Multiple sequence alignment - TraesCS3B01G342500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G342500 chr3B 100.000 3316 0 0 1 3316 549794171 549790856 0.000000e+00 6124.0
1 TraesCS3B01G342500 chr3B 94.650 243 11 2 2686 2927 556850240 556850481 3.120000e-100 375.0
2 TraesCS3B01G342500 chr3B 94.643 112 6 0 2552 2663 556849751 556849862 1.220000e-39 174.0
3 TraesCS3B01G342500 chr3D 93.588 2464 115 19 1 2426 422063294 422060836 0.000000e+00 3635.0
4 TraesCS3B01G342500 chr3A 94.546 2292 103 9 167 2444 529105517 529107800 0.000000e+00 3520.0
5 TraesCS3B01G342500 chr3A 94.309 123 7 0 2771 2893 86402054 86401932 4.370000e-44 189.0
6 TraesCS3B01G342500 chr3A 93.496 123 8 0 2771 2893 86398738 86398616 2.030000e-42 183.0
7 TraesCS3B01G342500 chr5B 95.989 374 14 1 2552 2925 583692287 583691915 1.020000e-169 606.0
8 TraesCS3B01G342500 chr5B 83.978 181 26 2 3135 3313 670249494 670249315 1.580000e-38 171.0
9 TraesCS3B01G342500 chr5B 86.111 144 12 1 23 158 86344315 86344458 7.410000e-32 148.0
10 TraesCS3B01G342500 chr1B 93.995 383 20 3 2546 2927 60355387 60355767 7.980000e-161 577.0
11 TraesCS3B01G342500 chr1B 84.270 178 26 1 3135 3310 391266139 391265962 4.400000e-39 172.0
12 TraesCS3B01G342500 chr2B 93.617 376 22 2 2551 2926 104006915 104006542 8.030000e-156 560.0
13 TraesCS3B01G342500 chr5A 90.566 212 16 3 2671 2879 486753181 486752971 9.060000e-71 278.0
14 TraesCS3B01G342500 chr5A 83.140 172 21 1 1 164 226776202 226776031 2.060000e-32 150.0
15 TraesCS3B01G342500 chr5A 82.530 166 21 1 1 158 223734808 223734643 4.460000e-29 139.0
16 TraesCS3B01G342500 chr5A 81.169 154 21 1 19 164 223780472 223780319 2.090000e-22 117.0
17 TraesCS3B01G342500 chr5A 93.878 49 2 1 2877 2924 486752523 486752475 4.590000e-09 73.1
18 TraesCS3B01G342500 chr5D 86.740 181 21 2 3135 3313 531227350 531227171 7.260000e-47 198.0
19 TraesCS3B01G342500 chr1A 86.047 172 16 1 1 164 405596243 405596072 9.450000e-41 178.0
20 TraesCS3B01G342500 chr6A 84.302 172 25 1 3135 3304 17581043 17580872 2.050000e-37 167.0
21 TraesCS3B01G342500 chr7B 83.735 166 19 1 1 158 218898190 218898355 2.060000e-32 150.0
22 TraesCS3B01G342500 chr7D 83.140 172 20 2 1 164 131932234 131932064 7.410000e-32 148.0
23 TraesCS3B01G342500 chr7D 88.496 113 12 1 3149 3261 605834976 605834865 5.770000e-28 135.0
24 TraesCS3B01G342500 chr7A 84.277 159 16 6 9 158 577988073 577987915 2.670000e-31 147.0
25 TraesCS3B01G342500 chr6B 83.230 161 24 3 3149 3307 585330066 585330225 9.590000e-31 145.0
26 TraesCS3B01G342500 chr6B 88.136 118 12 1 3189 3304 544396152 544396035 4.460000e-29 139.0
27 TraesCS3B01G342500 chr1D 82.659 173 21 2 1 164 209543131 209542959 9.590000e-31 145.0
28 TraesCS3B01G342500 chr2A 74.503 302 59 16 1272 1564 444797378 444797086 7.520000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G342500 chr3B 549790856 549794171 3315 True 6124.0 6124 100.0000 1 3316 1 chr3B.!!$R1 3315
1 TraesCS3B01G342500 chr3B 556849751 556850481 730 False 274.5 375 94.6465 2552 2927 2 chr3B.!!$F1 375
2 TraesCS3B01G342500 chr3D 422060836 422063294 2458 True 3635.0 3635 93.5880 1 2426 1 chr3D.!!$R1 2425
3 TraesCS3B01G342500 chr3A 529105517 529107800 2283 False 3520.0 3520 94.5460 167 2444 1 chr3A.!!$F1 2277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 892 0.107361 TGTGCTGCCTCTCCATGATG 60.107 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2531 2571 0.034896 GAGAGTCCACCCGCAAAAGA 59.965 55.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 95 5.196695 AGAGCTTGAATCTGGGTAAAATCC 58.803 41.667 0.00 0.00 0.00 3.01
88 97 5.196695 AGCTTGAATCTGGGTAAAATCCTC 58.803 41.667 0.00 0.00 0.00 3.71
93 102 4.779993 ATCTGGGTAAAATCCTCTGTCC 57.220 45.455 0.00 0.00 0.00 4.02
108 117 0.389296 TGTCCGTGTTACCATCGCTG 60.389 55.000 0.00 0.00 0.00 5.18
155 164 7.626664 GCCTATTACGAGATATGCCGGATATAG 60.627 44.444 5.05 4.24 0.00 1.31
158 167 7.818997 TTACGAGATATGCCGGATATAGAAT 57.181 36.000 5.05 0.00 0.00 2.40
159 168 6.716934 ACGAGATATGCCGGATATAGAATT 57.283 37.500 5.05 0.00 0.00 2.17
165 174 4.955811 TGCCGGATATAGAATTGACAGT 57.044 40.909 5.05 0.00 0.00 3.55
174 183 3.983044 AGAATTGACAGTAGGGTCACC 57.017 47.619 0.00 0.00 46.76 4.02
209 218 4.544001 CGAGTCGCCTAGGAGAGT 57.456 61.111 21.52 21.52 0.00 3.24
239 248 4.083643 CGCCATCTCGAAATTAGCATTCAT 60.084 41.667 0.00 0.00 0.00 2.57
315 324 5.005682 ACGCCGTATTTTCCGTTAACTATTC 59.994 40.000 3.71 0.00 0.00 1.75
330 339 8.601476 CGTTAACTATTCGGAGCTCTAATTTTT 58.399 33.333 14.64 11.68 0.00 1.94
442 452 3.123620 GCGCTGCCACTTCTCCAG 61.124 66.667 0.00 0.00 0.00 3.86
468 478 1.142262 ACCGTGCCCAAAGTAGTTTCT 59.858 47.619 0.00 0.00 0.00 2.52
507 517 1.301637 CACACCCTGATCGTGCACA 60.302 57.895 18.64 4.45 34.45 4.57
567 577 4.918588 TCCATGCATCAGCTATCAATGAT 58.081 39.130 0.00 0.00 42.74 2.45
638 648 1.738099 CCTCCTTGGAAGCACGTCG 60.738 63.158 0.00 0.00 38.35 5.12
708 721 9.659135 ATTTCCATACCATATGATCCTCAAAAA 57.341 29.630 3.65 0.00 0.00 1.94
709 722 8.696043 TTCCATACCATATGATCCTCAAAAAG 57.304 34.615 3.65 0.00 0.00 2.27
765 780 4.714308 AGAACATGAAACCAAGGGAACAAA 59.286 37.500 0.00 0.00 0.00 2.83
766 781 5.366477 AGAACATGAAACCAAGGGAACAAAT 59.634 36.000 0.00 0.00 0.00 2.32
812 829 2.088104 TATCTTCTCCGGCCATGTCT 57.912 50.000 2.24 0.00 0.00 3.41
813 830 0.467384 ATCTTCTCCGGCCATGTCTG 59.533 55.000 2.24 0.00 0.00 3.51
875 892 0.107361 TGTGCTGCCTCTCCATGATG 60.107 55.000 0.00 0.00 0.00 3.07
989 1006 2.121538 CCGCGAGAGGGTCTGATCA 61.122 63.158 8.23 0.00 43.37 2.92
1024 1041 2.046892 GCGCTTCTTGGCTCCTGA 60.047 61.111 0.00 0.00 0.00 3.86
1035 1052 3.775654 CTCCTGACGTGCTCCCCC 61.776 72.222 0.00 0.00 0.00 5.40
1083 1100 2.687200 ACCACCGGCCTGCTGATA 60.687 61.111 0.00 0.00 0.00 2.15
1089 1106 2.490148 CGGCCTGCTGATACTCGGA 61.490 63.158 0.00 0.00 0.00 4.55
1092 1109 1.827969 GGCCTGCTGATACTCGGATAT 59.172 52.381 0.00 0.00 0.00 1.63
1395 1412 1.038130 AGCAGCCGTTCCTCGAGTAT 61.038 55.000 12.31 0.00 42.86 2.12
1521 1538 2.523168 TGGGACTGGCTCGTCACA 60.523 61.111 8.09 8.09 44.55 3.58
1608 1626 0.465705 TCCCTGCTCCGATTGATGAC 59.534 55.000 0.00 0.00 0.00 3.06
1609 1627 0.533755 CCCTGCTCCGATTGATGACC 60.534 60.000 0.00 0.00 0.00 4.02
1614 1632 2.208431 GCTCCGATTGATGACCTCTTG 58.792 52.381 0.00 0.00 0.00 3.02
1823 1841 2.103042 GCCTGATGCGTTCGAGCTT 61.103 57.895 0.00 0.00 38.13 3.74
1865 1883 2.842188 TACTGAGCCGGGCCTTCGTA 62.842 60.000 17.02 9.48 0.00 3.43
2000 2018 2.254546 TCAAGAACAGCACCGTCAAT 57.745 45.000 0.00 0.00 0.00 2.57
2014 2032 1.439679 GTCAATCACACCTTCCGGAC 58.560 55.000 1.83 0.00 0.00 4.79
2135 2153 0.317799 CGCTGCTGCAGAGGATAGAT 59.682 55.000 32.30 0.00 39.64 1.98
2423 2463 0.533032 TCGCAATGGTCCGACATGTA 59.467 50.000 0.00 0.00 0.00 2.29
2427 2467 3.123453 CGCAATGGTCCGACATGTATATG 59.877 47.826 0.00 0.00 40.24 1.78
2436 2476 3.427638 CCGACATGTATATGGGACGCTAG 60.428 52.174 0.00 0.00 38.66 3.42
2444 2484 5.483937 TGTATATGGGACGCTAGATCCAAAT 59.516 40.000 13.78 9.66 38.06 2.32
2445 2485 3.864789 ATGGGACGCTAGATCCAAATT 57.135 42.857 13.78 0.00 38.06 1.82
2446 2486 2.917933 TGGGACGCTAGATCCAAATTG 58.082 47.619 13.78 0.00 38.06 2.32
2447 2487 2.238646 TGGGACGCTAGATCCAAATTGT 59.761 45.455 13.78 0.00 38.06 2.71
2448 2488 2.872858 GGGACGCTAGATCCAAATTGTC 59.127 50.000 13.78 0.00 38.06 3.18
2449 2489 2.872858 GGACGCTAGATCCAAATTGTCC 59.127 50.000 8.28 4.38 38.01 4.02
2450 2490 2.540101 GACGCTAGATCCAAATTGTCCG 59.460 50.000 0.00 0.00 0.00 4.79
2451 2491 2.093658 ACGCTAGATCCAAATTGTCCGT 60.094 45.455 0.00 0.00 0.00 4.69
2452 2492 2.936498 CGCTAGATCCAAATTGTCCGTT 59.064 45.455 0.00 0.00 0.00 4.44
2453 2493 3.001330 CGCTAGATCCAAATTGTCCGTTC 59.999 47.826 0.00 0.00 0.00 3.95
2454 2494 4.192317 GCTAGATCCAAATTGTCCGTTCT 58.808 43.478 0.00 0.00 0.00 3.01
2455 2495 5.357257 GCTAGATCCAAATTGTCCGTTCTA 58.643 41.667 0.00 0.00 0.00 2.10
2456 2496 5.234543 GCTAGATCCAAATTGTCCGTTCTAC 59.765 44.000 0.00 0.00 0.00 2.59
2457 2497 5.422214 AGATCCAAATTGTCCGTTCTACT 57.578 39.130 0.00 0.00 0.00 2.57
2458 2498 5.805728 AGATCCAAATTGTCCGTTCTACTT 58.194 37.500 0.00 0.00 0.00 2.24
2459 2499 5.875359 AGATCCAAATTGTCCGTTCTACTTC 59.125 40.000 0.00 0.00 0.00 3.01
2460 2500 4.320870 TCCAAATTGTCCGTTCTACTTCC 58.679 43.478 0.00 0.00 0.00 3.46
2461 2501 4.069304 CCAAATTGTCCGTTCTACTTCCA 58.931 43.478 0.00 0.00 0.00 3.53
2462 2502 4.700213 CCAAATTGTCCGTTCTACTTCCAT 59.300 41.667 0.00 0.00 0.00 3.41
2463 2503 5.183140 CCAAATTGTCCGTTCTACTTCCATT 59.817 40.000 0.00 0.00 0.00 3.16
2464 2504 6.373216 CCAAATTGTCCGTTCTACTTCCATTA 59.627 38.462 0.00 0.00 0.00 1.90
2465 2505 6.980051 AATTGTCCGTTCTACTTCCATTAC 57.020 37.500 0.00 0.00 0.00 1.89
2466 2506 5.471556 TTGTCCGTTCTACTTCCATTACA 57.528 39.130 0.00 0.00 0.00 2.41
2467 2507 5.670792 TGTCCGTTCTACTTCCATTACAT 57.329 39.130 0.00 0.00 0.00 2.29
2468 2508 6.045072 TGTCCGTTCTACTTCCATTACATT 57.955 37.500 0.00 0.00 0.00 2.71
2469 2509 6.469410 TGTCCGTTCTACTTCCATTACATTT 58.531 36.000 0.00 0.00 0.00 2.32
2470 2510 6.938030 TGTCCGTTCTACTTCCATTACATTTT 59.062 34.615 0.00 0.00 0.00 1.82
2471 2511 7.446013 TGTCCGTTCTACTTCCATTACATTTTT 59.554 33.333 0.00 0.00 0.00 1.94
2495 2535 7.811482 TTTTAGGGGTACTACTTCCATTACA 57.189 36.000 0.00 0.00 0.00 2.41
2496 2536 7.427989 TTTAGGGGTACTACTTCCATTACAG 57.572 40.000 0.00 0.00 0.00 2.74
2497 2537 4.296056 AGGGGTACTACTTCCATTACAGG 58.704 47.826 0.00 0.00 0.00 4.00
2498 2538 3.181457 GGGGTACTACTTCCATTACAGGC 60.181 52.174 0.00 0.00 0.00 4.85
2499 2539 3.453353 GGGTACTACTTCCATTACAGGCA 59.547 47.826 0.00 0.00 0.00 4.75
2500 2540 4.102681 GGGTACTACTTCCATTACAGGCAT 59.897 45.833 0.00 0.00 0.00 4.40
2501 2541 5.298347 GGTACTACTTCCATTACAGGCATC 58.702 45.833 0.00 0.00 0.00 3.91
2502 2542 5.163343 GGTACTACTTCCATTACAGGCATCA 60.163 44.000 0.00 0.00 0.00 3.07
2503 2543 5.435686 ACTACTTCCATTACAGGCATCAA 57.564 39.130 0.00 0.00 0.00 2.57
2504 2544 6.006275 ACTACTTCCATTACAGGCATCAAT 57.994 37.500 0.00 0.00 0.00 2.57
2505 2545 6.426587 ACTACTTCCATTACAGGCATCAATT 58.573 36.000 0.00 0.00 0.00 2.32
2506 2546 5.587388 ACTTCCATTACAGGCATCAATTG 57.413 39.130 0.00 0.00 0.00 2.32
2507 2547 5.018809 ACTTCCATTACAGGCATCAATTGT 58.981 37.500 5.13 0.00 0.00 2.71
2508 2548 5.481473 ACTTCCATTACAGGCATCAATTGTT 59.519 36.000 5.13 0.00 0.00 2.83
2509 2549 5.999205 TCCATTACAGGCATCAATTGTTT 57.001 34.783 5.13 0.00 0.00 2.83
2510 2550 7.178274 ACTTCCATTACAGGCATCAATTGTTTA 59.822 33.333 5.13 0.00 0.00 2.01
2511 2551 7.658525 TCCATTACAGGCATCAATTGTTTAT 57.341 32.000 5.13 0.00 0.00 1.40
2512 2552 7.490840 TCCATTACAGGCATCAATTGTTTATG 58.509 34.615 5.13 3.37 0.00 1.90
2513 2553 6.702723 CCATTACAGGCATCAATTGTTTATGG 59.297 38.462 5.13 3.96 33.50 2.74
2514 2554 7.417683 CCATTACAGGCATCAATTGTTTATGGA 60.418 37.037 5.13 0.00 37.66 3.41
2515 2555 5.329035 ACAGGCATCAATTGTTTATGGAC 57.671 39.130 5.13 0.00 0.00 4.02
2516 2556 5.018809 ACAGGCATCAATTGTTTATGGACT 58.981 37.500 5.13 0.00 0.00 3.85
2517 2557 5.126061 ACAGGCATCAATTGTTTATGGACTC 59.874 40.000 5.13 0.00 0.00 3.36
2518 2558 5.359009 CAGGCATCAATTGTTTATGGACTCT 59.641 40.000 5.13 0.00 0.00 3.24
2519 2559 5.591877 AGGCATCAATTGTTTATGGACTCTC 59.408 40.000 5.13 0.00 0.00 3.20
2520 2560 5.591877 GGCATCAATTGTTTATGGACTCTCT 59.408 40.000 5.13 0.00 0.00 3.10
2521 2561 6.096001 GGCATCAATTGTTTATGGACTCTCTT 59.904 38.462 5.13 0.00 0.00 2.85
2522 2562 7.283127 GGCATCAATTGTTTATGGACTCTCTTA 59.717 37.037 5.13 0.00 0.00 2.10
2523 2563 8.677300 GCATCAATTGTTTATGGACTCTCTTAA 58.323 33.333 5.13 0.00 0.00 1.85
2524 2564 9.994432 CATCAATTGTTTATGGACTCTCTTAAC 57.006 33.333 5.13 0.00 0.00 2.01
2525 2565 8.251750 TCAATTGTTTATGGACTCTCTTAACG 57.748 34.615 5.13 0.00 0.00 3.18
2526 2566 7.876068 TCAATTGTTTATGGACTCTCTTAACGT 59.124 33.333 5.13 0.00 0.00 3.99
2527 2567 8.504005 CAATTGTTTATGGACTCTCTTAACGTT 58.496 33.333 5.88 5.88 0.00 3.99
2528 2568 8.617290 ATTGTTTATGGACTCTCTTAACGTTT 57.383 30.769 5.91 0.00 0.00 3.60
2529 2569 8.441312 TTGTTTATGGACTCTCTTAACGTTTT 57.559 30.769 5.91 0.00 0.00 2.43
2530 2570 8.441312 TGTTTATGGACTCTCTTAACGTTTTT 57.559 30.769 5.91 0.00 0.00 1.94
2546 2586 2.588027 TTTTTCTTTTGCGGGTGGAC 57.412 45.000 0.00 0.00 0.00 4.02
2547 2587 1.770294 TTTTCTTTTGCGGGTGGACT 58.230 45.000 0.00 0.00 0.00 3.85
2548 2588 1.314730 TTTCTTTTGCGGGTGGACTC 58.685 50.000 0.00 0.00 0.00 3.36
2549 2589 0.472471 TTCTTTTGCGGGTGGACTCT 59.528 50.000 0.00 0.00 0.00 3.24
2550 2590 0.034896 TCTTTTGCGGGTGGACTCTC 59.965 55.000 0.00 0.00 0.00 3.20
2578 2618 1.599797 GTTTGGACGTGAGGGTGGG 60.600 63.158 0.00 0.00 0.00 4.61
2593 2633 2.623239 GGGTGGGTATTTCCAGGGAAAG 60.623 54.545 17.63 0.00 45.66 2.62
2604 2644 1.289160 CAGGGAAAGGATGACCAGGA 58.711 55.000 0.00 0.00 38.94 3.86
2627 2667 8.063770 AGGATGGAAGATTCTTGGTCAAATTAT 58.936 33.333 3.03 0.00 0.00 1.28
2752 3147 0.806102 AATTGTCTCCCGATGTCGCG 60.806 55.000 0.00 0.00 38.18 5.87
2781 3176 0.326238 TCCTATCCCGGGGATATGGC 60.326 60.000 31.06 0.00 42.88 4.40
2783 3178 0.686441 CTATCCCGGGGATATGGCGA 60.686 60.000 31.06 13.98 42.88 5.54
2927 3323 3.656751 TGGGTTACCAAACTAGCCCTTAA 59.343 43.478 2.98 0.00 45.87 1.85
2928 3324 4.012374 GGGTTACCAAACTAGCCCTTAAC 58.988 47.826 2.98 0.00 34.91 2.01
2929 3325 3.686241 GGTTACCAAACTAGCCCTTAACG 59.314 47.826 0.00 0.00 35.81 3.18
2930 3326 4.318332 GTTACCAAACTAGCCCTTAACGT 58.682 43.478 0.00 0.00 32.54 3.99
2931 3327 3.497103 ACCAAACTAGCCCTTAACGTT 57.503 42.857 5.88 5.88 0.00 3.99
2932 3328 3.405831 ACCAAACTAGCCCTTAACGTTC 58.594 45.455 2.82 0.00 0.00 3.95
2933 3329 3.181452 ACCAAACTAGCCCTTAACGTTCA 60.181 43.478 2.82 0.00 0.00 3.18
2934 3330 3.187842 CCAAACTAGCCCTTAACGTTCAC 59.812 47.826 2.82 0.00 0.00 3.18
2935 3331 2.358939 ACTAGCCCTTAACGTTCACG 57.641 50.000 2.82 0.00 46.33 4.35
2936 3332 1.067354 ACTAGCCCTTAACGTTCACGG 60.067 52.381 2.82 3.37 44.95 4.94
2937 3333 0.247185 TAGCCCTTAACGTTCACGGG 59.753 55.000 19.65 19.65 44.95 5.28
2938 3334 3.569902 CCCTTAACGTTCACGGGC 58.430 61.111 2.82 0.00 44.95 6.13
2939 3335 2.385091 CCCTTAACGTTCACGGGCG 61.385 63.158 2.82 0.00 44.95 6.13
2940 3336 1.373246 CCTTAACGTTCACGGGCGA 60.373 57.895 2.82 0.00 44.95 5.54
2941 3337 1.349259 CCTTAACGTTCACGGGCGAG 61.349 60.000 2.82 0.00 44.95 5.03
2942 3338 0.387622 CTTAACGTTCACGGGCGAGA 60.388 55.000 2.82 0.00 44.95 4.04
2943 3339 0.031857 TTAACGTTCACGGGCGAGAA 59.968 50.000 2.82 0.00 44.95 2.87
2944 3340 0.244450 TAACGTTCACGGGCGAGAAT 59.756 50.000 2.82 0.00 44.95 2.40
2945 3341 1.289109 AACGTTCACGGGCGAGAATG 61.289 55.000 4.07 0.00 44.95 2.67
2946 3342 1.445410 CGTTCACGGGCGAGAATGA 60.445 57.895 0.00 0.00 34.96 2.57
2947 3343 1.683790 CGTTCACGGGCGAGAATGAC 61.684 60.000 0.00 0.00 34.96 3.06
2948 3344 0.669318 GTTCACGGGCGAGAATGACA 60.669 55.000 0.00 0.00 0.00 3.58
2949 3345 0.249120 TTCACGGGCGAGAATGACAT 59.751 50.000 0.00 0.00 0.00 3.06
2950 3346 0.249120 TCACGGGCGAGAATGACATT 59.751 50.000 0.00 0.00 0.00 2.71
2951 3347 1.086696 CACGGGCGAGAATGACATTT 58.913 50.000 1.39 0.00 0.00 2.32
2952 3348 2.093921 TCACGGGCGAGAATGACATTTA 60.094 45.455 1.39 0.00 0.00 1.40
2953 3349 2.030457 CACGGGCGAGAATGACATTTAC 59.970 50.000 1.39 0.00 0.00 2.01
2954 3350 2.276201 CGGGCGAGAATGACATTTACA 58.724 47.619 1.39 0.00 0.00 2.41
2955 3351 2.675844 CGGGCGAGAATGACATTTACAA 59.324 45.455 1.39 0.00 0.00 2.41
2956 3352 3.126171 CGGGCGAGAATGACATTTACAAA 59.874 43.478 1.39 0.00 0.00 2.83
2957 3353 4.378978 CGGGCGAGAATGACATTTACAAAA 60.379 41.667 1.39 0.00 0.00 2.44
2958 3354 5.095490 GGGCGAGAATGACATTTACAAAAG 58.905 41.667 1.39 0.00 0.00 2.27
2959 3355 5.106317 GGGCGAGAATGACATTTACAAAAGA 60.106 40.000 1.39 0.00 0.00 2.52
2960 3356 6.404734 GGGCGAGAATGACATTTACAAAAGAT 60.405 38.462 1.39 0.00 0.00 2.40
2961 3357 7.029563 GGCGAGAATGACATTTACAAAAGATT 58.970 34.615 1.39 0.00 0.00 2.40
2962 3358 7.542130 GGCGAGAATGACATTTACAAAAGATTT 59.458 33.333 1.39 0.00 0.00 2.17
2963 3359 8.578769 GCGAGAATGACATTTACAAAAGATTTC 58.421 33.333 1.39 0.00 0.00 2.17
2964 3360 9.065871 CGAGAATGACATTTACAAAAGATTTCC 57.934 33.333 1.39 0.00 0.00 3.13
2965 3361 9.912634 GAGAATGACATTTACAAAAGATTTCCA 57.087 29.630 1.39 0.00 0.00 3.53
2968 3364 7.887996 TGACATTTACAAAAGATTTCCATGC 57.112 32.000 0.00 0.00 0.00 4.06
2969 3365 7.440198 TGACATTTACAAAAGATTTCCATGCA 58.560 30.769 0.00 0.00 0.00 3.96
2970 3366 7.930325 TGACATTTACAAAAGATTTCCATGCAA 59.070 29.630 0.00 0.00 0.00 4.08
2971 3367 8.851541 ACATTTACAAAAGATTTCCATGCAAT 57.148 26.923 0.00 0.00 0.00 3.56
2972 3368 9.287373 ACATTTACAAAAGATTTCCATGCAATT 57.713 25.926 0.00 0.00 0.00 2.32
3021 3417 8.806429 TTTCAAATTAGCATGTCTATTCCTCA 57.194 30.769 0.00 0.00 0.00 3.86
3022 3418 8.985315 TTCAAATTAGCATGTCTATTCCTCAT 57.015 30.769 0.00 0.00 0.00 2.90
3023 3419 8.985315 TCAAATTAGCATGTCTATTCCTCATT 57.015 30.769 0.00 0.00 0.00 2.57
3024 3420 8.843262 TCAAATTAGCATGTCTATTCCTCATTG 58.157 33.333 0.00 0.00 0.00 2.82
3025 3421 7.756395 AATTAGCATGTCTATTCCTCATTGG 57.244 36.000 0.00 0.00 37.10 3.16
3026 3422 6.499106 TTAGCATGTCTATTCCTCATTGGA 57.501 37.500 0.00 0.00 44.51 3.53
3027 3423 5.579753 AGCATGTCTATTCCTCATTGGAT 57.420 39.130 0.00 0.00 45.68 3.41
3028 3424 6.692849 AGCATGTCTATTCCTCATTGGATA 57.307 37.500 0.00 0.00 45.68 2.59
3029 3425 7.083062 AGCATGTCTATTCCTCATTGGATAA 57.917 36.000 0.00 0.00 45.68 1.75
3030 3426 7.166851 AGCATGTCTATTCCTCATTGGATAAG 58.833 38.462 0.00 0.00 45.68 1.73
3031 3427 6.373774 GCATGTCTATTCCTCATTGGATAAGG 59.626 42.308 0.00 0.00 45.68 2.69
3032 3428 5.869579 TGTCTATTCCTCATTGGATAAGGC 58.130 41.667 0.00 0.00 45.68 4.35
3033 3429 5.369404 TGTCTATTCCTCATTGGATAAGGCA 59.631 40.000 0.00 0.00 45.68 4.75
3034 3430 6.044754 TGTCTATTCCTCATTGGATAAGGCAT 59.955 38.462 0.00 0.00 45.68 4.40
3035 3431 6.944862 GTCTATTCCTCATTGGATAAGGCATT 59.055 38.462 0.00 0.00 45.68 3.56
3036 3432 7.449704 GTCTATTCCTCATTGGATAAGGCATTT 59.550 37.037 0.00 0.00 45.68 2.32
3037 3433 5.857471 TTCCTCATTGGATAAGGCATTTG 57.143 39.130 0.00 0.00 45.68 2.32
3038 3434 5.128033 TCCTCATTGGATAAGGCATTTGA 57.872 39.130 0.00 0.00 40.56 2.69
3039 3435 5.135383 TCCTCATTGGATAAGGCATTTGAG 58.865 41.667 0.00 0.00 40.56 3.02
3040 3436 5.103982 TCCTCATTGGATAAGGCATTTGAGA 60.104 40.000 9.22 0.00 40.56 3.27
3041 3437 5.595542 CCTCATTGGATAAGGCATTTGAGAA 59.404 40.000 9.22 0.00 38.35 2.87
3042 3438 6.097270 CCTCATTGGATAAGGCATTTGAGAAA 59.903 38.462 9.22 0.00 38.35 2.52
3043 3439 7.364056 CCTCATTGGATAAGGCATTTGAGAAAA 60.364 37.037 9.22 0.00 38.35 2.29
3044 3440 7.905265 TCATTGGATAAGGCATTTGAGAAAAA 58.095 30.769 0.00 0.00 0.00 1.94
3045 3441 7.818930 TCATTGGATAAGGCATTTGAGAAAAAC 59.181 33.333 0.00 0.00 0.00 2.43
3046 3442 6.662865 TGGATAAGGCATTTGAGAAAAACA 57.337 33.333 0.00 0.00 0.00 2.83
3047 3443 6.690530 TGGATAAGGCATTTGAGAAAAACAG 58.309 36.000 0.00 0.00 0.00 3.16
3048 3444 6.267471 TGGATAAGGCATTTGAGAAAAACAGT 59.733 34.615 0.00 0.00 0.00 3.55
3049 3445 7.154656 GGATAAGGCATTTGAGAAAAACAGTT 58.845 34.615 0.00 0.00 0.00 3.16
3050 3446 7.657354 GGATAAGGCATTTGAGAAAAACAGTTT 59.343 33.333 0.00 0.00 0.00 2.66
3051 3447 8.962884 ATAAGGCATTTGAGAAAAACAGTTTT 57.037 26.923 5.37 5.37 39.70 2.43
3064 3460 5.766150 AAACAGTTTTCATGGATCGAACA 57.234 34.783 0.00 0.00 0.00 3.18
3065 3461 5.362556 AACAGTTTTCATGGATCGAACAG 57.637 39.130 0.00 0.00 0.00 3.16
3066 3462 3.189287 ACAGTTTTCATGGATCGAACAGC 59.811 43.478 0.00 0.00 0.00 4.40
3067 3463 3.438087 CAGTTTTCATGGATCGAACAGCT 59.562 43.478 0.00 0.00 0.00 4.24
3068 3464 3.438087 AGTTTTCATGGATCGAACAGCTG 59.562 43.478 13.48 13.48 0.00 4.24
3069 3465 2.768253 TTCATGGATCGAACAGCTGT 57.232 45.000 15.25 15.25 0.00 4.40
3070 3466 2.014335 TCATGGATCGAACAGCTGTG 57.986 50.000 22.49 9.21 0.00 3.66
3071 3467 1.550072 TCATGGATCGAACAGCTGTGA 59.450 47.619 22.49 15.00 0.00 3.58
3072 3468 1.931841 CATGGATCGAACAGCTGTGAG 59.068 52.381 22.49 17.33 0.00 3.51
3073 3469 0.247460 TGGATCGAACAGCTGTGAGG 59.753 55.000 22.49 12.75 0.00 3.86
3074 3470 0.460987 GGATCGAACAGCTGTGAGGG 60.461 60.000 22.49 10.11 0.00 4.30
3075 3471 1.078848 ATCGAACAGCTGTGAGGGC 60.079 57.895 22.49 6.97 0.00 5.19
3076 3472 2.842394 ATCGAACAGCTGTGAGGGCG 62.842 60.000 22.49 18.09 34.52 6.13
3077 3473 2.031163 GAACAGCTGTGAGGGCGT 59.969 61.111 22.49 1.52 34.52 5.68
3078 3474 1.598130 GAACAGCTGTGAGGGCGTT 60.598 57.895 22.49 0.61 34.52 4.84
3079 3475 1.152963 AACAGCTGTGAGGGCGTTT 60.153 52.632 22.49 0.00 34.52 3.60
3080 3476 1.447317 AACAGCTGTGAGGGCGTTTG 61.447 55.000 22.49 0.00 34.52 2.93
3081 3477 2.980233 AGCTGTGAGGGCGTTTGC 60.980 61.111 0.00 0.00 41.71 3.68
3082 3478 2.980233 GCTGTGAGGGCGTTTGCT 60.980 61.111 0.00 0.00 42.25 3.91
3083 3479 2.949106 CTGTGAGGGCGTTTGCTG 59.051 61.111 0.00 0.00 42.25 4.41
3084 3480 2.594303 TGTGAGGGCGTTTGCTGG 60.594 61.111 0.00 0.00 42.25 4.85
3085 3481 3.365265 GTGAGGGCGTTTGCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
3086 3482 3.565214 TGAGGGCGTTTGCTGGGA 61.565 61.111 0.00 0.00 42.25 4.37
3087 3483 2.747855 GAGGGCGTTTGCTGGGAG 60.748 66.667 0.00 0.00 42.25 4.30
3088 3484 3.553095 GAGGGCGTTTGCTGGGAGT 62.553 63.158 0.00 0.00 42.25 3.85
3089 3485 2.597510 GGGCGTTTGCTGGGAGTT 60.598 61.111 0.00 0.00 42.25 3.01
3090 3486 2.626780 GGGCGTTTGCTGGGAGTTC 61.627 63.158 0.00 0.00 42.25 3.01
3091 3487 2.626780 GGCGTTTGCTGGGAGTTCC 61.627 63.158 0.00 0.00 42.25 3.62
3092 3488 1.600916 GCGTTTGCTGGGAGTTCCT 60.601 57.895 0.00 0.00 38.39 3.36
3093 3489 1.172812 GCGTTTGCTGGGAGTTCCTT 61.173 55.000 0.00 0.00 38.39 3.36
3094 3490 0.875059 CGTTTGCTGGGAGTTCCTTC 59.125 55.000 0.00 0.00 36.20 3.46
3095 3491 1.543429 CGTTTGCTGGGAGTTCCTTCT 60.543 52.381 0.00 0.00 36.20 2.85
3096 3492 2.155279 GTTTGCTGGGAGTTCCTTCTC 58.845 52.381 0.00 0.00 36.20 2.87
3097 3493 1.434188 TTGCTGGGAGTTCCTTCTCA 58.566 50.000 0.00 0.00 36.30 3.27
3098 3494 0.979665 TGCTGGGAGTTCCTTCTCAG 59.020 55.000 0.00 0.00 46.38 3.35
3099 3495 3.851051 CTGGGAGTTCCTTCTCAGC 57.149 57.895 0.00 0.00 38.74 4.26
3100 3496 0.251634 CTGGGAGTTCCTTCTCAGCC 59.748 60.000 0.00 0.00 38.74 4.85
3101 3497 0.473694 TGGGAGTTCCTTCTCAGCCA 60.474 55.000 0.00 0.00 36.30 4.75
3102 3498 0.693049 GGGAGTTCCTTCTCAGCCAA 59.307 55.000 0.00 0.00 36.30 4.52
3103 3499 1.283321 GGGAGTTCCTTCTCAGCCAAT 59.717 52.381 0.00 0.00 36.30 3.16
3104 3500 2.363683 GGAGTTCCTTCTCAGCCAATG 58.636 52.381 0.00 0.00 36.30 2.82
3105 3501 2.290577 GGAGTTCCTTCTCAGCCAATGT 60.291 50.000 0.00 0.00 36.30 2.71
3106 3502 3.416156 GAGTTCCTTCTCAGCCAATGTT 58.584 45.455 0.00 0.00 34.88 2.71
3107 3503 3.416156 AGTTCCTTCTCAGCCAATGTTC 58.584 45.455 0.00 0.00 0.00 3.18
3108 3504 3.149196 GTTCCTTCTCAGCCAATGTTCA 58.851 45.455 0.00 0.00 0.00 3.18
3109 3505 2.783135 TCCTTCTCAGCCAATGTTCAC 58.217 47.619 0.00 0.00 0.00 3.18
3110 3506 1.815003 CCTTCTCAGCCAATGTTCACC 59.185 52.381 0.00 0.00 0.00 4.02
3111 3507 2.507484 CTTCTCAGCCAATGTTCACCA 58.493 47.619 0.00 0.00 0.00 4.17
3112 3508 2.189594 TCTCAGCCAATGTTCACCAG 57.810 50.000 0.00 0.00 0.00 4.00
3113 3509 1.421268 TCTCAGCCAATGTTCACCAGT 59.579 47.619 0.00 0.00 0.00 4.00
3114 3510 2.158623 TCTCAGCCAATGTTCACCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
3115 3511 3.072330 TCTCAGCCAATGTTCACCAGTTA 59.928 43.478 0.00 0.00 0.00 2.24
3116 3512 4.012374 CTCAGCCAATGTTCACCAGTTAT 58.988 43.478 0.00 0.00 0.00 1.89
3117 3513 3.758023 TCAGCCAATGTTCACCAGTTATG 59.242 43.478 0.00 0.00 0.00 1.90
3118 3514 3.507233 CAGCCAATGTTCACCAGTTATGT 59.493 43.478 0.00 0.00 0.00 2.29
3119 3515 4.022068 CAGCCAATGTTCACCAGTTATGTT 60.022 41.667 0.00 0.00 0.00 2.71
3120 3516 4.588528 AGCCAATGTTCACCAGTTATGTTT 59.411 37.500 0.00 0.00 0.00 2.83
3121 3517 5.772672 AGCCAATGTTCACCAGTTATGTTTA 59.227 36.000 0.00 0.00 0.00 2.01
3122 3518 5.861787 GCCAATGTTCACCAGTTATGTTTAC 59.138 40.000 0.00 0.00 0.00 2.01
3123 3519 6.294508 GCCAATGTTCACCAGTTATGTTTACT 60.295 38.462 0.00 0.00 0.00 2.24
3124 3520 7.094549 GCCAATGTTCACCAGTTATGTTTACTA 60.095 37.037 0.00 0.00 0.00 1.82
3125 3521 8.788806 CCAATGTTCACCAGTTATGTTTACTAA 58.211 33.333 0.00 0.00 0.00 2.24
3128 3524 9.959721 ATGTTCACCAGTTATGTTTACTAATCT 57.040 29.630 0.00 0.00 0.00 2.40
3129 3525 9.787435 TGTTCACCAGTTATGTTTACTAATCTT 57.213 29.630 0.00 0.00 0.00 2.40
3150 3546 4.713792 TTTTTAACCCAACCCATGCATT 57.286 36.364 0.00 0.00 0.00 3.56
3151 3547 3.692257 TTTAACCCAACCCATGCATTG 57.308 42.857 0.00 0.00 0.00 2.82
3152 3548 2.612285 TAACCCAACCCATGCATTGA 57.388 45.000 0.00 0.00 0.00 2.57
3153 3549 1.955451 AACCCAACCCATGCATTGAT 58.045 45.000 0.00 0.00 0.00 2.57
3154 3550 1.955451 ACCCAACCCATGCATTGATT 58.045 45.000 0.00 0.00 0.00 2.57
3155 3551 3.113191 ACCCAACCCATGCATTGATTA 57.887 42.857 0.00 0.00 0.00 1.75
3156 3552 3.448934 ACCCAACCCATGCATTGATTAA 58.551 40.909 0.00 0.00 0.00 1.40
3157 3553 3.843027 ACCCAACCCATGCATTGATTAAA 59.157 39.130 0.00 0.00 0.00 1.52
3158 3554 4.474287 ACCCAACCCATGCATTGATTAAAT 59.526 37.500 0.00 0.00 0.00 1.40
3159 3555 5.044993 ACCCAACCCATGCATTGATTAAATT 60.045 36.000 0.00 0.00 0.00 1.82
3160 3556 6.157645 ACCCAACCCATGCATTGATTAAATTA 59.842 34.615 0.00 0.00 0.00 1.40
3161 3557 6.482973 CCCAACCCATGCATTGATTAAATTAC 59.517 38.462 0.00 0.00 0.00 1.89
3162 3558 7.046652 CCAACCCATGCATTGATTAAATTACA 58.953 34.615 0.00 0.00 0.00 2.41
3163 3559 7.551974 CCAACCCATGCATTGATTAAATTACAA 59.448 33.333 0.00 0.00 0.00 2.41
3164 3560 9.111613 CAACCCATGCATTGATTAAATTACAAT 57.888 29.630 0.00 0.00 35.10 2.71
3166 3562 8.266473 ACCCATGCATTGATTAAATTACAATGT 58.734 29.630 16.53 0.00 46.82 2.71
3167 3563 8.552865 CCCATGCATTGATTAAATTACAATGTG 58.447 33.333 16.53 10.11 46.82 3.21
3168 3564 8.065407 CCATGCATTGATTAAATTACAATGTGC 58.935 33.333 16.53 8.59 46.82 4.57
3169 3565 8.604890 CATGCATTGATTAAATTACAATGTGCA 58.395 29.630 16.53 12.75 46.82 4.57
3170 3566 8.719560 TGCATTGATTAAATTACAATGTGCAT 57.280 26.923 16.53 0.00 46.82 3.96
3171 3567 9.813446 TGCATTGATTAAATTACAATGTGCATA 57.187 25.926 16.53 0.00 46.82 3.14
3181 3577 9.872721 AAATTACAATGTGCATACAATCATTCA 57.127 25.926 0.00 0.00 40.84 2.57
3185 3581 8.861033 ACAATGTGCATACAATCATTCATTAC 57.139 30.769 0.00 0.00 40.84 1.89
3186 3582 8.468399 ACAATGTGCATACAATCATTCATTACA 58.532 29.630 0.00 0.00 40.84 2.41
3187 3583 8.964150 CAATGTGCATACAATCATTCATTACAG 58.036 33.333 0.00 0.00 40.84 2.74
3188 3584 6.497437 TGTGCATACAATCATTCATTACAGC 58.503 36.000 0.00 0.00 32.88 4.40
3189 3585 6.095160 TGTGCATACAATCATTCATTACAGCA 59.905 34.615 0.00 0.00 32.88 4.41
3190 3586 7.143340 GTGCATACAATCATTCATTACAGCAT 58.857 34.615 0.00 0.00 0.00 3.79
3191 3587 7.650504 GTGCATACAATCATTCATTACAGCATT 59.349 33.333 0.00 0.00 0.00 3.56
3192 3588 8.198778 TGCATACAATCATTCATTACAGCATTT 58.801 29.630 0.00 0.00 0.00 2.32
3193 3589 8.484799 GCATACAATCATTCATTACAGCATTTG 58.515 33.333 0.00 0.00 0.00 2.32
3194 3590 6.897259 ACAATCATTCATTACAGCATTTGC 57.103 33.333 0.00 0.00 42.49 3.68
3195 3591 5.813672 ACAATCATTCATTACAGCATTTGCC 59.186 36.000 0.00 0.00 43.38 4.52
3196 3592 5.601583 ATCATTCATTACAGCATTTGCCA 57.398 34.783 0.00 0.00 43.38 4.92
3197 3593 4.746729 TCATTCATTACAGCATTTGCCAC 58.253 39.130 0.00 0.00 43.38 5.01
3198 3594 4.220163 TCATTCATTACAGCATTTGCCACA 59.780 37.500 0.00 0.00 43.38 4.17
3199 3595 3.574284 TCATTACAGCATTTGCCACAC 57.426 42.857 0.00 0.00 43.38 3.82
3200 3596 2.889678 TCATTACAGCATTTGCCACACA 59.110 40.909 0.00 0.00 43.38 3.72
3201 3597 3.057386 TCATTACAGCATTTGCCACACAG 60.057 43.478 0.00 0.00 43.38 3.66
3202 3598 2.268762 TACAGCATTTGCCACACAGA 57.731 45.000 0.00 0.00 43.38 3.41
3203 3599 1.401761 ACAGCATTTGCCACACAGAA 58.598 45.000 0.00 0.00 43.38 3.02
3204 3600 1.067516 ACAGCATTTGCCACACAGAAC 59.932 47.619 0.00 0.00 43.38 3.01
3205 3601 0.311790 AGCATTTGCCACACAGAACG 59.688 50.000 0.00 0.00 43.38 3.95
3206 3602 0.310543 GCATTTGCCACACAGAACGA 59.689 50.000 0.00 0.00 34.31 3.85
3207 3603 1.268999 GCATTTGCCACACAGAACGAA 60.269 47.619 0.00 0.00 34.31 3.85
3208 3604 2.797792 GCATTTGCCACACAGAACGAAA 60.798 45.455 0.00 0.00 34.31 3.46
3209 3605 2.553079 TTTGCCACACAGAACGAAAC 57.447 45.000 0.00 0.00 0.00 2.78
3210 3606 1.454201 TTGCCACACAGAACGAAACA 58.546 45.000 0.00 0.00 0.00 2.83
3211 3607 0.730265 TGCCACACAGAACGAAACAC 59.270 50.000 0.00 0.00 0.00 3.32
3212 3608 1.014352 GCCACACAGAACGAAACACT 58.986 50.000 0.00 0.00 0.00 3.55
3213 3609 2.206750 GCCACACAGAACGAAACACTA 58.793 47.619 0.00 0.00 0.00 2.74
3214 3610 2.806244 GCCACACAGAACGAAACACTAT 59.194 45.455 0.00 0.00 0.00 2.12
3215 3611 3.250040 GCCACACAGAACGAAACACTATT 59.750 43.478 0.00 0.00 0.00 1.73
3216 3612 4.449743 GCCACACAGAACGAAACACTATTA 59.550 41.667 0.00 0.00 0.00 0.98
3217 3613 5.049954 GCCACACAGAACGAAACACTATTAA 60.050 40.000 0.00 0.00 0.00 1.40
3218 3614 6.348213 GCCACACAGAACGAAACACTATTAAT 60.348 38.462 0.00 0.00 0.00 1.40
3219 3615 7.148540 GCCACACAGAACGAAACACTATTAATA 60.149 37.037 0.00 0.00 0.00 0.98
3220 3616 8.714179 CCACACAGAACGAAACACTATTAATAA 58.286 33.333 0.00 0.00 0.00 1.40
3221 3617 9.741168 CACACAGAACGAAACACTATTAATAAG 57.259 33.333 0.00 0.00 0.00 1.73
3222 3618 9.701098 ACACAGAACGAAACACTATTAATAAGA 57.299 29.630 0.00 0.00 0.00 2.10
3227 3623 9.750882 GAACGAAACACTATTAATAAGAACACC 57.249 33.333 0.00 0.00 0.00 4.16
3228 3624 8.836268 ACGAAACACTATTAATAAGAACACCA 57.164 30.769 0.00 0.00 0.00 4.17
3229 3625 9.444600 ACGAAACACTATTAATAAGAACACCAT 57.555 29.630 0.00 0.00 0.00 3.55
3230 3626 9.916397 CGAAACACTATTAATAAGAACACCATC 57.084 33.333 0.00 0.00 0.00 3.51
3234 3630 9.601217 ACACTATTAATAAGAACACCATCAGAC 57.399 33.333 0.00 0.00 0.00 3.51
3235 3631 9.046296 CACTATTAATAAGAACACCATCAGACC 57.954 37.037 0.00 0.00 0.00 3.85
3236 3632 8.993424 ACTATTAATAAGAACACCATCAGACCT 58.007 33.333 0.00 0.00 0.00 3.85
3248 3644 9.975218 AACACCATCAGACCTATTAATAAAACT 57.025 29.630 0.00 0.00 0.00 2.66
3267 3663 9.715123 ATAAAACTAAACTTTGCAATTTTGTGC 57.285 25.926 11.55 0.00 45.15 4.57
3268 3664 5.733226 ACTAAACTTTGCAATTTTGTGCC 57.267 34.783 14.03 0.00 44.26 5.01
3269 3665 5.181748 ACTAAACTTTGCAATTTTGTGCCA 58.818 33.333 14.03 0.00 44.26 4.92
3270 3666 4.354071 AAACTTTGCAATTTTGTGCCAC 57.646 36.364 0.00 0.00 44.26 5.01
3271 3667 2.287769 ACTTTGCAATTTTGTGCCACC 58.712 42.857 0.00 0.00 44.26 4.61
3272 3668 1.261089 CTTTGCAATTTTGTGCCACCG 59.739 47.619 0.00 0.00 44.26 4.94
3273 3669 0.176680 TTGCAATTTTGTGCCACCGT 59.823 45.000 0.00 0.00 44.26 4.83
3274 3670 1.032794 TGCAATTTTGTGCCACCGTA 58.967 45.000 0.00 0.00 44.26 4.02
3275 3671 1.615883 TGCAATTTTGTGCCACCGTAT 59.384 42.857 0.00 0.00 44.26 3.06
3276 3672 2.036475 TGCAATTTTGTGCCACCGTATT 59.964 40.909 0.00 0.00 44.26 1.89
3277 3673 3.255888 TGCAATTTTGTGCCACCGTATTA 59.744 39.130 0.00 0.00 44.26 0.98
3278 3674 3.857093 GCAATTTTGTGCCACCGTATTAG 59.143 43.478 0.00 0.00 38.66 1.73
3279 3675 3.775661 ATTTTGTGCCACCGTATTAGC 57.224 42.857 0.00 0.00 0.00 3.09
3280 3676 2.483014 TTTGTGCCACCGTATTAGCT 57.517 45.000 0.00 0.00 0.00 3.32
3281 3677 2.483014 TTGTGCCACCGTATTAGCTT 57.517 45.000 0.00 0.00 0.00 3.74
3282 3678 2.483014 TGTGCCACCGTATTAGCTTT 57.517 45.000 0.00 0.00 0.00 3.51
3283 3679 2.352388 TGTGCCACCGTATTAGCTTTC 58.648 47.619 0.00 0.00 0.00 2.62
3284 3680 1.669265 GTGCCACCGTATTAGCTTTCC 59.331 52.381 0.00 0.00 0.00 3.13
3285 3681 1.557832 TGCCACCGTATTAGCTTTCCT 59.442 47.619 0.00 0.00 0.00 3.36
3286 3682 2.767394 TGCCACCGTATTAGCTTTCCTA 59.233 45.455 0.00 0.00 0.00 2.94
3287 3683 3.129109 GCCACCGTATTAGCTTTCCTAC 58.871 50.000 0.00 0.00 0.00 3.18
3288 3684 3.181468 GCCACCGTATTAGCTTTCCTACT 60.181 47.826 0.00 0.00 0.00 2.57
3289 3685 4.038402 GCCACCGTATTAGCTTTCCTACTA 59.962 45.833 0.00 0.00 0.00 1.82
3290 3686 5.452356 GCCACCGTATTAGCTTTCCTACTAA 60.452 44.000 0.00 0.00 33.17 2.24
3291 3687 6.740681 GCCACCGTATTAGCTTTCCTACTAAT 60.741 42.308 0.00 0.00 41.01 1.73
3292 3688 7.524367 GCCACCGTATTAGCTTTCCTACTAATA 60.524 40.741 0.00 0.00 39.29 0.98
3293 3689 8.529476 CCACCGTATTAGCTTTCCTACTAATAT 58.471 37.037 0.00 0.00 41.16 1.28
3294 3690 9.924650 CACCGTATTAGCTTTCCTACTAATATT 57.075 33.333 0.00 0.00 41.16 1.28
3295 3691 9.924650 ACCGTATTAGCTTTCCTACTAATATTG 57.075 33.333 0.00 4.03 41.16 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 77 6.139679 ACAGAGGATTTTACCCAGATTCAA 57.860 37.500 0.00 0.00 0.00 2.69
69 78 5.339200 GGACAGAGGATTTTACCCAGATTCA 60.339 44.000 0.00 0.00 0.00 2.57
73 82 2.500098 CGGACAGAGGATTTTACCCAGA 59.500 50.000 0.00 0.00 0.00 3.86
121 130 6.459848 GCATATCTCGTAATAGGCGTCCTAAT 60.460 42.308 9.24 4.63 39.77 1.73
126 135 3.436496 GGCATATCTCGTAATAGGCGTC 58.564 50.000 9.22 0.00 39.25 5.19
129 138 2.426024 TCCGGCATATCTCGTAATAGGC 59.574 50.000 0.00 7.57 38.00 3.93
134 143 7.818997 ATTCTATATCCGGCATATCTCGTAA 57.181 36.000 0.00 0.00 0.00 3.18
138 147 7.492524 TGTCAATTCTATATCCGGCATATCTC 58.507 38.462 0.00 0.00 0.00 2.75
155 164 2.618053 CGGTGACCCTACTGTCAATTC 58.382 52.381 0.00 0.00 46.17 2.17
158 167 0.178955 TCCGGTGACCCTACTGTCAA 60.179 55.000 0.00 0.00 46.17 3.18
159 168 0.611062 CTCCGGTGACCCTACTGTCA 60.611 60.000 0.00 0.00 42.75 3.58
165 174 2.948354 TCCCCTCCGGTGACCCTA 60.948 66.667 4.76 0.00 0.00 3.53
239 248 1.460689 AGGTCGACTCCCAAACCCA 60.461 57.895 16.46 0.00 31.91 4.51
315 324 8.757164 ATTAAAAACCAAAAATTAGAGCTCCG 57.243 30.769 10.93 0.00 0.00 4.63
383 393 9.226606 AGACATTCTGTATAAACCGAAAATTCA 57.773 29.630 0.00 0.00 33.32 2.57
442 452 2.357760 TTTGGGCACGGTAGTCGC 60.358 61.111 0.00 0.00 43.89 5.19
567 577 2.358957 CAATCGTCCCAGCATCTCAAA 58.641 47.619 0.00 0.00 0.00 2.69
717 730 2.615391 TCTTGTGACATAGGGTGTGGA 58.385 47.619 0.00 0.00 42.36 4.02
718 731 3.417069 TTCTTGTGACATAGGGTGTGG 57.583 47.619 0.00 0.00 42.36 4.17
719 732 7.726216 TCTATATTCTTGTGACATAGGGTGTG 58.274 38.462 0.00 0.00 42.36 3.82
720 733 7.914427 TCTATATTCTTGTGACATAGGGTGT 57.086 36.000 0.00 0.00 45.83 4.16
723 736 9.212641 CATGTTCTATATTCTTGTGACATAGGG 57.787 37.037 0.00 0.00 0.00 3.53
724 737 9.987272 TCATGTTCTATATTCTTGTGACATAGG 57.013 33.333 0.00 0.00 0.00 2.57
804 821 9.180678 CCGATAAATAATAAAAACAGACATGGC 57.819 33.333 0.00 0.00 0.00 4.40
812 829 7.411274 CGAGGTGCCGATAAATAATAAAAACA 58.589 34.615 0.00 0.00 0.00 2.83
813 830 6.358822 GCGAGGTGCCGATAAATAATAAAAAC 59.641 38.462 0.00 0.00 37.76 2.43
875 892 2.092323 GCTTGTGTTAGGTTGGGATCC 58.908 52.381 1.92 1.92 0.00 3.36
989 1006 2.806288 GCGAGACATTGCGTGTATTT 57.194 45.000 0.00 0.00 42.36 1.40
1089 1106 0.315568 GGAAGGAGCTCGACGCATAT 59.684 55.000 7.83 0.00 42.61 1.78
1092 1109 2.676822 AGGAAGGAGCTCGACGCA 60.677 61.111 7.83 0.00 42.61 5.24
1134 1151 4.000620 TCCGGGCTGTAGGGGTCA 62.001 66.667 0.00 0.00 0.00 4.02
1260 1277 3.138930 GAGCAGCCGCGTCATCCTA 62.139 63.158 4.92 0.00 45.49 2.94
1480 1497 1.099879 GCGCCAAGCCTCATGAGAAT 61.100 55.000 24.62 9.01 40.81 2.40
1608 1626 4.023707 GGTTTTGTCAGTGACATCAAGAGG 60.024 45.833 25.97 0.00 42.40 3.69
1609 1627 4.576053 TGGTTTTGTCAGTGACATCAAGAG 59.424 41.667 25.97 0.00 42.40 2.85
1614 1632 4.037923 ACCATTGGTTTTGTCAGTGACATC 59.962 41.667 25.97 17.91 35.83 3.06
1978 1996 0.235926 GACGGTGCTGTTCTTGAAGC 59.764 55.000 0.00 0.00 39.96 3.86
2098 2116 4.813526 CCTCGTCGCCGTCGTCAG 62.814 72.222 3.41 0.00 36.96 3.51
2135 2153 3.767806 CGCCTGAGCAGCTCCTCA 61.768 66.667 20.16 7.25 39.42 3.86
2368 2396 2.875933 TGCAAAGCAACTGTGTACTACC 59.124 45.455 0.00 0.00 34.76 3.18
2398 2438 1.375396 CGGACCATTGCGACTTGGA 60.375 57.895 0.28 0.00 39.29 3.53
2423 2463 5.221925 ACAATTTGGATCTAGCGTCCCATAT 60.222 40.000 10.41 2.20 34.76 1.78
2427 2467 2.872858 GACAATTTGGATCTAGCGTCCC 59.127 50.000 10.41 0.00 34.76 4.46
2436 2476 5.064834 GGAAGTAGAACGGACAATTTGGATC 59.935 44.000 0.78 0.00 0.00 3.36
2444 2484 5.471556 TGTAATGGAAGTAGAACGGACAA 57.528 39.130 0.00 0.00 0.00 3.18
2445 2485 5.670792 ATGTAATGGAAGTAGAACGGACA 57.329 39.130 0.00 0.00 0.00 4.02
2446 2486 6.980051 AAATGTAATGGAAGTAGAACGGAC 57.020 37.500 0.00 0.00 0.00 4.79
2447 2487 7.989416 AAAAATGTAATGGAAGTAGAACGGA 57.011 32.000 0.00 0.00 0.00 4.69
2470 2510 8.217188 TGTAATGGAAGTAGTACCCCTAAAAA 57.783 34.615 9.83 0.00 0.00 1.94
2471 2511 7.092757 CCTGTAATGGAAGTAGTACCCCTAAAA 60.093 40.741 9.83 0.00 0.00 1.52
2472 2512 6.384886 CCTGTAATGGAAGTAGTACCCCTAAA 59.615 42.308 9.83 0.00 0.00 1.85
2473 2513 5.901276 CCTGTAATGGAAGTAGTACCCCTAA 59.099 44.000 9.83 0.00 0.00 2.69
2474 2514 5.461327 CCTGTAATGGAAGTAGTACCCCTA 58.539 45.833 9.83 0.00 0.00 3.53
2475 2515 4.296056 CCTGTAATGGAAGTAGTACCCCT 58.704 47.826 9.83 0.00 0.00 4.79
2476 2516 3.181457 GCCTGTAATGGAAGTAGTACCCC 60.181 52.174 0.00 0.00 0.00 4.95
2477 2517 3.453353 TGCCTGTAATGGAAGTAGTACCC 59.547 47.826 0.00 0.00 0.00 3.69
2478 2518 4.748277 TGCCTGTAATGGAAGTAGTACC 57.252 45.455 0.00 0.00 0.00 3.34
2479 2519 5.914033 TGATGCCTGTAATGGAAGTAGTAC 58.086 41.667 0.00 0.00 0.00 2.73
2480 2520 6.553953 TTGATGCCTGTAATGGAAGTAGTA 57.446 37.500 0.00 0.00 0.00 1.82
2481 2521 5.435686 TTGATGCCTGTAATGGAAGTAGT 57.564 39.130 0.00 0.00 0.00 2.73
2482 2522 6.319658 ACAATTGATGCCTGTAATGGAAGTAG 59.680 38.462 13.59 0.00 0.00 2.57
2483 2523 6.186957 ACAATTGATGCCTGTAATGGAAGTA 58.813 36.000 13.59 0.00 0.00 2.24
2484 2524 5.018809 ACAATTGATGCCTGTAATGGAAGT 58.981 37.500 13.59 0.00 0.00 3.01
2485 2525 5.587388 ACAATTGATGCCTGTAATGGAAG 57.413 39.130 13.59 0.00 0.00 3.46
2486 2526 5.999205 AACAATTGATGCCTGTAATGGAA 57.001 34.783 13.59 0.00 0.00 3.53
2487 2527 5.999205 AAACAATTGATGCCTGTAATGGA 57.001 34.783 13.59 0.00 0.00 3.41
2488 2528 6.702723 CCATAAACAATTGATGCCTGTAATGG 59.297 38.462 13.59 7.68 33.73 3.16
2489 2529 7.436080 GTCCATAAACAATTGATGCCTGTAATG 59.564 37.037 13.59 2.90 0.00 1.90
2490 2530 7.342799 AGTCCATAAACAATTGATGCCTGTAAT 59.657 33.333 13.59 0.00 0.00 1.89
2491 2531 6.663093 AGTCCATAAACAATTGATGCCTGTAA 59.337 34.615 13.59 0.00 0.00 2.41
2492 2532 6.186957 AGTCCATAAACAATTGATGCCTGTA 58.813 36.000 13.59 0.00 0.00 2.74
2493 2533 5.018809 AGTCCATAAACAATTGATGCCTGT 58.981 37.500 13.59 0.00 0.00 4.00
2494 2534 5.359009 AGAGTCCATAAACAATTGATGCCTG 59.641 40.000 13.59 2.97 0.00 4.85
2495 2535 5.513233 AGAGTCCATAAACAATTGATGCCT 58.487 37.500 13.59 4.42 0.00 4.75
2496 2536 5.591877 AGAGAGTCCATAAACAATTGATGCC 59.408 40.000 13.59 0.00 0.00 4.40
2497 2537 6.690194 AGAGAGTCCATAAACAATTGATGC 57.310 37.500 13.59 0.00 0.00 3.91
2498 2538 9.994432 GTTAAGAGAGTCCATAAACAATTGATG 57.006 33.333 13.59 5.54 0.00 3.07
2499 2539 8.883731 CGTTAAGAGAGTCCATAAACAATTGAT 58.116 33.333 13.59 0.00 0.00 2.57
2500 2540 7.876068 ACGTTAAGAGAGTCCATAAACAATTGA 59.124 33.333 13.59 0.00 0.00 2.57
2501 2541 8.029642 ACGTTAAGAGAGTCCATAAACAATTG 57.970 34.615 3.24 3.24 0.00 2.32
2502 2542 8.617290 AACGTTAAGAGAGTCCATAAACAATT 57.383 30.769 0.00 0.00 0.00 2.32
2503 2543 8.617290 AAACGTTAAGAGAGTCCATAAACAAT 57.383 30.769 0.00 0.00 0.00 2.71
2504 2544 8.441312 AAAACGTTAAGAGAGTCCATAAACAA 57.559 30.769 0.00 0.00 0.00 2.83
2505 2545 8.441312 AAAAACGTTAAGAGAGTCCATAAACA 57.559 30.769 0.00 0.00 0.00 2.83
2527 2567 2.100087 GAGTCCACCCGCAAAAGAAAAA 59.900 45.455 0.00 0.00 0.00 1.94
2528 2568 1.679153 GAGTCCACCCGCAAAAGAAAA 59.321 47.619 0.00 0.00 0.00 2.29
2529 2569 1.133915 AGAGTCCACCCGCAAAAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
2530 2570 0.472471 AGAGTCCACCCGCAAAAGAA 59.528 50.000 0.00 0.00 0.00 2.52
2531 2571 0.034896 GAGAGTCCACCCGCAAAAGA 59.965 55.000 0.00 0.00 0.00 2.52
2532 2572 0.035458 AGAGAGTCCACCCGCAAAAG 59.965 55.000 0.00 0.00 0.00 2.27
2533 2573 0.472471 AAGAGAGTCCACCCGCAAAA 59.528 50.000 0.00 0.00 0.00 2.44
2534 2574 1.275291 CTAAGAGAGTCCACCCGCAAA 59.725 52.381 0.00 0.00 0.00 3.68
2535 2575 0.895530 CTAAGAGAGTCCACCCGCAA 59.104 55.000 0.00 0.00 0.00 4.85
2536 2576 0.970937 CCTAAGAGAGTCCACCCGCA 60.971 60.000 0.00 0.00 0.00 5.69
2537 2577 1.817209 CCTAAGAGAGTCCACCCGC 59.183 63.158 0.00 0.00 0.00 6.13
2538 2578 1.677637 GGCCTAAGAGAGTCCACCCG 61.678 65.000 0.00 0.00 0.00 5.28
2539 2579 0.325765 AGGCCTAAGAGAGTCCACCC 60.326 60.000 1.29 0.00 0.00 4.61
2540 2580 1.208293 CAAGGCCTAAGAGAGTCCACC 59.792 57.143 5.16 0.00 0.00 4.61
2541 2581 1.903183 ACAAGGCCTAAGAGAGTCCAC 59.097 52.381 5.16 0.00 0.00 4.02
2542 2582 2.327325 ACAAGGCCTAAGAGAGTCCA 57.673 50.000 5.16 0.00 0.00 4.02
2543 2583 3.339141 CAAACAAGGCCTAAGAGAGTCC 58.661 50.000 5.16 0.00 0.00 3.85
2544 2584 3.008049 TCCAAACAAGGCCTAAGAGAGTC 59.992 47.826 5.16 0.00 0.00 3.36
2545 2585 2.979678 TCCAAACAAGGCCTAAGAGAGT 59.020 45.455 5.16 0.00 0.00 3.24
2546 2586 3.339141 GTCCAAACAAGGCCTAAGAGAG 58.661 50.000 5.16 0.00 0.00 3.20
2547 2587 2.289444 CGTCCAAACAAGGCCTAAGAGA 60.289 50.000 5.16 0.00 0.00 3.10
2548 2588 2.076863 CGTCCAAACAAGGCCTAAGAG 58.923 52.381 5.16 0.00 0.00 2.85
2549 2589 1.418637 ACGTCCAAACAAGGCCTAAGA 59.581 47.619 5.16 0.00 0.00 2.10
2550 2590 1.535462 CACGTCCAAACAAGGCCTAAG 59.465 52.381 5.16 4.24 0.00 2.18
2578 2618 4.207955 GGTCATCCTTTCCCTGGAAATAC 58.792 47.826 11.58 5.96 42.34 1.89
2593 2633 3.393941 AGAATCTTCCATCCTGGTCATCC 59.606 47.826 0.00 0.00 39.03 3.51
2610 2650 7.309194 CCCGGGATTATAATTTGACCAAGAATC 60.309 40.741 18.48 0.00 0.00 2.52
2616 2656 3.722627 TCCCCGGGATTATAATTTGACCA 59.277 43.478 26.32 0.00 0.00 4.02
2627 2667 4.167113 TCATCTGAATTTTCCCCGGGATTA 59.833 41.667 26.32 3.53 0.00 1.75
2675 3061 4.180946 CCTCGCTCACTCCCGACG 62.181 72.222 0.00 0.00 0.00 5.12
2679 3065 3.775654 CACCCCTCGCTCACTCCC 61.776 72.222 0.00 0.00 0.00 4.30
2681 3067 3.775654 CCCACCCCTCGCTCACTC 61.776 72.222 0.00 0.00 0.00 3.51
2781 3176 2.292794 TTTTCTCGGCCCGATCCTCG 62.293 60.000 6.16 0.00 40.07 4.63
2783 3178 1.221021 GTTTTCTCGGCCCGATCCT 59.779 57.895 6.16 0.00 34.61 3.24
2794 3189 1.019805 CGAAGCCCCGAGGTTTTCTC 61.020 60.000 0.00 0.00 36.59 2.87
2927 3323 1.736645 CATTCTCGCCCGTGAACGT 60.737 57.895 7.25 0.00 37.74 3.99
2928 3324 1.445410 TCATTCTCGCCCGTGAACG 60.445 57.895 7.25 0.00 39.44 3.95
2929 3325 0.669318 TGTCATTCTCGCCCGTGAAC 60.669 55.000 7.25 0.00 31.71 3.18
2930 3326 0.249120 ATGTCATTCTCGCCCGTGAA 59.751 50.000 7.50 7.50 33.14 3.18
2931 3327 0.249120 AATGTCATTCTCGCCCGTGA 59.751 50.000 0.00 0.00 0.00 4.35
2932 3328 1.086696 AAATGTCATTCTCGCCCGTG 58.913 50.000 0.00 0.00 0.00 4.94
2933 3329 2.277084 GTAAATGTCATTCTCGCCCGT 58.723 47.619 0.00 0.00 0.00 5.28
2934 3330 2.276201 TGTAAATGTCATTCTCGCCCG 58.724 47.619 0.00 0.00 0.00 6.13
2935 3331 4.695217 TTTGTAAATGTCATTCTCGCCC 57.305 40.909 0.00 0.00 0.00 6.13
2936 3332 5.938322 TCTTTTGTAAATGTCATTCTCGCC 58.062 37.500 0.00 0.00 0.00 5.54
2937 3333 8.452989 AAATCTTTTGTAAATGTCATTCTCGC 57.547 30.769 0.00 0.00 0.00 5.03
2938 3334 9.065871 GGAAATCTTTTGTAAATGTCATTCTCG 57.934 33.333 0.00 0.00 0.00 4.04
2939 3335 9.912634 TGGAAATCTTTTGTAAATGTCATTCTC 57.087 29.630 0.00 0.00 0.00 2.87
2942 3338 8.938906 GCATGGAAATCTTTTGTAAATGTCATT 58.061 29.630 0.00 0.00 0.00 2.57
2943 3339 8.095792 TGCATGGAAATCTTTTGTAAATGTCAT 58.904 29.630 0.00 0.00 0.00 3.06
2944 3340 7.440198 TGCATGGAAATCTTTTGTAAATGTCA 58.560 30.769 0.00 0.00 0.00 3.58
2945 3341 7.887996 TGCATGGAAATCTTTTGTAAATGTC 57.112 32.000 0.00 0.00 0.00 3.06
2946 3342 8.851541 ATTGCATGGAAATCTTTTGTAAATGT 57.148 26.923 2.94 0.00 0.00 2.71
2995 3391 9.241919 TGAGGAATAGACATGCTAATTTGAAAA 57.758 29.630 0.00 0.00 31.66 2.29
2996 3392 8.806429 TGAGGAATAGACATGCTAATTTGAAA 57.194 30.769 0.00 0.00 31.66 2.69
2997 3393 8.985315 ATGAGGAATAGACATGCTAATTTGAA 57.015 30.769 0.00 0.00 31.66 2.69
2998 3394 8.843262 CAATGAGGAATAGACATGCTAATTTGA 58.157 33.333 0.00 0.00 31.66 2.69
2999 3395 8.080417 CCAATGAGGAATAGACATGCTAATTTG 58.920 37.037 0.00 0.00 41.22 2.32
3000 3396 8.000709 TCCAATGAGGAATAGACATGCTAATTT 58.999 33.333 0.00 0.00 45.65 1.82
3001 3397 7.520798 TCCAATGAGGAATAGACATGCTAATT 58.479 34.615 0.00 0.00 45.65 1.40
3002 3398 7.083062 TCCAATGAGGAATAGACATGCTAAT 57.917 36.000 0.00 0.00 45.65 1.73
3003 3399 6.499106 TCCAATGAGGAATAGACATGCTAA 57.501 37.500 0.00 0.00 45.65 3.09
3017 3413 5.135383 TCTCAAATGCCTTATCCAATGAGG 58.865 41.667 0.00 0.00 38.95 3.86
3018 3414 6.704289 TTCTCAAATGCCTTATCCAATGAG 57.296 37.500 0.00 0.00 34.33 2.90
3019 3415 7.479352 TTTTCTCAAATGCCTTATCCAATGA 57.521 32.000 0.00 0.00 0.00 2.57
3020 3416 7.603404 TGTTTTTCTCAAATGCCTTATCCAATG 59.397 33.333 0.00 0.00 0.00 2.82
3021 3417 7.678837 TGTTTTTCTCAAATGCCTTATCCAAT 58.321 30.769 0.00 0.00 0.00 3.16
3022 3418 7.060383 TGTTTTTCTCAAATGCCTTATCCAA 57.940 32.000 0.00 0.00 0.00 3.53
3023 3419 6.267471 ACTGTTTTTCTCAAATGCCTTATCCA 59.733 34.615 0.00 0.00 0.00 3.41
3024 3420 6.691508 ACTGTTTTTCTCAAATGCCTTATCC 58.308 36.000 0.00 0.00 0.00 2.59
3025 3421 8.593492 AAACTGTTTTTCTCAAATGCCTTATC 57.407 30.769 0.00 0.00 0.00 1.75
3026 3422 8.962884 AAAACTGTTTTTCTCAAATGCCTTAT 57.037 26.923 12.50 0.00 27.97 1.73
3027 3423 8.419076 GAAAACTGTTTTTCTCAAATGCCTTA 57.581 30.769 18.58 0.00 44.99 2.69
3028 3424 7.307493 GAAAACTGTTTTTCTCAAATGCCTT 57.693 32.000 18.58 0.00 44.99 4.35
3029 3425 6.908870 GAAAACTGTTTTTCTCAAATGCCT 57.091 33.333 18.58 0.00 44.99 4.75
3040 3436 6.568869 TGTTCGATCCATGAAAACTGTTTTT 58.431 32.000 18.58 2.92 37.65 1.94
3041 3437 6.142818 TGTTCGATCCATGAAAACTGTTTT 57.857 33.333 17.71 17.71 35.12 2.43
3042 3438 5.762045 CTGTTCGATCCATGAAAACTGTTT 58.238 37.500 0.00 0.00 0.00 2.83
3043 3439 4.320494 GCTGTTCGATCCATGAAAACTGTT 60.320 41.667 0.00 0.00 0.00 3.16
3044 3440 3.189287 GCTGTTCGATCCATGAAAACTGT 59.811 43.478 0.00 0.00 0.00 3.55
3045 3441 3.438087 AGCTGTTCGATCCATGAAAACTG 59.562 43.478 0.00 0.00 0.00 3.16
3046 3442 3.438087 CAGCTGTTCGATCCATGAAAACT 59.562 43.478 5.25 0.00 0.00 2.66
3047 3443 3.189287 ACAGCTGTTCGATCCATGAAAAC 59.811 43.478 15.25 0.00 0.00 2.43
3048 3444 3.189080 CACAGCTGTTCGATCCATGAAAA 59.811 43.478 18.94 0.00 0.00 2.29
3049 3445 2.743664 CACAGCTGTTCGATCCATGAAA 59.256 45.455 18.94 0.00 0.00 2.69
3050 3446 2.028203 TCACAGCTGTTCGATCCATGAA 60.028 45.455 18.94 0.00 0.00 2.57
3051 3447 1.550072 TCACAGCTGTTCGATCCATGA 59.450 47.619 18.94 5.10 0.00 3.07
3052 3448 1.931841 CTCACAGCTGTTCGATCCATG 59.068 52.381 18.94 2.36 0.00 3.66
3053 3449 1.134580 CCTCACAGCTGTTCGATCCAT 60.135 52.381 18.94 0.00 0.00 3.41
3054 3450 0.247460 CCTCACAGCTGTTCGATCCA 59.753 55.000 18.94 0.00 0.00 3.41
3055 3451 0.460987 CCCTCACAGCTGTTCGATCC 60.461 60.000 18.94 0.00 0.00 3.36
3056 3452 1.086634 GCCCTCACAGCTGTTCGATC 61.087 60.000 18.94 2.91 0.00 3.69
3057 3453 1.078848 GCCCTCACAGCTGTTCGAT 60.079 57.895 18.94 0.00 0.00 3.59
3058 3454 2.343758 GCCCTCACAGCTGTTCGA 59.656 61.111 18.94 11.81 0.00 3.71
3059 3455 3.114616 CGCCCTCACAGCTGTTCG 61.115 66.667 18.94 10.93 0.00 3.95
3060 3456 1.166531 AAACGCCCTCACAGCTGTTC 61.167 55.000 18.94 3.28 0.00 3.18
3061 3457 1.152963 AAACGCCCTCACAGCTGTT 60.153 52.632 18.94 0.00 0.00 3.16
3062 3458 1.893808 CAAACGCCCTCACAGCTGT 60.894 57.895 15.25 15.25 0.00 4.40
3063 3459 2.949106 CAAACGCCCTCACAGCTG 59.051 61.111 13.48 13.48 0.00 4.24
3064 3460 2.980233 GCAAACGCCCTCACAGCT 60.980 61.111 0.00 0.00 0.00 4.24
3065 3461 2.980233 AGCAAACGCCCTCACAGC 60.980 61.111 0.00 0.00 0.00 4.40
3066 3462 2.620112 CCAGCAAACGCCCTCACAG 61.620 63.158 0.00 0.00 0.00 3.66
3067 3463 2.594303 CCAGCAAACGCCCTCACA 60.594 61.111 0.00 0.00 0.00 3.58
3068 3464 3.365265 CCCAGCAAACGCCCTCAC 61.365 66.667 0.00 0.00 0.00 3.51
3069 3465 3.551496 CTCCCAGCAAACGCCCTCA 62.551 63.158 0.00 0.00 0.00 3.86
3070 3466 2.747855 CTCCCAGCAAACGCCCTC 60.748 66.667 0.00 0.00 0.00 4.30
3071 3467 3.133365 AACTCCCAGCAAACGCCCT 62.133 57.895 0.00 0.00 0.00 5.19
3072 3468 2.597510 AACTCCCAGCAAACGCCC 60.598 61.111 0.00 0.00 0.00 6.13
3073 3469 2.626780 GGAACTCCCAGCAAACGCC 61.627 63.158 0.00 0.00 34.14 5.68
3074 3470 1.172812 AAGGAACTCCCAGCAAACGC 61.173 55.000 0.00 0.00 38.49 4.84
3075 3471 0.875059 GAAGGAACTCCCAGCAAACG 59.125 55.000 0.00 0.00 38.49 3.60
3076 3472 2.155279 GAGAAGGAACTCCCAGCAAAC 58.845 52.381 0.00 0.00 38.49 2.93
3077 3473 1.774254 TGAGAAGGAACTCCCAGCAAA 59.226 47.619 0.00 0.00 38.49 3.68
3078 3474 1.349026 CTGAGAAGGAACTCCCAGCAA 59.651 52.381 0.00 0.00 38.49 3.91
3079 3475 0.979665 CTGAGAAGGAACTCCCAGCA 59.020 55.000 0.00 0.00 38.49 4.41
3080 3476 0.392327 GCTGAGAAGGAACTCCCAGC 60.392 60.000 8.40 8.40 43.48 4.85
3081 3477 0.251634 GGCTGAGAAGGAACTCCCAG 59.748 60.000 0.00 0.00 38.49 4.45
3082 3478 0.473694 TGGCTGAGAAGGAACTCCCA 60.474 55.000 0.00 0.00 38.49 4.37
3083 3479 0.693049 TTGGCTGAGAAGGAACTCCC 59.307 55.000 0.00 0.00 38.49 4.30
3084 3480 2.290577 ACATTGGCTGAGAAGGAACTCC 60.291 50.000 0.00 0.00 38.49 3.85
3085 3481 3.064900 ACATTGGCTGAGAAGGAACTC 57.935 47.619 0.00 0.00 38.49 3.01
3087 3483 3.057946 GTGAACATTGGCTGAGAAGGAAC 60.058 47.826 0.00 0.00 0.00 3.62
3088 3484 3.149196 GTGAACATTGGCTGAGAAGGAA 58.851 45.455 0.00 0.00 0.00 3.36
3089 3485 2.553028 GGTGAACATTGGCTGAGAAGGA 60.553 50.000 0.00 0.00 0.00 3.36
3090 3486 1.815003 GGTGAACATTGGCTGAGAAGG 59.185 52.381 0.00 0.00 0.00 3.46
3091 3487 2.486982 CTGGTGAACATTGGCTGAGAAG 59.513 50.000 0.00 0.00 0.00 2.85
3092 3488 2.158623 ACTGGTGAACATTGGCTGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
3093 3489 1.421268 ACTGGTGAACATTGGCTGAGA 59.579 47.619 0.00 0.00 0.00 3.27
3094 3490 1.901591 ACTGGTGAACATTGGCTGAG 58.098 50.000 0.00 0.00 0.00 3.35
3095 3491 2.363306 AACTGGTGAACATTGGCTGA 57.637 45.000 0.00 0.00 0.00 4.26
3096 3492 3.507233 ACATAACTGGTGAACATTGGCTG 59.493 43.478 0.00 0.00 0.00 4.85
3097 3493 3.766545 ACATAACTGGTGAACATTGGCT 58.233 40.909 0.00 0.00 0.00 4.75
3098 3494 4.519540 AACATAACTGGTGAACATTGGC 57.480 40.909 0.00 0.00 0.00 4.52
3099 3495 7.214467 AGTAAACATAACTGGTGAACATTGG 57.786 36.000 0.00 0.00 0.00 3.16
3102 3498 9.959721 AGATTAGTAAACATAACTGGTGAACAT 57.040 29.630 0.00 0.00 0.00 2.71
3103 3499 9.787435 AAGATTAGTAAACATAACTGGTGAACA 57.213 29.630 0.00 0.00 0.00 3.18
3129 3525 4.103153 TCAATGCATGGGTTGGGTTAAAAA 59.897 37.500 0.00 0.00 0.00 1.94
3130 3526 3.648067 TCAATGCATGGGTTGGGTTAAAA 59.352 39.130 0.00 0.00 0.00 1.52
3131 3527 3.242867 TCAATGCATGGGTTGGGTTAAA 58.757 40.909 0.00 0.00 0.00 1.52
3132 3528 2.894731 TCAATGCATGGGTTGGGTTAA 58.105 42.857 0.00 0.00 0.00 2.01
3133 3529 2.612285 TCAATGCATGGGTTGGGTTA 57.388 45.000 0.00 0.00 0.00 2.85
3134 3530 1.955451 ATCAATGCATGGGTTGGGTT 58.045 45.000 0.00 0.00 0.00 4.11
3135 3531 1.955451 AATCAATGCATGGGTTGGGT 58.045 45.000 0.00 0.00 0.00 4.51
3136 3532 4.484537 TTTAATCAATGCATGGGTTGGG 57.515 40.909 10.02 0.00 0.00 4.12
3137 3533 7.046652 TGTAATTTAATCAATGCATGGGTTGG 58.953 34.615 10.02 0.00 0.00 3.77
3138 3534 8.489990 TTGTAATTTAATCAATGCATGGGTTG 57.510 30.769 10.02 0.28 0.00 3.77
3139 3535 9.111613 CATTGTAATTTAATCAATGCATGGGTT 57.888 29.630 4.65 4.65 40.78 4.11
3140 3536 8.266473 ACATTGTAATTTAATCAATGCATGGGT 58.734 29.630 15.02 0.00 46.79 4.51
3141 3537 8.552865 CACATTGTAATTTAATCAATGCATGGG 58.447 33.333 15.02 0.00 46.79 4.00
3142 3538 8.065407 GCACATTGTAATTTAATCAATGCATGG 58.935 33.333 15.02 0.00 46.79 3.66
3143 3539 8.604890 TGCACATTGTAATTTAATCAATGCATG 58.395 29.630 15.02 10.24 46.79 4.06
3144 3540 8.719560 TGCACATTGTAATTTAATCAATGCAT 57.280 26.923 15.02 0.00 46.79 3.96
3145 3541 8.719560 ATGCACATTGTAATTTAATCAATGCA 57.280 26.923 15.02 11.87 46.79 3.96
3155 3551 9.872721 TGAATGATTGTATGCACATTGTAATTT 57.127 25.926 4.69 0.00 33.76 1.82
3159 3555 9.949174 GTAATGAATGATTGTATGCACATTGTA 57.051 29.630 4.69 0.00 33.76 2.41
3160 3556 8.468399 TGTAATGAATGATTGTATGCACATTGT 58.532 29.630 4.69 0.00 33.76 2.71
3161 3557 8.859517 TGTAATGAATGATTGTATGCACATTG 57.140 30.769 4.69 0.00 33.76 2.82
3162 3558 7.650504 GCTGTAATGAATGATTGTATGCACATT 59.349 33.333 0.00 0.00 33.76 2.71
3163 3559 7.143340 GCTGTAATGAATGATTGTATGCACAT 58.857 34.615 0.00 0.00 33.76 3.21
3164 3560 6.095160 TGCTGTAATGAATGATTGTATGCACA 59.905 34.615 0.00 0.00 0.00 4.57
3165 3561 6.497437 TGCTGTAATGAATGATTGTATGCAC 58.503 36.000 0.00 0.00 0.00 4.57
3166 3562 6.696441 TGCTGTAATGAATGATTGTATGCA 57.304 33.333 0.00 0.00 0.00 3.96
3167 3563 8.484799 CAAATGCTGTAATGAATGATTGTATGC 58.515 33.333 0.00 0.00 0.00 3.14
3168 3564 8.484799 GCAAATGCTGTAATGAATGATTGTATG 58.515 33.333 0.00 0.00 38.21 2.39
3169 3565 7.654520 GGCAAATGCTGTAATGAATGATTGTAT 59.345 33.333 5.25 0.00 41.70 2.29
3170 3566 6.979817 GGCAAATGCTGTAATGAATGATTGTA 59.020 34.615 5.25 0.00 41.70 2.41
3171 3567 5.813672 GGCAAATGCTGTAATGAATGATTGT 59.186 36.000 5.25 0.00 41.70 2.71
3172 3568 5.813157 TGGCAAATGCTGTAATGAATGATTG 59.187 36.000 5.25 0.00 41.70 2.67
3173 3569 5.813672 GTGGCAAATGCTGTAATGAATGATT 59.186 36.000 5.25 0.00 41.70 2.57
3174 3570 5.105269 TGTGGCAAATGCTGTAATGAATGAT 60.105 36.000 5.25 0.00 41.70 2.45
3175 3571 4.220163 TGTGGCAAATGCTGTAATGAATGA 59.780 37.500 5.25 0.00 41.70 2.57
3176 3572 4.327898 GTGTGGCAAATGCTGTAATGAATG 59.672 41.667 5.25 0.00 41.70 2.67
3177 3573 4.021280 TGTGTGGCAAATGCTGTAATGAAT 60.021 37.500 5.25 0.00 41.70 2.57
3178 3574 3.320256 TGTGTGGCAAATGCTGTAATGAA 59.680 39.130 5.25 0.00 41.70 2.57
3179 3575 2.889678 TGTGTGGCAAATGCTGTAATGA 59.110 40.909 5.25 0.00 41.70 2.57
3180 3576 3.057386 TCTGTGTGGCAAATGCTGTAATG 60.057 43.478 5.25 0.00 41.70 1.90
3181 3577 3.156293 TCTGTGTGGCAAATGCTGTAAT 58.844 40.909 5.25 0.00 41.70 1.89
3182 3578 2.580962 TCTGTGTGGCAAATGCTGTAA 58.419 42.857 5.25 0.00 41.70 2.41
3183 3579 2.268762 TCTGTGTGGCAAATGCTGTA 57.731 45.000 5.25 0.00 41.70 2.74
3184 3580 1.067516 GTTCTGTGTGGCAAATGCTGT 59.932 47.619 5.25 0.00 41.70 4.40
3185 3581 1.774639 GTTCTGTGTGGCAAATGCTG 58.225 50.000 5.25 0.00 41.70 4.41
3186 3582 0.311790 CGTTCTGTGTGGCAAATGCT 59.688 50.000 5.25 0.00 41.70 3.79
3187 3583 0.310543 TCGTTCTGTGTGGCAAATGC 59.689 50.000 0.00 0.00 41.14 3.56
3188 3584 2.772568 TTCGTTCTGTGTGGCAAATG 57.227 45.000 0.00 0.00 0.00 2.32
3189 3585 2.425312 TGTTTCGTTCTGTGTGGCAAAT 59.575 40.909 0.00 0.00 0.00 2.32
3190 3586 1.813178 TGTTTCGTTCTGTGTGGCAAA 59.187 42.857 0.00 0.00 0.00 3.68
3191 3587 1.131504 GTGTTTCGTTCTGTGTGGCAA 59.868 47.619 0.00 0.00 0.00 4.52
3192 3588 0.730265 GTGTTTCGTTCTGTGTGGCA 59.270 50.000 0.00 0.00 0.00 4.92
3193 3589 1.014352 AGTGTTTCGTTCTGTGTGGC 58.986 50.000 0.00 0.00 0.00 5.01
3194 3590 6.533819 TTAATAGTGTTTCGTTCTGTGTGG 57.466 37.500 0.00 0.00 0.00 4.17
3195 3591 9.741168 CTTATTAATAGTGTTTCGTTCTGTGTG 57.259 33.333 0.00 0.00 0.00 3.82
3196 3592 9.701098 TCTTATTAATAGTGTTTCGTTCTGTGT 57.299 29.630 0.00 0.00 0.00 3.72
3201 3597 9.750882 GGTGTTCTTATTAATAGTGTTTCGTTC 57.249 33.333 0.00 0.00 0.00 3.95
3202 3598 9.275398 TGGTGTTCTTATTAATAGTGTTTCGTT 57.725 29.630 0.00 0.00 0.00 3.85
3203 3599 8.836268 TGGTGTTCTTATTAATAGTGTTTCGT 57.164 30.769 0.00 0.00 0.00 3.85
3204 3600 9.916397 GATGGTGTTCTTATTAATAGTGTTTCG 57.084 33.333 0.00 0.00 0.00 3.46
3208 3604 9.601217 GTCTGATGGTGTTCTTATTAATAGTGT 57.399 33.333 0.00 0.00 0.00 3.55
3209 3605 9.046296 GGTCTGATGGTGTTCTTATTAATAGTG 57.954 37.037 0.00 0.00 0.00 2.74
3210 3606 8.993424 AGGTCTGATGGTGTTCTTATTAATAGT 58.007 33.333 0.00 0.00 0.00 2.12
3222 3618 9.975218 AGTTTTATTAATAGGTCTGATGGTGTT 57.025 29.630 0.00 0.00 0.00 3.32
3241 3637 9.715123 GCACAAAATTGCAAAGTTTAGTTTTAT 57.285 25.926 1.71 0.00 42.83 1.40
3242 3638 8.178313 GGCACAAAATTGCAAAGTTTAGTTTTA 58.822 29.630 1.71 0.00 42.83 1.52
3243 3639 7.026562 GGCACAAAATTGCAAAGTTTAGTTTT 58.973 30.769 1.71 0.68 42.83 2.43
3244 3640 6.150140 TGGCACAAAATTGCAAAGTTTAGTTT 59.850 30.769 1.71 0.00 42.83 2.66
3245 3641 5.645497 TGGCACAAAATTGCAAAGTTTAGTT 59.355 32.000 1.71 0.00 42.83 2.24
3246 3642 5.064579 GTGGCACAAAATTGCAAAGTTTAGT 59.935 36.000 13.86 5.88 42.83 2.24
3247 3643 5.500825 GTGGCACAAAATTGCAAAGTTTAG 58.499 37.500 13.86 4.99 42.83 1.85
3248 3644 4.333926 GGTGGCACAAAATTGCAAAGTTTA 59.666 37.500 20.82 0.00 42.83 2.01
3249 3645 3.128415 GGTGGCACAAAATTGCAAAGTTT 59.872 39.130 20.82 4.32 45.95 2.66
3250 3646 2.682352 GGTGGCACAAAATTGCAAAGTT 59.318 40.909 20.82 0.00 44.94 2.66
3251 3647 2.287769 GGTGGCACAAAATTGCAAAGT 58.712 42.857 20.82 0.00 44.94 2.66
3252 3648 1.261089 CGGTGGCACAAAATTGCAAAG 59.739 47.619 20.82 0.00 44.94 2.77
3253 3649 1.293924 CGGTGGCACAAAATTGCAAA 58.706 45.000 20.82 0.00 44.94 3.68
3254 3650 0.176680 ACGGTGGCACAAAATTGCAA 59.823 45.000 20.82 0.00 44.94 4.08
3255 3651 1.032794 TACGGTGGCACAAAATTGCA 58.967 45.000 20.82 0.00 44.94 4.08
3256 3652 2.362169 ATACGGTGGCACAAAATTGC 57.638 45.000 20.82 0.00 44.16 3.56
3257 3653 3.857093 GCTAATACGGTGGCACAAAATTG 59.143 43.478 20.82 10.26 44.16 2.32
3258 3654 3.761752 AGCTAATACGGTGGCACAAAATT 59.238 39.130 20.82 16.04 44.16 1.82
3259 3655 3.352648 AGCTAATACGGTGGCACAAAAT 58.647 40.909 20.82 6.00 44.16 1.82
3260 3656 2.785562 AGCTAATACGGTGGCACAAAA 58.214 42.857 20.82 3.60 44.16 2.44
3261 3657 2.483014 AGCTAATACGGTGGCACAAA 57.517 45.000 20.82 4.00 44.16 2.83
3262 3658 2.483014 AAGCTAATACGGTGGCACAA 57.517 45.000 20.82 4.39 44.16 3.33
3263 3659 2.352388 GAAAGCTAATACGGTGGCACA 58.648 47.619 20.82 0.00 0.00 4.57
3264 3660 1.669265 GGAAAGCTAATACGGTGGCAC 59.331 52.381 9.70 9.70 0.00 5.01
3265 3661 1.557832 AGGAAAGCTAATACGGTGGCA 59.442 47.619 0.00 0.00 0.00 4.92
3266 3662 2.327200 AGGAAAGCTAATACGGTGGC 57.673 50.000 0.00 0.00 0.00 5.01
3267 3663 4.667519 AGTAGGAAAGCTAATACGGTGG 57.332 45.455 0.00 0.00 0.00 4.61
3268 3664 9.924650 AATATTAGTAGGAAAGCTAATACGGTG 57.075 33.333 6.27 0.00 40.66 4.94
3269 3665 9.924650 CAATATTAGTAGGAAAGCTAATACGGT 57.075 33.333 6.27 0.00 40.66 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.