Multiple sequence alignment - TraesCS3B01G340700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G340700
chr3B
100.000
2453
0
0
1
2453
547125760
547128212
0.000000e+00
4530.0
1
TraesCS3B01G340700
chr3A
93.248
1644
81
15
2
1631
531080239
531078612
0.000000e+00
2394.0
2
TraesCS3B01G340700
chr3A
89.333
675
59
10
1785
2453
530941813
530941146
0.000000e+00
835.0
3
TraesCS3B01G340700
chr3A
96.154
52
2
0
1661
1712
531078606
531078555
4.350000e-13
86.1
4
TraesCS3B01G340700
chr3A
100.000
30
0
0
2118
2147
534330903
534330932
3.410000e-04
56.5
5
TraesCS3B01G340700
chr3D
93.010
887
40
10
758
1639
419907174
419908043
0.000000e+00
1275.0
6
TraesCS3B01G340700
chr3D
91.699
783
42
16
1
774
419906392
419907160
0.000000e+00
1064.0
7
TraesCS3B01G340700
chr3D
90.223
808
61
14
1654
2453
419929158
419929955
0.000000e+00
1038.0
8
TraesCS3B01G340700
chr3D
86.184
152
18
2
1814
1963
611670342
611670492
7.020000e-36
161.0
9
TraesCS3B01G340700
chr6D
84.694
196
28
2
2259
2453
61019535
61019729
6.920000e-46
195.0
10
TraesCS3B01G340700
chr2A
83.500
200
31
2
2255
2453
4999367
4999169
4.170000e-43
185.0
11
TraesCS3B01G340700
chr4D
87.324
142
18
0
2258
2399
51987140
51986999
1.950000e-36
163.0
12
TraesCS3B01G340700
chr4D
80.667
150
24
3
1824
1971
392498185
392498039
7.170000e-21
111.0
13
TraesCS3B01G340700
chr4D
89.157
83
9
0
2254
2336
341527395
341527477
1.200000e-18
104.0
14
TraesCS3B01G340700
chr2D
84.967
153
21
2
1824
1974
58661067
58660915
1.170000e-33
154.0
15
TraesCS3B01G340700
chr6B
80.296
203
34
2
2257
2453
564311117
564311319
5.470000e-32
148.0
16
TraesCS3B01G340700
chr4A
81.921
177
30
2
2259
2434
24955320
24955145
5.470000e-32
148.0
17
TraesCS3B01G340700
chr7A
78.325
203
36
3
2259
2453
167526717
167526515
9.210000e-25
124.0
18
TraesCS3B01G340700
chr6A
90.741
54
5
0
2375
2428
30132150
30132203
3.380000e-09
73.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G340700
chr3B
547125760
547128212
2452
False
4530.00
4530
100.0000
1
2453
1
chr3B.!!$F1
2452
1
TraesCS3B01G340700
chr3A
531078555
531080239
1684
True
1240.05
2394
94.7010
2
1712
2
chr3A.!!$R2
1710
2
TraesCS3B01G340700
chr3A
530941146
530941813
667
True
835.00
835
89.3330
1785
2453
1
chr3A.!!$R1
668
3
TraesCS3B01G340700
chr3D
419906392
419908043
1651
False
1169.50
1275
92.3545
1
1639
2
chr3D.!!$F3
1638
4
TraesCS3B01G340700
chr3D
419929158
419929955
797
False
1038.00
1038
90.2230
1654
2453
1
chr3D.!!$F1
799
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
664
676
1.142748
CACTGGGCGGCTAGAAGAG
59.857
63.158
28.95
11.26
0.0
2.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2152
2218
0.108615
GCGTGCACACATCCTAGACT
60.109
55.0
18.64
0.0
0.0
3.24
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
28
29
8.681486
TTTCTGATAAAGTATGCATGCTATGT
57.319
30.769
18.16
8.96
0.00
2.29
81
82
4.989168
ACTGAATAAAACACGACCAGACTC
59.011
41.667
0.00
0.00
0.00
3.36
161
162
9.626045
AATTCACTTTAAAAACATAGCAGCTAC
57.374
29.630
3.59
0.00
0.00
3.58
162
163
7.979444
TCACTTTAAAAACATAGCAGCTACT
57.021
32.000
3.59
0.00
0.00
2.57
163
164
8.391075
TCACTTTAAAAACATAGCAGCTACTT
57.609
30.769
3.59
0.00
0.00
2.24
164
165
9.496873
TCACTTTAAAAACATAGCAGCTACTTA
57.503
29.630
3.59
0.00
0.00
2.24
194
195
2.807676
ACCATGGGTCTTGGAATTGAC
58.192
47.619
18.09
0.00
37.69
3.18
205
206
6.038356
GTCTTGGAATTGACCATTTGCATAG
58.962
40.000
0.00
2.81
39.82
2.23
266
267
3.183574
CGGTCTATCGATAAAAATGCGCA
59.816
43.478
14.96
14.96
0.00
6.09
274
275
3.061928
CGATAAAAATGCGCATGGAAACG
60.062
43.478
26.09
20.09
0.00
3.60
576
585
2.592308
GGTAGCAGCAGAAGGGGG
59.408
66.667
0.00
0.00
0.00
5.40
624
633
3.428797
TCGGCGAGGACGATAAGG
58.571
61.111
4.99
0.00
38.55
2.69
626
635
2.191513
CGGCGAGGACGATAAGGGA
61.192
63.158
0.00
0.00
42.66
4.20
664
676
1.142748
CACTGGGCGGCTAGAAGAG
59.857
63.158
28.95
11.26
0.00
2.85
727
745
1.345741
TCTGAAAGCCTGTCCACAGAG
59.654
52.381
8.36
0.13
46.59
3.35
1158
1217
2.126424
GCGCTCCTCGTCGTCTTT
60.126
61.111
0.00
0.00
41.07
2.52
1461
1520
1.354040
CGTGCTGCTAGGTCTTCTTG
58.646
55.000
0.00
0.00
0.00
3.02
1547
1606
4.806330
TCTCACTATTCACAACCGTTCTC
58.194
43.478
0.00
0.00
0.00
2.87
1565
1624
0.313672
TCGTTTGGTTGCATCTTGCC
59.686
50.000
0.00
0.00
44.23
4.52
1583
1642
1.342174
GCCTATCGACCGGGATTAACA
59.658
52.381
6.32
0.00
0.00
2.41
1594
1653
7.030768
CGACCGGGATTAACATTTTTGTTATT
58.969
34.615
6.32
0.00
34.66
1.40
1595
1654
7.542824
CGACCGGGATTAACATTTTTGTTATTT
59.457
33.333
6.32
0.00
34.66
1.40
1596
1655
8.541133
ACCGGGATTAACATTTTTGTTATTTG
57.459
30.769
6.32
0.00
34.66
2.32
1597
1656
8.368668
ACCGGGATTAACATTTTTGTTATTTGA
58.631
29.630
6.32
0.00
34.66
2.69
1598
1657
9.377312
CCGGGATTAACATTTTTGTTATTTGAT
57.623
29.630
0.00
0.00
34.66
2.57
1631
1690
3.568007
TGCTGGATTTAGTTGTTGGTGTC
59.432
43.478
0.00
0.00
0.00
3.67
1639
1698
2.546778
AGTTGTTGGTGTCGTACTGTG
58.453
47.619
0.00
0.00
0.00
3.66
1640
1699
2.166870
AGTTGTTGGTGTCGTACTGTGA
59.833
45.455
0.00
0.00
0.00
3.58
1641
1700
3.128349
GTTGTTGGTGTCGTACTGTGAT
58.872
45.455
0.00
0.00
0.00
3.06
1642
1701
2.749776
TGTTGGTGTCGTACTGTGATG
58.250
47.619
0.00
0.00
0.00
3.07
1643
1702
2.066262
GTTGGTGTCGTACTGTGATGG
58.934
52.381
0.00
0.00
0.00
3.51
1644
1703
0.037697
TGGTGTCGTACTGTGATGGC
60.038
55.000
0.00
0.00
0.00
4.40
1645
1704
0.739813
GGTGTCGTACTGTGATGGCC
60.740
60.000
0.00
0.00
0.00
5.36
1646
1705
0.037697
GTGTCGTACTGTGATGGCCA
60.038
55.000
8.56
8.56
0.00
5.36
1647
1706
0.682292
TGTCGTACTGTGATGGCCAA
59.318
50.000
10.96
0.00
0.00
4.52
1648
1707
1.076332
GTCGTACTGTGATGGCCAAC
58.924
55.000
10.96
8.17
0.00
3.77
1649
1708
0.389296
TCGTACTGTGATGGCCAACG
60.389
55.000
10.96
14.13
0.00
4.10
1650
1709
0.669318
CGTACTGTGATGGCCAACGT
60.669
55.000
10.96
9.69
0.00
3.99
1651
1710
0.796312
GTACTGTGATGGCCAACGTG
59.204
55.000
10.96
4.13
0.00
4.49
1652
1711
0.394938
TACTGTGATGGCCAACGTGT
59.605
50.000
10.96
10.19
0.00
4.49
1657
1716
1.810151
GTGATGGCCAACGTGTATGTT
59.190
47.619
10.96
0.00
0.00
2.71
1659
1718
0.525761
ATGGCCAACGTGTATGTTGC
59.474
50.000
10.96
7.01
46.14
4.17
1705
1764
4.380867
CCTTGGTAAATGCTTTGGCTACTG
60.381
45.833
0.00
0.00
39.59
2.74
1727
1786
4.281941
TGGCCATCATCTATAGTCACTCAC
59.718
45.833
0.00
0.00
0.00
3.51
1728
1787
4.281941
GGCCATCATCTATAGTCACTCACA
59.718
45.833
0.00
0.00
0.00
3.58
1732
1791
8.090831
GCCATCATCTATAGTCACTCACAAATA
58.909
37.037
0.00
0.00
0.00
1.40
1746
1805
6.772716
CACTCACAAATATAGGGTTGGCTATT
59.227
38.462
0.00
0.00
0.00
1.73
1821
1880
4.534647
ATGTTATAGGGGGTTGCAATGA
57.465
40.909
0.59
0.00
0.00
2.57
1836
1895
6.019559
GGTTGCAATGAAAGAAACAAACTCTC
60.020
38.462
0.59
0.00
0.00
3.20
1837
1896
5.273170
TGCAATGAAAGAAACAAACTCTCG
58.727
37.500
0.00
0.00
0.00
4.04
1846
1907
1.053424
ACAAACTCTCGCACCCCTAA
58.947
50.000
0.00
0.00
0.00
2.69
1877
1938
5.774690
TGCCACTTTTCCTCTTTGTATCATT
59.225
36.000
0.00
0.00
0.00
2.57
1880
1941
7.661040
CCACTTTTCCTCTTTGTATCATTGTT
58.339
34.615
0.00
0.00
0.00
2.83
1899
1960
1.434188
TGATGGTGGTCACTTGTCCT
58.566
50.000
0.93
0.00
0.00
3.85
1908
1969
5.280317
GGTGGTCACTTGTCCTCCTATTTAA
60.280
44.000
6.41
0.00
35.17
1.52
1913
1974
6.814146
GTCACTTGTCCTCCTATTTAAGACAG
59.186
42.308
0.00
0.00
38.58
3.51
1915
1976
5.189934
ACTTGTCCTCCTATTTAAGACAGGG
59.810
44.000
0.00
0.00
38.46
4.45
1922
1983
6.014156
CCTCCTATTTAAGACAGGGGTGATAG
60.014
46.154
0.00
0.00
0.00
2.08
2006
2069
5.565592
TCCAATGAATAACACACATGCTC
57.434
39.130
0.00
0.00
0.00
4.26
2021
2084
3.006110
ACATGCTCACCAAAATCCAACTG
59.994
43.478
0.00
0.00
0.00
3.16
2027
2090
5.048083
GCTCACCAAAATCCAACTGTGATTA
60.048
40.000
0.00
0.00
32.83
1.75
2152
2218
7.841282
TTGGTTGGTCTAATTTATGGTTGAA
57.159
32.000
0.00
0.00
0.00
2.69
2163
2229
9.838339
CTAATTTATGGTTGAAGTCTAGGATGT
57.162
33.333
0.00
0.00
0.00
3.06
2181
2247
1.737236
TGTGTGCACGCCTTATTCATC
59.263
47.619
26.63
0.00
0.00
2.92
2182
2248
1.737236
GTGTGCACGCCTTATTCATCA
59.263
47.619
19.81
0.00
0.00
3.07
2235
2301
9.582223
GCTAAGCAAAACTATAACATCGTATTC
57.418
33.333
0.00
0.00
0.00
1.75
2236
2302
9.779237
CTAAGCAAAACTATAACATCGTATTCG
57.221
33.333
0.00
0.00
38.55
3.34
2317
2383
3.217017
CCCTTCGATCTCCGCCGA
61.217
66.667
0.00
0.00
38.37
5.54
2346
2412
1.484444
GGATTCGCCTCCCCTATGCT
61.484
60.000
0.00
0.00
0.00
3.79
2349
2415
1.271840
TTCGCCTCCCCTATGCTTGT
61.272
55.000
0.00
0.00
0.00
3.16
2357
2423
1.437573
CCTATGCTTGTCGCTCCGA
59.562
57.895
0.00
0.00
40.11
4.55
2368
2434
4.008933
GCTCCGACAGCTGGTGGT
62.009
66.667
19.93
0.00
45.83
4.16
2406
2472
4.158579
TGATGCCTCGGCTTAGATATGTAG
59.841
45.833
9.65
0.00
42.51
2.74
2416
2482
8.092687
TCGGCTTAGATATGTAGGGTTTTATTC
58.907
37.037
0.00
0.00
0.00
1.75
2426
2492
3.173151
AGGGTTTTATTCCTTGCAAGGG
58.827
45.455
38.60
23.32
46.47
3.95
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
50
51
7.330946
TGGTCGTGTTTTATTCAGTTCTCATAG
59.669
37.037
0.00
0.00
0.00
2.23
65
66
1.139058
AGCAGAGTCTGGTCGTGTTTT
59.861
47.619
19.05
0.00
37.71
2.43
81
82
4.433615
AGTGAATACGATACCACAAGCAG
58.566
43.478
0.00
0.00
32.35
4.24
152
153
8.125978
TGGTTAAGTTACTTAAGTAGCTGCTA
57.874
34.615
26.64
16.31
40.44
3.49
154
155
7.201617
CCATGGTTAAGTTACTTAAGTAGCTGC
60.202
40.741
26.64
19.85
40.44
5.25
160
161
7.325725
AGACCCATGGTTAAGTTACTTAAGT
57.674
36.000
16.74
13.68
36.73
2.24
161
162
7.120726
CCAAGACCCATGGTTAAGTTACTTAAG
59.879
40.741
16.74
7.67
36.73
1.85
162
163
6.943718
CCAAGACCCATGGTTAAGTTACTTAA
59.056
38.462
12.92
12.92
35.25
1.85
163
164
6.272792
TCCAAGACCCATGGTTAAGTTACTTA
59.727
38.462
11.73
0.03
39.09
2.24
164
165
5.073965
TCCAAGACCCATGGTTAAGTTACTT
59.926
40.000
11.73
2.32
39.09
2.24
165
166
4.600111
TCCAAGACCCATGGTTAAGTTACT
59.400
41.667
11.73
0.00
39.09
2.24
166
167
4.913784
TCCAAGACCCATGGTTAAGTTAC
58.086
43.478
11.73
0.00
39.09
2.50
167
168
5.586155
TTCCAAGACCCATGGTTAAGTTA
57.414
39.130
11.73
0.00
39.09
2.24
168
169
4.463050
TTCCAAGACCCATGGTTAAGTT
57.537
40.909
11.73
0.00
39.09
2.66
194
195
3.888930
ACCGAAATACCCTATGCAAATGG
59.111
43.478
0.00
0.00
0.00
3.16
205
206
1.029681
GGCCATTGACCGAAATACCC
58.970
55.000
0.00
0.00
0.00
3.69
266
267
1.448540
CTCTGGCGCTCGTTTCCAT
60.449
57.895
7.64
0.00
0.00
3.41
274
275
1.743958
TGAACTACTACTCTGGCGCTC
59.256
52.381
7.64
0.00
0.00
5.03
278
279
6.456501
TCTTTTTCTGAACTACTACTCTGGC
58.543
40.000
0.00
0.00
0.00
4.85
380
389
1.739562
GGTGCTCAAGGACTGCTCG
60.740
63.158
1.60
0.00
36.56
5.03
616
625
0.693049
GGCCCATCATCCCTTATCGT
59.307
55.000
0.00
0.00
0.00
3.73
664
676
1.686587
CTTGAAGGGGTTGGTGTTTCC
59.313
52.381
0.00
0.00
0.00
3.13
727
745
1.032794
GCGGATCCATTTTTCCCTCC
58.967
55.000
13.41
0.00
0.00
4.30
730
748
2.894858
TGGCGGATCCATTTTTCCC
58.105
52.632
13.41
0.56
40.72
3.97
974
1027
3.411517
CGTGCCCTCCCATTCCCT
61.412
66.667
0.00
0.00
0.00
4.20
1181
1240
4.704103
AGCGGCAGGTGGAGAGGA
62.704
66.667
1.45
0.00
0.00
3.71
1207
1266
3.474570
GCGGGAGGAGATGTGGCT
61.475
66.667
0.00
0.00
0.00
4.75
1208
1267
4.899239
CGCGGGAGGAGATGTGGC
62.899
72.222
0.00
0.00
0.00
5.01
1211
1270
3.148279
GGTCGCGGGAGGAGATGT
61.148
66.667
6.13
0.00
0.00
3.06
1287
1346
1.655654
CGCGAGCATGAGGACGTAG
60.656
63.158
0.00
0.00
0.00
3.51
1565
1624
6.037830
ACAAAAATGTTAATCCCGGTCGATAG
59.962
38.462
0.00
0.00
0.00
2.08
1594
1653
6.785337
AATCCAGCATCTCAATCAAATCAA
57.215
33.333
0.00
0.00
0.00
2.57
1595
1654
6.785337
AAATCCAGCATCTCAATCAAATCA
57.215
33.333
0.00
0.00
0.00
2.57
1596
1655
7.938715
ACTAAATCCAGCATCTCAATCAAATC
58.061
34.615
0.00
0.00
0.00
2.17
1597
1656
7.893124
ACTAAATCCAGCATCTCAATCAAAT
57.107
32.000
0.00
0.00
0.00
2.32
1598
1657
7.177216
ACAACTAAATCCAGCATCTCAATCAAA
59.823
33.333
0.00
0.00
0.00
2.69
1631
1690
0.669318
ACGTTGGCCATCACAGTACG
60.669
55.000
19.47
19.47
33.54
3.67
1639
1698
1.467374
GCAACATACACGTTGGCCATC
60.467
52.381
6.09
4.57
45.21
3.51
1640
1699
0.525761
GCAACATACACGTTGGCCAT
59.474
50.000
6.09
0.00
45.21
4.40
1641
1700
1.953017
GCAACATACACGTTGGCCA
59.047
52.632
0.00
0.00
45.21
5.36
1642
1701
4.859784
GCAACATACACGTTGGCC
57.140
55.556
0.00
0.00
45.21
5.36
1644
1703
1.154301
GCGGCAACATACACGTTGG
60.154
57.895
5.99
0.00
45.21
3.77
1646
1705
1.663643
CATAGCGGCAACATACACGTT
59.336
47.619
1.45
0.00
0.00
3.99
1647
1706
1.286501
CATAGCGGCAACATACACGT
58.713
50.000
1.45
0.00
0.00
4.49
1648
1707
1.286501
ACATAGCGGCAACATACACG
58.713
50.000
1.45
0.00
0.00
4.49
1649
1708
4.750098
AGATAACATAGCGGCAACATACAC
59.250
41.667
1.45
0.00
0.00
2.90
1650
1709
4.956085
AGATAACATAGCGGCAACATACA
58.044
39.130
1.45
0.00
0.00
2.29
1651
1710
4.988540
TGAGATAACATAGCGGCAACATAC
59.011
41.667
1.45
0.00
0.00
2.39
1652
1711
5.208463
TGAGATAACATAGCGGCAACATA
57.792
39.130
1.45
0.00
0.00
2.29
1657
1716
5.643348
CCATTAATGAGATAACATAGCGGCA
59.357
40.000
17.23
0.00
0.00
5.69
1659
1718
5.065218
GGCCATTAATGAGATAACATAGCGG
59.935
44.000
17.23
0.00
0.00
5.52
1705
1764
4.281941
TGTGAGTGACTATAGATGATGGCC
59.718
45.833
6.78
0.00
0.00
5.36
1756
1815
7.830201
ACGTAAAGAGAGAGGAGATAGAAGAAA
59.170
37.037
0.00
0.00
0.00
2.52
1759
1818
7.562454
AACGTAAAGAGAGAGGAGATAGAAG
57.438
40.000
0.00
0.00
0.00
2.85
1760
1819
7.941431
AAACGTAAAGAGAGAGGAGATAGAA
57.059
36.000
0.00
0.00
0.00
2.10
1799
1858
5.654901
TCATTGCAACCCCCTATAACATA
57.345
39.130
0.00
0.00
0.00
2.29
1805
1864
3.756082
TCTTTCATTGCAACCCCCTAT
57.244
42.857
0.00
0.00
0.00
2.57
1806
1865
3.534357
TTCTTTCATTGCAACCCCCTA
57.466
42.857
0.00
0.00
0.00
3.53
1807
1866
2.368548
GTTTCTTTCATTGCAACCCCCT
59.631
45.455
0.00
0.00
0.00
4.79
1808
1867
2.103941
TGTTTCTTTCATTGCAACCCCC
59.896
45.455
0.00
0.00
0.00
5.40
1809
1868
3.467374
TGTTTCTTTCATTGCAACCCC
57.533
42.857
0.00
0.00
0.00
4.95
1821
1880
2.357952
GGGTGCGAGAGTTTGTTTCTTT
59.642
45.455
0.00
0.00
0.00
2.52
1836
1895
0.663153
GCAAGCTTATTAGGGGTGCG
59.337
55.000
0.00
0.00
0.00
5.34
1837
1896
1.032794
GGCAAGCTTATTAGGGGTGC
58.967
55.000
0.00
0.00
0.00
5.01
1846
1907
4.039603
AGAGGAAAAGTGGCAAGCTTAT
57.960
40.909
0.00
0.00
0.00
1.73
1877
1938
2.571212
GACAAGTGACCACCATCAACA
58.429
47.619
0.00
0.00
0.00
3.33
1880
1941
1.347707
GAGGACAAGTGACCACCATCA
59.652
52.381
2.72
0.00
32.26
3.07
1899
1960
5.844516
CCTATCACCCCTGTCTTAAATAGGA
59.155
44.000
0.00
0.00
38.52
2.94
1908
1969
1.646447
TGAGACCTATCACCCCTGTCT
59.354
52.381
0.00
0.00
38.90
3.41
1913
1974
0.470341
GCCTTGAGACCTATCACCCC
59.530
60.000
0.00
0.00
0.00
4.95
1915
1976
1.112113
TCGCCTTGAGACCTATCACC
58.888
55.000
0.00
0.00
0.00
4.02
1922
1983
1.734465
CAAACTCATCGCCTTGAGACC
59.266
52.381
15.44
0.00
44.88
3.85
1976
2037
5.652014
GTGTGTTATTCATTGGAATGGAGGA
59.348
40.000
0.00
0.00
43.47
3.71
2006
2069
9.874205
ATTTATAATCACAGTTGGATTTTGGTG
57.126
29.630
0.00
0.00
36.45
4.17
2072
2138
9.086336
TGTTGATTCACATTGAAAAGAAGTTTC
57.914
29.630
0.00
0.00
45.13
2.78
2122
2188
9.707957
ACCATAAATTAGACCAACCAAATATGA
57.292
29.630
0.00
0.00
0.00
2.15
2129
2195
7.007723
ACTTCAACCATAAATTAGACCAACCA
58.992
34.615
0.00
0.00
0.00
3.67
2131
2197
8.336801
AGACTTCAACCATAAATTAGACCAAC
57.663
34.615
0.00
0.00
0.00
3.77
2132
2198
9.667107
CTAGACTTCAACCATAAATTAGACCAA
57.333
33.333
0.00
0.00
0.00
3.67
2133
2199
8.265055
CCTAGACTTCAACCATAAATTAGACCA
58.735
37.037
0.00
0.00
0.00
4.02
2152
2218
0.108615
GCGTGCACACATCCTAGACT
60.109
55.000
18.64
0.00
0.00
3.24
2163
2229
2.106477
TGATGAATAAGGCGTGCACA
57.894
45.000
18.64
0.00
0.00
4.57
2230
2296
8.995906
GTTGTGTATATTGTTGCTTTCGAATAC
58.004
33.333
0.00
0.00
0.00
1.89
2235
2301
7.851822
AAAGTTGTGTATATTGTTGCTTTCG
57.148
32.000
0.00
0.00
0.00
3.46
2317
2383
1.609555
GAGGCGAATCCATAGACTCGT
59.390
52.381
0.00
0.00
43.44
4.18
2357
2423
4.320456
CTCGCCACCACCAGCTGT
62.320
66.667
13.81
0.00
0.00
4.40
2368
2434
0.758734
CATCAGGAATACCCTCGCCA
59.241
55.000
0.00
0.00
45.60
5.69
2371
2437
1.001406
GAGGCATCAGGAATACCCTCG
59.999
57.143
0.00
0.00
45.60
4.63
2385
2451
3.449018
CCTACATATCTAAGCCGAGGCAT
59.551
47.826
17.18
7.02
44.88
4.40
2416
2482
2.753043
AGCATCGCCCTTGCAAGG
60.753
61.111
34.60
34.60
46.06
3.61
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.