 0.34 0.00 0.00 2.77
2436 2456 8.063153 TCTACAGGAATACCATACTTACCAAGA 58.937 37.037 0.00 0.00 38.94 3.02
2447 2467 4.165950 TGTGCCATTCTACAGGAATACCAT 59.834 41.667 0.00 0.00 42.20 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.