Multiple sequence alignment - TraesCS3B01G341700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G341700 | chr3B | 100.000 | 7824 | 0 | 0 | 1 | 7824 | 548557123 | 548549300 | 0.000000e+00 | 14449.0 |
1 | TraesCS3B01G341700 | chr3B | 95.502 | 4135 | 125 | 21 | 4 | 4104 | 548376628 | 548372521 | 0.000000e+00 | 6549.0 |
2 | TraesCS3B01G341700 | chr3B | 95.779 | 3601 | 102 | 25 | 4 | 3570 | 548850524 | 548846940 | 0.000000e+00 | 5762.0 |
3 | TraesCS3B01G341700 | chr3B | 99.203 | 1506 | 11 | 1 | 5969 | 7473 | 548841707 | 548840202 | 0.000000e+00 | 2713.0 |
4 | TraesCS3B01G341700 | chr3B | 96.605 | 1620 | 45 | 6 | 4263 | 5876 | 548084278 | 548082663 | 0.000000e+00 | 2678.0 |
5 | TraesCS3B01G341700 | chr3B | 97.820 | 1422 | 26 | 3 | 6029 | 7449 | 548082443 | 548081026 | 0.000000e+00 | 2449.0 |
6 | TraesCS3B01G341700 | chr3B | 95.242 | 1387 | 41 | 13 | 4358 | 5737 | 548843165 | 548841797 | 0.000000e+00 | 2172.0 |
7 | TraesCS3B01G341700 | chr3B | 93.988 | 1314 | 50 | 6 | 4102 | 5391 | 548372418 | 548371110 | 0.000000e+00 | 1962.0 |
8 | TraesCS3B01G341700 | chr3B | 96.915 | 1005 | 25 | 4 | 6457 | 7456 | 548370251 | 548369248 | 0.000000e+00 | 1679.0 |
9 | TraesCS3B01G341700 | chr3B | 94.731 | 873 | 24 | 2 | 4102 | 4953 | 548846208 | 548845337 | 0.000000e+00 | 1338.0 |
10 | TraesCS3B01G341700 | chr3B | 95.734 | 586 | 19 | 2 | 5969 | 6551 | 548370703 | 548370121 | 0.000000e+00 | 939.0 |
11 | TraesCS3B01G341700 | chr3B | 97.575 | 536 | 13 | 0 | 3569 | 4104 | 548846846 | 548846311 | 0.000000e+00 | 918.0 |
12 | TraesCS3B01G341700 | chr3B | 94.315 | 387 | 9 | 6 | 7442 | 7824 | 548369187 | 548368810 | 1.460000e-161 | 580.0 |
13 | TraesCS3B01G341700 | chr3B | 94.215 | 363 | 10 | 5 | 7464 | 7824 | 548836045 | 548835692 | 1.920000e-150 | 544.0 |
14 | TraesCS3B01G341700 | chr3B | 96.875 | 320 | 5 | 2 | 5423 | 5737 | 548371112 | 548370793 | 1.490000e-146 | 531.0 |
15 | TraesCS3B01G341700 | chr3B | 98.010 | 201 | 4 | 0 | 3904 | 4104 | 548084963 | 548084763 | 4.490000e-92 | 350.0 |
16 | TraesCS3B01G341700 | chr3B | 84.450 | 373 | 28 | 18 | 7455 | 7824 | 548080734 | 548080389 | 2.700000e-89 | 340.0 |
17 | TraesCS3B01G341700 | chr3B | 93.382 | 136 | 9 | 0 | 4102 | 4237 | 548084662 | 548084527 | 1.330000e-47 | 202.0 |
18 | TraesCS3B01G341700 | chr3B | 97.959 | 98 | 2 | 0 | 5779 | 5876 | 548841802 | 548841705 | 3.750000e-38 | 171.0 |
19 | TraesCS3B01G341700 | chr3B | 96.939 | 98 | 3 | 0 | 5779 | 5876 | 548370798 | 548370701 | 1.750000e-36 | 165.0 |
20 | TraesCS3B01G341700 | chr3B | 92.079 | 101 | 8 | 0 | 6418 | 6518 | 548841189 | 548841089 | 8.180000e-30 | 143.0 |
21 | TraesCS3B01G341700 | chr3B | 100.000 | 63 | 0 | 0 | 5969 | 6031 | 548082665 | 548082603 | 4.960000e-22 | 117.0 |
22 | TraesCS3B01G341700 | chr3B | 100.000 | 43 | 0 | 0 | 4235 | 4277 | 548084506 | 548084464 | 6.510000e-11 | 80.5 |
23 | TraesCS3B01G341700 | chr3B | 100.000 | 39 | 0 | 0 | 2148 | 2186 | 548374349 | 548374311 | 1.090000e-08 | 73.1 |
24 | TraesCS3B01G341700 | chr3B | 100.000 | 39 | 0 | 0 | 2148 | 2186 | 548554848 | 548554810 | 1.090000e-08 | 73.1 |
25 | TraesCS3B01G341700 | chr3B | 100.000 | 39 | 0 | 0 | 2276 | 2314 | 548554976 | 548554938 | 1.090000e-08 | 73.1 |
26 | TraesCS3B01G341700 | chr3B | 100.000 | 39 | 0 | 0 | 2148 | 2186 | 548848240 | 548848202 | 1.090000e-08 | 73.1 |
27 | TraesCS3B01G341700 | chr3B | 100.000 | 39 | 0 | 0 | 2276 | 2314 | 548848368 | 548848330 | 1.090000e-08 | 73.1 |
28 | TraesCS3B01G341700 | chr3B | 97.436 | 39 | 1 | 0 | 2276 | 2314 | 548374477 | 548374439 | 5.070000e-07 | 67.6 |
29 | TraesCS3B01G341700 | chr3A | 92.824 | 3414 | 146 | 42 | 6 | 3383 | 529611483 | 529614833 | 0.000000e+00 | 4855.0 |
30 | TraesCS3B01G341700 | chr3A | 95.565 | 1646 | 55 | 9 | 5969 | 7606 | 529617942 | 529619577 | 0.000000e+00 | 2619.0 |
31 | TraesCS3B01G341700 | chr3A | 95.988 | 1620 | 49 | 9 | 4263 | 5876 | 529616335 | 529617944 | 0.000000e+00 | 2617.0 |
32 | TraesCS3B01G341700 | chr3A | 95.740 | 493 | 9 | 3 | 3612 | 4104 | 529615396 | 529615876 | 0.000000e+00 | 784.0 |
33 | TraesCS3B01G341700 | chr3A | 96.257 | 187 | 4 | 2 | 3429 | 3613 | 529615087 | 529615272 | 3.550000e-78 | 303.0 |
34 | TraesCS3B01G341700 | chr3A | 89.947 | 189 | 6 | 4 | 4102 | 4277 | 529615957 | 529616145 | 1.700000e-56 | 231.0 |
35 | TraesCS3B01G341700 | chr3A | 77.399 | 323 | 42 | 15 | 4632 | 4932 | 101888701 | 101888388 | 6.280000e-36 | 163.0 |
36 | TraesCS3B01G341700 | chr3A | 92.079 | 101 | 8 | 0 | 6487 | 6587 | 529618388 | 529618488 | 8.180000e-30 | 143.0 |
37 | TraesCS3B01G341700 | chr3A | 90.816 | 98 | 6 | 2 | 7726 | 7823 | 529619710 | 529619804 | 2.290000e-25 | 128.0 |
38 | TraesCS3B01G341700 | chr3A | 89.109 | 101 | 11 | 0 | 6418 | 6518 | 529618457 | 529618557 | 8.240000e-25 | 126.0 |
39 | TraesCS3B01G341700 | chr3A | 98.413 | 63 | 1 | 0 | 3382 | 3444 | 529614937 | 529614999 | 2.310000e-20 | 111.0 |
40 | TraesCS3B01G341700 | chr3A | 77.251 | 211 | 27 | 14 | 1999 | 2190 | 732731965 | 732732173 | 3.860000e-18 | 104.0 |
41 | TraesCS3B01G341700 | chr3A | 81.905 | 105 | 16 | 3 | 2930 | 3034 | 741863530 | 741863429 | 1.400000e-12 | 86.1 |
42 | TraesCS3B01G341700 | chr3A | 77.444 | 133 | 26 | 4 | 6227 | 6357 | 529618521 | 529618651 | 8.420000e-10 | 76.8 |
43 | TraesCS3B01G341700 | chr3A | 95.349 | 43 | 2 | 0 | 2144 | 2186 | 529613723 | 529613765 | 1.410000e-07 | 69.4 |
44 | TraesCS3B01G341700 | chr3D | 93.042 | 2199 | 91 | 25 | 4 | 2185 | 421377814 | 421375661 | 0.000000e+00 | 3157.0 |
45 | TraesCS3B01G341700 | chr3D | 93.398 | 1863 | 64 | 23 | 5969 | 7824 | 421371585 | 421369775 | 0.000000e+00 | 2704.0 |
46 | TraesCS3B01G341700 | chr3D | 97.842 | 1112 | 23 | 1 | 2272 | 3383 | 421375702 | 421374592 | 0.000000e+00 | 1919.0 |
47 | TraesCS3B01G341700 | chr3D | 94.826 | 1179 | 35 | 11 | 4706 | 5876 | 421372743 | 421371583 | 0.000000e+00 | 1816.0 |
48 | TraesCS3B01G341700 | chr3D | 93.480 | 997 | 34 | 10 | 3382 | 4355 | 421374433 | 421373445 | 0.000000e+00 | 1452.0 |
49 | TraesCS3B01G341700 | chr3D | 96.000 | 525 | 21 | 0 | 4341 | 4865 | 421373265 | 421372741 | 0.000000e+00 | 854.0 |
50 | TraesCS3B01G341700 | chr3D | 81.019 | 216 | 33 | 5 | 4722 | 4932 | 85247975 | 85248187 | 1.750000e-36 | 165.0 |
51 | TraesCS3B01G341700 | chr3D | 77.570 | 321 | 38 | 15 | 4635 | 4932 | 84907546 | 84907237 | 6.280000e-36 | 163.0 |
52 | TraesCS3B01G341700 | chr3D | 92.929 | 99 | 7 | 0 | 6418 | 6516 | 421371077 | 421370979 | 2.280000e-30 | 145.0 |
53 | TraesCS3B01G341700 | chr3D | 91.346 | 104 | 9 | 0 | 6487 | 6590 | 421371146 | 421371043 | 8.180000e-30 | 143.0 |
54 | TraesCS3B01G341700 | chr3D | 77.692 | 130 | 25 | 4 | 6233 | 6360 | 421371007 | 421370880 | 8.420000e-10 | 76.8 |
55 | TraesCS3B01G341700 | chr3D | 92.000 | 50 | 3 | 1 | 3253 | 3301 | 42889281 | 42889232 | 1.410000e-07 | 69.4 |
56 | TraesCS3B01G341700 | chr5B | 96.429 | 112 | 3 | 1 | 5874 | 5984 | 391643615 | 391643726 | 4.820000e-42 | 183.0 |
57 | TraesCS3B01G341700 | chr5B | 95.614 | 114 | 4 | 1 | 5858 | 5971 | 370044305 | 370044193 | 1.730000e-41 | 182.0 |
58 | TraesCS3B01G341700 | chr5B | 96.330 | 109 | 4 | 0 | 5867 | 5975 | 610345898 | 610345790 | 6.240000e-41 | 180.0 |
59 | TraesCS3B01G341700 | chr2B | 96.429 | 112 | 3 | 1 | 5867 | 5978 | 397939366 | 397939476 | 4.820000e-42 | 183.0 |
60 | TraesCS3B01G341700 | chr2B | 99.010 | 101 | 1 | 0 | 5871 | 5971 | 403101710 | 403101610 | 1.730000e-41 | 182.0 |
61 | TraesCS3B01G341700 | chr2B | 96.364 | 110 | 2 | 2 | 5870 | 5979 | 695410955 | 695410848 | 6.240000e-41 | 180.0 |
62 | TraesCS3B01G341700 | chr2B | 96.364 | 110 | 2 | 2 | 5870 | 5979 | 695437641 | 695437534 | 6.240000e-41 | 180.0 |
63 | TraesCS3B01G341700 | chr2B | 96.330 | 109 | 3 | 1 | 5864 | 5972 | 182935464 | 182935571 | 2.240000e-40 | 178.0 |
64 | TraesCS3B01G341700 | chr2B | 96.330 | 109 | 3 | 1 | 5868 | 5976 | 425527649 | 425527756 | 2.240000e-40 | 178.0 |
65 | TraesCS3B01G341700 | chr2B | 92.562 | 121 | 5 | 2 | 5860 | 5980 | 674033931 | 674034047 | 3.750000e-38 | 171.0 |
66 | TraesCS3B01G341700 | chr1B | 97.222 | 108 | 1 | 2 | 5875 | 5982 | 328139782 | 328139677 | 1.730000e-41 | 182.0 |
67 | TraesCS3B01G341700 | chr4B | 96.396 | 111 | 1 | 3 | 5875 | 5984 | 32922794 | 32922902 | 6.240000e-41 | 180.0 |
68 | TraesCS3B01G341700 | chr7D | 97.143 | 105 | 2 | 1 | 5874 | 5978 | 5023431 | 5023328 | 8.070000e-40 | 176.0 |
69 | TraesCS3B01G341700 | chr7B | 94.690 | 113 | 6 | 0 | 5867 | 5979 | 27617354 | 27617242 | 8.070000e-40 | 176.0 |
70 | TraesCS3B01G341700 | chr2A | 100.000 | 33 | 0 | 0 | 306 | 338 | 499175727 | 499175695 | 2.360000e-05 | 62.1 |
71 | TraesCS3B01G341700 | chrUn | 91.111 | 45 | 1 | 3 | 294 | 338 | 38656841 | 38656800 | 3.050000e-04 | 58.4 |
72 | TraesCS3B01G341700 | chrUn | 100.000 | 30 | 0 | 0 | 309 | 338 | 354264760 | 354264789 | 1.000000e-03 | 56.5 |
73 | TraesCS3B01G341700 | chr6B | 97.143 | 35 | 0 | 1 | 309 | 343 | 18940240 | 18940273 | 3.050000e-04 | 58.4 |
74 | TraesCS3B01G341700 | chr4A | 100.000 | 30 | 0 | 0 | 309 | 338 | 672187559 | 672187588 | 1.000000e-03 | 56.5 |
75 | TraesCS3B01G341700 | chr1D | 100.000 | 30 | 0 | 0 | 309 | 338 | 28967323 | 28967294 | 1.000000e-03 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G341700 | chr3B | 548549300 | 548557123 | 7823 | True | 4865.066667 | 14449 | 100.000000 | 1 | 7824 | 3 | chr3B.!!$R4 | 7823 |
1 | TraesCS3B01G341700 | chr3B | 548840202 | 548850524 | 10322 | True | 1484.800000 | 5762 | 96.952000 | 4 | 7473 | 9 | chr3B.!!$R5 | 7469 |
2 | TraesCS3B01G341700 | chr3B | 548368810 | 548376628 | 7818 | True | 1393.966667 | 6549 | 96.411556 | 4 | 7824 | 9 | chr3B.!!$R3 | 7820 |
3 | TraesCS3B01G341700 | chr3B | 548080389 | 548084963 | 4574 | True | 888.071429 | 2678 | 95.752429 | 3904 | 7824 | 7 | chr3B.!!$R2 | 3920 |
4 | TraesCS3B01G341700 | chr3A | 529611483 | 529619804 | 8321 | False | 1005.266667 | 4855 | 92.460917 | 6 | 7823 | 12 | chr3A.!!$F2 | 7817 |
5 | TraesCS3B01G341700 | chr3D | 421369775 | 421377814 | 8039 | True | 1362.977778 | 3157 | 92.283889 | 4 | 7824 | 9 | chr3D.!!$R3 | 7820 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
479 | 490 | 1.815421 | GATTCGCCACCGTGCTGAT | 60.815 | 57.895 | 0.00 | 0.00 | 35.54 | 2.90 | F |
1289 | 1320 | 1.203025 | CCCTACTAGCGGGTACATCCT | 60.203 | 57.143 | 9.13 | 0.00 | 36.91 | 3.24 | F |
1385 | 1426 | 1.075542 | CGCCTTACTTGCACGATTCA | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 | F |
2586 | 2644 | 1.056660 | ACCATTCGAAGTGGTCCACT | 58.943 | 50.000 | 19.42 | 19.42 | 46.79 | 4.00 | F |
3781 | 4330 | 1.603802 | CAAATCAACCGTGCACACTCT | 59.396 | 47.619 | 18.64 | 0.00 | 0.00 | 3.24 | F |
5366 | 9359 | 0.109913 | AAGGAACCGAAACCCTCACC | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 | F |
6481 | 10677 | 0.037326 | CAAGTGCTGAGGCGGAAGTA | 60.037 | 55.000 | 0.00 | 0.00 | 42.25 | 2.24 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1295 | 1326 | 0.179282 | CGAAGTGTTCGCGCAAGTAC | 60.179 | 55.000 | 8.75 | 0.39 | 46.97 | 2.73 | R |
2586 | 2644 | 1.421268 | ACCTGAACAGAGGTGCATGAA | 59.579 | 47.619 | 0.00 | 0.00 | 45.20 | 2.57 | R |
3492 | 3820 | 4.461198 | CCATTGTCCTATGTTCCCCTTAC | 58.539 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 | R |
4451 | 5526 | 0.392461 | TGGTATGCAAAGACTCGCCC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 | R |
5873 | 9874 | 0.978907 | TTTTGGGACGGAGGGAGTAC | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 | R |
6487 | 10683 | 0.034767 | CCTTGATGCTTGGCTCTGGA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 | R |
7571 | 12128 | 1.146452 | TATCTACTCCCTCCGCTCCA | 58.854 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 9.713713 | TTTTTGGAAAGGTATATTTTTAGCACC | 57.286 | 29.630 | 0.00 | 0.00 | 0.00 | 5.01 |
38 | 39 | 8.658840 | TTTGGAAAGGTATATTTTTAGCACCT | 57.341 | 30.769 | 0.00 | 0.00 | 41.38 | 4.00 |
122 | 124 | 6.072728 | CGAAGTTGTGGTTGAATAATCTTCCA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
132 | 134 | 9.579932 | GGTTGAATAATCTTCCATCCTCTATTT | 57.420 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
235 | 241 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
236 | 242 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
237 | 243 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
238 | 244 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
239 | 245 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
289 | 295 | 7.175467 | TCCGGGTGTATATATGTACTGTTACTG | 59.825 | 40.741 | 0.00 | 2.77 | 0.00 | 2.74 |
479 | 490 | 1.815421 | GATTCGCCACCGTGCTGAT | 60.815 | 57.895 | 0.00 | 0.00 | 35.54 | 2.90 |
514 | 526 | 2.722201 | GCCCACCGGTCTCGATTCT | 61.722 | 63.158 | 2.59 | 0.00 | 39.00 | 2.40 |
594 | 611 | 2.346803 | GCGAGCTGGTCTTGATTACAA | 58.653 | 47.619 | 5.23 | 0.00 | 34.65 | 2.41 |
614 | 631 | 8.789825 | TTACAAAATAGCAAAAATGCCATCAT | 57.210 | 26.923 | 0.00 | 0.00 | 34.90 | 2.45 |
616 | 633 | 6.655848 | ACAAAATAGCAAAAATGCCATCATGT | 59.344 | 30.769 | 0.00 | 0.00 | 34.90 | 3.21 |
627 | 644 | 7.591421 | AAATGCCATCATGTCATCTAAATCA | 57.409 | 32.000 | 0.00 | 0.00 | 32.23 | 2.57 |
1289 | 1320 | 1.203025 | CCCTACTAGCGGGTACATCCT | 60.203 | 57.143 | 9.13 | 0.00 | 36.91 | 3.24 |
1295 | 1326 | 2.812499 | CGGGTACATCCTGGTCCG | 59.188 | 66.667 | 0.00 | 0.00 | 38.86 | 4.79 |
1385 | 1426 | 1.075542 | CGCCTTACTTGCACGATTCA | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1505 | 1546 | 1.463553 | GGCCTGAACAAACTGGGGTG | 61.464 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1560 | 1602 | 7.384439 | TGATAGCGATTGAGATTCTAGTAGG | 57.616 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1625 | 1672 | 9.237187 | TGCATACTTTATTGTCTATTGAACCAA | 57.763 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
1643 | 1690 | 5.464030 | ACCAATACGAGTCAACTTACACT | 57.536 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
1644 | 1691 | 5.227908 | ACCAATACGAGTCAACTTACACTG | 58.772 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
1645 | 1692 | 4.625742 | CCAATACGAGTCAACTTACACTGG | 59.374 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
1697 | 1744 | 5.824624 | ACTTTACTGGCATTATCATCACAGG | 59.175 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1737 | 1784 | 3.997021 | CAGTTTTACCAGCAGGAGTACAG | 59.003 | 47.826 | 0.35 | 0.00 | 38.69 | 2.74 |
1773 | 1820 | 5.237996 | CGGTAGATAGATTCACCGTCACTAA | 59.762 | 44.000 | 3.92 | 0.00 | 46.81 | 2.24 |
1851 | 1898 | 4.572909 | ACGACCTCCTGTTTATTTGGTAC | 58.427 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
1885 | 1932 | 6.542821 | TCTGAAATGGTAGAAGTTTGGTGAT | 58.457 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1913 | 1960 | 9.539825 | CTATAACAAACATAGTGAATCTGCTCT | 57.460 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
2074 | 2121 | 6.144563 | CAGAAACGTCGATGATATACATGCTT | 59.855 | 38.462 | 12.58 | 0.00 | 39.56 | 3.91 |
2076 | 2123 | 7.539022 | AGAAACGTCGATGATATACATGCTTAG | 59.461 | 37.037 | 12.58 | 0.00 | 39.56 | 2.18 |
2077 | 2124 | 6.255596 | ACGTCGATGATATACATGCTTAGT | 57.744 | 37.500 | 12.58 | 0.00 | 39.56 | 2.24 |
2078 | 2125 | 7.373778 | ACGTCGATGATATACATGCTTAGTA | 57.626 | 36.000 | 12.58 | 0.00 | 39.56 | 1.82 |
2079 | 2126 | 7.986562 | ACGTCGATGATATACATGCTTAGTAT | 58.013 | 34.615 | 12.58 | 0.00 | 39.56 | 2.12 |
2193 | 2251 | 4.726035 | ATCCCTCTCGGAACTAGATACA | 57.274 | 45.455 | 0.00 | 0.00 | 46.47 | 2.29 |
2586 | 2644 | 1.056660 | ACCATTCGAAGTGGTCCACT | 58.943 | 50.000 | 19.42 | 19.42 | 46.79 | 4.00 |
2671 | 2729 | 1.620822 | ATCACACAACAAAGGAGGCC | 58.379 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3365 | 3423 | 9.305555 | CTGATAAACATATGATCCATTTTCCCT | 57.694 | 33.333 | 10.38 | 0.00 | 0.00 | 4.20 |
3492 | 3820 | 8.450180 | AGTGAAATTTTAACAAAAGCAACCTTG | 58.550 | 29.630 | 0.00 | 0.00 | 33.22 | 3.61 |
3781 | 4330 | 1.603802 | CAAATCAACCGTGCACACTCT | 59.396 | 47.619 | 18.64 | 0.00 | 0.00 | 3.24 |
3843 | 4392 | 3.676646 | GCAAAAACAGATGATGGTTGCTC | 59.323 | 43.478 | 0.00 | 0.00 | 38.08 | 4.26 |
3941 | 4490 | 2.752903 | AGTTTTTGGTGGTGTGTCAGAC | 59.247 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3950 | 4499 | 4.299978 | GTGGTGTGTCAGACTAGAGAAAC | 58.700 | 47.826 | 1.31 | 0.00 | 0.00 | 2.78 |
4162 | 4816 | 6.610456 | TGTTGATACGCATTATTATGGCATG | 58.390 | 36.000 | 10.98 | 0.00 | 32.15 | 4.06 |
4212 | 4866 | 5.286438 | TGACATGCAGACCATATACGTAAC | 58.714 | 41.667 | 0.00 | 0.00 | 31.47 | 2.50 |
4453 | 5528 | 5.603170 | ATGACTTCCATTTTATTGCTGGG | 57.397 | 39.130 | 0.00 | 0.00 | 29.34 | 4.45 |
4568 | 5643 | 6.149973 | CCGGCTATCAAAATCATACATGACAT | 59.850 | 38.462 | 0.00 | 0.00 | 40.03 | 3.06 |
4672 | 5747 | 6.740401 | GCATTTCATTGTGGATAGGATGCATT | 60.740 | 38.462 | 0.00 | 0.00 | 37.78 | 3.56 |
4756 | 5988 | 6.731292 | AACCATTTTTACCAGAGAAAGCTT | 57.269 | 33.333 | 0.00 | 0.00 | 0.00 | 3.74 |
4772 | 6004 | 8.515414 | AGAGAAAGCTTGTTACCATTTGTTATC | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
4871 | 6103 | 1.815421 | CCTCCCTCAATCAACGGCG | 60.815 | 63.158 | 4.80 | 4.80 | 0.00 | 6.46 |
5039 | 9024 | 5.899631 | TCCCCTAAATGACAGTATTACCC | 57.100 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
5053 | 9038 | 1.352622 | TTACCCCCAGCCTATGCCTG | 61.353 | 60.000 | 0.00 | 0.00 | 38.69 | 4.85 |
5128 | 9114 | 8.740123 | ACGAGACTAATCTGATTTCTCTAAGA | 57.260 | 34.615 | 21.13 | 0.00 | 34.34 | 2.10 |
5181 | 9169 | 9.443323 | TTTTTGCTATACTTCTACTTGTATGCA | 57.557 | 29.630 | 0.00 | 0.00 | 34.62 | 3.96 |
5204 | 9192 | 6.510638 | GCAATGCTTTAAAATTATGCTCTGCC | 60.511 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
5215 | 9203 | 1.466856 | TGCTCTGCCTATTGCTTTGG | 58.533 | 50.000 | 0.00 | 0.00 | 42.00 | 3.28 |
5257 | 9245 | 6.432403 | TTTTTATTCAATTGCTCCCACCTT | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
5366 | 9359 | 0.109913 | AAGGAACCGAAACCCTCACC | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5482 | 9475 | 6.203072 | AGTTTTCTGCCTACCTTCCTATCTA | 58.797 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5655 | 9653 | 0.237498 | GTGACAAGTAAACTGCGGGC | 59.763 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
5738 | 9738 | 5.597813 | AGTTCTCTGTTCTACAATTTGCG | 57.402 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
5847 | 9848 | 6.392354 | ACATTGTAGCAATCCAAATGAACTG | 58.608 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5873 | 9874 | 9.612620 | GTACCTTTTCTGTTGATTGTTATCTTG | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
5874 | 9875 | 8.237811 | ACCTTTTCTGTTGATTGTTATCTTGT | 57.762 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
5875 | 9876 | 9.349713 | ACCTTTTCTGTTGATTGTTATCTTGTA | 57.650 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
5876 | 9877 | 9.612620 | CCTTTTCTGTTGATTGTTATCTTGTAC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
5879 | 9880 | 8.547967 | TTCTGTTGATTGTTATCTTGTACTCC | 57.452 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
5880 | 9881 | 7.103641 | TCTGTTGATTGTTATCTTGTACTCCC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
5881 | 9882 | 7.016153 | TGTTGATTGTTATCTTGTACTCCCT | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5882 | 9883 | 7.103641 | TGTTGATTGTTATCTTGTACTCCCTC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
5883 | 9884 | 6.235231 | TGATTGTTATCTTGTACTCCCTCC | 57.765 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
5884 | 9885 | 4.730949 | TTGTTATCTTGTACTCCCTCCG | 57.269 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
5885 | 9886 | 3.705051 | TGTTATCTTGTACTCCCTCCGT | 58.295 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
5886 | 9887 | 3.698040 | TGTTATCTTGTACTCCCTCCGTC | 59.302 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
5887 | 9888 | 1.777941 | ATCTTGTACTCCCTCCGTCC | 58.222 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5888 | 9889 | 0.324091 | TCTTGTACTCCCTCCGTCCC | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5889 | 9890 | 0.613853 | CTTGTACTCCCTCCGTCCCA | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
5890 | 9891 | 0.178926 | TTGTACTCCCTCCGTCCCAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5891 | 9892 | 0.178926 | TGTACTCCCTCCGTCCCAAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5892 | 9893 | 0.978907 | GTACTCCCTCCGTCCCAAAA | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5893 | 9894 | 1.558294 | GTACTCCCTCCGTCCCAAAAT | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
5894 | 9895 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5895 | 9896 | 2.271777 | ACTCCCTCCGTCCCAAAATAA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
5896 | 9897 | 2.238898 | ACTCCCTCCGTCCCAAAATAAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5897 | 9898 | 2.238898 | CTCCCTCCGTCCCAAAATAAGT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5898 | 9899 | 2.026636 | TCCCTCCGTCCCAAAATAAGTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5899 | 9900 | 2.290705 | CCCTCCGTCCCAAAATAAGTGT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5900 | 9901 | 3.007635 | CCTCCGTCCCAAAATAAGTGTC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5901 | 9902 | 3.307480 | CCTCCGTCCCAAAATAAGTGTCT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
5902 | 9903 | 4.324267 | CTCCGTCCCAAAATAAGTGTCTT | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5903 | 9904 | 4.069304 | TCCGTCCCAAAATAAGTGTCTTG | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5904 | 9905 | 4.069304 | CCGTCCCAAAATAAGTGTCTTGA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5905 | 9906 | 4.154195 | CCGTCCCAAAATAAGTGTCTTGAG | 59.846 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
5906 | 9907 | 4.378459 | CGTCCCAAAATAAGTGTCTTGAGC | 60.378 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
5907 | 9908 | 4.762251 | GTCCCAAAATAAGTGTCTTGAGCT | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
5908 | 9909 | 5.241728 | GTCCCAAAATAAGTGTCTTGAGCTT | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 3.74 |
5909 | 9910 | 6.430000 | GTCCCAAAATAAGTGTCTTGAGCTTA | 59.570 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
5910 | 9911 | 6.655003 | TCCCAAAATAAGTGTCTTGAGCTTAG | 59.345 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
5911 | 9912 | 6.431234 | CCCAAAATAAGTGTCTTGAGCTTAGT | 59.569 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
5912 | 9913 | 7.606456 | CCCAAAATAAGTGTCTTGAGCTTAGTA | 59.394 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
5913 | 9914 | 9.167311 | CCAAAATAAGTGTCTTGAGCTTAGTAT | 57.833 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
5921 | 9922 | 9.726438 | AGTGTCTTGAGCTTAGTATAAATTTGT | 57.274 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
5946 | 9947 | 7.148355 | ACTAGAGCTAGTACAAAGTTGAGAC | 57.852 | 40.000 | 8.35 | 0.00 | 43.98 | 3.36 |
5947 | 9948 | 6.715718 | ACTAGAGCTAGTACAAAGTTGAGACA | 59.284 | 38.462 | 8.35 | 0.00 | 43.98 | 3.41 |
5948 | 9949 | 5.774630 | AGAGCTAGTACAAAGTTGAGACAC | 58.225 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
5949 | 9950 | 5.536916 | AGAGCTAGTACAAAGTTGAGACACT | 59.463 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5950 | 9951 | 6.041069 | AGAGCTAGTACAAAGTTGAGACACTT | 59.959 | 38.462 | 0.00 | 0.00 | 38.74 | 3.16 |
5951 | 9952 | 7.230913 | AGAGCTAGTACAAAGTTGAGACACTTA | 59.769 | 37.037 | 0.00 | 0.00 | 35.87 | 2.24 |
5952 | 9953 | 7.897864 | AGCTAGTACAAAGTTGAGACACTTAT | 58.102 | 34.615 | 0.00 | 0.00 | 35.87 | 1.73 |
5953 | 9954 | 8.368668 | AGCTAGTACAAAGTTGAGACACTTATT | 58.631 | 33.333 | 0.00 | 0.00 | 35.87 | 1.40 |
5954 | 9955 | 8.989980 | GCTAGTACAAAGTTGAGACACTTATTT | 58.010 | 33.333 | 0.00 | 0.00 | 35.87 | 1.40 |
5957 | 9958 | 8.621286 | AGTACAAAGTTGAGACACTTATTTTGG | 58.379 | 33.333 | 0.00 | 0.00 | 35.87 | 3.28 |
5958 | 9959 | 6.805713 | ACAAAGTTGAGACACTTATTTTGGG | 58.194 | 36.000 | 0.00 | 0.00 | 35.87 | 4.12 |
5959 | 9960 | 6.605594 | ACAAAGTTGAGACACTTATTTTGGGA | 59.394 | 34.615 | 0.00 | 0.00 | 35.87 | 4.37 |
5960 | 9961 | 6.635030 | AAGTTGAGACACTTATTTTGGGAC | 57.365 | 37.500 | 0.00 | 0.00 | 35.10 | 4.46 |
5961 | 9962 | 4.755123 | AGTTGAGACACTTATTTTGGGACG | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
5962 | 9963 | 3.670625 | TGAGACACTTATTTTGGGACGG | 58.329 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5963 | 9964 | 3.325425 | TGAGACACTTATTTTGGGACGGA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
5964 | 9965 | 3.933332 | GAGACACTTATTTTGGGACGGAG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
5965 | 9966 | 3.007635 | GACACTTATTTTGGGACGGAGG | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5966 | 9967 | 2.290705 | ACACTTATTTTGGGACGGAGGG | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5967 | 9968 | 2.026636 | CACTTATTTTGGGACGGAGGGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
6475 | 10671 | 1.302033 | AGAACCAAGTGCTGAGGCG | 60.302 | 57.895 | 0.00 | 0.00 | 42.25 | 5.52 |
6476 | 10672 | 2.281761 | AACCAAGTGCTGAGGCGG | 60.282 | 61.111 | 0.00 | 0.00 | 42.25 | 6.13 |
6477 | 10673 | 2.731691 | GAACCAAGTGCTGAGGCGGA | 62.732 | 60.000 | 0.00 | 0.00 | 42.25 | 5.54 |
6478 | 10674 | 2.032528 | CCAAGTGCTGAGGCGGAA | 59.967 | 61.111 | 0.00 | 0.00 | 42.25 | 4.30 |
6479 | 10675 | 2.037136 | CCAAGTGCTGAGGCGGAAG | 61.037 | 63.158 | 0.00 | 0.00 | 42.25 | 3.46 |
6480 | 10676 | 1.302033 | CAAGTGCTGAGGCGGAAGT | 60.302 | 57.895 | 0.00 | 0.00 | 42.25 | 3.01 |
6481 | 10677 | 0.037326 | CAAGTGCTGAGGCGGAAGTA | 60.037 | 55.000 | 0.00 | 0.00 | 42.25 | 2.24 |
6482 | 10678 | 0.247736 | AAGTGCTGAGGCGGAAGTAG | 59.752 | 55.000 | 0.00 | 0.00 | 42.25 | 2.57 |
6483 | 10679 | 0.612174 | AGTGCTGAGGCGGAAGTAGA | 60.612 | 55.000 | 0.00 | 0.00 | 42.25 | 2.59 |
6484 | 10680 | 0.458716 | GTGCTGAGGCGGAAGTAGAC | 60.459 | 60.000 | 0.00 | 0.00 | 42.25 | 2.59 |
6485 | 10681 | 1.226717 | GCTGAGGCGGAAGTAGACG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
6486 | 10682 | 1.935327 | GCTGAGGCGGAAGTAGACGT | 61.935 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
6487 | 10683 | 0.526662 | CTGAGGCGGAAGTAGACGTT | 59.473 | 55.000 | 0.00 | 0.00 | 0.00 | 3.99 |
6488 | 10684 | 0.524862 | TGAGGCGGAAGTAGACGTTC | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6489 | 10685 | 0.179142 | GAGGCGGAAGTAGACGTTCC | 60.179 | 60.000 | 0.00 | 0.00 | 40.25 | 3.62 |
6490 | 10686 | 0.896940 | AGGCGGAAGTAGACGTTCCA | 60.897 | 55.000 | 4.22 | 0.00 | 43.35 | 3.53 |
6491 | 10687 | 0.458025 | GGCGGAAGTAGACGTTCCAG | 60.458 | 60.000 | 4.22 | 0.00 | 43.35 | 3.86 |
6492 | 10688 | 0.524862 | GCGGAAGTAGACGTTCCAGA | 59.475 | 55.000 | 4.22 | 0.00 | 43.35 | 3.86 |
6493 | 10689 | 1.467713 | GCGGAAGTAGACGTTCCAGAG | 60.468 | 57.143 | 4.22 | 0.00 | 43.35 | 3.35 |
6494 | 10690 | 1.467713 | CGGAAGTAGACGTTCCAGAGC | 60.468 | 57.143 | 4.22 | 0.00 | 43.35 | 4.09 |
6495 | 10691 | 1.135053 | GGAAGTAGACGTTCCAGAGCC | 60.135 | 57.143 | 0.00 | 0.00 | 42.79 | 4.70 |
6496 | 10692 | 1.544691 | GAAGTAGACGTTCCAGAGCCA | 59.455 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
6497 | 10693 | 1.629043 | AGTAGACGTTCCAGAGCCAA | 58.371 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
6498 | 10694 | 1.546476 | AGTAGACGTTCCAGAGCCAAG | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
6499 | 10695 | 0.246635 | TAGACGTTCCAGAGCCAAGC | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
6500 | 10696 | 1.301716 | GACGTTCCAGAGCCAAGCA | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
6501 | 10697 | 0.674895 | GACGTTCCAGAGCCAAGCAT | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
6502 | 10698 | 0.674895 | ACGTTCCAGAGCCAAGCATC | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
6503 | 10699 | 0.674581 | CGTTCCAGAGCCAAGCATCA | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
6504 | 10700 | 1.538047 | GTTCCAGAGCCAAGCATCAA | 58.462 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6505 | 10701 | 1.471684 | GTTCCAGAGCCAAGCATCAAG | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
6506 | 10702 | 0.034767 | TCCAGAGCCAAGCATCAAGG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
6520 | 10749 | 3.563223 | CATCAAGGCTGAAGGAATGGAT | 58.437 | 45.455 | 0.00 | 0.00 | 34.49 | 3.41 |
7246 | 11481 | 2.687700 | TGATCTTGAGCTTGCTCTCC | 57.312 | 50.000 | 21.17 | 8.20 | 32.22 | 3.71 |
7418 | 11655 | 5.584649 | CGTCATTGCTGAATACCCTAGAAAA | 59.415 | 40.000 | 0.00 | 0.00 | 31.85 | 2.29 |
7571 | 12128 | 8.138928 | TGAGAAACGATCTTATATCATGGGAT | 57.861 | 34.615 | 0.00 | 0.00 | 38.96 | 3.85 |
7572 | 12129 | 8.037166 | TGAGAAACGATCTTATATCATGGGATG | 58.963 | 37.037 | 0.00 | 0.00 | 38.96 | 3.51 |
7573 | 12130 | 7.334090 | AGAAACGATCTTATATCATGGGATGG | 58.666 | 38.462 | 0.00 | 0.00 | 33.39 | 3.51 |
7574 | 12131 | 6.874278 | AACGATCTTATATCATGGGATGGA | 57.126 | 37.500 | 0.00 | 0.00 | 34.89 | 3.41 |
7575 | 12132 | 6.477053 | ACGATCTTATATCATGGGATGGAG | 57.523 | 41.667 | 0.00 | 0.00 | 34.89 | 3.86 |
7780 | 12409 | 9.442047 | AATACATAAATAGGCTGTTGATAGCTC | 57.558 | 33.333 | 0.00 | 0.00 | 43.22 | 4.09 |
7781 | 12410 | 7.072263 | ACATAAATAGGCTGTTGATAGCTCT | 57.928 | 36.000 | 0.00 | 0.00 | 43.22 | 4.09 |
7804 | 12433 | 2.823747 | GGAACGCCCTAAAAAGGTTCAT | 59.176 | 45.455 | 4.83 | 0.00 | 38.90 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.437741 | CCTTTCCAAAAATCCTTGCATGC | 59.562 | 43.478 | 11.82 | 11.82 | 0.00 | 4.06 |
1 | 2 | 4.644498 | ACCTTTCCAAAAATCCTTGCATG | 58.356 | 39.130 | 0.00 | 0.00 | 0.00 | 4.06 |
2 | 3 | 4.980339 | ACCTTTCCAAAAATCCTTGCAT | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 3.96 |
37 | 38 | 1.674611 | CGGTTAGCTTCACGCGTGAG | 61.675 | 60.000 | 37.06 | 30.16 | 45.59 | 3.51 |
38 | 39 | 1.731613 | CGGTTAGCTTCACGCGTGA | 60.732 | 57.895 | 36.40 | 36.40 | 45.59 | 4.35 |
122 | 124 | 8.883731 | CATCAACAACTAACGAAAATAGAGGAT | 58.116 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
132 | 134 | 9.214957 | AGAAATACATCATCAACAACTAACGAA | 57.785 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
425 | 435 | 1.194781 | AGGAGACACATGGGCGAAGT | 61.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
514 | 526 | 1.681327 | GACTAGGTGGGCGGTGAGA | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 3.27 |
560 | 572 | 1.738099 | CTCGCCTTCGTGGAACTGG | 60.738 | 63.158 | 1.63 | 0.00 | 38.35 | 4.00 |
564 | 576 | 2.048222 | CAGCTCGCCTTCGTGGAA | 60.048 | 61.111 | 1.63 | 0.00 | 38.35 | 3.53 |
594 | 611 | 6.408035 | TGACATGATGGCATTTTTGCTATTT | 58.592 | 32.000 | 0.00 | 0.00 | 36.13 | 1.40 |
614 | 631 | 3.384789 | CCTCCGTCCTGATTTAGATGACA | 59.615 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
616 | 633 | 2.965831 | CCCTCCGTCCTGATTTAGATGA | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
627 | 644 | 0.338814 | ATCAACTACCCCTCCGTCCT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
689 | 718 | 9.598517 | ACACAATTCACAAGTAACAAATGAATT | 57.401 | 25.926 | 5.00 | 5.00 | 46.02 | 2.17 |
1289 | 1320 | 3.210223 | TTCGCGCAAGTACGGACCA | 62.210 | 57.895 | 8.75 | 0.00 | 41.68 | 4.02 |
1295 | 1326 | 0.179282 | CGAAGTGTTCGCGCAAGTAC | 60.179 | 55.000 | 8.75 | 0.39 | 46.97 | 2.73 |
1385 | 1426 | 0.606401 | CTGAACCAACAGCCGTCCAT | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1505 | 1546 | 7.410485 | GCTTAAGCCTTTATACAGTTGATGAC | 58.590 | 38.462 | 17.00 | 0.00 | 34.31 | 3.06 |
1560 | 1602 | 8.150945 | TCTCAATAGCCAGTAAACTATCCATTC | 58.849 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
1625 | 1672 | 4.321750 | CCACCAGTGTAAGTTGACTCGTAT | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
1645 | 1692 | 5.554822 | TTTTTGCGAGGTGATAATACCAC | 57.445 | 39.130 | 0.00 | 0.00 | 43.37 | 4.16 |
1737 | 1784 | 7.976175 | TGAATCTATCTACCGATATGAATGCAC | 59.024 | 37.037 | 0.00 | 0.00 | 31.98 | 4.57 |
1766 | 1813 | 7.652300 | TCAAGTGATATTGTGTGTTAGTGAC | 57.348 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1773 | 1820 | 6.899393 | ACCAAATCAAGTGATATTGTGTGT | 57.101 | 33.333 | 0.00 | 0.00 | 33.73 | 3.72 |
1800 | 1847 | 3.737559 | TGAATGCAGTAACTCCCCATT | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1851 | 1898 | 8.428063 | ACTTCTACCATTTCAGAATCAGATAGG | 58.572 | 37.037 | 0.00 | 0.00 | 30.70 | 2.57 |
1885 | 1932 | 7.770433 | AGCAGATTCACTATGTTTGTTATAGCA | 59.230 | 33.333 | 0.00 | 0.00 | 32.58 | 3.49 |
1913 | 1960 | 1.320507 | TACTGTGTACACGCTCCACA | 58.679 | 50.000 | 20.61 | 0.79 | 37.52 | 4.17 |
2586 | 2644 | 1.421268 | ACCTGAACAGAGGTGCATGAA | 59.579 | 47.619 | 0.00 | 0.00 | 45.20 | 2.57 |
3492 | 3820 | 4.461198 | CCATTGTCCTATGTTCCCCTTAC | 58.539 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
3781 | 4330 | 2.290071 | CCCTCCTGAAAACTTTCGCCTA | 60.290 | 50.000 | 0.00 | 0.00 | 40.01 | 3.93 |
3843 | 4392 | 4.402474 | ACTGTCTTTGGAAGGTTGAAAAGG | 59.598 | 41.667 | 0.00 | 0.00 | 31.87 | 3.11 |
3941 | 4490 | 5.126779 | GGGGGCATCTTAAAGTTTCTCTAG | 58.873 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3950 | 4499 | 5.619132 | AATCATTTGGGGGCATCTTAAAG | 57.381 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
4124 | 4778 | 5.356426 | CGTATCAACATGTCCATCCTACAA | 58.644 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
4212 | 4866 | 9.806203 | TCAATAAAAAGGTGATAATGCATTCTG | 57.194 | 29.630 | 16.86 | 0.00 | 0.00 | 3.02 |
4386 | 5461 | 8.863049 | CAATGACACAAATTTGTAAATAGCTCC | 58.137 | 33.333 | 22.87 | 5.26 | 39.91 | 4.70 |
4451 | 5526 | 0.392461 | TGGTATGCAAAGACTCGCCC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4453 | 5528 | 1.599542 | GGATGGTATGCAAAGACTCGC | 59.400 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
4568 | 5643 | 4.022413 | AGAGAGACAGCTGTGTAGTACA | 57.978 | 45.455 | 27.27 | 0.00 | 36.88 | 2.90 |
4695 | 5770 | 4.573021 | TCACAATGGGATCTTGATCACA | 57.427 | 40.909 | 16.61 | 16.61 | 38.48 | 3.58 |
4772 | 6004 | 6.558771 | TGTATAATTGGCATGAATCCTTCG | 57.441 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
4871 | 6103 | 8.831550 | CAGAGGTAAGATAAGGTTTAAATCTGC | 58.168 | 37.037 | 0.68 | 0.00 | 30.50 | 4.26 |
4963 | 8948 | 6.540995 | AGTACTACTGTCAACTAGGTTCAGA | 58.459 | 40.000 | 14.39 | 0.00 | 0.00 | 3.27 |
5128 | 9114 | 2.706350 | TGGGGAGCTATTGAGGCTATT | 58.294 | 47.619 | 0.00 | 0.00 | 40.40 | 1.73 |
5181 | 9169 | 6.881570 | AGGCAGAGCATAATTTTAAAGCATT | 58.118 | 32.000 | 0.02 | 0.00 | 0.00 | 3.56 |
5237 | 9225 | 6.432403 | AAAAAGGTGGGAGCAATTGAATAA | 57.568 | 33.333 | 10.34 | 0.00 | 0.00 | 1.40 |
5366 | 9359 | 1.000283 | ACAGTCTTGACCTCTTGCTCG | 60.000 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
5738 | 9738 | 4.926140 | AAGCAGCATAAATTAAGCTCCC | 57.074 | 40.909 | 0.00 | 0.00 | 36.26 | 4.30 |
5847 | 9848 | 9.612620 | CAAGATAACAATCAACAGAAAAGGTAC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
5873 | 9874 | 0.978907 | TTTTGGGACGGAGGGAGTAC | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5874 | 9875 | 1.961133 | ATTTTGGGACGGAGGGAGTA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5875 | 9876 | 1.961133 | TATTTTGGGACGGAGGGAGT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5876 | 9877 | 2.238898 | ACTTATTTTGGGACGGAGGGAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5877 | 9878 | 2.026636 | CACTTATTTTGGGACGGAGGGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5878 | 9879 | 2.290705 | ACACTTATTTTGGGACGGAGGG | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5879 | 9880 | 3.007635 | GACACTTATTTTGGGACGGAGG | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5880 | 9881 | 3.939066 | AGACACTTATTTTGGGACGGAG | 58.061 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
5881 | 9882 | 4.069304 | CAAGACACTTATTTTGGGACGGA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
5882 | 9883 | 4.069304 | TCAAGACACTTATTTTGGGACGG | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
5883 | 9884 | 4.378459 | GCTCAAGACACTTATTTTGGGACG | 60.378 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
5884 | 9885 | 4.762251 | AGCTCAAGACACTTATTTTGGGAC | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 4.46 |
5885 | 9886 | 4.985538 | AGCTCAAGACACTTATTTTGGGA | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
5886 | 9887 | 5.712152 | AAGCTCAAGACACTTATTTTGGG | 57.288 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
5887 | 9888 | 7.440523 | ACTAAGCTCAAGACACTTATTTTGG | 57.559 | 36.000 | 3.19 | 0.00 | 0.00 | 3.28 |
5895 | 9896 | 9.726438 | ACAAATTTATACTAAGCTCAAGACACT | 57.274 | 29.630 | 3.19 | 0.00 | 0.00 | 3.55 |
5921 | 9922 | 7.881751 | TGTCTCAACTTTGTACTAGCTCTAGTA | 59.118 | 37.037 | 11.59 | 11.59 | 43.98 | 1.82 |
5923 | 9924 | 7.024768 | GTGTCTCAACTTTGTACTAGCTCTAG | 58.975 | 42.308 | 0.00 | 2.55 | 39.04 | 2.43 |
5924 | 9925 | 6.715718 | AGTGTCTCAACTTTGTACTAGCTCTA | 59.284 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
5925 | 9926 | 5.536916 | AGTGTCTCAACTTTGTACTAGCTCT | 59.463 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
5926 | 9927 | 5.774630 | AGTGTCTCAACTTTGTACTAGCTC | 58.225 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
5927 | 9928 | 5.793030 | AGTGTCTCAACTTTGTACTAGCT | 57.207 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
5928 | 9929 | 8.535690 | AATAAGTGTCTCAACTTTGTACTAGC | 57.464 | 34.615 | 0.00 | 0.00 | 40.77 | 3.42 |
5931 | 9932 | 8.621286 | CCAAAATAAGTGTCTCAACTTTGTACT | 58.379 | 33.333 | 0.00 | 0.00 | 40.77 | 2.73 |
5932 | 9933 | 7.860872 | CCCAAAATAAGTGTCTCAACTTTGTAC | 59.139 | 37.037 | 0.00 | 0.00 | 40.77 | 2.90 |
5933 | 9934 | 7.776030 | TCCCAAAATAAGTGTCTCAACTTTGTA | 59.224 | 33.333 | 0.00 | 0.00 | 40.77 | 2.41 |
5934 | 9935 | 6.605594 | TCCCAAAATAAGTGTCTCAACTTTGT | 59.394 | 34.615 | 0.00 | 0.00 | 40.77 | 2.83 |
5935 | 9936 | 6.918022 | GTCCCAAAATAAGTGTCTCAACTTTG | 59.082 | 38.462 | 0.00 | 0.00 | 40.77 | 2.77 |
5936 | 9937 | 6.238648 | CGTCCCAAAATAAGTGTCTCAACTTT | 60.239 | 38.462 | 0.00 | 0.00 | 40.77 | 2.66 |
5937 | 9938 | 5.238650 | CGTCCCAAAATAAGTGTCTCAACTT | 59.761 | 40.000 | 0.00 | 0.00 | 42.89 | 2.66 |
5938 | 9939 | 4.755123 | CGTCCCAAAATAAGTGTCTCAACT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
5939 | 9940 | 4.083484 | CCGTCCCAAAATAAGTGTCTCAAC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
5940 | 9941 | 4.069304 | CCGTCCCAAAATAAGTGTCTCAA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5941 | 9942 | 3.325425 | TCCGTCCCAAAATAAGTGTCTCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
5942 | 9943 | 3.933332 | CTCCGTCCCAAAATAAGTGTCTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
5943 | 9944 | 3.307480 | CCTCCGTCCCAAAATAAGTGTCT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
5944 | 9945 | 3.007635 | CCTCCGTCCCAAAATAAGTGTC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5945 | 9946 | 2.290705 | CCCTCCGTCCCAAAATAAGTGT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5946 | 9947 | 2.026636 | TCCCTCCGTCCCAAAATAAGTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5947 | 9948 | 2.238898 | CTCCCTCCGTCCCAAAATAAGT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5948 | 9949 | 2.238898 | ACTCCCTCCGTCCCAAAATAAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5949 | 9950 | 2.271777 | ACTCCCTCCGTCCCAAAATAA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
5950 | 9951 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5951 | 9952 | 1.961133 | TACTCCCTCCGTCCCAAAAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5952 | 9953 | 1.557832 | CATACTCCCTCCGTCCCAAAA | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
5953 | 9954 | 1.200519 | CATACTCCCTCCGTCCCAAA | 58.799 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5954 | 9955 | 0.042131 | ACATACTCCCTCCGTCCCAA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5955 | 9956 | 0.928505 | TACATACTCCCTCCGTCCCA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
5956 | 9957 | 1.893801 | CATACATACTCCCTCCGTCCC | 59.106 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
5957 | 9958 | 2.595238 | ACATACATACTCCCTCCGTCC | 58.405 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
5958 | 9959 | 5.979288 | AATACATACATACTCCCTCCGTC | 57.021 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
5959 | 9960 | 5.836898 | TCAAATACATACATACTCCCTCCGT | 59.163 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5960 | 9961 | 6.340962 | TCAAATACATACATACTCCCTCCG | 57.659 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
5961 | 9962 | 7.680730 | ACATCAAATACATACATACTCCCTCC | 58.319 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
5962 | 9963 | 8.367911 | TGACATCAAATACATACATACTCCCTC | 58.632 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
5963 | 9964 | 8.262601 | TGACATCAAATACATACATACTCCCT | 57.737 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
5964 | 9965 | 8.902540 | TTGACATCAAATACATACATACTCCC | 57.097 | 34.615 | 0.00 | 0.00 | 32.11 | 4.30 |
6199 | 10362 | 6.509418 | TTAACATTTTCCATACTGCCAGAC | 57.491 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
6475 | 10671 | 1.135053 | GGCTCTGGAACGTCTACTTCC | 60.135 | 57.143 | 0.00 | 0.00 | 38.18 | 3.46 |
6476 | 10672 | 1.544691 | TGGCTCTGGAACGTCTACTTC | 59.455 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
6477 | 10673 | 1.629043 | TGGCTCTGGAACGTCTACTT | 58.371 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6478 | 10674 | 1.546476 | CTTGGCTCTGGAACGTCTACT | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
6479 | 10675 | 1.997669 | CTTGGCTCTGGAACGTCTAC | 58.002 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6480 | 10676 | 0.246635 | GCTTGGCTCTGGAACGTCTA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6481 | 10677 | 1.004440 | GCTTGGCTCTGGAACGTCT | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
6482 | 10678 | 0.674895 | ATGCTTGGCTCTGGAACGTC | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
6483 | 10679 | 0.674895 | GATGCTTGGCTCTGGAACGT | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.99 |
6484 | 10680 | 0.674581 | TGATGCTTGGCTCTGGAACG | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6485 | 10681 | 1.471684 | CTTGATGCTTGGCTCTGGAAC | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
6486 | 10682 | 1.615116 | CCTTGATGCTTGGCTCTGGAA | 60.615 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
6487 | 10683 | 0.034767 | CCTTGATGCTTGGCTCTGGA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6488 | 10684 | 1.664321 | GCCTTGATGCTTGGCTCTGG | 61.664 | 60.000 | 0.00 | 0.00 | 43.05 | 3.86 |
6489 | 10685 | 1.807886 | GCCTTGATGCTTGGCTCTG | 59.192 | 57.895 | 0.00 | 0.00 | 43.05 | 3.35 |
6490 | 10686 | 4.333417 | GCCTTGATGCTTGGCTCT | 57.667 | 55.556 | 0.00 | 0.00 | 43.05 | 4.09 |
6493 | 10689 | 0.172803 | CTTCAGCCTTGATGCTTGGC | 59.827 | 55.000 | 0.00 | 0.00 | 46.42 | 4.52 |
6494 | 10690 | 0.815734 | CCTTCAGCCTTGATGCTTGG | 59.184 | 55.000 | 0.00 | 0.00 | 40.32 | 3.61 |
6495 | 10691 | 1.830279 | TCCTTCAGCCTTGATGCTTG | 58.170 | 50.000 | 0.00 | 0.00 | 40.32 | 4.01 |
6496 | 10692 | 2.592102 | TTCCTTCAGCCTTGATGCTT | 57.408 | 45.000 | 0.00 | 0.00 | 40.32 | 3.91 |
6497 | 10693 | 2.376109 | CATTCCTTCAGCCTTGATGCT | 58.624 | 47.619 | 0.00 | 0.00 | 44.00 | 3.79 |
6498 | 10694 | 1.407979 | CCATTCCTTCAGCCTTGATGC | 59.592 | 52.381 | 0.00 | 0.00 | 32.27 | 3.91 |
6499 | 10695 | 3.008835 | TCCATTCCTTCAGCCTTGATG | 57.991 | 47.619 | 0.00 | 0.00 | 32.27 | 3.07 |
6500 | 10696 | 3.053095 | ACATCCATTCCTTCAGCCTTGAT | 60.053 | 43.478 | 0.00 | 0.00 | 32.27 | 2.57 |
6501 | 10697 | 2.309755 | ACATCCATTCCTTCAGCCTTGA | 59.690 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
6502 | 10698 | 2.731572 | ACATCCATTCCTTCAGCCTTG | 58.268 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
6503 | 10699 | 3.094572 | CAACATCCATTCCTTCAGCCTT | 58.905 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
6504 | 10700 | 2.731572 | CAACATCCATTCCTTCAGCCT | 58.268 | 47.619 | 0.00 | 0.00 | 0.00 | 4.58 |
6505 | 10701 | 1.135721 | GCAACATCCATTCCTTCAGCC | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
6506 | 10702 | 1.820519 | TGCAACATCCATTCCTTCAGC | 59.179 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
6507 | 10703 | 3.349927 | TCTGCAACATCCATTCCTTCAG | 58.650 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
6520 | 10749 | 1.823470 | AGCGCTTGGTTCTGCAACA | 60.823 | 52.632 | 2.64 | 0.00 | 33.70 | 3.33 |
7246 | 11481 | 6.302313 | CGTCTAAACAAAATAGAAAGCAACCG | 59.698 | 38.462 | 0.00 | 0.00 | 31.52 | 4.44 |
7571 | 12128 | 1.146452 | TATCTACTCCCTCCGCTCCA | 58.854 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
7572 | 12129 | 2.289592 | TTATCTACTCCCTCCGCTCC | 57.710 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
7573 | 12130 | 3.615351 | GCAATTATCTACTCCCTCCGCTC | 60.615 | 52.174 | 0.00 | 0.00 | 0.00 | 5.03 |
7574 | 12131 | 2.300437 | GCAATTATCTACTCCCTCCGCT | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
7575 | 12132 | 2.613223 | GGCAATTATCTACTCCCTCCGC | 60.613 | 54.545 | 0.00 | 0.00 | 0.00 | 5.54 |
7781 | 12410 | 3.072768 | TGAACCTTTTTAGGGCGTTCCTA | 59.927 | 43.478 | 3.11 | 3.11 | 45.98 | 2.94 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.