Multiple sequence alignment - TraesCS3B01G344000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G344000 chr3B 100.000 3117 0 0 1 3117 553099369 553096253 0.000000e+00 5757.0
1 TraesCS3B01G344000 chr3B 80.156 257 47 3 2663 2919 133428268 133428016 4.100000e-44 189.0
2 TraesCS3B01G344000 chr3B 90.083 121 11 1 2953 3072 61536210 61536330 4.160000e-34 156.0
3 TraesCS3B01G344000 chr3B 88.618 123 12 2 2956 3076 796312654 796312776 6.960000e-32 148.0
4 TraesCS3B01G344000 chr3D 91.164 1924 101 19 419 2285 423834259 423836170 0.000000e+00 2547.0
5 TraesCS3B01G344000 chr3D 89.956 687 47 5 2285 2957 423839098 423839776 0.000000e+00 867.0
6 TraesCS3B01G344000 chr3D 90.674 193 15 2 8 200 552884955 552885144 1.430000e-63 254.0
7 TraesCS3B01G344000 chr3D 81.215 181 12 13 1858 2017 423841384 423841563 3.260000e-25 126.0
8 TraesCS3B01G344000 chr3A 89.653 1527 58 31 419 1850 565462027 565460506 0.000000e+00 1853.0
9 TraesCS3B01G344000 chr1B 93.939 198 12 0 1 198 517504012 517504209 1.820000e-77 300.0
10 TraesCS3B01G344000 chr1B 92.746 193 14 0 1 193 363164903 363165095 2.370000e-71 279.0
11 TraesCS3B01G344000 chr1B 89.950 199 17 2 1 199 22056067 22056262 1.430000e-63 254.0
12 TraesCS3B01G344000 chr1B 81.203 133 18 6 292 418 304186813 304186682 1.980000e-17 100.0
13 TraesCS3B01G344000 chr7A 92.118 203 14 2 1 201 218257078 218256876 5.090000e-73 285.0
14 TraesCS3B01G344000 chr2B 93.651 189 12 0 5 193 183515047 183515235 1.830000e-72 283.0
15 TraesCS3B01G344000 chr2A 93.651 189 12 0 1 189 461025546 461025734 1.830000e-72 283.0
16 TraesCS3B01G344000 chr2A 88.095 126 13 2 2948 3072 137121479 137121355 6.960000e-32 148.0
17 TraesCS3B01G344000 chr2A 75.301 166 24 11 216 366 711030988 711031151 2.600000e-06 63.9
18 TraesCS3B01G344000 chr1A 91.919 198 16 0 1 198 51343046 51342849 8.510000e-71 278.0
19 TraesCS3B01G344000 chr1A 88.889 126 11 3 2949 3072 570133040 570133164 5.380000e-33 152.0
20 TraesCS3B01G344000 chr5A 89.062 192 18 1 5 196 439443742 439443930 5.200000e-58 235.0
21 TraesCS3B01G344000 chr5A 81.132 106 20 0 2852 2957 366765560 366765665 5.540000e-13 86.1
22 TraesCS3B01G344000 chr4B 90.164 122 11 1 2953 3073 471336235 471336356 1.160000e-34 158.0
23 TraesCS3B01G344000 chr4B 90.678 118 10 1 2956 3072 422217419 422217536 4.160000e-34 156.0
24 TraesCS3B01G344000 chr6B 89.344 122 12 1 2953 3073 343032970 343032849 5.380000e-33 152.0
25 TraesCS3B01G344000 chr2D 88.800 125 12 2 2953 3076 572692615 572692738 5.380000e-33 152.0
26 TraesCS3B01G344000 chr7D 88.189 127 13 2 2937 3063 443163209 443163333 1.940000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G344000 chr3B 553096253 553099369 3116 True 5757 5757 100.000 1 3117 1 chr3B.!!$R2 3116
1 TraesCS3B01G344000 chr3D 423834259 423841563 7304 False 1180 2547 87.445 419 2957 3 chr3D.!!$F2 2538
2 TraesCS3B01G344000 chr3A 565460506 565462027 1521 True 1853 1853 89.653 419 1850 1 chr3A.!!$R1 1431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.029567 GTAGCCAGTGATCCGAGACG 59.970 60.0 0.00 0.0 0.0 4.18 F
362 363 0.110823 GACGCGCAAAAACTCACGAT 60.111 50.0 5.73 0.0 0.0 3.73 F
363 364 0.306533 ACGCGCAAAAACTCACGATT 59.693 45.0 5.73 0.0 0.0 3.34 F
440 441 0.390866 CCATCTCGCTGTTCTGTGCT 60.391 55.0 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 1268 0.179134 ATGCGCCTCAAGTACTCGTC 60.179 55.0 4.18 0.00 0.00 4.20 R
1421 1513 0.591170 ATTTGCAGTTCAACGACCGG 59.409 50.0 0.00 0.00 33.73 5.28 R
2049 2147 1.091771 ACGCTTCATTGGATCCTGCG 61.092 55.0 14.23 18.84 46.02 5.18 R
2313 5343 1.287425 GATCGGTTCAAGTTAGGCCG 58.713 55.0 0.00 0.00 43.32 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.759445 TCTAGCAAGTGGAGATGGAGC 59.241 52.381 0.00 0.00 0.00 4.70
21 22 0.461548 TAGCAAGTGGAGATGGAGCG 59.538 55.000 0.00 0.00 0.00 5.03
22 23 1.817099 GCAAGTGGAGATGGAGCGG 60.817 63.158 0.00 0.00 0.00 5.52
23 24 1.153289 CAAGTGGAGATGGAGCGGG 60.153 63.158 0.00 0.00 0.00 6.13
24 25 1.306141 AAGTGGAGATGGAGCGGGA 60.306 57.895 0.00 0.00 0.00 5.14
25 26 0.909610 AAGTGGAGATGGAGCGGGAA 60.910 55.000 0.00 0.00 0.00 3.97
26 27 1.144936 GTGGAGATGGAGCGGGAAG 59.855 63.158 0.00 0.00 0.00 3.46
27 28 2.066393 TGGAGATGGAGCGGGAAGG 61.066 63.158 0.00 0.00 0.00 3.46
28 29 2.812619 GGAGATGGAGCGGGAAGGG 61.813 68.421 0.00 0.00 0.00 3.95
29 30 2.041265 AGATGGAGCGGGAAGGGT 59.959 61.111 0.00 0.00 0.00 4.34
30 31 2.190578 GATGGAGCGGGAAGGGTG 59.809 66.667 0.00 0.00 0.00 4.61
31 32 3.406595 GATGGAGCGGGAAGGGTGG 62.407 68.421 0.00 0.00 0.00 4.61
32 33 4.974438 TGGAGCGGGAAGGGTGGT 62.974 66.667 0.00 0.00 0.00 4.16
33 34 4.097361 GGAGCGGGAAGGGTGGTC 62.097 72.222 0.00 0.00 0.00 4.02
34 35 4.452733 GAGCGGGAAGGGTGGTCG 62.453 72.222 0.00 0.00 0.00 4.79
37 38 4.760047 CGGGAAGGGTGGTCGCAG 62.760 72.222 0.00 0.00 0.00 5.18
103 104 3.231298 CCCTTAGGCTTCCTCCGG 58.769 66.667 0.00 0.00 34.61 5.14
104 105 1.382695 CCCTTAGGCTTCCTCCGGA 60.383 63.158 2.93 2.93 34.61 5.14
105 106 1.403687 CCCTTAGGCTTCCTCCGGAG 61.404 65.000 25.36 25.36 34.61 4.63
106 107 0.397254 CCTTAGGCTTCCTCCGGAGA 60.397 60.000 33.39 15.91 34.61 3.71
107 108 0.747852 CTTAGGCTTCCTCCGGAGAC 59.252 60.000 33.39 17.77 34.61 3.36
108 109 1.035932 TTAGGCTTCCTCCGGAGACG 61.036 60.000 33.39 19.78 44.37 4.18
119 120 3.285371 GGAGACGGCGAGAAAGGA 58.715 61.111 16.62 0.00 0.00 3.36
120 121 1.817209 GGAGACGGCGAGAAAGGAT 59.183 57.895 16.62 0.00 0.00 3.24
121 122 0.175989 GGAGACGGCGAGAAAGGATT 59.824 55.000 16.62 0.00 0.00 3.01
122 123 1.281899 GAGACGGCGAGAAAGGATTG 58.718 55.000 16.62 0.00 0.00 2.67
123 124 0.108138 AGACGGCGAGAAAGGATTGG 60.108 55.000 16.62 0.00 0.00 3.16
124 125 1.078426 ACGGCGAGAAAGGATTGGG 60.078 57.895 16.62 0.00 0.00 4.12
125 126 2.472909 CGGCGAGAAAGGATTGGGC 61.473 63.158 0.00 0.00 0.00 5.36
126 127 2.472909 GGCGAGAAAGGATTGGGCG 61.473 63.158 0.00 0.00 0.00 6.13
127 128 2.472909 GCGAGAAAGGATTGGGCGG 61.473 63.158 0.00 0.00 0.00 6.13
128 129 2.472909 CGAGAAAGGATTGGGCGGC 61.473 63.158 0.00 0.00 0.00 6.53
129 130 1.378514 GAGAAAGGATTGGGCGGCA 60.379 57.895 12.47 0.00 0.00 5.69
130 131 1.657751 GAGAAAGGATTGGGCGGCAC 61.658 60.000 12.47 0.00 0.00 5.01
145 146 3.726517 CACGGTTGCGCCCTCTTG 61.727 66.667 4.18 0.00 0.00 3.02
146 147 4.250305 ACGGTTGCGCCCTCTTGT 62.250 61.111 4.18 0.00 0.00 3.16
147 148 2.978010 CGGTTGCGCCCTCTTGTT 60.978 61.111 4.18 0.00 0.00 2.83
148 149 2.644992 GGTTGCGCCCTCTTGTTG 59.355 61.111 4.18 0.00 0.00 3.33
149 150 2.644992 GTTGCGCCCTCTTGTTGG 59.355 61.111 4.18 0.00 0.00 3.77
150 151 3.294493 TTGCGCCCTCTTGTTGGC 61.294 61.111 4.18 0.00 44.41 4.52
179 180 3.578272 CCTCCGGAGTCGCGAGAG 61.578 72.222 29.25 12.47 43.49 3.20
217 218 4.285851 CGAAGCTCGCCTTCCTTT 57.714 55.556 9.20 0.00 45.83 3.11
218 219 1.790387 CGAAGCTCGCCTTCCTTTG 59.210 57.895 9.20 0.00 45.83 2.77
219 220 0.951040 CGAAGCTCGCCTTCCTTTGT 60.951 55.000 9.20 0.00 45.83 2.83
220 221 1.239347 GAAGCTCGCCTTCCTTTGTT 58.761 50.000 0.00 0.00 43.39 2.83
221 222 1.609072 GAAGCTCGCCTTCCTTTGTTT 59.391 47.619 0.00 0.00 43.39 2.83
222 223 0.954452 AGCTCGCCTTCCTTTGTTTG 59.046 50.000 0.00 0.00 0.00 2.93
223 224 0.668535 GCTCGCCTTCCTTTGTTTGT 59.331 50.000 0.00 0.00 0.00 2.83
224 225 1.600413 GCTCGCCTTCCTTTGTTTGTG 60.600 52.381 0.00 0.00 0.00 3.33
225 226 1.676006 CTCGCCTTCCTTTGTTTGTGT 59.324 47.619 0.00 0.00 0.00 3.72
226 227 2.096248 TCGCCTTCCTTTGTTTGTGTT 58.904 42.857 0.00 0.00 0.00 3.32
227 228 2.494073 TCGCCTTCCTTTGTTTGTGTTT 59.506 40.909 0.00 0.00 0.00 2.83
228 229 2.602660 CGCCTTCCTTTGTTTGTGTTTG 59.397 45.455 0.00 0.00 0.00 2.93
229 230 3.674682 CGCCTTCCTTTGTTTGTGTTTGA 60.675 43.478 0.00 0.00 0.00 2.69
230 231 4.441792 GCCTTCCTTTGTTTGTGTTTGAT 58.558 39.130 0.00 0.00 0.00 2.57
231 232 4.507756 GCCTTCCTTTGTTTGTGTTTGATC 59.492 41.667 0.00 0.00 0.00 2.92
232 233 5.682212 GCCTTCCTTTGTTTGTGTTTGATCT 60.682 40.000 0.00 0.00 0.00 2.75
233 234 5.979517 CCTTCCTTTGTTTGTGTTTGATCTC 59.020 40.000 0.00 0.00 0.00 2.75
234 235 5.514274 TCCTTTGTTTGTGTTTGATCTCC 57.486 39.130 0.00 0.00 0.00 3.71
235 236 5.200483 TCCTTTGTTTGTGTTTGATCTCCT 58.800 37.500 0.00 0.00 0.00 3.69
236 237 5.656416 TCCTTTGTTTGTGTTTGATCTCCTT 59.344 36.000 0.00 0.00 0.00 3.36
237 238 5.750067 CCTTTGTTTGTGTTTGATCTCCTTG 59.250 40.000 0.00 0.00 0.00 3.61
238 239 6.405731 CCTTTGTTTGTGTTTGATCTCCTTGA 60.406 38.462 0.00 0.00 0.00 3.02
239 240 6.713762 TTGTTTGTGTTTGATCTCCTTGAT 57.286 33.333 0.00 0.00 38.27 2.57
240 241 6.713762 TGTTTGTGTTTGATCTCCTTGATT 57.286 33.333 0.00 0.00 35.14 2.57
241 242 7.111247 TGTTTGTGTTTGATCTCCTTGATTT 57.889 32.000 0.00 0.00 35.14 2.17
242 243 7.555087 TGTTTGTGTTTGATCTCCTTGATTTT 58.445 30.769 0.00 0.00 35.14 1.82
243 244 7.492020 TGTTTGTGTTTGATCTCCTTGATTTTG 59.508 33.333 0.00 0.00 35.14 2.44
244 245 6.713762 TGTGTTTGATCTCCTTGATTTTGT 57.286 33.333 0.00 0.00 35.14 2.83
245 246 7.111247 TGTGTTTGATCTCCTTGATTTTGTT 57.889 32.000 0.00 0.00 35.14 2.83
246 247 7.555087 TGTGTTTGATCTCCTTGATTTTGTTT 58.445 30.769 0.00 0.00 35.14 2.83
247 248 7.492020 TGTGTTTGATCTCCTTGATTTTGTTTG 59.508 33.333 0.00 0.00 35.14 2.93
248 249 7.706179 GTGTTTGATCTCCTTGATTTTGTTTGA 59.294 33.333 0.00 0.00 35.14 2.69
249 250 8.256605 TGTTTGATCTCCTTGATTTTGTTTGAA 58.743 29.630 0.00 0.00 35.14 2.69
250 251 9.264719 GTTTGATCTCCTTGATTTTGTTTGAAT 57.735 29.630 0.00 0.00 35.14 2.57
251 252 9.835389 TTTGATCTCCTTGATTTTGTTTGAATT 57.165 25.926 0.00 0.00 35.14 2.17
252 253 8.821147 TGATCTCCTTGATTTTGTTTGAATTG 57.179 30.769 0.00 0.00 35.14 2.32
253 254 7.385752 TGATCTCCTTGATTTTGTTTGAATTGC 59.614 33.333 0.00 0.00 35.14 3.56
254 255 6.580788 TCTCCTTGATTTTGTTTGAATTGCA 58.419 32.000 0.00 0.00 0.00 4.08
255 256 7.218614 TCTCCTTGATTTTGTTTGAATTGCAT 58.781 30.769 0.00 0.00 0.00 3.96
256 257 8.366401 TCTCCTTGATTTTGTTTGAATTGCATA 58.634 29.630 0.00 0.00 0.00 3.14
257 258 9.158233 CTCCTTGATTTTGTTTGAATTGCATAT 57.842 29.630 0.00 0.00 0.00 1.78
258 259 8.937884 TCCTTGATTTTGTTTGAATTGCATATG 58.062 29.630 0.00 0.00 0.00 1.78
259 260 8.723311 CCTTGATTTTGTTTGAATTGCATATGT 58.277 29.630 4.29 0.00 0.00 2.29
261 262 9.880064 TTGATTTTGTTTGAATTGCATATGTTG 57.120 25.926 4.29 0.00 0.00 3.33
262 263 9.053840 TGATTTTGTTTGAATTGCATATGTTGT 57.946 25.926 4.29 0.00 0.00 3.32
263 264 9.881529 GATTTTGTTTGAATTGCATATGTTGTT 57.118 25.926 4.29 0.00 0.00 2.83
265 266 9.499585 TTTTGTTTGAATTGCATATGTTGTTTG 57.500 25.926 4.29 0.00 0.00 2.93
266 267 7.783090 TGTTTGAATTGCATATGTTGTTTGT 57.217 28.000 4.29 0.00 0.00 2.83
267 268 7.628235 TGTTTGAATTGCATATGTTGTTTGTG 58.372 30.769 4.29 0.00 0.00 3.33
268 269 5.842619 TGAATTGCATATGTTGTTTGTGC 57.157 34.783 4.29 0.00 36.39 4.57
269 270 5.539979 TGAATTGCATATGTTGTTTGTGCT 58.460 33.333 4.29 0.00 36.78 4.40
270 271 5.405873 TGAATTGCATATGTTGTTTGTGCTG 59.594 36.000 4.29 0.00 36.78 4.41
271 272 4.581077 TTGCATATGTTGTTTGTGCTGA 57.419 36.364 4.29 0.00 36.78 4.26
272 273 4.163458 TGCATATGTTGTTTGTGCTGAG 57.837 40.909 4.29 0.00 36.78 3.35
273 274 2.919229 GCATATGTTGTTTGTGCTGAGC 59.081 45.455 4.29 0.00 33.25 4.26
274 275 2.967459 TATGTTGTTTGTGCTGAGCG 57.033 45.000 0.00 0.00 0.00 5.03
275 276 0.318107 ATGTTGTTTGTGCTGAGCGC 60.318 50.000 11.70 11.70 39.75 5.92
283 284 2.901339 TGCTGAGCGCACTTGCAA 60.901 55.556 18.93 0.00 45.47 4.08
284 285 2.263021 TGCTGAGCGCACTTGCAAT 61.263 52.632 18.93 0.00 45.47 3.56
285 286 1.080974 GCTGAGCGCACTTGCAATT 60.081 52.632 11.47 0.00 42.21 2.32
286 287 0.665369 GCTGAGCGCACTTGCAATTT 60.665 50.000 11.47 0.00 42.21 1.82
287 288 1.774639 CTGAGCGCACTTGCAATTTT 58.225 45.000 11.47 0.00 42.21 1.82
288 289 2.129607 CTGAGCGCACTTGCAATTTTT 58.870 42.857 11.47 0.00 42.21 1.94
289 290 1.859703 TGAGCGCACTTGCAATTTTTG 59.140 42.857 11.47 0.00 42.21 2.44
298 299 3.565050 CAATTTTTGCAGCGGCCC 58.435 55.556 6.32 0.00 40.13 5.80
299 300 2.048316 AATTTTTGCAGCGGCCCG 60.048 55.556 6.32 0.00 40.13 6.13
310 311 4.578898 CGGCCCGCGTGCACTATA 62.579 66.667 17.00 0.00 0.00 1.31
311 312 2.030562 GGCCCGCGTGCACTATAT 59.969 61.111 17.00 0.00 0.00 0.86
312 313 1.597027 GGCCCGCGTGCACTATATT 60.597 57.895 17.00 0.00 0.00 1.28
313 314 1.164041 GGCCCGCGTGCACTATATTT 61.164 55.000 17.00 0.00 0.00 1.40
314 315 0.661020 GCCCGCGTGCACTATATTTT 59.339 50.000 16.19 0.00 0.00 1.82
315 316 1.596954 GCCCGCGTGCACTATATTTTG 60.597 52.381 16.19 0.00 0.00 2.44
316 317 1.596954 CCCGCGTGCACTATATTTTGC 60.597 52.381 16.19 7.15 39.33 3.68
317 318 1.063321 CCGCGTGCACTATATTTTGCA 59.937 47.619 16.19 6.79 46.43 4.08
322 323 1.065401 TGCACTATATTTTGCAGCGGC 59.935 47.619 0.31 0.31 43.79 6.53
323 324 1.600413 GCACTATATTTTGCAGCGGCC 60.600 52.381 6.32 0.00 40.13 6.13
324 325 0.944386 ACTATATTTTGCAGCGGCCG 59.056 50.000 24.05 24.05 40.13 6.13
325 326 0.385974 CTATATTTTGCAGCGGCCGC 60.386 55.000 42.34 42.34 40.13 6.53
341 342 4.427394 GCTGTAGCCAGTGATCCG 57.573 61.111 0.00 0.00 41.02 4.18
342 343 1.816537 GCTGTAGCCAGTGATCCGA 59.183 57.895 0.00 0.00 41.02 4.55
343 344 0.249238 GCTGTAGCCAGTGATCCGAG 60.249 60.000 0.00 0.00 41.02 4.63
344 345 1.393603 CTGTAGCCAGTGATCCGAGA 58.606 55.000 0.00 0.00 33.80 4.04
345 346 1.066303 CTGTAGCCAGTGATCCGAGAC 59.934 57.143 0.00 0.00 33.80 3.36
346 347 0.029567 GTAGCCAGTGATCCGAGACG 59.970 60.000 0.00 0.00 0.00 4.18
347 348 1.725557 TAGCCAGTGATCCGAGACGC 61.726 60.000 0.00 0.00 0.00 5.19
348 349 2.278206 CCAGTGATCCGAGACGCG 60.278 66.667 3.53 3.53 40.47 6.01
349 350 2.951745 CAGTGATCCGAGACGCGC 60.952 66.667 5.73 0.00 39.11 6.86
350 351 3.440415 AGTGATCCGAGACGCGCA 61.440 61.111 5.73 0.00 39.11 6.09
351 352 2.506217 GTGATCCGAGACGCGCAA 60.506 61.111 5.73 0.00 39.11 4.85
352 353 2.092291 GTGATCCGAGACGCGCAAA 61.092 57.895 5.73 0.00 39.11 3.68
353 354 1.373622 TGATCCGAGACGCGCAAAA 60.374 52.632 5.73 0.00 39.11 2.44
354 355 0.946700 TGATCCGAGACGCGCAAAAA 60.947 50.000 5.73 0.00 39.11 1.94
355 356 0.518559 GATCCGAGACGCGCAAAAAC 60.519 55.000 5.73 0.00 39.11 2.43
356 357 0.949105 ATCCGAGACGCGCAAAAACT 60.949 50.000 5.73 0.00 39.11 2.66
357 358 1.154654 CCGAGACGCGCAAAAACTC 60.155 57.895 5.73 7.18 39.11 3.01
358 359 1.562691 CGAGACGCGCAAAAACTCA 59.437 52.632 5.73 0.00 0.00 3.41
359 360 0.718220 CGAGACGCGCAAAAACTCAC 60.718 55.000 5.73 0.00 0.00 3.51
360 361 0.718220 GAGACGCGCAAAAACTCACG 60.718 55.000 5.73 0.00 0.00 4.35
361 362 1.149361 AGACGCGCAAAAACTCACGA 61.149 50.000 5.73 0.00 0.00 4.35
362 363 0.110823 GACGCGCAAAAACTCACGAT 60.111 50.000 5.73 0.00 0.00 3.73
363 364 0.306533 ACGCGCAAAAACTCACGATT 59.693 45.000 5.73 0.00 0.00 3.34
364 365 0.967803 CGCGCAAAAACTCACGATTC 59.032 50.000 8.75 0.00 0.00 2.52
365 366 1.327507 GCGCAAAAACTCACGATTCC 58.672 50.000 0.30 0.00 0.00 3.01
366 367 1.334599 GCGCAAAAACTCACGATTCCA 60.335 47.619 0.30 0.00 0.00 3.53
367 368 2.856720 GCGCAAAAACTCACGATTCCAA 60.857 45.455 0.30 0.00 0.00 3.53
368 369 3.564511 CGCAAAAACTCACGATTCCAAT 58.435 40.909 0.00 0.00 0.00 3.16
369 370 3.361644 CGCAAAAACTCACGATTCCAATG 59.638 43.478 0.00 0.00 0.00 2.82
370 371 4.298332 GCAAAAACTCACGATTCCAATGT 58.702 39.130 0.00 0.00 0.00 2.71
371 372 4.744631 GCAAAAACTCACGATTCCAATGTT 59.255 37.500 0.00 0.00 0.00 2.71
372 373 5.332506 GCAAAAACTCACGATTCCAATGTTG 60.333 40.000 0.00 0.00 0.00 3.33
373 374 5.514274 AAAACTCACGATTCCAATGTTGT 57.486 34.783 0.00 0.00 0.00 3.32
374 375 4.749245 AACTCACGATTCCAATGTTGTC 57.251 40.909 0.00 0.00 0.00 3.18
375 376 3.738982 ACTCACGATTCCAATGTTGTCA 58.261 40.909 0.00 0.00 0.00 3.58
376 377 4.133820 ACTCACGATTCCAATGTTGTCAA 58.866 39.130 0.00 0.00 0.00 3.18
377 378 4.578516 ACTCACGATTCCAATGTTGTCAAA 59.421 37.500 0.00 0.00 0.00 2.69
378 379 4.854399 TCACGATTCCAATGTTGTCAAAC 58.146 39.130 0.00 0.00 36.78 2.93
379 380 4.578516 TCACGATTCCAATGTTGTCAAACT 59.421 37.500 0.00 0.00 37.19 2.66
380 381 5.067153 TCACGATTCCAATGTTGTCAAACTT 59.933 36.000 0.00 0.00 37.19 2.66
381 382 5.748152 CACGATTCCAATGTTGTCAAACTTT 59.252 36.000 0.00 0.00 37.19 2.66
382 383 6.255453 CACGATTCCAATGTTGTCAAACTTTT 59.745 34.615 0.00 0.00 37.19 2.27
383 384 6.816140 ACGATTCCAATGTTGTCAAACTTTTT 59.184 30.769 0.00 0.00 37.19 1.94
406 407 3.030308 CGTCGCGTGACTGCTGTT 61.030 61.111 25.28 0.00 43.21 3.16
407 408 2.546321 GTCGCGTGACTGCTGTTG 59.454 61.111 21.55 0.00 42.08 3.33
408 409 2.661537 TCGCGTGACTGCTGTTGG 60.662 61.111 5.77 0.00 0.00 3.77
409 410 2.661537 CGCGTGACTGCTGTTGGA 60.662 61.111 0.00 0.00 0.00 3.53
410 411 2.661566 CGCGTGACTGCTGTTGGAG 61.662 63.158 0.00 0.00 37.67 3.86
411 412 1.300931 GCGTGACTGCTGTTGGAGA 60.301 57.895 0.00 0.00 35.49 3.71
412 413 0.671781 GCGTGACTGCTGTTGGAGAT 60.672 55.000 0.00 0.00 35.49 2.75
413 414 1.073964 CGTGACTGCTGTTGGAGATG 58.926 55.000 0.00 0.00 35.49 2.90
414 415 0.801251 GTGACTGCTGTTGGAGATGC 59.199 55.000 0.00 0.00 35.49 3.91
415 416 0.689055 TGACTGCTGTTGGAGATGCT 59.311 50.000 0.00 0.00 35.49 3.79
416 417 1.338484 TGACTGCTGTTGGAGATGCTC 60.338 52.381 0.00 0.00 35.49 4.26
417 418 0.982704 ACTGCTGTTGGAGATGCTCT 59.017 50.000 0.00 0.00 35.49 4.09
440 441 0.390866 CCATCTCGCTGTTCTGTGCT 60.391 55.000 0.00 0.00 0.00 4.40
461 462 1.522092 CTGCAGCTTCCGGGATACA 59.478 57.895 0.00 0.00 39.74 2.29
462 463 0.531532 CTGCAGCTTCCGGGATACAG 60.532 60.000 0.00 0.00 39.74 2.74
463 464 0.975556 TGCAGCTTCCGGGATACAGA 60.976 55.000 0.00 0.00 39.74 3.41
583 595 3.339141 TCCTCTATCTGACCGATCGATG 58.661 50.000 18.66 2.80 33.48 3.84
584 596 3.078097 CCTCTATCTGACCGATCGATGT 58.922 50.000 18.66 6.72 33.48 3.06
587 599 3.883489 TCTATCTGACCGATCGATGTGTT 59.117 43.478 18.66 0.00 33.48 3.32
593 610 2.603560 GACCGATCGATGTGTTCTTTCC 59.396 50.000 18.66 0.00 0.00 3.13
623 640 4.394712 GGGCAGAGGACACCCGTG 62.395 72.222 0.00 0.00 37.58 4.94
674 712 1.014352 CGGGCCGTCTTTCTAAATGG 58.986 55.000 19.97 0.00 0.00 3.16
705 758 0.613260 ACCGTACACACCATGCAGAT 59.387 50.000 0.00 0.00 0.00 2.90
750 807 2.793232 GCTGCTTCTGCTTTCACTTTTG 59.207 45.455 0.00 0.00 40.48 2.44
786 843 0.467290 AACAGTGTGCCCGGTCAAAT 60.467 50.000 0.00 0.00 0.00 2.32
821 878 1.336056 GCGTGACGACCTTTCTTCTCT 60.336 52.381 10.10 0.00 0.00 3.10
823 880 2.726760 CGTGACGACCTTTCTTCTCTTG 59.273 50.000 0.00 0.00 0.00 3.02
824 881 3.718815 GTGACGACCTTTCTTCTCTTGT 58.281 45.455 0.00 0.00 0.00 3.16
831 892 4.967036 ACCTTTCTTCTCTTGTTCTCCTG 58.033 43.478 0.00 0.00 0.00 3.86
858 919 1.525077 TTTTTCTGTCGTGCCGCCT 60.525 52.632 0.00 0.00 0.00 5.52
860 921 2.377628 TTTTCTGTCGTGCCGCCTCT 62.378 55.000 0.00 0.00 0.00 3.69
955 1016 2.828128 GCAAGCATAGCCTCGGCAC 61.828 63.158 11.02 0.00 44.88 5.01
1003 1064 1.067295 ACTTGGTCCTTGAGCCATGA 58.933 50.000 0.00 0.00 34.37 3.07
1005 1066 2.042162 ACTTGGTCCTTGAGCCATGAAT 59.958 45.455 0.00 0.00 34.37 2.57
1051 1112 4.129737 ACGACGACGGCCTGATGG 62.130 66.667 12.58 0.00 44.46 3.51
1207 1268 3.605749 AACGTCCACCGGAGCATGG 62.606 63.158 9.46 5.20 42.24 3.66
1242 1309 1.466856 GCATGAATGGCCTTGAGTCA 58.533 50.000 3.32 0.00 0.00 3.41
1264 1331 2.176202 TCCCCAGGGGACATCTTCGA 62.176 60.000 25.51 0.00 46.17 3.71
1265 1332 2.296920 CCCAGGGGACATCTTCGAA 58.703 57.895 0.00 0.00 37.50 3.71
1266 1333 0.839946 CCCAGGGGACATCTTCGAAT 59.160 55.000 0.00 0.00 37.50 3.34
1428 1520 0.606096 TGATCACATCAACCGGTCGT 59.394 50.000 8.04 0.00 36.11 4.34
1455 1553 1.664016 GCAAATGCAAGTGACACGAGG 60.664 52.381 0.00 0.00 41.59 4.63
1469 1567 1.923204 CACGAGGATTTCTCTTCTGCG 59.077 52.381 0.00 0.00 40.30 5.18
1496 1594 2.620112 CGCAGGGTGCCAAGAACTG 61.620 63.158 0.00 0.00 41.12 3.16
1556 1654 3.717294 GAGGAAGGGCCGGCTTGA 61.717 66.667 28.56 0.00 43.43 3.02
1781 1879 3.998672 GGTCGCGGTGGAGTCCAA 61.999 66.667 15.09 0.00 34.18 3.53
1808 1906 4.211986 GCCGGAAAGCGTAATCCA 57.788 55.556 5.05 0.00 35.34 3.41
1854 1952 1.675310 CCATCAGTGCCCGAAAGCA 60.675 57.895 0.00 0.00 41.46 3.91
1987 2085 3.248266 GTGCGTGTAGGTATCTTCGTTT 58.752 45.455 0.00 0.00 0.00 3.60
1992 2090 3.864003 GTGTAGGTATCTTCGTTTGAGGC 59.136 47.826 0.00 0.00 0.00 4.70
1993 2091 3.512329 TGTAGGTATCTTCGTTTGAGGCA 59.488 43.478 0.00 0.00 0.00 4.75
2023 2121 5.036737 CGAATAACAAATGCCTTGATGGAC 58.963 41.667 2.85 0.00 38.50 4.02
2049 2147 1.066152 GGAAATCAAATCCTGCCGCTC 59.934 52.381 0.00 0.00 33.98 5.03
2060 2158 4.838152 GCCGCTCGCAGGATCCAA 62.838 66.667 15.82 0.00 37.47 3.53
2070 2168 1.599542 GCAGGATCCAATGAAGCGTAC 59.400 52.381 15.82 0.00 0.00 3.67
2104 2202 5.250200 AGTTGTCAAGTTGTAAGTGGTGAA 58.750 37.500 2.11 0.00 0.00 3.18
2107 2205 4.634004 TGTCAAGTTGTAAGTGGTGAACTG 59.366 41.667 2.11 0.00 39.81 3.16
2117 2215 4.000331 AGTGGTGAACTGATGAGTTGAG 58.000 45.455 1.00 0.00 42.80 3.02
2118 2216 3.643320 AGTGGTGAACTGATGAGTTGAGA 59.357 43.478 1.00 0.00 42.80 3.27
2119 2217 3.993081 GTGGTGAACTGATGAGTTGAGAG 59.007 47.826 1.00 0.00 42.80 3.20
2120 2218 3.007290 TGGTGAACTGATGAGTTGAGAGG 59.993 47.826 1.00 0.00 42.80 3.69
2128 2226 6.010850 ACTGATGAGTTGAGAGGTGTACTAA 58.989 40.000 0.00 0.00 0.00 2.24
2135 2233 9.256228 TGAGTTGAGAGGTGTACTAAGAAATAT 57.744 33.333 0.00 0.00 0.00 1.28
2175 2275 5.583854 CACTATATGCCCTATGATGTGAAGC 59.416 44.000 0.00 0.00 0.00 3.86
2215 2317 7.451566 AGAGGTGTACAATTTAAGATTTTGCCT 59.548 33.333 0.00 0.00 0.00 4.75
2218 2320 8.034804 GGTGTACAATTTAAGATTTTGCCTCAT 58.965 33.333 0.00 0.00 0.00 2.90
2231 2333 6.567687 TTTTGCCTCATGATTTTAACTCGA 57.432 33.333 0.00 0.00 0.00 4.04
2232 2334 5.545658 TTGCCTCATGATTTTAACTCGAC 57.454 39.130 0.00 0.00 0.00 4.20
2236 2338 5.504665 GCCTCATGATTTTAACTCGACCATG 60.505 44.000 0.00 0.00 33.32 3.66
2241 2343 5.556915 TGATTTTAACTCGACCATGGTCTT 58.443 37.500 35.84 26.91 42.54 3.01
2243 2345 4.610605 TTTAACTCGACCATGGTCTTGA 57.389 40.909 35.84 26.65 42.54 3.02
2247 2349 1.482182 CTCGACCATGGTCTTGATGGA 59.518 52.381 35.84 24.79 42.81 3.41
2260 2362 3.333381 TCTTGATGGATCCCTTTGGTCAA 59.667 43.478 9.90 8.97 0.00 3.18
2270 2372 2.165030 CCCTTTGGTCAATGCATGAGAC 59.835 50.000 19.18 19.18 39.19 3.36
2303 5333 4.397103 GTCATTGCATGAGATTTGACCAGA 59.603 41.667 0.00 0.00 40.53 3.86
2326 5356 1.740296 GCGCTCGGCCTAACTTGAA 60.740 57.895 0.00 0.00 34.80 2.69
2328 5358 1.359459 CGCTCGGCCTAACTTGAACC 61.359 60.000 0.00 0.00 0.00 3.62
2329 5359 1.359459 GCTCGGCCTAACTTGAACCG 61.359 60.000 0.00 0.00 45.15 4.44
2331 5361 3.453559 CGGCCTAACTTGAACCGAT 57.546 52.632 0.00 0.00 46.71 4.18
2332 5362 1.287425 CGGCCTAACTTGAACCGATC 58.713 55.000 0.00 0.00 46.71 3.69
2333 5363 1.287425 GGCCTAACTTGAACCGATCG 58.713 55.000 8.51 8.51 0.00 3.69
2334 5364 1.287425 GCCTAACTTGAACCGATCGG 58.713 55.000 32.20 32.20 42.03 4.18
2361 5391 9.550406 TTCGGTTCTTCAAGTAATAAAGAAAGA 57.450 29.630 3.18 4.03 39.86 2.52
2368 5398 7.342318 TCAAGTAATAAAGAAAGACGGTTCG 57.658 36.000 0.00 0.00 32.50 3.95
2369 5399 6.366877 TCAAGTAATAAAGAAAGACGGTTCGG 59.633 38.462 0.00 0.00 32.50 4.30
2370 5400 6.029346 AGTAATAAAGAAAGACGGTTCGGA 57.971 37.500 0.00 0.00 32.50 4.55
2371 5401 6.098017 AGTAATAAAGAAAGACGGTTCGGAG 58.902 40.000 0.00 0.00 32.50 4.63
2372 5402 2.904697 AAAGAAAGACGGTTCGGAGT 57.095 45.000 0.00 0.00 32.50 3.85
2373 5403 5.649782 ATAAAGAAAGACGGTTCGGAGTA 57.350 39.130 0.00 0.00 32.50 2.59
2389 5419 6.803154 TCGGAGTAGTATATGTGATGACTG 57.197 41.667 0.00 0.00 0.00 3.51
2393 5423 6.490381 GGAGTAGTATATGTGATGACTGGTCA 59.510 42.308 5.87 5.87 44.59 4.02
2395 5425 5.798125 AGTATATGTGATGACTGGTCAGG 57.202 43.478 9.33 0.00 43.61 3.86
2415 5445 2.399448 GTACCCCACAAATGCAAAACG 58.601 47.619 0.00 0.00 0.00 3.60
2456 5486 1.515081 TTTGGCTCGGTTTCGGTTAG 58.485 50.000 0.00 0.00 36.95 2.34
2496 5526 6.349694 GGGAGGAACAAATCAAGAGTCAAATC 60.350 42.308 0.00 0.00 0.00 2.17
2497 5527 6.349694 GGAGGAACAAATCAAGAGTCAAATCC 60.350 42.308 0.00 0.00 0.00 3.01
2499 5529 6.432472 AGGAACAAATCAAGAGTCAAATCCTC 59.568 38.462 0.00 0.00 0.00 3.71
2505 5535 3.008330 CAAGAGTCAAATCCTCAGCCAG 58.992 50.000 0.00 0.00 0.00 4.85
2525 5555 3.435671 CAGAAACAATGGAGTAACCGACC 59.564 47.826 0.00 0.00 42.61 4.79
2535 5565 2.301009 GAGTAACCGACCCCTCAGAAAA 59.699 50.000 0.00 0.00 0.00 2.29
2596 5626 2.546368 CTCGGTTTTGGTTCATTCGACA 59.454 45.455 0.00 0.00 0.00 4.35
2600 5630 4.024725 CGGTTTTGGTTCATTCGACAGTTA 60.025 41.667 0.00 0.00 0.00 2.24
2602 5632 5.856455 GGTTTTGGTTCATTCGACAGTTATG 59.144 40.000 0.00 0.00 0.00 1.90
2617 5659 2.535485 TTATGTCGCTGCACCCCTGG 62.535 60.000 0.00 0.00 0.00 4.45
2638 5680 0.822121 GCAACTTCCCGTCCCAAACT 60.822 55.000 0.00 0.00 0.00 2.66
2639 5681 1.235724 CAACTTCCCGTCCCAAACTC 58.764 55.000 0.00 0.00 0.00 3.01
2677 5719 2.629656 GCAAGCCGCAAGATGGTGT 61.630 57.895 0.00 0.00 41.79 4.16
2702 5744 0.109551 CTTCTCTTCGAGTCTGCGCA 60.110 55.000 10.98 10.98 0.00 6.09
2746 5790 5.163447 CGAGATTGGGTAGAGTGTGGAAATA 60.163 44.000 0.00 0.00 0.00 1.40
2781 5825 4.047822 GCGTTGGACATCAATTGTTTCAA 58.952 39.130 5.13 0.13 39.18 2.69
2783 5827 5.559694 GTTGGACATCAATTGTTTCAACG 57.440 39.130 5.13 0.00 40.03 4.10
2791 5835 5.004922 TCAATTGTTTCAACGAAGCCTTT 57.995 34.783 5.13 0.00 0.00 3.11
2872 5916 5.647658 TCTGCCACGACAAATAAATGATCTT 59.352 36.000 0.00 0.00 0.00 2.40
2873 5917 5.639757 TGCCACGACAAATAAATGATCTTG 58.360 37.500 0.00 0.00 0.00 3.02
2880 5924 6.212888 ACAAATAAATGATCTTGTGGCCTC 57.787 37.500 3.32 0.00 31.00 4.70
2883 5927 2.029838 AATGATCTTGTGGCCTCGTC 57.970 50.000 3.32 0.00 0.00 4.20
2899 5943 3.063452 CCTCGTCGGTGATAATTTTGGTG 59.937 47.826 0.00 0.00 0.00 4.17
2955 5999 4.827789 TCCTATAGTCCAGCCTACCAAAT 58.172 43.478 0.00 0.00 0.00 2.32
2956 6000 5.972698 TCCTATAGTCCAGCCTACCAAATA 58.027 41.667 0.00 0.00 0.00 1.40
2957 6001 5.778750 TCCTATAGTCCAGCCTACCAAATAC 59.221 44.000 0.00 0.00 0.00 1.89
2958 6002 5.780793 CCTATAGTCCAGCCTACCAAATACT 59.219 44.000 0.00 0.00 0.00 2.12
2959 6003 5.810080 ATAGTCCAGCCTACCAAATACTC 57.190 43.478 0.00 0.00 0.00 2.59
2960 6004 2.772515 AGTCCAGCCTACCAAATACTCC 59.227 50.000 0.00 0.00 0.00 3.85
2961 6005 2.124411 TCCAGCCTACCAAATACTCCC 58.876 52.381 0.00 0.00 0.00 4.30
2962 6006 2.127708 CCAGCCTACCAAATACTCCCT 58.872 52.381 0.00 0.00 0.00 4.20
2963 6007 2.104963 CCAGCCTACCAAATACTCCCTC 59.895 54.545 0.00 0.00 0.00 4.30
2964 6008 2.104963 CAGCCTACCAAATACTCCCTCC 59.895 54.545 0.00 0.00 0.00 4.30
2965 6009 2.124411 GCCTACCAAATACTCCCTCCA 58.876 52.381 0.00 0.00 0.00 3.86
2966 6010 2.711547 GCCTACCAAATACTCCCTCCAT 59.288 50.000 0.00 0.00 0.00 3.41
2967 6011 3.244596 GCCTACCAAATACTCCCTCCATC 60.245 52.174 0.00 0.00 0.00 3.51
2968 6012 3.328050 CCTACCAAATACTCCCTCCATCC 59.672 52.174 0.00 0.00 0.00 3.51
2969 6013 2.858644 ACCAAATACTCCCTCCATCCA 58.141 47.619 0.00 0.00 0.00 3.41
2970 6014 3.197983 ACCAAATACTCCCTCCATCCAA 58.802 45.455 0.00 0.00 0.00 3.53
2971 6015 3.596046 ACCAAATACTCCCTCCATCCAAA 59.404 43.478 0.00 0.00 0.00 3.28
2972 6016 4.045334 ACCAAATACTCCCTCCATCCAAAA 59.955 41.667 0.00 0.00 0.00 2.44
2973 6017 5.022787 CCAAATACTCCCTCCATCCAAAAA 58.977 41.667 0.00 0.00 0.00 1.94
2974 6018 5.662657 CCAAATACTCCCTCCATCCAAAAAT 59.337 40.000 0.00 0.00 0.00 1.82
2975 6019 6.838612 CCAAATACTCCCTCCATCCAAAAATA 59.161 38.462 0.00 0.00 0.00 1.40
2976 6020 7.201911 CCAAATACTCCCTCCATCCAAAAATAC 60.202 40.741 0.00 0.00 0.00 1.89
2977 6021 6.848562 ATACTCCCTCCATCCAAAAATACT 57.151 37.500 0.00 0.00 0.00 2.12
2978 6022 5.536497 ACTCCCTCCATCCAAAAATACTT 57.464 39.130 0.00 0.00 0.00 2.24
2979 6023 5.264395 ACTCCCTCCATCCAAAAATACTTG 58.736 41.667 0.00 0.00 0.00 3.16
2980 6024 5.222337 ACTCCCTCCATCCAAAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
2981 6025 5.261216 TCCCTCCATCCAAAAATACTTGTC 58.739 41.667 0.00 0.00 0.00 3.18
2982 6026 4.096382 CCCTCCATCCAAAAATACTTGTCG 59.904 45.833 0.00 0.00 0.00 4.35
2983 6027 4.096382 CCTCCATCCAAAAATACTTGTCGG 59.904 45.833 0.00 0.00 0.00 4.79
2984 6028 4.912586 TCCATCCAAAAATACTTGTCGGA 58.087 39.130 0.00 0.00 0.00 4.55
2985 6029 5.505780 TCCATCCAAAAATACTTGTCGGAT 58.494 37.500 0.00 0.00 0.00 4.18
2986 6030 5.356751 TCCATCCAAAAATACTTGTCGGATG 59.643 40.000 8.26 8.26 0.00 3.51
2987 6031 5.356751 CCATCCAAAAATACTTGTCGGATGA 59.643 40.000 15.33 0.00 34.49 2.92
2988 6032 6.127758 CCATCCAAAAATACTTGTCGGATGAA 60.128 38.462 15.33 0.00 34.49 2.57
2989 6033 7.416664 CCATCCAAAAATACTTGTCGGATGAAT 60.417 37.037 15.33 0.00 34.49 2.57
2990 6034 6.851609 TCCAAAAATACTTGTCGGATGAATG 58.148 36.000 0.00 0.00 0.00 2.67
2991 6035 6.035843 CCAAAAATACTTGTCGGATGAATGG 58.964 40.000 0.00 0.00 0.00 3.16
2992 6036 6.127758 CCAAAAATACTTGTCGGATGAATGGA 60.128 38.462 0.00 0.00 0.00 3.41
2993 6037 7.416664 CCAAAAATACTTGTCGGATGAATGGAT 60.417 37.037 0.00 0.00 0.00 3.41
2994 6038 6.624352 AAATACTTGTCGGATGAATGGATG 57.376 37.500 0.00 0.00 0.00 3.51
2995 6039 3.634397 ACTTGTCGGATGAATGGATGT 57.366 42.857 0.00 0.00 0.00 3.06
2996 6040 4.753516 ACTTGTCGGATGAATGGATGTA 57.246 40.909 0.00 0.00 0.00 2.29
2997 6041 5.296151 ACTTGTCGGATGAATGGATGTAT 57.704 39.130 0.00 0.00 0.00 2.29
2998 6042 5.300752 ACTTGTCGGATGAATGGATGTATC 58.699 41.667 0.00 0.00 0.00 2.24
2999 6043 5.070981 ACTTGTCGGATGAATGGATGTATCT 59.929 40.000 0.00 0.00 0.00 1.98
3000 6044 6.267699 ACTTGTCGGATGAATGGATGTATCTA 59.732 38.462 0.00 0.00 0.00 1.98
3001 6045 6.272822 TGTCGGATGAATGGATGTATCTAG 57.727 41.667 0.00 0.00 0.00 2.43
3002 6046 6.010219 TGTCGGATGAATGGATGTATCTAGA 58.990 40.000 0.00 0.00 0.00 2.43
3003 6047 6.071896 TGTCGGATGAATGGATGTATCTAGAC 60.072 42.308 0.00 0.00 32.92 2.59
3004 6048 5.123979 TCGGATGAATGGATGTATCTAGACG 59.876 44.000 0.00 0.00 0.00 4.18
3005 6049 5.106118 CGGATGAATGGATGTATCTAGACGT 60.106 44.000 0.00 0.00 0.00 4.34
3006 6050 6.093633 CGGATGAATGGATGTATCTAGACGTA 59.906 42.308 0.00 0.00 0.00 3.57
3007 6051 7.201741 CGGATGAATGGATGTATCTAGACGTAT 60.202 40.741 0.00 0.00 0.00 3.06
3008 6052 8.470805 GGATGAATGGATGTATCTAGACGTATT 58.529 37.037 0.00 0.00 0.00 1.89
3009 6053 9.862371 GATGAATGGATGTATCTAGACGTATTT 57.138 33.333 0.00 0.00 0.00 1.40
3058 6102 8.758633 ATATATTTCTCCGACAAGTATTTCCG 57.241 34.615 0.00 0.00 0.00 4.30
3059 6103 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3060 6104 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3061 6105 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3062 6106 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3063 6107 1.403249 CCGACAAGTATTTCCGGACGT 60.403 52.381 1.83 0.00 42.49 4.34
3064 6108 1.652124 CGACAAGTATTTCCGGACGTG 59.348 52.381 1.83 4.29 0.00 4.49
3065 6109 1.997606 GACAAGTATTTCCGGACGTGG 59.002 52.381 1.83 0.00 30.45 4.94
3066 6110 1.345415 ACAAGTATTTCCGGACGTGGT 59.655 47.619 1.83 0.00 30.45 4.16
3067 6111 2.562298 ACAAGTATTTCCGGACGTGGTA 59.438 45.455 1.83 0.00 30.45 3.25
3068 6112 3.184541 CAAGTATTTCCGGACGTGGTAG 58.815 50.000 1.83 0.00 0.00 3.18
3094 6138 2.055579 AGGAGGGGAAGAAGAACGTTT 58.944 47.619 0.46 0.00 0.00 3.60
3108 6152 6.645415 AGAAGAACGTTTAGTTTCGACATCAT 59.355 34.615 0.46 0.00 44.35 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.759445 GCTCCATCTCCACTTGCTAGA 59.241 52.381 1.04 0.00 0.00 2.43
1 2 1.537776 CGCTCCATCTCCACTTGCTAG 60.538 57.143 0.00 0.00 0.00 3.42
2 3 0.461548 CGCTCCATCTCCACTTGCTA 59.538 55.000 0.00 0.00 0.00 3.49
3 4 1.220206 CGCTCCATCTCCACTTGCT 59.780 57.895 0.00 0.00 0.00 3.91
4 5 1.817099 CCGCTCCATCTCCACTTGC 60.817 63.158 0.00 0.00 0.00 4.01
5 6 1.153289 CCCGCTCCATCTCCACTTG 60.153 63.158 0.00 0.00 0.00 3.16
6 7 0.909610 TTCCCGCTCCATCTCCACTT 60.910 55.000 0.00 0.00 0.00 3.16
7 8 1.306141 TTCCCGCTCCATCTCCACT 60.306 57.895 0.00 0.00 0.00 4.00
8 9 1.144936 CTTCCCGCTCCATCTCCAC 59.855 63.158 0.00 0.00 0.00 4.02
9 10 2.066393 CCTTCCCGCTCCATCTCCA 61.066 63.158 0.00 0.00 0.00 3.86
10 11 2.812619 CCCTTCCCGCTCCATCTCC 61.813 68.421 0.00 0.00 0.00 3.71
11 12 2.066999 ACCCTTCCCGCTCCATCTC 61.067 63.158 0.00 0.00 0.00 2.75
12 13 2.041265 ACCCTTCCCGCTCCATCT 59.959 61.111 0.00 0.00 0.00 2.90
13 14 2.190578 CACCCTTCCCGCTCCATC 59.809 66.667 0.00 0.00 0.00 3.51
14 15 3.411517 CCACCCTTCCCGCTCCAT 61.412 66.667 0.00 0.00 0.00 3.41
15 16 4.974438 ACCACCCTTCCCGCTCCA 62.974 66.667 0.00 0.00 0.00 3.86
16 17 4.097361 GACCACCCTTCCCGCTCC 62.097 72.222 0.00 0.00 0.00 4.70
17 18 4.452733 CGACCACCCTTCCCGCTC 62.453 72.222 0.00 0.00 0.00 5.03
20 21 4.760047 CTGCGACCACCCTTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
101 102 2.005960 ATCCTTTCTCGCCGTCTCCG 62.006 60.000 0.00 0.00 0.00 4.63
102 103 0.175989 AATCCTTTCTCGCCGTCTCC 59.824 55.000 0.00 0.00 0.00 3.71
103 104 1.281899 CAATCCTTTCTCGCCGTCTC 58.718 55.000 0.00 0.00 0.00 3.36
104 105 0.108138 CCAATCCTTTCTCGCCGTCT 60.108 55.000 0.00 0.00 0.00 4.18
105 106 1.090052 CCCAATCCTTTCTCGCCGTC 61.090 60.000 0.00 0.00 0.00 4.79
106 107 1.078426 CCCAATCCTTTCTCGCCGT 60.078 57.895 0.00 0.00 0.00 5.68
107 108 2.472909 GCCCAATCCTTTCTCGCCG 61.473 63.158 0.00 0.00 0.00 6.46
108 109 2.472909 CGCCCAATCCTTTCTCGCC 61.473 63.158 0.00 0.00 0.00 5.54
109 110 2.472909 CCGCCCAATCCTTTCTCGC 61.473 63.158 0.00 0.00 0.00 5.03
110 111 2.472909 GCCGCCCAATCCTTTCTCG 61.473 63.158 0.00 0.00 0.00 4.04
111 112 1.378514 TGCCGCCCAATCCTTTCTC 60.379 57.895 0.00 0.00 0.00 2.87
112 113 1.678970 GTGCCGCCCAATCCTTTCT 60.679 57.895 0.00 0.00 0.00 2.52
113 114 2.885113 GTGCCGCCCAATCCTTTC 59.115 61.111 0.00 0.00 0.00 2.62
114 115 3.061848 CGTGCCGCCCAATCCTTT 61.062 61.111 0.00 0.00 0.00 3.11
118 119 4.114997 CAACCGTGCCGCCCAATC 62.115 66.667 0.00 0.00 0.00 2.67
128 129 3.726517 CAAGAGGGCGCAACCGTG 61.727 66.667 10.83 1.47 40.62 4.94
129 130 3.767630 AACAAGAGGGCGCAACCGT 62.768 57.895 10.83 0.00 40.62 4.83
130 131 2.978010 AACAAGAGGGCGCAACCG 60.978 61.111 10.83 0.00 40.62 4.44
131 132 2.644992 CAACAAGAGGGCGCAACC 59.355 61.111 10.83 1.02 37.93 3.77
132 133 2.644992 CCAACAAGAGGGCGCAAC 59.355 61.111 10.83 0.24 0.00 4.17
133 134 3.294493 GCCAACAAGAGGGCGCAA 61.294 61.111 10.83 0.00 40.93 4.85
163 164 4.244802 GCTCTCGCGACTCCGGAG 62.245 72.222 30.11 30.11 35.70 4.63
200 201 0.951040 ACAAAGGAAGGCGAGCTTCG 60.951 55.000 0.00 0.00 43.89 3.79
201 202 1.239347 AACAAAGGAAGGCGAGCTTC 58.761 50.000 0.00 0.00 0.00 3.86
202 203 1.338020 CAAACAAAGGAAGGCGAGCTT 59.662 47.619 0.00 0.00 0.00 3.74
203 204 0.954452 CAAACAAAGGAAGGCGAGCT 59.046 50.000 0.00 0.00 0.00 4.09
204 205 0.668535 ACAAACAAAGGAAGGCGAGC 59.331 50.000 0.00 0.00 0.00 5.03
205 206 1.676006 ACACAAACAAAGGAAGGCGAG 59.324 47.619 0.00 0.00 0.00 5.03
206 207 1.757682 ACACAAACAAAGGAAGGCGA 58.242 45.000 0.00 0.00 0.00 5.54
207 208 2.577449 AACACAAACAAAGGAAGGCG 57.423 45.000 0.00 0.00 0.00 5.52
208 209 3.855858 TCAAACACAAACAAAGGAAGGC 58.144 40.909 0.00 0.00 0.00 4.35
209 210 5.906073 AGATCAAACACAAACAAAGGAAGG 58.094 37.500 0.00 0.00 0.00 3.46
210 211 5.979517 GGAGATCAAACACAAACAAAGGAAG 59.020 40.000 0.00 0.00 0.00 3.46
211 212 5.656416 AGGAGATCAAACACAAACAAAGGAA 59.344 36.000 0.00 0.00 0.00 3.36
212 213 5.200483 AGGAGATCAAACACAAACAAAGGA 58.800 37.500 0.00 0.00 0.00 3.36
213 214 5.520376 AGGAGATCAAACACAAACAAAGG 57.480 39.130 0.00 0.00 0.00 3.11
214 215 6.563422 TCAAGGAGATCAAACACAAACAAAG 58.437 36.000 0.00 0.00 0.00 2.77
215 216 6.522625 TCAAGGAGATCAAACACAAACAAA 57.477 33.333 0.00 0.00 0.00 2.83
216 217 6.713762 ATCAAGGAGATCAAACACAAACAA 57.286 33.333 0.00 0.00 28.20 2.83
217 218 6.713762 AATCAAGGAGATCAAACACAAACA 57.286 33.333 0.00 0.00 35.39 2.83
218 219 7.492344 ACAAAATCAAGGAGATCAAACACAAAC 59.508 33.333 0.00 0.00 35.39 2.93
219 220 7.555087 ACAAAATCAAGGAGATCAAACACAAA 58.445 30.769 0.00 0.00 35.39 2.83
220 221 7.111247 ACAAAATCAAGGAGATCAAACACAA 57.889 32.000 0.00 0.00 35.39 3.33
221 222 6.713762 ACAAAATCAAGGAGATCAAACACA 57.286 33.333 0.00 0.00 35.39 3.72
222 223 7.706179 TCAAACAAAATCAAGGAGATCAAACAC 59.294 33.333 0.00 0.00 35.39 3.32
223 224 7.780064 TCAAACAAAATCAAGGAGATCAAACA 58.220 30.769 0.00 0.00 35.39 2.83
224 225 8.647143 TTCAAACAAAATCAAGGAGATCAAAC 57.353 30.769 0.00 0.00 35.39 2.93
225 226 9.835389 AATTCAAACAAAATCAAGGAGATCAAA 57.165 25.926 0.00 0.00 35.39 2.69
226 227 9.263538 CAATTCAAACAAAATCAAGGAGATCAA 57.736 29.630 0.00 0.00 35.39 2.57
227 228 7.385752 GCAATTCAAACAAAATCAAGGAGATCA 59.614 33.333 0.00 0.00 35.39 2.92
228 229 7.385752 TGCAATTCAAACAAAATCAAGGAGATC 59.614 33.333 0.00 0.00 35.39 2.75
229 230 7.218614 TGCAATTCAAACAAAATCAAGGAGAT 58.781 30.769 0.00 0.00 39.09 2.75
230 231 6.580788 TGCAATTCAAACAAAATCAAGGAGA 58.419 32.000 0.00 0.00 0.00 3.71
231 232 6.847956 TGCAATTCAAACAAAATCAAGGAG 57.152 33.333 0.00 0.00 0.00 3.69
232 233 8.937884 CATATGCAATTCAAACAAAATCAAGGA 58.062 29.630 0.00 0.00 0.00 3.36
233 234 8.723311 ACATATGCAATTCAAACAAAATCAAGG 58.277 29.630 1.58 0.00 0.00 3.61
235 236 9.880064 CAACATATGCAATTCAAACAAAATCAA 57.120 25.926 1.58 0.00 0.00 2.57
236 237 9.053840 ACAACATATGCAATTCAAACAAAATCA 57.946 25.926 1.58 0.00 0.00 2.57
237 238 9.881529 AACAACATATGCAATTCAAACAAAATC 57.118 25.926 1.58 0.00 0.00 2.17
239 240 9.499585 CAAACAACATATGCAATTCAAACAAAA 57.500 25.926 1.58 0.00 0.00 2.44
240 241 8.671921 ACAAACAACATATGCAATTCAAACAAA 58.328 25.926 1.58 0.00 0.00 2.83
241 242 8.121086 CACAAACAACATATGCAATTCAAACAA 58.879 29.630 1.58 0.00 0.00 2.83
242 243 7.628235 CACAAACAACATATGCAATTCAAACA 58.372 30.769 1.58 0.00 0.00 2.83
243 244 6.574462 GCACAAACAACATATGCAATTCAAAC 59.426 34.615 1.58 0.00 36.30 2.93
244 245 6.482641 AGCACAAACAACATATGCAATTCAAA 59.517 30.769 1.58 0.00 38.79 2.69
245 246 5.990386 AGCACAAACAACATATGCAATTCAA 59.010 32.000 1.58 0.00 38.79 2.69
246 247 5.405873 CAGCACAAACAACATATGCAATTCA 59.594 36.000 1.58 0.00 38.79 2.57
247 248 5.634439 TCAGCACAAACAACATATGCAATTC 59.366 36.000 1.58 0.00 38.79 2.17
248 249 5.539979 TCAGCACAAACAACATATGCAATT 58.460 33.333 1.58 0.00 38.79 2.32
249 250 5.136816 TCAGCACAAACAACATATGCAAT 57.863 34.783 1.58 0.00 38.79 3.56
250 251 4.548494 CTCAGCACAAACAACATATGCAA 58.452 39.130 1.58 0.00 38.79 4.08
251 252 3.612241 GCTCAGCACAAACAACATATGCA 60.612 43.478 1.58 0.00 38.79 3.96
252 253 2.919229 GCTCAGCACAAACAACATATGC 59.081 45.455 1.58 0.00 36.52 3.14
253 254 3.165890 CGCTCAGCACAAACAACATATG 58.834 45.455 0.00 0.00 0.00 1.78
254 255 3.476295 CGCTCAGCACAAACAACATAT 57.524 42.857 0.00 0.00 0.00 1.78
255 256 2.967459 CGCTCAGCACAAACAACATA 57.033 45.000 0.00 0.00 0.00 2.29
256 257 3.851620 CGCTCAGCACAAACAACAT 57.148 47.368 0.00 0.00 0.00 2.71
267 268 0.665369 AAATTGCAAGTGCGCTCAGC 60.665 50.000 9.73 14.15 45.83 4.26
268 269 1.774639 AAAATTGCAAGTGCGCTCAG 58.225 45.000 9.73 3.03 45.83 3.35
269 270 1.859703 CAAAAATTGCAAGTGCGCTCA 59.140 42.857 9.73 0.00 45.83 4.26
270 271 2.565367 CAAAAATTGCAAGTGCGCTC 57.435 45.000 9.73 4.74 45.83 5.03
281 282 2.381967 CGGGCCGCTGCAAAAATTG 61.382 57.895 15.42 0.00 40.13 2.32
282 283 2.048316 CGGGCCGCTGCAAAAATT 60.048 55.556 15.42 0.00 40.13 1.82
293 294 3.858868 ATATAGTGCACGCGGGCCG 62.859 63.158 33.29 24.35 44.21 6.13
294 295 1.164041 AAATATAGTGCACGCGGGCC 61.164 55.000 33.29 22.24 0.00 5.80
295 296 0.661020 AAAATATAGTGCACGCGGGC 59.339 50.000 29.97 29.97 0.00 6.13
296 297 1.596954 GCAAAATATAGTGCACGCGGG 60.597 52.381 12.47 7.92 40.58 6.13
297 298 1.063321 TGCAAAATATAGTGCACGCGG 59.937 47.619 12.47 0.00 45.52 6.46
298 299 2.365948 CTGCAAAATATAGTGCACGCG 58.634 47.619 12.01 3.53 45.52 6.01
299 300 2.111756 GCTGCAAAATATAGTGCACGC 58.888 47.619 12.01 6.67 45.52 5.34
300 301 2.365948 CGCTGCAAAATATAGTGCACG 58.634 47.619 12.01 12.32 45.52 5.34
301 302 2.719798 CCGCTGCAAAATATAGTGCAC 58.280 47.619 9.40 9.40 45.52 4.57
303 304 1.600413 GGCCGCTGCAAAATATAGTGC 60.600 52.381 1.55 4.03 40.13 4.40
304 305 1.334059 CGGCCGCTGCAAAATATAGTG 60.334 52.381 14.67 0.00 40.13 2.74
305 306 0.944386 CGGCCGCTGCAAAATATAGT 59.056 50.000 14.67 0.00 40.13 2.12
306 307 0.385974 GCGGCCGCTGCAAAATATAG 60.386 55.000 41.71 0.75 40.13 1.31
307 308 1.652012 GCGGCCGCTGCAAAATATA 59.348 52.632 41.71 0.00 40.13 0.86
308 309 2.412937 GCGGCCGCTGCAAAATAT 59.587 55.556 41.71 0.00 40.13 1.28
326 327 1.103803 GTCTCGGATCACTGGCTACA 58.896 55.000 0.00 0.00 0.00 2.74
327 328 0.029567 CGTCTCGGATCACTGGCTAC 59.970 60.000 0.00 0.00 0.00 3.58
328 329 1.725557 GCGTCTCGGATCACTGGCTA 61.726 60.000 0.00 0.00 0.00 3.93
329 330 3.069980 GCGTCTCGGATCACTGGCT 62.070 63.158 0.00 0.00 0.00 4.75
330 331 2.583593 GCGTCTCGGATCACTGGC 60.584 66.667 0.00 0.00 0.00 4.85
331 332 2.278206 CGCGTCTCGGATCACTGG 60.278 66.667 0.00 0.00 33.78 4.00
332 333 2.951745 GCGCGTCTCGGATCACTG 60.952 66.667 8.43 0.00 38.94 3.66
333 334 2.486636 TTTGCGCGTCTCGGATCACT 62.487 55.000 8.43 0.00 38.62 3.41
334 335 1.623081 TTTTGCGCGTCTCGGATCAC 61.623 55.000 8.43 0.00 38.62 3.06
335 336 0.946700 TTTTTGCGCGTCTCGGATCA 60.947 50.000 8.43 0.00 38.62 2.92
336 337 0.518559 GTTTTTGCGCGTCTCGGATC 60.519 55.000 8.43 0.00 38.62 3.36
337 338 0.949105 AGTTTTTGCGCGTCTCGGAT 60.949 50.000 8.43 0.00 38.62 4.18
338 339 1.554042 GAGTTTTTGCGCGTCTCGGA 61.554 55.000 8.43 0.00 38.94 4.55
339 340 1.154654 GAGTTTTTGCGCGTCTCGG 60.155 57.895 8.43 0.00 38.94 4.63
340 341 0.718220 GTGAGTTTTTGCGCGTCTCG 60.718 55.000 8.43 0.00 42.12 4.04
341 342 0.718220 CGTGAGTTTTTGCGCGTCTC 60.718 55.000 8.43 6.54 33.72 3.36
342 343 1.149361 TCGTGAGTTTTTGCGCGTCT 61.149 50.000 8.43 0.00 38.93 4.18
343 344 0.110823 ATCGTGAGTTTTTGCGCGTC 60.111 50.000 8.43 0.00 38.93 5.19
344 345 0.306533 AATCGTGAGTTTTTGCGCGT 59.693 45.000 8.43 0.00 38.93 6.01
345 346 0.967803 GAATCGTGAGTTTTTGCGCG 59.032 50.000 0.00 0.00 39.19 6.86
346 347 1.327507 GGAATCGTGAGTTTTTGCGC 58.672 50.000 0.00 0.00 0.00 6.09
347 348 2.679355 TGGAATCGTGAGTTTTTGCG 57.321 45.000 0.00 0.00 0.00 4.85
348 349 4.298332 ACATTGGAATCGTGAGTTTTTGC 58.702 39.130 0.00 0.00 0.00 3.68
349 350 5.748152 ACAACATTGGAATCGTGAGTTTTTG 59.252 36.000 0.00 0.00 0.00 2.44
350 351 5.901552 ACAACATTGGAATCGTGAGTTTTT 58.098 33.333 0.00 0.00 0.00 1.94
351 352 5.067153 TGACAACATTGGAATCGTGAGTTTT 59.933 36.000 0.00 0.00 0.00 2.43
352 353 4.578516 TGACAACATTGGAATCGTGAGTTT 59.421 37.500 0.00 0.00 0.00 2.66
353 354 4.133820 TGACAACATTGGAATCGTGAGTT 58.866 39.130 0.00 0.00 0.00 3.01
354 355 3.738982 TGACAACATTGGAATCGTGAGT 58.261 40.909 0.00 0.00 0.00 3.41
355 356 4.747540 TTGACAACATTGGAATCGTGAG 57.252 40.909 0.00 0.00 0.00 3.51
356 357 4.578516 AGTTTGACAACATTGGAATCGTGA 59.421 37.500 0.00 0.00 35.05 4.35
357 358 4.858935 AGTTTGACAACATTGGAATCGTG 58.141 39.130 0.00 0.00 35.05 4.35
358 359 5.514274 AAGTTTGACAACATTGGAATCGT 57.486 34.783 0.00 0.00 35.05 3.73
359 360 6.826893 AAAAGTTTGACAACATTGGAATCG 57.173 33.333 0.00 0.00 35.05 3.34
390 391 2.546321 CAACAGCAGTCACGCGAC 59.454 61.111 15.93 0.00 42.95 5.19
391 392 2.661537 CCAACAGCAGTCACGCGA 60.662 61.111 15.93 0.00 36.85 5.87
392 393 2.661537 TCCAACAGCAGTCACGCG 60.662 61.111 3.53 3.53 36.85 6.01
393 394 0.671781 ATCTCCAACAGCAGTCACGC 60.672 55.000 0.00 0.00 0.00 5.34
394 395 1.073964 CATCTCCAACAGCAGTCACG 58.926 55.000 0.00 0.00 0.00 4.35
395 396 0.801251 GCATCTCCAACAGCAGTCAC 59.199 55.000 0.00 0.00 0.00 3.67
396 397 0.689055 AGCATCTCCAACAGCAGTCA 59.311 50.000 0.00 0.00 0.00 3.41
397 398 1.367659 GAGCATCTCCAACAGCAGTC 58.632 55.000 0.00 0.00 0.00 3.51
398 399 3.547567 GAGCATCTCCAACAGCAGT 57.452 52.632 0.00 0.00 0.00 4.40
411 412 2.169352 ACAGCGAGATGGTTTAGAGCAT 59.831 45.455 0.00 0.00 46.11 3.79
412 413 1.550524 ACAGCGAGATGGTTTAGAGCA 59.449 47.619 0.00 0.00 37.73 4.26
413 414 2.301577 ACAGCGAGATGGTTTAGAGC 57.698 50.000 0.00 0.00 0.00 4.09
414 415 3.862267 CAGAACAGCGAGATGGTTTAGAG 59.138 47.826 0.00 0.00 0.00 2.43
415 416 3.258372 ACAGAACAGCGAGATGGTTTAGA 59.742 43.478 0.00 0.00 0.00 2.10
416 417 3.369147 CACAGAACAGCGAGATGGTTTAG 59.631 47.826 0.00 0.00 0.00 1.85
417 418 3.325870 CACAGAACAGCGAGATGGTTTA 58.674 45.455 0.00 0.00 0.00 2.01
426 427 2.666190 GCCAGCACAGAACAGCGA 60.666 61.111 0.00 0.00 35.48 4.93
461 462 2.315176 CGGTTCTGGGAGAGATGATCT 58.685 52.381 0.00 0.00 42.61 2.75
462 463 1.270041 GCGGTTCTGGGAGAGATGATC 60.270 57.143 0.00 0.00 0.00 2.92
463 464 0.755686 GCGGTTCTGGGAGAGATGAT 59.244 55.000 0.00 0.00 0.00 2.45
583 595 3.565516 GAGGCAAAATCGGAAAGAACAC 58.434 45.455 0.00 0.00 0.00 3.32
584 596 2.225491 CGAGGCAAAATCGGAAAGAACA 59.775 45.455 0.00 0.00 36.54 3.18
620 637 3.297472 CGTAGTCTGTATGCCATACACG 58.703 50.000 13.43 11.16 40.60 4.49
621 638 3.050619 GCGTAGTCTGTATGCCATACAC 58.949 50.000 13.43 5.49 40.60 2.90
622 639 2.287368 CGCGTAGTCTGTATGCCATACA 60.287 50.000 16.28 16.28 43.06 2.29
623 640 2.316792 CGCGTAGTCTGTATGCCATAC 58.683 52.381 7.93 7.93 36.29 2.39
674 712 3.245990 GTGTGTACGGTGTACCTGTTTTC 59.754 47.826 4.78 0.00 0.00 2.29
821 878 1.048601 AAGACCGAGCAGGAGAACAA 58.951 50.000 5.19 0.00 45.00 2.83
823 880 2.171341 AAAAGACCGAGCAGGAGAAC 57.829 50.000 5.19 0.00 45.00 3.01
824 881 2.930826 AAAAAGACCGAGCAGGAGAA 57.069 45.000 5.19 0.00 45.00 2.87
955 1016 2.583520 GCCTCTGGGTGCTCTGAG 59.416 66.667 0.00 0.00 34.45 3.35
978 1039 1.270358 GCTCAAGGACCAAGTTCTCGT 60.270 52.381 0.00 0.00 0.00 4.18
1003 1064 2.352814 CGACGGAGAAGAACCACTCATT 60.353 50.000 0.00 0.00 35.17 2.57
1005 1066 0.596577 CGACGGAGAAGAACCACTCA 59.403 55.000 0.00 0.00 35.17 3.41
1207 1268 0.179134 ATGCGCCTCAAGTACTCGTC 60.179 55.000 4.18 0.00 0.00 4.20
1264 1331 2.028190 CGGCTCGATCGGCTCATT 59.972 61.111 22.14 0.00 0.00 2.57
1265 1332 4.654412 GCGGCTCGATCGGCTCAT 62.654 66.667 22.14 0.00 0.00 2.90
1421 1513 0.591170 ATTTGCAGTTCAACGACCGG 59.409 50.000 0.00 0.00 33.73 5.28
1455 1553 1.253034 CGTACGCGCAGAAGAGAAATC 59.747 52.381 5.73 0.00 0.00 2.17
1476 1574 2.594303 TTCTTGGCACCCTGCGTG 60.594 61.111 0.00 0.00 46.21 5.34
1646 1744 1.959042 CACGCCAGCCATAGAAGAAT 58.041 50.000 0.00 0.00 0.00 2.40
1699 1797 4.803426 CGTCACCCGCAGCTCCTC 62.803 72.222 0.00 0.00 0.00 3.71
1781 1879 3.927163 CTTTCCGGCGCACGTACCT 62.927 63.158 10.83 0.00 42.24 3.08
1808 1906 6.018180 AGCAATTCGTCGAAAGAACTAAAGTT 60.018 34.615 12.40 0.00 45.01 2.66
1898 1996 2.254459 CGTTGACTCATTCTGACCGAG 58.746 52.381 1.90 1.90 0.00 4.63
1987 2085 2.279741 GTTATTCGCATGTCTGCCTCA 58.720 47.619 0.00 0.00 46.07 3.86
1992 2090 3.792956 GGCATTTGTTATTCGCATGTCTG 59.207 43.478 0.00 0.00 0.00 3.51
1993 2091 3.696051 AGGCATTTGTTATTCGCATGTCT 59.304 39.130 0.00 0.00 0.00 3.41
2023 2121 3.131755 GGCAGGATTTGATTTCCTCAAGG 59.868 47.826 0.00 0.00 44.48 3.61
2049 2147 1.091771 ACGCTTCATTGGATCCTGCG 61.092 55.000 14.23 18.84 46.02 5.18
2057 2155 1.737793 GTTGGAGGTACGCTTCATTGG 59.262 52.381 0.00 0.00 0.00 3.16
2060 2158 3.418684 AAAGTTGGAGGTACGCTTCAT 57.581 42.857 0.00 0.00 0.00 2.57
2104 2202 4.411927 AGTACACCTCTCAACTCATCAGT 58.588 43.478 0.00 0.00 0.00 3.41
2107 2205 6.761099 TCTTAGTACACCTCTCAACTCATC 57.239 41.667 0.00 0.00 0.00 2.92
2117 2215 9.646427 GGATGATGATATTTCTTAGTACACCTC 57.354 37.037 0.00 0.00 0.00 3.85
2118 2216 9.386122 AGGATGATGATATTTCTTAGTACACCT 57.614 33.333 0.00 0.00 0.00 4.00
2135 2233 9.453572 GGCATATAGTGAATTAAAGGATGATGA 57.546 33.333 0.00 0.00 0.00 2.92
2141 2239 9.111519 TCATAGGGCATATAGTGAATTAAAGGA 57.888 33.333 0.00 0.00 0.00 3.36
2156 2254 2.040278 GGGCTTCACATCATAGGGCATA 59.960 50.000 0.00 0.00 0.00 3.14
2215 2317 5.496556 ACCATGGTCGAGTTAAAATCATGA 58.503 37.500 13.00 0.00 34.26 3.07
2231 2333 1.496429 GGGATCCATCAAGACCATGGT 59.504 52.381 19.89 19.89 41.59 3.55
2232 2334 1.779092 AGGGATCCATCAAGACCATGG 59.221 52.381 15.23 11.19 42.16 3.66
2236 2338 2.024941 ACCAAAGGGATCCATCAAGACC 60.025 50.000 15.23 0.00 38.05 3.85
2241 2343 3.634504 CATTGACCAAAGGGATCCATCA 58.365 45.455 15.23 4.17 38.05 3.07
2243 2345 2.292389 TGCATTGACCAAAGGGATCCAT 60.292 45.455 15.23 2.55 38.05 3.41
2247 2349 3.028850 CTCATGCATTGACCAAAGGGAT 58.971 45.455 0.00 0.00 38.05 3.85
2313 5343 1.287425 GATCGGTTCAAGTTAGGCCG 58.713 55.000 0.00 0.00 43.32 6.13
2329 5359 2.685100 ACTTGAAGAACCGAACCGATC 58.315 47.619 0.00 0.00 0.00 3.69
2330 5360 2.833631 ACTTGAAGAACCGAACCGAT 57.166 45.000 0.00 0.00 0.00 4.18
2331 5361 3.731652 TTACTTGAAGAACCGAACCGA 57.268 42.857 0.00 0.00 0.00 4.69
2332 5362 6.366877 TCTTTATTACTTGAAGAACCGAACCG 59.633 38.462 0.00 0.00 0.00 4.44
2333 5363 7.662604 TCTTTATTACTTGAAGAACCGAACC 57.337 36.000 0.00 0.00 0.00 3.62
2334 5364 9.595357 CTTTCTTTATTACTTGAAGAACCGAAC 57.405 33.333 0.00 0.00 38.66 3.95
2335 5365 9.550406 TCTTTCTTTATTACTTGAAGAACCGAA 57.450 29.630 0.00 0.00 38.66 4.30
2361 5391 4.454678 TCACATATACTACTCCGAACCGT 58.545 43.478 0.00 0.00 0.00 4.83
2368 5398 6.490381 TGACCAGTCATCACATATACTACTCC 59.510 42.308 0.00 0.00 34.14 3.85
2369 5399 7.308891 CCTGACCAGTCATCACATATACTACTC 60.309 44.444 0.04 0.00 39.13 2.59
2370 5400 6.491745 CCTGACCAGTCATCACATATACTACT 59.508 42.308 0.04 0.00 39.13 2.57
2371 5401 6.265649 ACCTGACCAGTCATCACATATACTAC 59.734 42.308 0.04 0.00 39.13 2.73
2372 5402 6.373759 ACCTGACCAGTCATCACATATACTA 58.626 40.000 0.04 0.00 39.13 1.82
2373 5403 5.211973 ACCTGACCAGTCATCACATATACT 58.788 41.667 0.04 0.00 39.13 2.12
2395 5425 2.223852 ACGTTTTGCATTTGTGGGGTAC 60.224 45.455 0.00 0.00 0.00 3.34
2399 5429 4.054671 ACAATACGTTTTGCATTTGTGGG 58.945 39.130 17.19 0.00 0.00 4.61
2415 5445 7.008628 CCAAATTCTCGATGCAGAAAACAATAC 59.991 37.037 0.00 0.00 35.99 1.89
2425 5455 2.752144 GAGCCAAATTCTCGATGCAG 57.248 50.000 0.00 0.00 0.00 4.41
2456 5486 4.417426 TCCTCCCAGAAAATATCGGTTC 57.583 45.455 0.00 0.00 0.00 3.62
2496 5526 2.089980 CTCCATTGTTTCTGGCTGAGG 58.910 52.381 0.00 0.00 33.56 3.86
2497 5527 2.787994 ACTCCATTGTTTCTGGCTGAG 58.212 47.619 0.00 0.00 33.56 3.35
2499 5529 3.191371 GGTTACTCCATTGTTTCTGGCTG 59.809 47.826 0.00 0.00 35.97 4.85
2505 5535 2.745821 GGGTCGGTTACTCCATTGTTTC 59.254 50.000 0.00 0.00 35.57 2.78
2596 5626 1.078426 GGGGTGCAGCGACATAACT 60.078 57.895 10.24 0.00 0.00 2.24
2600 5630 4.415150 CCAGGGGTGCAGCGACAT 62.415 66.667 10.24 0.00 0.00 3.06
2617 5659 1.104577 TTTGGGACGGGAAGTTGCAC 61.105 55.000 0.00 0.00 0.00 4.57
2620 5662 1.235724 GAGTTTGGGACGGGAAGTTG 58.764 55.000 0.00 0.00 0.00 3.16
2621 5663 0.109913 GGAGTTTGGGACGGGAAGTT 59.890 55.000 0.00 0.00 0.00 2.66
2638 5680 3.749064 GTCGCTGACGGCTGAGGA 61.749 66.667 0.00 0.00 41.84 3.71
2654 5696 1.079127 ATCTTGCGGCTTGCTACGT 60.079 52.632 0.00 0.00 46.63 3.57
2656 5698 1.026718 ACCATCTTGCGGCTTGCTAC 61.027 55.000 0.00 0.00 46.63 3.58
2660 5702 1.164411 TAACACCATCTTGCGGCTTG 58.836 50.000 0.00 0.00 0.00 4.01
2702 5744 0.537143 TTGATGCAAGGCGTGGAAGT 60.537 50.000 0.00 0.00 0.00 3.01
2746 5790 1.079127 CAACGCGGAGGAGTGGATT 60.079 57.895 12.47 0.00 0.00 3.01
2781 5825 1.019805 GGCGAGCTTAAAGGCTTCGT 61.020 55.000 0.00 0.00 43.20 3.85
2783 5827 0.729690 CTGGCGAGCTTAAAGGCTTC 59.270 55.000 0.00 0.00 43.20 3.86
2791 5835 1.295423 GGTGAACCTGGCGAGCTTA 59.705 57.895 0.00 0.00 0.00 3.09
2815 5859 0.682852 AAAGGGTCGACGGTGAATGA 59.317 50.000 9.92 0.00 0.00 2.57
2872 5916 1.252215 TTATCACCGACGAGGCCACA 61.252 55.000 5.01 0.00 46.52 4.17
2873 5917 0.104304 ATTATCACCGACGAGGCCAC 59.896 55.000 5.01 0.00 46.52 5.01
2880 5924 2.745281 ACCACCAAAATTATCACCGACG 59.255 45.455 0.00 0.00 0.00 5.12
2883 5927 4.095782 CCTACACCACCAAAATTATCACCG 59.904 45.833 0.00 0.00 0.00 4.94
2899 5943 3.704566 TCATCTGTCATGGTACCTACACC 59.295 47.826 14.36 0.00 39.20 4.16
2938 5982 3.965347 GGAGTATTTGGTAGGCTGGACTA 59.035 47.826 0.00 0.00 0.00 2.59
2946 5990 3.328050 GGATGGAGGGAGTATTTGGTAGG 59.672 52.174 0.00 0.00 0.00 3.18
2955 5999 6.011981 ACAAGTATTTTTGGATGGAGGGAGTA 60.012 38.462 0.00 0.00 32.32 2.59
2956 6000 5.222337 ACAAGTATTTTTGGATGGAGGGAGT 60.222 40.000 0.00 0.00 32.32 3.85
2957 6001 5.264395 ACAAGTATTTTTGGATGGAGGGAG 58.736 41.667 0.00 0.00 32.32 4.30
2958 6002 5.261216 GACAAGTATTTTTGGATGGAGGGA 58.739 41.667 0.00 0.00 32.32 4.20
2959 6003 4.096382 CGACAAGTATTTTTGGATGGAGGG 59.904 45.833 0.00 0.00 32.32 4.30
2960 6004 4.096382 CCGACAAGTATTTTTGGATGGAGG 59.904 45.833 0.00 0.00 32.32 4.30
2961 6005 4.941263 TCCGACAAGTATTTTTGGATGGAG 59.059 41.667 0.00 0.00 32.32 3.86
2962 6006 4.912586 TCCGACAAGTATTTTTGGATGGA 58.087 39.130 0.00 0.00 32.32 3.41
2963 6007 5.581605 CATCCGACAAGTATTTTTGGATGG 58.418 41.667 13.69 1.13 44.76 3.51
2965 6009 7.416664 CCATTCATCCGACAAGTATTTTTGGAT 60.417 37.037 0.00 0.00 35.20 3.41
2966 6010 6.127758 CCATTCATCCGACAAGTATTTTTGGA 60.128 38.462 0.00 0.00 32.32 3.53
2967 6011 6.035843 CCATTCATCCGACAAGTATTTTTGG 58.964 40.000 0.00 0.00 32.32 3.28
2968 6012 6.851609 TCCATTCATCCGACAAGTATTTTTG 58.148 36.000 0.00 0.00 0.00 2.44
2969 6013 7.122650 ACATCCATTCATCCGACAAGTATTTTT 59.877 33.333 0.00 0.00 0.00 1.94
2970 6014 6.603201 ACATCCATTCATCCGACAAGTATTTT 59.397 34.615 0.00 0.00 0.00 1.82
2971 6015 6.122277 ACATCCATTCATCCGACAAGTATTT 58.878 36.000 0.00 0.00 0.00 1.40
2972 6016 5.684704 ACATCCATTCATCCGACAAGTATT 58.315 37.500 0.00 0.00 0.00 1.89
2973 6017 5.296151 ACATCCATTCATCCGACAAGTAT 57.704 39.130 0.00 0.00 0.00 2.12
2974 6018 4.753516 ACATCCATTCATCCGACAAGTA 57.246 40.909 0.00 0.00 0.00 2.24
2975 6019 3.634397 ACATCCATTCATCCGACAAGT 57.366 42.857 0.00 0.00 0.00 3.16
2976 6020 5.545588 AGATACATCCATTCATCCGACAAG 58.454 41.667 0.00 0.00 0.00 3.16
2977 6021 5.551305 AGATACATCCATTCATCCGACAA 57.449 39.130 0.00 0.00 0.00 3.18
2978 6022 6.010219 TCTAGATACATCCATTCATCCGACA 58.990 40.000 0.00 0.00 0.00 4.35
2979 6023 6.326375 GTCTAGATACATCCATTCATCCGAC 58.674 44.000 0.00 0.00 0.00 4.79
2980 6024 5.123979 CGTCTAGATACATCCATTCATCCGA 59.876 44.000 0.00 0.00 0.00 4.55
2981 6025 5.106118 ACGTCTAGATACATCCATTCATCCG 60.106 44.000 0.00 0.00 0.00 4.18
2982 6026 6.274157 ACGTCTAGATACATCCATTCATCC 57.726 41.667 0.00 0.00 0.00 3.51
2983 6027 9.862371 AAATACGTCTAGATACATCCATTCATC 57.138 33.333 0.00 0.00 0.00 2.92
3032 6076 9.850628 CGGAAATACTTGTCGGAGAAATATATA 57.149 33.333 0.00 0.00 39.69 0.86
3033 6077 7.817962 CCGGAAATACTTGTCGGAGAAATATAT 59.182 37.037 0.00 0.00 42.94 0.86
3034 6078 7.014518 TCCGGAAATACTTGTCGGAGAAATATA 59.985 37.037 0.00 0.00 43.84 0.86
3035 6079 5.989777 CCGGAAATACTTGTCGGAGAAATAT 59.010 40.000 0.00 0.00 42.94 1.28
3036 6080 5.127519 TCCGGAAATACTTGTCGGAGAAATA 59.872 40.000 0.00 0.00 43.84 1.40
3037 6081 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3038 6082 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3039 6083 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3040 6084 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3041 6085 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3042 6086 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3043 6087 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3044 6088 1.652124 CACGTCCGGAAATACTTGTCG 59.348 52.381 5.23 4.48 0.00 4.35
3045 6089 1.997606 CCACGTCCGGAAATACTTGTC 59.002 52.381 5.23 0.00 0.00 3.18
3046 6090 1.345415 ACCACGTCCGGAAATACTTGT 59.655 47.619 5.23 0.00 0.00 3.16
3047 6091 2.088950 ACCACGTCCGGAAATACTTG 57.911 50.000 5.23 0.00 0.00 3.16
3048 6092 2.827921 ACTACCACGTCCGGAAATACTT 59.172 45.455 5.23 0.00 0.00 2.24
3049 6093 2.450476 ACTACCACGTCCGGAAATACT 58.550 47.619 5.23 0.00 0.00 2.12
3050 6094 2.947448 ACTACCACGTCCGGAAATAC 57.053 50.000 5.23 0.00 0.00 1.89
3051 6095 4.206375 TCATACTACCACGTCCGGAAATA 58.794 43.478 5.23 0.00 0.00 1.40
3052 6096 3.025978 TCATACTACCACGTCCGGAAAT 58.974 45.455 5.23 0.00 0.00 2.17
3053 6097 2.445427 TCATACTACCACGTCCGGAAA 58.555 47.619 5.23 0.00 0.00 3.13
3054 6098 2.127271 TCATACTACCACGTCCGGAA 57.873 50.000 5.23 0.00 0.00 4.30
3055 6099 2.019249 CTTCATACTACCACGTCCGGA 58.981 52.381 0.00 0.00 0.00 5.14
3056 6100 1.066605 CCTTCATACTACCACGTCCGG 59.933 57.143 0.00 0.00 0.00 5.14
3057 6101 2.019249 TCCTTCATACTACCACGTCCG 58.981 52.381 0.00 0.00 0.00 4.79
3058 6102 2.361438 CCTCCTTCATACTACCACGTCC 59.639 54.545 0.00 0.00 0.00 4.79
3059 6103 2.361438 CCCTCCTTCATACTACCACGTC 59.639 54.545 0.00 0.00 0.00 4.34
3060 6104 2.385803 CCCTCCTTCATACTACCACGT 58.614 52.381 0.00 0.00 0.00 4.49
3061 6105 1.687123 CCCCTCCTTCATACTACCACG 59.313 57.143 0.00 0.00 0.00 4.94
3062 6106 3.042059 TCCCCTCCTTCATACTACCAC 57.958 52.381 0.00 0.00 0.00 4.16
3063 6107 3.273886 TCTTCCCCTCCTTCATACTACCA 59.726 47.826 0.00 0.00 0.00 3.25
3064 6108 3.924922 TCTTCCCCTCCTTCATACTACC 58.075 50.000 0.00 0.00 0.00 3.18
3065 6109 5.209659 TCTTCTTCCCCTCCTTCATACTAC 58.790 45.833 0.00 0.00 0.00 2.73
3066 6110 5.483174 TCTTCTTCCCCTCCTTCATACTA 57.517 43.478 0.00 0.00 0.00 1.82
3067 6111 4.354208 TCTTCTTCCCCTCCTTCATACT 57.646 45.455 0.00 0.00 0.00 2.12
3068 6112 4.680975 CGTTCTTCTTCCCCTCCTTCATAC 60.681 50.000 0.00 0.00 0.00 2.39
3094 6138 2.158957 GGGCTCCATGATGTCGAAACTA 60.159 50.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.