Multiple sequence alignment - TraesCS3B01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G340600 chr3B 100.000 4906 0 0 1 4906 547127409 547122504 0.000000e+00 9060.0
1 TraesCS3B01G340600 chr3B 91.743 109 9 0 4433 4541 51801855 51801747 8.510000e-33 152.0
2 TraesCS3B01G340600 chr3A 90.940 2086 135 31 20 2085 531078612 531080663 0.000000e+00 2756.0
3 TraesCS3B01G340600 chr3A 89.180 1220 67 30 3268 4438 531081698 531082901 0.000000e+00 1461.0
4 TraesCS3B01G340600 chr3A 95.034 725 35 1 2187 2910 531080723 531081447 0.000000e+00 1138.0
5 TraesCS3B01G340600 chr3A 91.200 375 29 3 4532 4904 531082897 531083269 1.580000e-139 507.0
6 TraesCS3B01G340600 chr3A 90.058 171 15 1 3081 3251 531081477 531081645 2.300000e-53 220.0
7 TraesCS3B01G340600 chr3A 94.964 139 4 2 2895 3033 52198991 52198856 1.070000e-51 215.0
8 TraesCS3B01G340600 chr3A 93.137 102 7 0 4435 4536 743872049 743872150 3.060000e-32 150.0
9 TraesCS3B01G340600 chr3D 89.508 1220 97 22 877 2085 419907160 419905961 0.000000e+00 1515.0
10 TraesCS3B01G340600 chr3D 92.998 914 43 14 3339 4233 419904772 419903861 0.000000e+00 1314.0
11 TraesCS3B01G340600 chr3D 93.010 887 40 10 12 893 419908043 419907174 0.000000e+00 1275.0
12 TraesCS3B01G340600 chr3D 95.718 724 31 0 2187 2910 419905896 419905173 0.000000e+00 1166.0
13 TraesCS3B01G340600 chr3D 93.684 380 16 5 4531 4906 419898508 419898133 3.320000e-156 562.0
14 TraesCS3B01G340600 chr3D 92.982 171 12 0 3081 3251 419905143 419904973 2.930000e-62 250.0
15 TraesCS3B01G340600 chr3D 86.747 83 6 3 2078 2156 474998187 474998268 2.430000e-13 87.9
16 TraesCS3B01G340600 chr3D 88.732 71 5 2 2084 2152 571378626 571378557 3.150000e-12 84.2
17 TraesCS3B01G340600 chr3D 85.915 71 8 2 2077 2145 107680166 107680236 1.890000e-09 75.0
18 TraesCS3B01G340600 chr3D 93.333 45 2 1 2144 2187 419905962 419905918 1.140000e-06 65.8
19 TraesCS3B01G340600 chr6B 96.947 131 4 0 2904 3034 81012014 81012144 2.300000e-53 220.0
20 TraesCS3B01G340600 chr6B 94.326 141 4 4 2907 3043 39329524 39329384 3.850000e-51 213.0
21 TraesCS3B01G340600 chr6B 93.137 102 3 1 4437 4538 7203276 7203179 3.960000e-31 147.0
22 TraesCS3B01G340600 chr6B 91.026 78 4 1 2083 2157 195461926 195461849 8.690000e-18 102.0
23 TraesCS3B01G340600 chr5D 96.970 132 3 1 2902 3033 90314139 90314269 2.300000e-53 220.0
24 TraesCS3B01G340600 chr5D 90.000 70 6 1 2084 2152 26787199 26787130 6.760000e-14 89.8
25 TraesCS3B01G340600 chr5A 96.269 134 5 0 2907 3040 60444279 60444412 2.300000e-53 220.0
26 TraesCS3B01G340600 chr5A 95.522 134 6 0 2900 3033 46616321 46616188 1.070000e-51 215.0
27 TraesCS3B01G340600 chr4A 94.366 142 6 2 2904 3043 177639142 177639001 2.970000e-52 217.0
28 TraesCS3B01G340600 chr4A 92.086 139 9 2 2896 3033 223857972 223857835 1.390000e-45 195.0
29 TraesCS3B01G340600 chr4A 91.176 68 2 1 2084 2147 552149472 552149405 6.760000e-14 89.8
30 TraesCS3B01G340600 chr7B 93.525 139 8 1 2907 3045 369812153 369812016 6.440000e-49 206.0
31 TraesCS3B01G340600 chr2B 97.030 101 2 1 4437 4536 96089439 96089339 8.450000e-38 169.0
32 TraesCS3B01G340600 chr2B 94.118 102 5 1 4436 4536 11466183 11466284 2.360000e-33 154.0
33 TraesCS3B01G340600 chr2B 91.228 114 8 2 4433 4544 673594506 673594393 2.360000e-33 154.0
34 TraesCS3B01G340600 chr2B 93.137 102 5 2 4437 4536 245318502 245318401 1.100000e-31 148.0
35 TraesCS3B01G340600 chr5B 94.231 104 4 2 4435 4537 696154631 696154529 1.830000e-34 158.0
36 TraesCS3B01G340600 chr5B 87.342 79 8 2 2078 2154 308566472 308566550 6.760000e-14 89.8
37 TraesCS3B01G340600 chr6A 92.727 110 4 3 4431 4536 577701424 577701315 6.580000e-34 156.0
38 TraesCS3B01G340600 chr7A 89.474 76 5 3 2080 2153 679878162 679878088 5.230000e-15 93.5
39 TraesCS3B01G340600 chr7A 88.312 77 5 4 2081 2154 735744231 735744306 6.760000e-14 89.8
40 TraesCS3B01G340600 chr7A 88.312 77 5 4 2081 2154 735777128 735777203 6.760000e-14 89.8
41 TraesCS3B01G340600 chr4D 93.548 62 3 1 2084 2145 389209246 389209186 1.880000e-14 91.6
42 TraesCS3B01G340600 chr4D 89.552 67 2 2 2084 2146 372358009 372358074 4.070000e-11 80.5
43 TraesCS3B01G340600 chr1B 91.176 68 4 1 2080 2145 24605083 24605016 1.880000e-14 91.6
44 TraesCS3B01G340600 chr4B 89.041 73 6 2 2083 2154 109408599 109408528 6.760000e-14 89.8
45 TraesCS3B01G340600 chr2A 88.000 75 6 3 2081 2153 27422804 27422731 8.750000e-13 86.1
46 TraesCS3B01G340600 chr1D 89.855 69 3 3 2084 2148 386424749 386424681 8.750000e-13 86.1
47 TraesCS3B01G340600 chr1D 87.324 71 4 4 2079 2145 386424680 386424749 5.270000e-10 76.8
48 TraesCS3B01G340600 chr1D 95.745 47 1 1 2105 2151 14482453 14482408 1.890000e-09 75.0
49 TraesCS3B01G340600 chr1D 97.619 42 1 0 2105 2146 407873379 407873420 6.810000e-09 73.1
50 TraesCS3B01G340600 chr1D 93.750 48 2 1 2105 2152 225936891 225936845 2.450000e-08 71.3
51 TraesCS3B01G340600 chr1D 93.750 48 2 1 2105 2152 225943981 225943935 2.450000e-08 71.3
52 TraesCS3B01G340600 chr1D 93.750 48 2 1 2105 2152 225960450 225960404 2.450000e-08 71.3
53 TraesCS3B01G340600 chr1A 90.476 63 6 0 2085 2147 1346768 1346830 3.150000e-12 84.2
54 TraesCS3B01G340600 chr2D 90.476 63 4 2 2084 2146 124806620 124806560 1.130000e-11 82.4
55 TraesCS3B01G340600 chr2D 86.842 76 4 1 2083 2152 334331510 334331585 4.070000e-11 80.5
56 TraesCS3B01G340600 chrUn 89.394 66 4 2 2084 2148 422881451 422881514 4.070000e-11 80.5
57 TraesCS3B01G340600 chrUn 86.567 67 5 1 2083 2145 34213297 34213231 2.450000e-08 71.3
58 TraesCS3B01G340600 chrUn 92.157 51 3 1 2105 2155 83375479 83375430 2.450000e-08 71.3
59 TraesCS3B01G340600 chrUn 97.561 41 1 0 2106 2146 92722778 92722738 2.450000e-08 71.3
60 TraesCS3B01G340600 chrUn 95.349 43 2 0 2106 2148 108661243 108661285 8.810000e-08 69.4
61 TraesCS3B01G340600 chrUn 95.349 43 1 1 2105 2147 314370612 314370571 3.170000e-07 67.6
62 TraesCS3B01G340600 chrUn 86.885 61 7 1 2085 2145 422881510 422881451 3.170000e-07 67.6
63 TraesCS3B01G340600 chrUn 95.122 41 2 0 2106 2146 48471420 48471380 1.140000e-06 65.8
64 TraesCS3B01G340600 chrUn 95.122 41 2 0 2106 2146 48498198 48498158 1.140000e-06 65.8
65 TraesCS3B01G340600 chrUn 95.238 42 1 1 2105 2146 71312896 71312856 1.140000e-06 65.8
66 TraesCS3B01G340600 chrUn 91.667 48 3 1 2105 2152 194666151 194666105 1.140000e-06 65.8
67 TraesCS3B01G340600 chr7D 88.235 68 4 3 2082 2146 95064747 95064813 1.460000e-10 78.7
68 TraesCS3B01G340600 chr6D 88.060 67 4 3 2083 2146 14725243 14725178 5.270000e-10 76.8
69 TraesCS3B01G340600 chr6D 89.062 64 3 4 2093 2154 105570683 105570622 5.270000e-10 76.8
70 TraesCS3B01G340600 chr6D 87.879 66 3 1 2087 2147 368756640 368756575 6.810000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G340600 chr3B 547122504 547127409 4905 True 9060.000000 9060 100.000000 1 4906 1 chr3B.!!$R2 4905
1 TraesCS3B01G340600 chr3A 531078612 531083269 4657 False 1216.400000 2756 91.282400 20 4904 5 chr3A.!!$F2 4884
2 TraesCS3B01G340600 chr3D 419903861 419908043 4182 True 930.966667 1515 92.924833 12 4233 6 chr3D.!!$R3 4221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 942 0.392998 CCACGGGATCTTTGTGAGGG 60.393 60.0 12.15 0.0 35.66 4.30 F
1692 1750 0.625849 ATCTTTGGATTGTCCCGGCT 59.374 50.0 0.00 0.0 35.03 5.52 F
2922 3006 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1821 0.610174 AGCAAGATTGTCCTCGCAGA 59.390 50.0 0.0 0.0 0.00 4.26 R
3486 3701 0.250513 CAACCTCCCCACTAGCAGTC 59.749 60.0 0.0 0.0 0.00 3.51 R
4588 4840 0.029300 GCGCCATTGTTATCGTGCAT 59.971 50.0 0.0 0.0 30.06 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.078226 CGTTGGCCATCACAGTACG 58.922 57.895 6.09 8.07 0.00 3.67
51 52 7.177216 ACAACTAAATCCAGCATCTCAATCAAA 59.823 33.333 0.00 0.00 0.00 2.69
52 53 7.893124 ACTAAATCCAGCATCTCAATCAAAT 57.107 32.000 0.00 0.00 0.00 2.32
53 54 7.938715 ACTAAATCCAGCATCTCAATCAAATC 58.061 34.615 0.00 0.00 0.00 2.17
54 55 6.785337 AAATCCAGCATCTCAATCAAATCA 57.215 33.333 0.00 0.00 0.00 2.57
55 56 6.785337 AATCCAGCATCTCAATCAAATCAA 57.215 33.333 0.00 0.00 0.00 2.57
84 85 6.037830 ACAAAAATGTTAATCCCGGTCGATAG 59.962 38.462 0.00 0.00 0.00 2.08
362 363 1.655654 CGCGAGCATGAGGACGTAG 60.656 63.158 0.00 0.00 0.00 3.51
438 439 3.148279 GGTCGCGGGAGGAGATGT 61.148 66.667 6.13 0.00 0.00 3.06
441 442 4.899239 CGCGGGAGGAGATGTGGC 62.899 72.222 0.00 0.00 0.00 5.01
442 443 3.474570 GCGGGAGGAGATGTGGCT 61.475 66.667 0.00 0.00 0.00 4.75
468 469 4.704103 AGCGGCAGGTGGAGAGGA 62.704 66.667 1.45 0.00 0.00 3.71
675 682 3.411517 CGTGCCCTCCCATTCCCT 61.412 66.667 0.00 0.00 0.00 4.20
899 942 0.392998 CCACGGGATCTTTGTGAGGG 60.393 60.000 12.15 0.00 35.66 4.30
919 962 2.894858 TGGCGGATCCATTTTTCCC 58.105 52.632 13.41 0.56 40.72 3.97
922 965 1.032794 GCGGATCCATTTTTCCCTCC 58.967 55.000 13.41 0.00 0.00 4.30
1033 1082 0.693049 GGCCCATCATCCCTTATCGT 59.307 55.000 0.00 0.00 0.00 3.73
1269 1318 1.739562 GGTGCTCAAGGACTGCTCG 60.740 63.158 1.60 0.00 36.56 5.03
1371 1428 6.456501 TCTTTTTCTGAACTACTACTCTGGC 58.543 40.000 0.00 0.00 0.00 4.85
1375 1432 1.743958 TGAACTACTACTCTGGCGCTC 59.256 52.381 7.64 0.00 0.00 5.03
1383 1440 1.448540 CTCTGGCGCTCGTTTCCAT 60.449 57.895 7.64 0.00 0.00 3.41
1444 1501 1.029681 GGCCATTGACCGAAATACCC 58.970 55.000 0.00 0.00 0.00 3.69
1455 1512 3.888930 ACCGAAATACCCTATGCAAATGG 59.111 43.478 0.00 0.00 0.00 3.16
1481 1538 4.463050 TTCCAAGACCCATGGTTAAGTT 57.537 40.909 11.73 0.00 39.09 2.66
1482 1539 5.586155 TTCCAAGACCCATGGTTAAGTTA 57.414 39.130 11.73 0.00 39.09 2.24
1483 1540 4.913784 TCCAAGACCCATGGTTAAGTTAC 58.086 43.478 11.73 0.00 39.09 2.50
1484 1541 4.600111 TCCAAGACCCATGGTTAAGTTACT 59.400 41.667 11.73 0.00 39.09 2.24
1485 1542 5.073965 TCCAAGACCCATGGTTAAGTTACTT 59.926 40.000 11.73 2.32 39.09 2.24
1486 1543 6.272792 TCCAAGACCCATGGTTAAGTTACTTA 59.727 38.462 11.73 0.03 39.09 2.24
1487 1544 6.943718 CCAAGACCCATGGTTAAGTTACTTAA 59.056 38.462 12.92 12.92 35.25 1.85
1488 1545 7.120726 CCAAGACCCATGGTTAAGTTACTTAAG 59.879 40.741 16.74 7.67 36.73 1.85
1489 1546 7.325725 AGACCCATGGTTAAGTTACTTAAGT 57.674 36.000 16.74 13.68 36.73 2.24
1495 1552 7.201617 CCATGGTTAAGTTACTTAAGTAGCTGC 60.202 40.741 26.64 19.85 40.44 5.25
1497 1554 8.125978 TGGTTAAGTTACTTAAGTAGCTGCTA 57.874 34.615 26.64 16.31 40.44 3.49
1568 1625 4.433615 AGTGAATACGATACCACAAGCAG 58.566 43.478 0.00 0.00 32.35 4.24
1584 1641 1.139058 AGCAGAGTCTGGTCGTGTTTT 59.861 47.619 19.05 0.00 37.71 2.43
1599 1656 7.330946 TGGTCGTGTTTTATTCAGTTCTCATAG 59.669 37.037 0.00 0.00 0.00 2.23
1666 1723 8.533657 TCAGAAATCAAAATGCTGAATGGTATT 58.466 29.630 0.00 0.00 33.11 1.89
1692 1750 0.625849 ATCTTTGGATTGTCCCGGCT 59.374 50.000 0.00 0.00 35.03 5.52
1708 1766 1.039856 GGCTTTTCCTTTGAGCACCA 58.960 50.000 0.00 0.00 38.14 4.17
1748 1806 5.196695 GACCTAGGAATGGCTCAGAATTTT 58.803 41.667 17.98 0.00 0.00 1.82
1767 1825 8.084684 AGAATTTTCTGAGTTTATGGTTTCTGC 58.915 33.333 0.00 0.00 35.89 4.26
1768 1826 5.356882 TTTCTGAGTTTATGGTTTCTGCG 57.643 39.130 0.00 0.00 0.00 5.18
1769 1827 4.265904 TCTGAGTTTATGGTTTCTGCGA 57.734 40.909 0.00 0.00 0.00 5.10
1770 1828 4.245660 TCTGAGTTTATGGTTTCTGCGAG 58.754 43.478 0.00 0.00 0.00 5.03
1771 1829 3.334691 TGAGTTTATGGTTTCTGCGAGG 58.665 45.455 0.00 0.00 0.00 4.63
1772 1830 3.007506 TGAGTTTATGGTTTCTGCGAGGA 59.992 43.478 0.00 0.00 0.00 3.71
1774 1832 3.071479 GTTTATGGTTTCTGCGAGGACA 58.929 45.455 0.00 0.00 0.00 4.02
1775 1833 3.410631 TTATGGTTTCTGCGAGGACAA 57.589 42.857 0.00 0.00 0.00 3.18
1776 1834 2.496899 ATGGTTTCTGCGAGGACAAT 57.503 45.000 0.00 0.00 0.00 2.71
1777 1835 1.808411 TGGTTTCTGCGAGGACAATC 58.192 50.000 0.00 0.00 0.00 2.67
1778 1836 1.347707 TGGTTTCTGCGAGGACAATCT 59.652 47.619 0.00 0.00 0.00 2.40
1779 1837 2.224523 TGGTTTCTGCGAGGACAATCTT 60.225 45.455 0.00 0.00 0.00 2.40
1780 1838 2.160417 GGTTTCTGCGAGGACAATCTTG 59.840 50.000 0.00 0.00 0.00 3.02
1781 1839 1.442769 TTCTGCGAGGACAATCTTGC 58.557 50.000 0.00 0.00 42.87 4.01
1782 1840 0.610174 TCTGCGAGGACAATCTTGCT 59.390 50.000 5.79 0.00 42.96 3.91
1783 1841 1.002430 TCTGCGAGGACAATCTTGCTT 59.998 47.619 5.79 0.00 42.96 3.91
1784 1842 1.129998 CTGCGAGGACAATCTTGCTTG 59.870 52.381 5.79 0.00 42.96 4.01
1822 1881 5.116084 TCCATTCAGGAACCAATAGGAAG 57.884 43.478 0.00 0.00 45.65 3.46
1870 1929 3.535280 TCATGTAGCGCAAATACCAGA 57.465 42.857 11.47 1.56 0.00 3.86
1876 1935 4.941263 TGTAGCGCAAATACCAGAATCTTT 59.059 37.500 11.47 0.00 0.00 2.52
1879 1938 4.941263 AGCGCAAATACCAGAATCTTTACA 59.059 37.500 11.47 0.00 0.00 2.41
1901 1960 6.563422 ACATGTAAATGAGCAATTACGCATT 58.437 32.000 0.00 2.12 41.09 3.56
1903 1962 7.643764 ACATGTAAATGAGCAATTACGCATTAC 59.356 33.333 7.91 7.53 38.84 1.89
1942 2001 3.937814 TCAAGCACATTCGACTATTGGT 58.062 40.909 0.00 0.00 0.00 3.67
1946 2005 2.355756 GCACATTCGACTATTGGTGCAT 59.644 45.455 9.43 0.00 36.68 3.96
1974 2033 2.221749 CCAGATCGACATGGTAATTGCG 59.778 50.000 9.17 0.00 0.00 4.85
1981 2040 3.115554 GACATGGTAATTGCGCATTTCC 58.884 45.455 19.84 19.00 33.74 3.13
1982 2041 2.495270 ACATGGTAATTGCGCATTTCCA 59.505 40.909 24.72 24.72 44.16 3.53
2017 2076 9.311916 TGTTCAACTTCAACCTGAATAAAAATG 57.688 29.630 0.00 0.00 35.59 2.32
2090 2150 8.792830 TCTGGTATTGTTACAATATACTCCCT 57.207 34.615 19.02 0.00 0.00 4.20
2091 2151 8.867097 TCTGGTATTGTTACAATATACTCCCTC 58.133 37.037 19.02 5.55 0.00 4.30
2092 2152 8.792830 TGGTATTGTTACAATATACTCCCTCT 57.207 34.615 19.02 0.00 0.00 3.69
2093 2153 8.647796 TGGTATTGTTACAATATACTCCCTCTG 58.352 37.037 19.02 0.00 0.00 3.35
2094 2154 8.648693 GGTATTGTTACAATATACTCCCTCTGT 58.351 37.037 19.02 0.00 0.00 3.41
2095 2155 9.694137 GTATTGTTACAATATACTCCCTCTGTC 57.306 37.037 19.02 0.56 0.00 3.51
2096 2156 6.726490 TGTTACAATATACTCCCTCTGTCC 57.274 41.667 0.00 0.00 0.00 4.02
2097 2157 5.601313 TGTTACAATATACTCCCTCTGTCCC 59.399 44.000 0.00 0.00 0.00 4.46
2098 2158 4.280789 ACAATATACTCCCTCTGTCCCA 57.719 45.455 0.00 0.00 0.00 4.37
2099 2159 4.631234 ACAATATACTCCCTCTGTCCCAA 58.369 43.478 0.00 0.00 0.00 4.12
2100 2160 5.036916 ACAATATACTCCCTCTGTCCCAAA 58.963 41.667 0.00 0.00 0.00 3.28
2101 2161 5.491078 ACAATATACTCCCTCTGTCCCAAAA 59.509 40.000 0.00 0.00 0.00 2.44
2102 2162 6.160459 ACAATATACTCCCTCTGTCCCAAAAT 59.840 38.462 0.00 0.00 0.00 1.82
2103 2163 7.349859 ACAATATACTCCCTCTGTCCCAAAATA 59.650 37.037 0.00 0.00 0.00 1.40
2104 2164 7.947782 ATATACTCCCTCTGTCCCAAAATAA 57.052 36.000 0.00 0.00 0.00 1.40
2105 2165 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2106 2166 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
2107 2167 5.098663 ACTCCCTCTGTCCCAAAATAAGTA 58.901 41.667 0.00 0.00 0.00 2.24
2108 2168 5.045797 ACTCCCTCTGTCCCAAAATAAGTAC 60.046 44.000 0.00 0.00 0.00 2.73
2109 2169 5.098663 TCCCTCTGTCCCAAAATAAGTACT 58.901 41.667 0.00 0.00 0.00 2.73
2110 2170 6.266080 TCCCTCTGTCCCAAAATAAGTACTA 58.734 40.000 0.00 0.00 0.00 1.82
2111 2171 6.731919 TCCCTCTGTCCCAAAATAAGTACTAA 59.268 38.462 0.00 0.00 0.00 2.24
2112 2172 7.238096 TCCCTCTGTCCCAAAATAAGTACTAAA 59.762 37.037 0.00 0.00 0.00 1.85
2113 2173 7.553044 CCCTCTGTCCCAAAATAAGTACTAAAG 59.447 40.741 0.00 0.00 0.00 1.85
2114 2174 8.101419 CCTCTGTCCCAAAATAAGTACTAAAGT 58.899 37.037 0.00 0.00 0.00 2.66
2115 2175 9.503399 CTCTGTCCCAAAATAAGTACTAAAGTT 57.497 33.333 0.00 0.00 0.00 2.66
2133 2193 9.856162 ACTAAAGTTAAGACACTTATTTTGGGA 57.144 29.630 0.00 0.00 35.87 4.37
2135 2195 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
2136 2196 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
2137 2197 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2138 2198 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2139 2199 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2140 2200 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2141 2201 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2142 2202 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2143 2203 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2144 2204 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2179 2239 7.281774 AGCAGACTGATACAAAATATGGTTCTG 59.718 37.037 6.65 0.00 0.00 3.02
2180 2240 7.280876 GCAGACTGATACAAAATATGGTTCTGA 59.719 37.037 6.65 0.00 0.00 3.27
2208 2291 6.566197 ATTTCTCTTTGCTTACTTGGACTG 57.434 37.500 0.00 0.00 0.00 3.51
2211 2294 3.754965 TCTTTGCTTACTTGGACTGCAT 58.245 40.909 0.00 0.00 33.50 3.96
2272 2355 6.515035 CGGGATGCTAACTTCTTGTTCTTTTT 60.515 38.462 0.00 0.00 39.89 1.94
2426 2510 2.710377 AGAACGCATTATCAAGTGGCA 58.290 42.857 0.00 0.00 0.00 4.92
2433 2517 4.678287 CGCATTATCAAGTGGCATTGAATC 59.322 41.667 13.63 0.00 42.21 2.52
2498 2582 3.019933 TGCAAGCGTCCCAAATTAAAC 57.980 42.857 0.00 0.00 0.00 2.01
2527 2611 5.187687 TCTGCTGCATATTGAATTCTGTCA 58.812 37.500 1.31 0.00 0.00 3.58
2553 2637 1.604593 GCAGGTTGTGATGCCCACT 60.605 57.895 7.67 0.00 45.86 4.00
2579 2663 1.173043 TCCGATGTTGCATTTGGTCC 58.827 50.000 0.00 0.00 0.00 4.46
2737 2821 6.016360 CACAAGGTTCACAAACATCCTTCATA 60.016 38.462 0.00 0.00 36.52 2.15
2915 2999 8.252624 AGTTTCTAATAAGATGTACTCCCTCC 57.747 38.462 0.00 0.00 0.00 4.30
2916 3000 6.896021 TTCTAATAAGATGTACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
2917 3001 5.950023 TCTAATAAGATGTACTCCCTCCGT 58.050 41.667 0.00 0.00 0.00 4.69
2918 3002 6.002704 TCTAATAAGATGTACTCCCTCCGTC 58.997 44.000 0.00 0.00 0.00 4.79
2919 3003 1.777941 AAGATGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2920 3004 0.465824 AGATGTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
2921 3005 0.465097 GATGTACTCCCTCCGTCCGA 60.465 60.000 0.00 0.00 0.00 4.55
2922 3006 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
2923 3007 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
2924 3008 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2925 3009 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2926 3010 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2927 3011 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2928 3012 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2929 3013 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2930 3014 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2931 3015 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2932 3016 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2933 3017 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2934 3018 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2935 3019 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2936 3020 3.000078 CCGTCCGAAAATACTTGTCATCG 60.000 47.826 0.00 0.00 0.00 3.84
2937 3021 3.855379 CGTCCGAAAATACTTGTCATCGA 59.145 43.478 0.00 0.00 32.38 3.59
2938 3022 4.325204 CGTCCGAAAATACTTGTCATCGAA 59.675 41.667 0.00 0.00 32.38 3.71
2939 3023 5.164031 CGTCCGAAAATACTTGTCATCGAAA 60.164 40.000 0.00 0.00 32.38 3.46
2940 3024 6.455113 CGTCCGAAAATACTTGTCATCGAAAT 60.455 38.462 0.00 0.00 32.38 2.17
2941 3025 6.682863 GTCCGAAAATACTTGTCATCGAAATG 59.317 38.462 0.00 0.00 32.38 2.32
2942 3026 5.965334 CCGAAAATACTTGTCATCGAAATGG 59.035 40.000 0.00 0.00 33.42 3.16
2943 3027 6.183360 CCGAAAATACTTGTCATCGAAATGGA 60.183 38.462 0.00 0.00 33.42 3.41
2944 3028 7.409697 CGAAAATACTTGTCATCGAAATGGAT 58.590 34.615 0.00 0.00 33.42 3.41
2945 3029 8.547894 CGAAAATACTTGTCATCGAAATGGATA 58.452 33.333 0.00 0.00 33.42 2.59
2951 3035 7.538575 ACTTGTCATCGAAATGGATAAAAAGG 58.461 34.615 0.00 0.00 33.42 3.11
2952 3036 6.449635 TGTCATCGAAATGGATAAAAAGGG 57.550 37.500 0.00 0.00 33.42 3.95
2953 3037 6.184068 TGTCATCGAAATGGATAAAAAGGGA 58.816 36.000 0.00 0.00 33.42 4.20
2954 3038 6.094881 TGTCATCGAAATGGATAAAAAGGGAC 59.905 38.462 0.00 0.00 33.42 4.46
2955 3039 5.295787 TCATCGAAATGGATAAAAAGGGACG 59.704 40.000 0.00 0.00 33.42 4.79
2956 3040 4.581868 TCGAAATGGATAAAAAGGGACGT 58.418 39.130 0.00 0.00 0.00 4.34
2957 3041 5.732633 TCGAAATGGATAAAAAGGGACGTA 58.267 37.500 0.00 0.00 0.00 3.57
2958 3042 6.350906 TCGAAATGGATAAAAAGGGACGTAT 58.649 36.000 0.00 0.00 0.00 3.06
2959 3043 6.480981 TCGAAATGGATAAAAAGGGACGTATC 59.519 38.462 0.00 0.00 0.00 2.24
2960 3044 6.482308 CGAAATGGATAAAAAGGGACGTATCT 59.518 38.462 0.00 0.00 0.00 1.98
2961 3045 7.654520 CGAAATGGATAAAAAGGGACGTATCTA 59.345 37.037 0.00 0.00 0.00 1.98
2962 3046 8.904099 AAATGGATAAAAAGGGACGTATCTAG 57.096 34.615 0.00 0.00 0.00 2.43
2963 3047 7.850935 ATGGATAAAAAGGGACGTATCTAGA 57.149 36.000 0.00 0.00 0.00 2.43
2964 3048 7.664552 TGGATAAAAAGGGACGTATCTAGAA 57.335 36.000 0.00 0.00 0.00 2.10
2965 3049 7.495055 TGGATAAAAAGGGACGTATCTAGAAC 58.505 38.462 0.00 0.00 0.00 3.01
2966 3050 7.343833 TGGATAAAAAGGGACGTATCTAGAACT 59.656 37.037 0.00 0.00 0.00 3.01
2967 3051 8.854117 GGATAAAAAGGGACGTATCTAGAACTA 58.146 37.037 0.00 0.00 0.00 2.24
2971 3055 9.955102 AAAAAGGGACGTATCTAGAACTAAAAT 57.045 29.630 0.00 0.00 0.00 1.82
2974 3058 7.869800 AGGGACGTATCTAGAACTAAAATACG 58.130 38.462 21.30 21.30 46.40 3.06
2990 3074 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
2997 3081 8.113173 ACGTCTAGATACATCTCCTTTTATCC 57.887 38.462 0.00 0.00 38.32 2.59
2998 3082 7.724506 ACGTCTAGATACATCTCCTTTTATCCA 59.275 37.037 0.00 0.00 38.32 3.41
2999 3083 8.744652 CGTCTAGATACATCTCCTTTTATCCAT 58.255 37.037 0.00 0.00 38.32 3.41
3007 3091 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
3008 3092 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
3009 3093 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
3010 3094 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
3011 3095 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
3012 3096 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
3013 3097 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
3019 3103 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3020 3104 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3021 3105 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3022 3106 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3023 3107 4.545208 TGATGACAAGTATTTCCGGACA 57.455 40.909 1.83 0.00 0.00 4.02
3024 3108 4.503910 TGATGACAAGTATTTCCGGACAG 58.496 43.478 1.83 0.00 0.00 3.51
3025 3109 4.221924 TGATGACAAGTATTTCCGGACAGA 59.778 41.667 1.83 0.00 0.00 3.41
3026 3110 4.188247 TGACAAGTATTTCCGGACAGAG 57.812 45.455 1.83 0.00 0.00 3.35
3027 3111 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
3028 3112 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
3029 3113 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
3030 3114 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
3031 3115 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
3032 3116 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
3033 3117 2.544844 TTTCCGGACAGAGGGAGTAT 57.455 50.000 1.83 0.00 33.01 2.12
3034 3118 1.776662 TTCCGGACAGAGGGAGTATG 58.223 55.000 1.83 0.00 33.01 2.39
3035 3119 0.629596 TCCGGACAGAGGGAGTATGT 59.370 55.000 0.00 0.00 31.51 2.29
3042 3126 4.828387 GGACAGAGGGAGTATGTACTAAGG 59.172 50.000 0.00 0.00 36.50 2.69
3046 3130 7.593653 ACAGAGGGAGTATGTACTAAGGTATT 58.406 38.462 0.00 0.00 36.50 1.89
3068 3152 3.093814 TGATCACGAGGTACCTTTGCTA 58.906 45.455 17.53 4.33 0.00 3.49
3069 3153 3.704566 TGATCACGAGGTACCTTTGCTAT 59.295 43.478 17.53 8.86 0.00 2.97
3070 3154 4.161565 TGATCACGAGGTACCTTTGCTATT 59.838 41.667 17.53 0.00 0.00 1.73
3071 3155 3.857052 TCACGAGGTACCTTTGCTATTG 58.143 45.455 17.53 6.50 0.00 1.90
3072 3156 3.259876 TCACGAGGTACCTTTGCTATTGT 59.740 43.478 17.53 0.00 0.00 2.71
3073 3157 3.370978 CACGAGGTACCTTTGCTATTGTG 59.629 47.826 17.53 8.39 0.00 3.33
3074 3158 2.351726 CGAGGTACCTTTGCTATTGTGC 59.648 50.000 17.53 0.00 0.00 4.57
3075 3159 2.683362 GAGGTACCTTTGCTATTGTGCC 59.317 50.000 17.53 0.00 34.16 5.01
3076 3160 2.041081 AGGTACCTTTGCTATTGTGCCA 59.959 45.455 9.21 0.00 36.13 4.92
3077 3161 2.823154 GGTACCTTTGCTATTGTGCCAA 59.177 45.455 4.06 0.00 34.14 4.52
3078 3162 3.119495 GGTACCTTTGCTATTGTGCCAAG 60.119 47.826 4.06 0.00 36.04 3.61
3079 3163 2.660189 CCTTTGCTATTGTGCCAAGG 57.340 50.000 5.23 5.23 45.23 3.61
3095 3179 3.369892 GCCAAGGAGAGCAATCTTCAGTA 60.370 47.826 0.00 0.00 0.00 2.74
3099 3183 3.118445 AGGAGAGCAATCTTCAGTAAGCC 60.118 47.826 0.00 0.00 32.36 4.35
3105 3189 3.758554 GCAATCTTCAGTAAGCCTTCCAA 59.241 43.478 0.00 0.00 32.36 3.53
3135 3219 3.957497 TGGAGTTGTAGTTTGGCAATTGT 59.043 39.130 7.40 0.00 0.00 2.71
3181 3265 7.668052 TGTAGTTCATTAAAATTGGTGTAGCCT 59.332 33.333 0.00 0.00 38.35 4.58
3200 3284 3.624861 GCCTTGGTTCTCATAGACACATG 59.375 47.826 0.00 0.00 0.00 3.21
3202 3286 5.491070 CCTTGGTTCTCATAGACACATGAA 58.509 41.667 0.00 0.00 34.59 2.57
3203 3287 6.118170 CCTTGGTTCTCATAGACACATGAAT 58.882 40.000 0.00 0.00 34.59 2.57
3259 3343 5.653330 TGCTTCTATTGCATTTTCTGATGGA 59.347 36.000 0.00 0.00 35.31 3.41
3260 3344 6.183360 TGCTTCTATTGCATTTTCTGATGGAG 60.183 38.462 0.00 0.00 35.31 3.86
3261 3345 6.704289 TTCTATTGCATTTTCTGATGGAGG 57.296 37.500 0.00 0.00 0.00 4.30
3263 3347 2.148446 TGCATTTTCTGATGGAGGGG 57.852 50.000 0.00 0.00 0.00 4.79
3264 3348 1.342275 TGCATTTTCTGATGGAGGGGG 60.342 52.381 0.00 0.00 0.00 5.40
3265 3349 1.342374 GCATTTTCTGATGGAGGGGGT 60.342 52.381 0.00 0.00 0.00 4.95
3266 3350 2.091885 GCATTTTCTGATGGAGGGGGTA 60.092 50.000 0.00 0.00 0.00 3.69
3271 3391 3.943269 TCTGATGGAGGGGGTATATGT 57.057 47.619 0.00 0.00 0.00 2.29
3297 3417 5.930837 ATCCTCTGTTGGTTGTTGAAAAA 57.069 34.783 0.00 0.00 0.00 1.94
3335 3455 8.871686 AATTTGTATGTTTTCCTGTTTCTGAC 57.128 30.769 0.00 0.00 0.00 3.51
3445 3660 4.081406 TCTTGGTGATCTTGGTTTCATGG 58.919 43.478 0.00 0.00 0.00 3.66
3615 3830 2.484651 CGACGTCTCCAGTATATCCAGG 59.515 54.545 14.70 0.00 0.00 4.45
3645 3860 0.444260 GGAAGCAAGCACGCTACTTC 59.556 55.000 19.21 19.21 42.89 3.01
3668 3883 3.876320 GGTCATTTTGAGCTCTGATCCTC 59.124 47.826 16.19 1.20 41.34 3.71
3716 3940 1.413767 CTGCGCTCGTGTACATCACC 61.414 60.000 9.73 0.00 43.51 4.02
3723 3947 3.182182 CTCGTGTACATCACCACATCAG 58.818 50.000 0.00 0.00 43.51 2.90
3753 3978 4.338379 AAACAGTTTCTTCTCTACGGCT 57.662 40.909 0.00 0.00 0.00 5.52
3764 3989 5.416639 TCTTCTCTACGGCTGTTTGTATGTA 59.583 40.000 1.99 0.00 0.00 2.29
3765 3990 5.244785 TCTCTACGGCTGTTTGTATGTAG 57.755 43.478 1.99 0.00 0.00 2.74
3771 3996 2.163613 GGCTGTTTGTATGTAGGCAACC 59.836 50.000 0.00 0.00 35.95 3.77
3784 4009 1.378119 GCAACCGGGAAGTTAGGGG 60.378 63.158 6.32 0.00 0.00 4.79
3798 4023 0.039180 TAGGGGTTCTGTCGCTCTCA 59.961 55.000 0.00 0.00 0.00 3.27
3802 4027 0.389166 GGTTCTGTCGCTCTCACCTG 60.389 60.000 0.00 0.00 0.00 4.00
3812 4037 0.743688 CTCTCACCTGTATCGCTGCT 59.256 55.000 0.00 0.00 0.00 4.24
3832 4057 3.052036 CTGAAACATTGGTTTGGCGAAG 58.948 45.455 0.00 0.00 46.84 3.79
3837 4062 2.556622 ACATTGGTTTGGCGAAGTTAGG 59.443 45.455 0.00 0.00 0.00 2.69
3846 4071 0.109226 GCGAAGTTAGGAGCTGTCGT 60.109 55.000 0.00 0.00 0.00 4.34
3847 4072 1.618861 CGAAGTTAGGAGCTGTCGTG 58.381 55.000 0.00 0.00 0.00 4.35
3852 4077 2.364324 AGTTAGGAGCTGTCGTGTTTCA 59.636 45.455 0.00 0.00 0.00 2.69
3866 4091 6.037720 TGTCGTGTTTCAGTTCATACATTGTT 59.962 34.615 0.00 0.00 0.00 2.83
3881 4106 8.791675 TCATACATTGTTCTTGTTCATTGCTTA 58.208 29.630 0.00 0.00 0.00 3.09
3919 4145 4.580167 GCCTTCATGCAAGAATGTGGTATA 59.420 41.667 4.61 0.00 33.29 1.47
3930 4156 7.412853 CAAGAATGTGGTATATTCTCTTGTGC 58.587 38.462 0.00 0.00 42.43 4.57
4013 4239 1.609208 ACCAATCATATCTTGGGCGC 58.391 50.000 15.00 0.00 46.12 6.53
4016 4242 0.606401 AATCATATCTTGGGCGCGGG 60.606 55.000 8.83 0.00 0.00 6.13
4019 4245 0.606401 CATATCTTGGGCGCGGGAAT 60.606 55.000 8.83 0.00 0.00 3.01
4162 4388 1.863267 TGAAAGCCGTTGCAAATTGG 58.137 45.000 0.00 4.86 41.13 3.16
4180 4406 3.530265 TGGATCCTGAATTGCATTTGC 57.470 42.857 14.23 0.00 42.50 3.68
4205 4431 2.416836 CCAATGCCAAAGTGCTGATCAG 60.417 50.000 18.84 18.84 0.00 2.90
4233 4459 4.049186 GTCGTCGCCTGTAAATCATGTAT 58.951 43.478 0.00 0.00 0.00 2.29
4234 4460 5.217393 GTCGTCGCCTGTAAATCATGTATA 58.783 41.667 0.00 0.00 0.00 1.47
4236 4462 5.009310 TCGTCGCCTGTAAATCATGTATACT 59.991 40.000 4.17 0.00 0.00 2.12
4252 4502 9.656323 TCATGTATACTCCCTAAACTAGTGATT 57.344 33.333 4.17 0.00 0.00 2.57
4292 4544 3.119319 TGAACAGGAATATAGCCCACCA 58.881 45.455 0.00 0.00 0.00 4.17
4294 4546 1.774856 ACAGGAATATAGCCCACCACC 59.225 52.381 0.00 0.00 0.00 4.61
4296 4548 3.248024 CAGGAATATAGCCCACCACCTA 58.752 50.000 0.00 0.00 0.00 3.08
4312 4564 7.716123 CCCACCACCTATAATTGTAAATCGTAA 59.284 37.037 0.00 0.00 0.00 3.18
4363 4615 2.427095 GGCCATTTTCAGCCGTTATCTT 59.573 45.455 0.00 0.00 39.87 2.40
4367 4619 5.679638 GCCATTTTCAGCCGTTATCTTTCAT 60.680 40.000 0.00 0.00 0.00 2.57
4372 4624 5.545658 TCAGCCGTTATCTTTCATTCAAC 57.454 39.130 0.00 0.00 0.00 3.18
4393 4645 5.897377 ACCATCTTTGTTGTAGCATTACC 57.103 39.130 0.00 0.00 0.00 2.85
4403 4655 3.119319 TGTAGCATTACCCTTCCATCCA 58.881 45.455 0.00 0.00 0.00 3.41
4410 4662 0.541863 ACCCTTCCATCCATGTCGTC 59.458 55.000 0.00 0.00 0.00 4.20
4411 4663 0.530650 CCCTTCCATCCATGTCGTCG 60.531 60.000 0.00 0.00 0.00 5.12
4412 4664 0.530650 CCTTCCATCCATGTCGTCGG 60.531 60.000 0.00 0.00 0.00 4.79
4413 4665 0.175760 CTTCCATCCATGTCGTCGGT 59.824 55.000 0.00 0.00 0.00 4.69
4414 4666 0.108377 TTCCATCCATGTCGTCGGTG 60.108 55.000 0.00 0.00 0.00 4.94
4415 4667 2.173669 CCATCCATGTCGTCGGTGC 61.174 63.158 0.00 0.00 0.00 5.01
4438 4690 2.661979 GCGCTGTGTGCTTGTAAACTAC 60.662 50.000 0.00 0.00 40.11 2.73
4439 4691 2.800544 CGCTGTGTGCTTGTAAACTACT 59.199 45.455 0.00 0.00 40.11 2.57
4440 4692 3.120991 CGCTGTGTGCTTGTAAACTACTC 60.121 47.826 0.00 0.00 40.11 2.59
4441 4693 3.186613 GCTGTGTGCTTGTAAACTACTCC 59.813 47.826 0.00 0.00 38.95 3.85
4442 4694 3.735591 TGTGTGCTTGTAAACTACTCCC 58.264 45.455 0.00 0.00 0.00 4.30
4443 4695 3.389983 TGTGTGCTTGTAAACTACTCCCT 59.610 43.478 0.00 0.00 0.00 4.20
4444 4696 3.995048 GTGTGCTTGTAAACTACTCCCTC 59.005 47.826 0.00 0.00 0.00 4.30
4445 4697 3.007614 TGTGCTTGTAAACTACTCCCTCC 59.992 47.826 0.00 0.00 0.00 4.30
4446 4698 2.232941 TGCTTGTAAACTACTCCCTCCG 59.767 50.000 0.00 0.00 0.00 4.63
4447 4699 2.233186 GCTTGTAAACTACTCCCTCCGT 59.767 50.000 0.00 0.00 0.00 4.69
4448 4700 3.306571 GCTTGTAAACTACTCCCTCCGTT 60.307 47.826 0.00 0.00 0.00 4.44
4449 4701 4.492611 CTTGTAAACTACTCCCTCCGTTC 58.507 47.826 0.00 0.00 0.00 3.95
4450 4702 2.489329 TGTAAACTACTCCCTCCGTTCG 59.511 50.000 0.00 0.00 0.00 3.95
4451 4703 0.893447 AAACTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
4452 4704 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
4453 4705 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
4454 4706 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
4455 4707 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4456 4708 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4457 4709 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4458 4710 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4459 4711 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4460 4712 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4461 4713 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4462 4714 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4463 4715 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4464 4716 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4465 4717 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
4466 4718 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
4467 4719 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
4468 4720 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
4469 4721 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
4470 4722 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
4471 4723 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
4472 4724 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
4473 4725 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
4474 4726 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
4475 4727 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
4476 4728 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
4477 4729 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
4478 4730 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
4479 4731 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
4480 4732 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
4481 4733 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
4482 4734 5.353111 TGTCGCGAAAATGGATGTATCTAA 58.647 37.500 12.06 0.00 0.00 2.10
4483 4735 5.813157 TGTCGCGAAAATGGATGTATCTAAA 59.187 36.000 12.06 0.00 0.00 1.85
4484 4736 6.481976 TGTCGCGAAAATGGATGTATCTAAAT 59.518 34.615 12.06 0.00 0.00 1.40
4485 4737 7.654116 TGTCGCGAAAATGGATGTATCTAAATA 59.346 33.333 12.06 0.00 0.00 1.40
4486 4738 7.950496 GTCGCGAAAATGGATGTATCTAAATAC 59.050 37.037 12.06 0.00 38.61 1.89
4487 4739 6.948228 CGCGAAAATGGATGTATCTAAATACG 59.052 38.462 0.00 0.00 40.63 3.06
4488 4740 7.358931 CGCGAAAATGGATGTATCTAAATACGT 60.359 37.037 0.00 0.00 40.63 3.57
4489 4741 7.950496 GCGAAAATGGATGTATCTAAATACGTC 59.050 37.037 0.00 8.59 46.81 4.34
4490 4742 9.193133 CGAAAATGGATGTATCTAAATACGTCT 57.807 33.333 14.27 0.00 46.75 4.18
4507 4759 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
4508 4760 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
4509 4761 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
4510 4762 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
4511 4763 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
4512 4764 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
4513 4765 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
4514 4766 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
4515 4767 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
4516 4768 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
4517 4769 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
4518 4770 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
4519 4771 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
4520 4772 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
4521 4773 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
4522 4774 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
4523 4775 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
4524 4776 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
4525 4777 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
4526 4778 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
4527 4779 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4528 4780 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
4529 4781 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4530 4782 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4531 4783 2.564062 ACAAGTAATTCCGAACGGAGGA 59.436 45.455 15.34 3.20 46.06 3.71
4568 4820 7.011189 GCTTGCTTGCAACTAAATATTTTGTG 58.989 34.615 14.64 10.44 0.00 3.33
4569 4821 6.464895 TGCTTGCAACTAAATATTTTGTGC 57.535 33.333 14.64 17.65 0.00 4.57
4577 4829 7.273381 GCAACTAAATATTTTGTGCGAGAACAT 59.727 33.333 14.64 0.00 0.00 2.71
4586 4838 4.926860 TGTGCGAGAACATGATGTAAAG 57.073 40.909 0.00 0.00 0.00 1.85
4588 4840 3.932710 GTGCGAGAACATGATGTAAAGGA 59.067 43.478 0.00 0.00 0.00 3.36
4593 4845 5.503031 CGAGAACATGATGTAAAGGATGCAC 60.503 44.000 0.00 0.00 0.00 4.57
4605 4857 1.949525 AGGATGCACGATAACAATGGC 59.050 47.619 0.00 0.00 0.00 4.40
4646 4898 5.175491 CCACATTTGATCCAACGAAAAACAG 59.825 40.000 0.00 0.00 0.00 3.16
4676 4928 4.498009 CCTCGCAACAAGATTTCAACAAGT 60.498 41.667 0.00 0.00 0.00 3.16
4711 4963 3.816994 AGTAATGGTTATCCTTTCGGCC 58.183 45.455 0.00 0.00 33.88 6.13
4713 4965 2.348411 ATGGTTATCCTTTCGGCCAG 57.652 50.000 2.24 0.00 34.23 4.85
4717 4969 1.664151 GTTATCCTTTCGGCCAGAACG 59.336 52.381 2.24 5.23 38.83 3.95
4730 4982 2.609491 GCCAGAACGCATCGGATACATA 60.609 50.000 0.00 0.00 0.00 2.29
4733 4985 4.546570 CAGAACGCATCGGATACATAAGA 58.453 43.478 0.00 0.00 0.00 2.10
4736 4988 6.806739 CAGAACGCATCGGATACATAAGATTA 59.193 38.462 0.00 0.00 0.00 1.75
4740 4992 5.750547 CGCATCGGATACATAAGATTAGCAT 59.249 40.000 0.00 0.00 0.00 3.79
4764 5016 6.524101 AATACAAAGGAATGCGTTGGTAAT 57.476 33.333 5.43 0.00 33.42 1.89
4777 5029 5.065474 TGCGTTGGTAATCCTAGCAAAATAC 59.935 40.000 0.00 0.00 44.78 1.89
4779 5031 5.292589 CGTTGGTAATCCTAGCAAAATACGT 59.707 40.000 0.00 0.00 44.78 3.57
4784 5036 6.256321 GGTAATCCTAGCAAAATACGTTCGAA 59.744 38.462 0.00 0.00 0.00 3.71
4884 5137 9.411189 ACACTTAAACCCAACAGACTAATTTTA 57.589 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.389296 TCGTACTGTGATGGCCAACG 60.389 55.000 10.96 14.13 0.00 4.10
1 2 1.076332 GTCGTACTGTGATGGCCAAC 58.924 55.000 10.96 8.17 0.00 3.77
2 3 0.682292 TGTCGTACTGTGATGGCCAA 59.318 50.000 10.96 0.00 0.00 4.52
3 4 0.037697 GTGTCGTACTGTGATGGCCA 60.038 55.000 8.56 8.56 0.00 5.36
4 5 0.739813 GGTGTCGTACTGTGATGGCC 60.740 60.000 0.00 0.00 0.00 5.36
5 6 0.037697 TGGTGTCGTACTGTGATGGC 60.038 55.000 0.00 0.00 0.00 4.40
6 7 2.066262 GTTGGTGTCGTACTGTGATGG 58.934 52.381 0.00 0.00 0.00 3.51
7 8 2.749776 TGTTGGTGTCGTACTGTGATG 58.250 47.619 0.00 0.00 0.00 3.07
8 9 3.128349 GTTGTTGGTGTCGTACTGTGAT 58.872 45.455 0.00 0.00 0.00 3.06
9 10 2.166870 AGTTGTTGGTGTCGTACTGTGA 59.833 45.455 0.00 0.00 0.00 3.58
10 11 2.546778 AGTTGTTGGTGTCGTACTGTG 58.453 47.619 0.00 0.00 0.00 3.66
18 19 3.568007 TGCTGGATTTAGTTGTTGGTGTC 59.432 43.478 0.00 0.00 0.00 3.67
51 52 9.377312 CCGGGATTAACATTTTTGTTATTTGAT 57.623 29.630 0.00 0.00 34.66 2.57
52 53 8.368668 ACCGGGATTAACATTTTTGTTATTTGA 58.631 29.630 6.32 0.00 34.66 2.69
53 54 8.541133 ACCGGGATTAACATTTTTGTTATTTG 57.459 30.769 6.32 0.00 34.66 2.32
54 55 7.542824 CGACCGGGATTAACATTTTTGTTATTT 59.457 33.333 6.32 0.00 34.66 1.40
55 56 7.030768 CGACCGGGATTAACATTTTTGTTATT 58.969 34.615 6.32 0.00 34.66 1.40
66 67 1.342174 GCCTATCGACCGGGATTAACA 59.658 52.381 6.32 0.00 0.00 2.41
84 85 0.313672 TCGTTTGGTTGCATCTTGCC 59.686 50.000 0.00 0.00 44.23 4.52
102 103 4.806330 TCTCACTATTCACAACCGTTCTC 58.194 43.478 0.00 0.00 0.00 2.87
188 189 1.354040 CGTGCTGCTAGGTCTTCTTG 58.646 55.000 0.00 0.00 0.00 3.02
491 492 2.126424 GCGCTCCTCGTCGTCTTT 60.126 61.111 0.00 0.00 41.07 2.52
922 965 1.345741 TCTGAAAGCCTGTCCACAGAG 59.654 52.381 8.36 0.13 46.59 3.35
1023 1072 2.191513 CGGCGAGGACGATAAGGGA 61.192 63.158 0.00 0.00 42.66 4.20
1025 1074 3.428797 TCGGCGAGGACGATAAGG 58.571 61.111 4.99 0.00 38.55 2.69
1073 1122 2.592308 GGTAGCAGCAGAAGGGGG 59.408 66.667 0.00 0.00 0.00 5.40
1375 1432 3.061928 CGATAAAAATGCGCATGGAAACG 60.062 43.478 26.09 20.09 0.00 3.60
1383 1440 3.183574 CGGTCTATCGATAAAAATGCGCA 59.816 43.478 14.96 14.96 0.00 6.09
1444 1501 6.038356 GTCTTGGAATTGACCATTTGCATAG 58.962 40.000 0.00 2.81 39.82 2.23
1455 1512 2.807676 ACCATGGGTCTTGGAATTGAC 58.192 47.619 18.09 0.00 37.69 3.18
1485 1542 9.496873 TCACTTTAAAAACATAGCAGCTACTTA 57.503 29.630 3.59 0.00 0.00 2.24
1486 1543 8.391075 TCACTTTAAAAACATAGCAGCTACTT 57.609 30.769 3.59 0.00 0.00 2.24
1487 1544 7.979444 TCACTTTAAAAACATAGCAGCTACT 57.021 32.000 3.59 0.00 0.00 2.57
1488 1545 9.626045 AATTCACTTTAAAAACATAGCAGCTAC 57.374 29.630 3.59 0.00 0.00 3.58
1568 1625 4.989168 ACTGAATAAAACACGACCAGACTC 59.011 41.667 0.00 0.00 0.00 3.36
1621 1678 8.681486 TTTCTGATAAAGTATGCATGCTATGT 57.319 30.769 18.16 8.96 0.00 2.29
1666 1723 4.398988 CGGGACAATCCAAAGATTCAATGA 59.601 41.667 0.00 0.00 40.89 2.57
1692 1750 5.243730 CCTTATCTTGGTGCTCAAAGGAAAA 59.756 40.000 3.14 0.00 33.54 2.29
1708 1766 2.674796 GTCGCACAGACCCTTATCTT 57.325 50.000 0.00 0.00 43.95 2.40
1748 1806 4.245660 CTCGCAGAAACCATAAACTCAGA 58.754 43.478 0.00 0.00 34.09 3.27
1757 1815 2.026822 AGATTGTCCTCGCAGAAACCAT 60.027 45.455 0.00 0.00 34.09 3.55
1758 1816 1.347707 AGATTGTCCTCGCAGAAACCA 59.652 47.619 0.00 0.00 34.09 3.67
1762 1820 1.002430 AGCAAGATTGTCCTCGCAGAA 59.998 47.619 0.00 0.00 34.09 3.02
1763 1821 0.610174 AGCAAGATTGTCCTCGCAGA 59.390 50.000 0.00 0.00 0.00 4.26
1764 1822 1.129998 CAAGCAAGATTGTCCTCGCAG 59.870 52.381 0.00 0.00 0.00 5.18
1766 1824 1.442769 TCAAGCAAGATTGTCCTCGC 58.557 50.000 0.00 0.00 0.00 5.03
1767 1825 4.488126 TTTTCAAGCAAGATTGTCCTCG 57.512 40.909 0.00 0.00 0.00 4.63
1800 1858 4.540099 ACTTCCTATTGGTTCCTGAATGGA 59.460 41.667 0.00 0.00 44.51 3.41
1804 1862 8.802267 CAAATTAACTTCCTATTGGTTCCTGAA 58.198 33.333 0.00 0.00 34.23 3.02
1852 1911 4.708177 AGATTCTGGTATTTGCGCTACAT 58.292 39.130 9.73 0.00 0.00 2.29
1876 1935 6.670077 TGCGTAATTGCTCATTTACATGTA 57.330 33.333 0.08 0.08 35.36 2.29
1879 1938 7.702386 TGTAATGCGTAATTGCTCATTTACAT 58.298 30.769 15.40 0.00 32.49 2.29
1894 1953 8.426881 ACAACACACATAATATGTAATGCGTA 57.573 30.769 5.49 0.00 42.70 4.42
1896 1955 9.528847 GATACAACACACATAATATGTAATGCG 57.471 33.333 5.49 5.70 42.70 4.73
1901 1960 9.606631 TGCTTGATACAACACACATAATATGTA 57.393 29.630 5.49 0.00 42.70 2.29
1903 1962 8.397148 TGTGCTTGATACAACACACATAATATG 58.603 33.333 0.00 0.00 38.07 1.78
1926 1985 4.094739 TCAATGCACCAATAGTCGAATGTG 59.905 41.667 0.00 0.00 0.00 3.21
1942 2001 2.076100 GTCGATCTGGTGTTCAATGCA 58.924 47.619 0.00 0.00 0.00 3.96
1946 2005 2.038426 ACCATGTCGATCTGGTGTTCAA 59.962 45.455 18.03 0.00 44.06 2.69
1972 2031 5.048782 TGAACATATATCCTTGGAAATGCGC 60.049 40.000 0.00 0.00 0.00 6.09
1974 2033 7.945134 AGTTGAACATATATCCTTGGAAATGC 58.055 34.615 0.00 0.00 0.00 3.56
1981 2040 8.400947 CAGGTTGAAGTTGAACATATATCCTTG 58.599 37.037 7.52 0.00 0.00 3.61
1982 2041 8.328758 TCAGGTTGAAGTTGAACATATATCCTT 58.671 33.333 7.52 0.00 0.00 3.36
2020 2079 8.855804 TTGAATACTTCCTTCCTACCTCTATT 57.144 34.615 0.00 0.00 0.00 1.73
2022 2081 7.649715 TCTTGAATACTTCCTTCCTACCTCTA 58.350 38.462 0.00 0.00 0.00 2.43
2026 2085 6.793505 TCTCTTGAATACTTCCTTCCTACC 57.206 41.667 0.00 0.00 0.00 3.18
2078 2138 5.630415 TTTGGGACAGAGGGAGTATATTG 57.370 43.478 0.00 0.00 42.39 1.90
2085 2145 4.576330 ACTTATTTTGGGACAGAGGGAG 57.424 45.455 0.00 0.00 42.39 4.30
2086 2146 5.098663 AGTACTTATTTTGGGACAGAGGGA 58.901 41.667 0.00 0.00 42.39 4.20
2087 2147 5.437191 AGTACTTATTTTGGGACAGAGGG 57.563 43.478 0.00 0.00 42.39 4.30
2088 2148 8.101419 ACTTTAGTACTTATTTTGGGACAGAGG 58.899 37.037 0.00 0.00 42.39 3.69
2089 2149 9.503399 AACTTTAGTACTTATTTTGGGACAGAG 57.497 33.333 0.00 0.00 42.39 3.35
2107 2167 9.856162 TCCCAAAATAAGTGTCTTAACTTTAGT 57.144 29.630 0.00 0.00 40.77 2.24
2109 2169 8.776470 CGTCCCAAAATAAGTGTCTTAACTTTA 58.224 33.333 0.00 0.00 40.77 1.85
2110 2170 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2111 2171 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
2112 2172 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
2113 2173 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
2114 2174 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2115 2175 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2116 2176 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2117 2177 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2118 2178 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2119 2179 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2120 2180 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2121 2181 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2122 2182 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2123 2183 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2124 2184 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2125 2185 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2126 2186 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2127 2187 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2128 2188 1.835531 GAAATACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
2129 2189 1.273381 TGAAATACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
2130 2190 1.492764 TGAAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
2131 2191 4.950205 TTATGAAATACTCCCTCCGTCC 57.050 45.455 0.00 0.00 0.00 4.79
2132 2192 4.750598 GCTTTATGAAATACTCCCTCCGTC 59.249 45.833 0.00 0.00 0.00 4.79
2133 2193 4.163458 TGCTTTATGAAATACTCCCTCCGT 59.837 41.667 0.00 0.00 0.00 4.69
2134 2194 4.703897 TGCTTTATGAAATACTCCCTCCG 58.296 43.478 0.00 0.00 0.00 4.63
2135 2195 5.760743 GTCTGCTTTATGAAATACTCCCTCC 59.239 44.000 0.00 0.00 0.00 4.30
2136 2196 6.481644 CAGTCTGCTTTATGAAATACTCCCTC 59.518 42.308 0.00 0.00 0.00 4.30
2137 2197 6.156949 TCAGTCTGCTTTATGAAATACTCCCT 59.843 38.462 0.00 0.00 0.00 4.20
2138 2198 6.349300 TCAGTCTGCTTTATGAAATACTCCC 58.651 40.000 0.00 0.00 0.00 4.30
2139 2199 8.983724 GTATCAGTCTGCTTTATGAAATACTCC 58.016 37.037 0.00 0.00 0.00 3.85
2140 2200 9.534565 TGTATCAGTCTGCTTTATGAAATACTC 57.465 33.333 0.00 0.00 0.00 2.59
2141 2201 9.890629 TTGTATCAGTCTGCTTTATGAAATACT 57.109 29.630 0.00 0.00 0.00 2.12
2171 2231 7.039223 AGCAAAGAGAAATTGATTCAGAACCAT 60.039 33.333 0.00 0.00 40.72 3.55
2179 2239 8.299570 TCCAAGTAAGCAAAGAGAAATTGATTC 58.700 33.333 0.00 0.00 37.54 2.52
2180 2240 8.084684 GTCCAAGTAAGCAAAGAGAAATTGATT 58.915 33.333 0.00 0.00 39.48 2.57
2235 2318 1.755380 AGCATCCCGTTGAGGTACTAC 59.245 52.381 0.00 0.00 41.55 2.73
2247 2330 3.600388 AGAACAAGAAGTTAGCATCCCG 58.400 45.455 0.00 0.00 41.51 5.14
2272 2355 5.422214 TTTGAAAACCTGCCAAAACCTAA 57.578 34.783 0.00 0.00 0.00 2.69
2405 2488 3.867857 TGCCACTTGATAATGCGTTCTA 58.132 40.909 0.00 0.00 0.00 2.10
2426 2510 9.425248 ACAATACAAACATCCTATGGATTCAAT 57.575 29.630 0.00 0.00 39.79 2.57
2433 2517 6.919662 GCATCAACAATACAAACATCCTATGG 59.080 38.462 0.00 0.00 33.60 2.74
2483 2567 3.547649 ACTTCGTTTAATTTGGGACGC 57.452 42.857 0.00 0.00 35.63 5.19
2498 2582 4.604843 TTCAATATGCAGCAGAACTTCG 57.395 40.909 0.00 0.00 0.00 3.79
2527 2611 2.093869 GCATCACAACCTGCATCCAAAT 60.094 45.455 0.00 0.00 38.28 2.32
2553 2637 2.127271 ATGCAACATCGGATTCCACA 57.873 45.000 3.09 0.00 0.00 4.17
2579 2663 5.649395 TCCAATGAAAGATTGAGCTTACCAG 59.351 40.000 0.00 0.00 0.00 4.00
2737 2821 2.380064 TGGATTGGCCTCTGTTTTGT 57.620 45.000 3.32 0.00 37.63 2.83
2895 2979 5.183522 GGACGGAGGGAGTACATCTTATTAG 59.816 48.000 0.00 0.00 0.00 1.73
2906 2990 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2907 2991 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2908 2992 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2909 2993 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2910 2994 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2911 2995 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2912 2996 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2913 2997 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2914 2998 3.000078 CGATGACAAGTATTTTCGGACGG 60.000 47.826 0.00 0.00 0.00 4.79
2915 2999 3.855379 TCGATGACAAGTATTTTCGGACG 59.145 43.478 0.00 0.00 0.00 4.79
2916 3000 5.773239 TTCGATGACAAGTATTTTCGGAC 57.227 39.130 0.00 0.00 0.00 4.79
2917 3001 6.183360 CCATTTCGATGACAAGTATTTTCGGA 60.183 38.462 0.00 0.00 0.00 4.55
2918 3002 5.965334 CCATTTCGATGACAAGTATTTTCGG 59.035 40.000 0.00 0.00 0.00 4.30
2919 3003 6.771076 TCCATTTCGATGACAAGTATTTTCG 58.229 36.000 0.00 0.00 0.00 3.46
2925 3009 8.673711 CCTTTTTATCCATTTCGATGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2926 3010 7.362920 CCCTTTTTATCCATTTCGATGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
2927 3011 6.974622 CCCTTTTTATCCATTTCGATGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
2928 3012 6.661377 TCCCTTTTTATCCATTTCGATGACAA 59.339 34.615 0.00 0.00 0.00 3.18
2929 3013 6.094881 GTCCCTTTTTATCCATTTCGATGACA 59.905 38.462 0.00 0.00 0.00 3.58
2930 3014 6.495706 GTCCCTTTTTATCCATTTCGATGAC 58.504 40.000 0.00 0.00 0.00 3.06
2931 3015 5.295787 CGTCCCTTTTTATCCATTTCGATGA 59.704 40.000 0.00 0.00 0.00 2.92
2932 3016 5.065988 ACGTCCCTTTTTATCCATTTCGATG 59.934 40.000 0.00 0.00 0.00 3.84
2933 3017 5.190677 ACGTCCCTTTTTATCCATTTCGAT 58.809 37.500 0.00 0.00 0.00 3.59
2934 3018 4.581868 ACGTCCCTTTTTATCCATTTCGA 58.418 39.130 0.00 0.00 0.00 3.71
2935 3019 4.957759 ACGTCCCTTTTTATCCATTTCG 57.042 40.909 0.00 0.00 0.00 3.46
2936 3020 7.803279 AGATACGTCCCTTTTTATCCATTTC 57.197 36.000 0.00 0.00 0.00 2.17
2937 3021 8.711170 TCTAGATACGTCCCTTTTTATCCATTT 58.289 33.333 0.00 0.00 0.00 2.32
2938 3022 8.258850 TCTAGATACGTCCCTTTTTATCCATT 57.741 34.615 0.00 0.00 0.00 3.16
2939 3023 7.850935 TCTAGATACGTCCCTTTTTATCCAT 57.149 36.000 0.00 0.00 0.00 3.41
2940 3024 7.343833 AGTTCTAGATACGTCCCTTTTTATCCA 59.656 37.037 0.00 0.00 0.00 3.41
2941 3025 7.724287 AGTTCTAGATACGTCCCTTTTTATCC 58.276 38.462 0.00 0.00 0.00 2.59
2945 3029 9.955102 ATTTTAGTTCTAGATACGTCCCTTTTT 57.045 29.630 0.00 0.00 0.00 1.94
2948 3032 8.348507 CGTATTTTAGTTCTAGATACGTCCCTT 58.651 37.037 18.48 0.00 40.12 3.95
2949 3033 7.869800 CGTATTTTAGTTCTAGATACGTCCCT 58.130 38.462 18.48 0.00 40.12 4.20
2964 3048 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
2971 3055 9.228949 GGATAAAAGGAGATGTATCTAGACGTA 57.771 37.037 0.00 0.00 37.25 3.57
2972 3056 7.724506 TGGATAAAAGGAGATGTATCTAGACGT 59.275 37.037 0.00 0.00 37.25 4.34
2973 3057 8.112016 TGGATAAAAGGAGATGTATCTAGACG 57.888 38.462 0.00 0.00 37.25 4.18
2981 3065 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
2982 3066 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
2983 3067 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
2984 3068 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
2985 3069 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
2986 3070 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
2987 3071 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
2993 3077 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
2994 3078 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2995 3079 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2996 3080 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2997 3081 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2998 3082 6.432783 TGTCCGGAAATACTTGTCATCAAAAT 59.567 34.615 5.23 0.00 32.87 1.82
2999 3083 5.765677 TGTCCGGAAATACTTGTCATCAAAA 59.234 36.000 5.23 0.00 32.87 2.44
3000 3084 5.309638 TGTCCGGAAATACTTGTCATCAAA 58.690 37.500 5.23 0.00 32.87 2.69
3001 3085 4.900684 TGTCCGGAAATACTTGTCATCAA 58.099 39.130 5.23 0.00 0.00 2.57
3002 3086 4.221924 TCTGTCCGGAAATACTTGTCATCA 59.778 41.667 5.23 0.00 0.00 3.07
3003 3087 4.755411 TCTGTCCGGAAATACTTGTCATC 58.245 43.478 5.23 0.00 0.00 2.92
3004 3088 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
3005 3089 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
3006 3090 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
3007 3091 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
3008 3092 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
3009 3093 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
3010 3094 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
3011 3095 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
3012 3096 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
3013 3097 2.544844 TACTCCCTCTGTCCGGAAAT 57.455 50.000 5.23 0.00 0.00 2.17
3014 3098 2.108168 CATACTCCCTCTGTCCGGAAA 58.892 52.381 5.23 0.00 0.00 3.13
3015 3099 1.006758 ACATACTCCCTCTGTCCGGAA 59.993 52.381 5.23 0.00 0.00 4.30
3016 3100 0.629596 ACATACTCCCTCTGTCCGGA 59.370 55.000 0.00 0.00 0.00 5.14
3017 3101 1.955080 GTACATACTCCCTCTGTCCGG 59.045 57.143 0.00 0.00 0.00 5.14
3018 3102 2.933573 AGTACATACTCCCTCTGTCCG 58.066 52.381 0.00 0.00 0.00 4.79
3019 3103 4.828387 CCTTAGTACATACTCCCTCTGTCC 59.172 50.000 0.00 0.00 37.73 4.02
3020 3104 5.447757 ACCTTAGTACATACTCCCTCTGTC 58.552 45.833 0.00 0.00 37.73 3.51
3021 3105 5.469210 ACCTTAGTACATACTCCCTCTGT 57.531 43.478 0.00 0.00 37.73 3.41
3022 3106 8.361139 CAAATACCTTAGTACATACTCCCTCTG 58.639 40.741 0.00 0.00 37.73 3.35
3023 3107 8.287350 TCAAATACCTTAGTACATACTCCCTCT 58.713 37.037 0.00 0.00 37.73 3.69
3024 3108 8.474710 TCAAATACCTTAGTACATACTCCCTC 57.525 38.462 0.00 0.00 37.73 4.30
3025 3109 9.091220 GATCAAATACCTTAGTACATACTCCCT 57.909 37.037 0.00 0.00 37.73 4.20
3026 3110 8.867097 TGATCAAATACCTTAGTACATACTCCC 58.133 37.037 0.00 0.00 37.73 4.30
3027 3111 9.694137 GTGATCAAATACCTTAGTACATACTCC 57.306 37.037 0.00 0.00 37.73 3.85
3028 3112 9.395707 CGTGATCAAATACCTTAGTACATACTC 57.604 37.037 0.00 0.00 37.73 2.59
3029 3113 9.128404 TCGTGATCAAATACCTTAGTACATACT 57.872 33.333 0.00 0.00 40.24 2.12
3030 3114 9.395707 CTCGTGATCAAATACCTTAGTACATAC 57.604 37.037 0.00 0.00 0.00 2.39
3031 3115 8.573885 CCTCGTGATCAAATACCTTAGTACATA 58.426 37.037 0.00 0.00 0.00 2.29
3032 3116 7.069578 ACCTCGTGATCAAATACCTTAGTACAT 59.930 37.037 0.00 0.00 0.00 2.29
3033 3117 6.379133 ACCTCGTGATCAAATACCTTAGTACA 59.621 38.462 0.00 0.00 0.00 2.90
3034 3118 6.803642 ACCTCGTGATCAAATACCTTAGTAC 58.196 40.000 0.00 0.00 0.00 2.73
3035 3119 7.013655 GGTACCTCGTGATCAAATACCTTAGTA 59.986 40.741 4.06 0.00 0.00 1.82
3042 3126 5.220605 GCAAAGGTACCTCGTGATCAAATAC 60.221 44.000 23.48 5.24 0.00 1.89
3046 3130 2.301870 AGCAAAGGTACCTCGTGATCAA 59.698 45.455 23.48 0.00 0.00 2.57
3070 3154 0.694771 AGATTGCTCTCCTTGGCACA 59.305 50.000 0.00 0.00 38.23 4.57
3071 3155 1.742268 GAAGATTGCTCTCCTTGGCAC 59.258 52.381 0.00 0.00 38.23 5.01
3072 3156 1.352017 TGAAGATTGCTCTCCTTGGCA 59.648 47.619 0.00 0.00 36.62 4.92
3073 3157 2.015587 CTGAAGATTGCTCTCCTTGGC 58.984 52.381 0.00 0.00 0.00 4.52
3074 3158 3.347077 ACTGAAGATTGCTCTCCTTGG 57.653 47.619 0.00 0.00 0.00 3.61
3075 3159 4.332268 GCTTACTGAAGATTGCTCTCCTTG 59.668 45.833 0.00 0.00 34.25 3.61
3076 3160 4.512484 GCTTACTGAAGATTGCTCTCCTT 58.488 43.478 0.00 0.00 34.25 3.36
3077 3161 3.118445 GGCTTACTGAAGATTGCTCTCCT 60.118 47.826 0.00 0.00 34.25 3.69
3078 3162 3.118445 AGGCTTACTGAAGATTGCTCTCC 60.118 47.826 0.00 0.00 34.25 3.71
3079 3163 4.135747 AGGCTTACTGAAGATTGCTCTC 57.864 45.455 0.00 0.00 34.25 3.20
3095 3179 2.162681 CCAGTTCGAATTGGAAGGCTT 58.837 47.619 30.16 0.00 37.97 4.35
3099 3183 3.815401 ACAACTCCAGTTCGAATTGGAAG 59.185 43.478 33.63 28.39 43.15 3.46
3105 3189 4.755123 CCAAACTACAACTCCAGTTCGAAT 59.245 41.667 0.00 0.00 35.83 3.34
3135 3219 3.118038 ACAGACTGTTGGGAGTTTTAGCA 60.118 43.478 1.07 0.00 0.00 3.49
3142 3226 3.305720 TGAACTACAGACTGTTGGGAGT 58.694 45.455 14.50 8.17 0.00 3.85
3181 3265 9.685276 AAATATTCATGTGTCTATGAGAACCAA 57.315 29.630 0.00 0.00 38.25 3.67
3244 3328 1.342275 CCCCCTCCATCAGAAAATGCA 60.342 52.381 0.00 0.00 0.00 3.96
3251 3335 3.943269 ACATATACCCCCTCCATCAGA 57.057 47.619 0.00 0.00 0.00 3.27
3252 3336 6.448369 TTTTACATATACCCCCTCCATCAG 57.552 41.667 0.00 0.00 0.00 2.90
3255 3339 6.105411 AGGATTTTACATATACCCCCTCCAT 58.895 40.000 0.00 0.00 0.00 3.41
3256 3340 5.491992 AGGATTTTACATATACCCCCTCCA 58.508 41.667 0.00 0.00 0.00 3.86
3257 3341 5.791141 AGAGGATTTTACATATACCCCCTCC 59.209 44.000 0.00 0.00 38.65 4.30
3259 3343 6.158260 ACAGAGGATTTTACATATACCCCCT 58.842 40.000 0.00 0.00 0.00 4.79
3260 3344 6.449830 ACAGAGGATTTTACATATACCCCC 57.550 41.667 0.00 0.00 0.00 5.40
3261 3345 6.715264 CCAACAGAGGATTTTACATATACCCC 59.285 42.308 0.00 0.00 0.00 4.95
3263 3347 8.621286 CAACCAACAGAGGATTTTACATATACC 58.379 37.037 0.00 0.00 0.00 2.73
3264 3348 9.174166 ACAACCAACAGAGGATTTTACATATAC 57.826 33.333 0.00 0.00 0.00 1.47
3265 3349 9.747898 AACAACCAACAGAGGATTTTACATATA 57.252 29.630 0.00 0.00 0.00 0.86
3266 3350 8.522830 CAACAACCAACAGAGGATTTTACATAT 58.477 33.333 0.00 0.00 0.00 1.78
3271 3391 7.411486 TTTCAACAACCAACAGAGGATTTTA 57.589 32.000 0.00 0.00 0.00 1.52
3314 3434 6.545666 ACATGTCAGAAACAGGAAAACATACA 59.454 34.615 0.00 0.00 42.26 2.29
3315 3435 6.970484 ACATGTCAGAAACAGGAAAACATAC 58.030 36.000 0.00 0.00 42.26 2.39
3319 3439 6.619801 ACTACATGTCAGAAACAGGAAAAC 57.380 37.500 0.00 0.00 42.26 2.43
3356 3559 3.610911 GCCTGCTAACTACCAGTCAATT 58.389 45.455 0.00 0.00 0.00 2.32
3445 3660 2.401766 CCACGCCCATCTGCACTTC 61.402 63.158 0.00 0.00 0.00 3.01
3486 3701 0.250513 CAACCTCCCCACTAGCAGTC 59.749 60.000 0.00 0.00 0.00 3.51
3561 3776 0.758734 TCCGGCCATCTTCCATGTAG 59.241 55.000 2.24 0.00 0.00 2.74
3615 3830 5.324697 CGTGCTTGCTTCCTCTTTATAAAC 58.675 41.667 0.00 0.00 0.00 2.01
3630 3845 1.956620 GACCGAAGTAGCGTGCTTGC 61.957 60.000 0.00 0.00 0.00 4.01
3645 3860 2.611292 GGATCAGAGCTCAAAATGACCG 59.389 50.000 17.77 0.00 0.00 4.79
3706 3930 2.265367 ACCCTGATGTGGTGATGTACA 58.735 47.619 0.00 0.00 33.94 2.90
3753 3978 2.428491 CCGGTTGCCTACATACAAACA 58.572 47.619 0.00 0.00 32.93 2.83
3764 3989 1.683441 CCTAACTTCCCGGTTGCCT 59.317 57.895 0.00 0.00 0.00 4.75
3765 3990 1.378119 CCCTAACTTCCCGGTTGCC 60.378 63.158 0.00 0.00 0.00 4.52
3771 3996 0.981943 ACAGAACCCCTAACTTCCCG 59.018 55.000 0.00 0.00 0.00 5.14
3784 4009 0.315568 ACAGGTGAGAGCGACAGAAC 59.684 55.000 0.00 0.00 0.00 3.01
3798 4023 1.001974 TGTTTCAGCAGCGATACAGGT 59.998 47.619 6.48 0.00 0.00 4.00
3802 4027 2.420022 ACCAATGTTTCAGCAGCGATAC 59.580 45.455 0.00 0.00 0.00 2.24
3812 4037 2.428890 ACTTCGCCAAACCAATGTTTCA 59.571 40.909 0.00 0.00 42.73 2.69
3832 4057 2.731976 CTGAAACACGACAGCTCCTAAC 59.268 50.000 0.00 0.00 0.00 2.34
3837 4062 2.201732 TGAACTGAAACACGACAGCTC 58.798 47.619 0.00 0.00 37.61 4.09
3846 4071 7.995289 ACAAGAACAATGTATGAACTGAAACA 58.005 30.769 0.00 0.00 0.00 2.83
3847 4072 8.856490 AACAAGAACAATGTATGAACTGAAAC 57.144 30.769 0.00 0.00 0.00 2.78
3852 4077 7.596248 GCAATGAACAAGAACAATGTATGAACT 59.404 33.333 0.00 0.00 0.00 3.01
3881 4106 5.297776 GCATGAAGGCACACTCTAACATTAT 59.702 40.000 0.00 0.00 0.00 1.28
3919 4145 2.555757 GCAAAGGACAGCACAAGAGAAT 59.444 45.455 0.00 0.00 0.00 2.40
3930 4156 1.002468 CGACCACAAAGCAAAGGACAG 60.002 52.381 0.00 0.00 0.00 3.51
4013 4239 1.254026 TATCCTAGGCACGATTCCCG 58.746 55.000 2.96 0.00 45.44 5.14
4162 4388 1.856597 GCGCAAATGCAATTCAGGATC 59.143 47.619 0.30 0.00 42.21 3.36
4180 4406 2.806198 CACTTTGGCATTGGCGCG 60.806 61.111 0.00 0.00 42.47 6.86
4205 4431 0.388134 TTACAGGCGACGACAGAAGC 60.388 55.000 2.19 0.00 0.00 3.86
4233 4459 7.129972 TCCCTCTAATCACTAGTTTAGGGAGTA 59.870 40.741 13.63 2.44 42.39 2.59
4234 4460 6.068379 TCCCTCTAATCACTAGTTTAGGGAGT 60.068 42.308 13.63 1.45 42.39 3.85
4236 4462 6.068379 ACTCCCTCTAATCACTAGTTTAGGGA 60.068 42.308 13.63 13.68 42.29 4.20
4252 4502 7.778853 CCTGTTCATTAGTTACTACTCCCTCTA 59.221 40.741 0.00 0.00 35.78 2.43
4256 4506 6.786967 TCCTGTTCATTAGTTACTACTCCC 57.213 41.667 0.00 0.00 35.78 4.30
4275 4527 2.057922 AGGTGGTGGGCTATATTCCTG 58.942 52.381 0.00 0.00 0.00 3.86
4363 4615 6.040278 TGCTACAACAAAGATGGTTGAATGAA 59.960 34.615 11.76 0.00 46.56 2.57
4367 4619 6.403866 AATGCTACAACAAAGATGGTTGAA 57.596 33.333 11.76 0.00 46.56 2.69
4372 4624 4.949856 AGGGTAATGCTACAACAAAGATGG 59.050 41.667 0.00 0.00 0.00 3.51
4393 4645 0.530650 CCGACGACATGGATGGAAGG 60.531 60.000 0.00 0.00 0.00 3.46
4438 4690 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4439 4691 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4440 4692 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4441 4693 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4442 4694 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4443 4695 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
4444 4696 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4445 4697 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
4446 4698 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
4447 4699 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
4448 4700 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
4449 4701 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
4450 4702 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
4451 4703 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
4452 4704 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
4453 4705 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
4454 4706 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
4455 4707 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
4456 4708 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
4457 4709 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
4458 4710 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
4459 4711 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
4460 4712 5.900339 TTAGATACATCCATTTTCGCGAC 57.100 39.130 9.15 0.00 0.00 5.19
4461 4713 7.148869 CGTATTTAGATACATCCATTTTCGCGA 60.149 37.037 3.71 3.71 38.42 5.87
4462 4714 6.948228 CGTATTTAGATACATCCATTTTCGCG 59.052 38.462 0.00 0.00 38.42 5.87
4463 4715 7.793902 ACGTATTTAGATACATCCATTTTCGC 58.206 34.615 4.47 0.00 38.42 4.70
4464 4716 9.193133 AGACGTATTTAGATACATCCATTTTCG 57.807 33.333 4.47 0.00 38.42 3.46
4481 4733 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
4482 4734 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
4483 4735 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
4484 4736 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
4485 4737 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
4486 4738 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
4487 4739 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
4488 4740 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
4489 4741 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
4490 4742 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
4491 4743 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
4492 4744 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
4493 4745 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
4494 4746 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
4495 4747 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
4496 4748 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
4497 4749 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
4498 4750 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
4499 4751 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
4500 4752 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
4501 4753 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
4502 4754 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
4503 4755 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
4504 4756 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
4505 4757 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
4506 4758 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
4507 4759 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4508 4760 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4509 4761 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4510 4762 2.564062 TCCTCCGTTCGGAATTACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
4511 4763 3.241067 TCCTCCGTTCGGAATTACTTG 57.759 47.619 14.79 1.97 33.41 3.16
4512 4764 3.260128 ACTTCCTCCGTTCGGAATTACTT 59.740 43.478 14.79 0.00 39.64 2.24
4513 4765 2.830321 ACTTCCTCCGTTCGGAATTACT 59.170 45.455 14.79 0.00 39.64 2.24
4514 4766 3.242549 ACTTCCTCCGTTCGGAATTAC 57.757 47.619 14.79 0.00 39.64 1.89
4515 4767 4.096984 GTCTACTTCCTCCGTTCGGAATTA 59.903 45.833 14.79 1.22 39.64 1.40
4516 4768 3.094572 TCTACTTCCTCCGTTCGGAATT 58.905 45.455 14.79 0.00 39.64 2.17
4517 4769 2.426381 GTCTACTTCCTCCGTTCGGAAT 59.574 50.000 14.79 2.09 39.64 3.01
4518 4770 1.815003 GTCTACTTCCTCCGTTCGGAA 59.185 52.381 14.79 0.00 38.18 4.30
4519 4771 1.271543 TGTCTACTTCCTCCGTTCGGA 60.272 52.381 13.34 13.34 0.00 4.55
4520 4772 1.171308 TGTCTACTTCCTCCGTTCGG 58.829 55.000 4.74 4.74 0.00 4.30
4521 4773 2.163815 ACATGTCTACTTCCTCCGTTCG 59.836 50.000 0.00 0.00 0.00 3.95
4522 4774 3.512680 CACATGTCTACTTCCTCCGTTC 58.487 50.000 0.00 0.00 0.00 3.95
4523 4775 2.353803 GCACATGTCTACTTCCTCCGTT 60.354 50.000 0.00 0.00 0.00 4.44
4524 4776 1.204941 GCACATGTCTACTTCCTCCGT 59.795 52.381 0.00 0.00 0.00 4.69
4525 4777 1.478510 AGCACATGTCTACTTCCTCCG 59.521 52.381 0.00 0.00 0.00 4.63
4526 4778 3.265791 CAAGCACATGTCTACTTCCTCC 58.734 50.000 0.00 0.00 0.00 4.30
4527 4779 2.675348 GCAAGCACATGTCTACTTCCTC 59.325 50.000 0.00 0.00 0.00 3.71
4528 4780 2.304180 AGCAAGCACATGTCTACTTCCT 59.696 45.455 0.00 0.00 0.00 3.36
4529 4781 2.704572 AGCAAGCACATGTCTACTTCC 58.295 47.619 0.00 0.00 0.00 3.46
4530 4782 3.669023 GCAAGCAAGCACATGTCTACTTC 60.669 47.826 0.00 0.00 0.00 3.01
4531 4783 2.227388 GCAAGCAAGCACATGTCTACTT 59.773 45.455 0.00 0.00 0.00 2.24
4532 4784 1.808945 GCAAGCAAGCACATGTCTACT 59.191 47.619 0.00 0.00 0.00 2.57
4533 4785 1.536766 TGCAAGCAAGCACATGTCTAC 59.463 47.619 0.00 0.00 40.11 2.59
4534 4786 1.894881 TGCAAGCAAGCACATGTCTA 58.105 45.000 0.00 0.00 40.11 2.59
4535 4787 1.034356 TTGCAAGCAAGCACATGTCT 58.966 45.000 2.89 0.00 45.61 3.41
4568 4820 4.553547 GCATCCTTTACATCATGTTCTCGC 60.554 45.833 0.00 0.00 0.00 5.03
4569 4821 4.571984 TGCATCCTTTACATCATGTTCTCG 59.428 41.667 0.00 0.00 0.00 4.04
4577 4829 5.423886 TGTTATCGTGCATCCTTTACATCA 58.576 37.500 0.00 0.00 0.00 3.07
4586 4838 1.334059 CGCCATTGTTATCGTGCATCC 60.334 52.381 0.00 0.00 0.00 3.51
4588 4840 0.029300 GCGCCATTGTTATCGTGCAT 59.971 50.000 0.00 0.00 30.06 3.96
4593 4845 2.375110 GAACATGCGCCATTGTTATCG 58.625 47.619 17.10 0.00 0.00 2.92
4605 4857 1.080569 GGTTTGGCTGGAACATGCG 60.081 57.895 0.00 0.00 38.20 4.73
4656 4908 9.935682 ATATATACTTGTTGAAATCTTGTTGCG 57.064 29.630 0.00 0.00 0.00 4.85
4683 4935 8.040716 CGAAAGGATAACCATTACTTGTCTTT 57.959 34.615 0.00 0.00 38.94 2.52
4711 4963 4.546570 TCTTATGTATCCGATGCGTTCTG 58.453 43.478 0.00 0.00 0.00 3.02
4713 4965 6.237595 GCTAATCTTATGTATCCGATGCGTTC 60.238 42.308 0.00 0.00 0.00 3.95
4717 4969 8.648557 TTATGCTAATCTTATGTATCCGATGC 57.351 34.615 0.00 0.00 0.00 3.91
4730 4982 8.292448 CGCATTCCTTTGTATTATGCTAATCTT 58.708 33.333 0.00 0.00 39.45 2.40
4733 4985 7.510549 ACGCATTCCTTTGTATTATGCTAAT 57.489 32.000 0.00 0.00 39.45 1.73
4736 4988 5.450412 CCAACGCATTCCTTTGTATTATGCT 60.450 40.000 0.00 0.00 39.45 3.79
4740 4992 7.201750 GGATTACCAACGCATTCCTTTGTATTA 60.202 37.037 0.00 0.00 35.97 0.98
4764 5016 4.558178 TGTTCGAACGTATTTTGCTAGGA 58.442 39.130 22.48 0.00 0.00 2.94
4777 5029 1.130749 TGGGTTGTTGTTGTTCGAACG 59.869 47.619 22.48 0.00 0.00 3.95
4779 5031 3.017442 TGATGGGTTGTTGTTGTTCGAA 58.983 40.909 0.00 0.00 0.00 3.71
4784 5036 3.096092 AGTTGTGATGGGTTGTTGTTGT 58.904 40.909 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.