Multiple sequence alignment - TraesCS3B01G340500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G340500 chr3B 100.000 3170 0 0 1 3170 547112788 547109619 0.000000e+00 5854.0
1 TraesCS3B01G340500 chr3B 74.671 683 138 29 1472 2135 755806058 755806724 1.450000e-68 270.0
2 TraesCS3B01G340500 chr3A 92.837 2136 102 17 370 2466 531265235 531267358 0.000000e+00 3049.0
3 TraesCS3B01G340500 chr3A 75.700 679 132 25 1475 2135 701218942 701218279 3.070000e-80 309.0
4 TraesCS3B01G340500 chr3D 90.803 1196 77 14 1413 2599 419895118 419893947 0.000000e+00 1568.0
5 TraesCS3B01G340500 chr3D 90.973 565 31 8 732 1285 419895727 419895172 0.000000e+00 743.0
6 TraesCS3B01G340500 chr3D 93.731 335 14 6 370 698 419896062 419895729 2.200000e-136 496.0
7 TraesCS3B01G340500 chr3D 87.342 395 44 6 2658 3049 419893617 419893226 6.240000e-122 448.0
8 TraesCS3B01G340500 chr3D 88.235 289 32 2 84 371 517011446 517011159 8.420000e-91 344.0
9 TraesCS3B01G340500 chr3D 87.940 199 24 0 1472 1670 566081007 566081205 5.290000e-58 235.0
10 TraesCS3B01G340500 chr3D 86.957 92 9 3 3079 3170 419893253 419893165 2.010000e-17 100.0
11 TraesCS3B01G340500 chr3D 86.667 90 10 2 2488 2575 494645800 494645711 7.240000e-17 99.0
12 TraesCS3B01G340500 chr7D 80.256 704 125 13 1437 2132 35850709 35850012 4.690000e-143 518.0
13 TraesCS3B01G340500 chr7D 76.114 561 113 14 1437 1990 35942463 35941917 1.120000e-69 274.0
14 TraesCS3B01G340500 chr7D 89.888 89 7 1 2487 2573 18935195 18935107 2.580000e-21 113.0
15 TraesCS3B01G340500 chr7D 83.478 115 14 5 2463 2575 486935805 486935916 5.590000e-18 102.0
16 TraesCS3B01G340500 chr7D 97.143 35 1 0 1315 1349 89759182 89759216 3.410000e-05 60.2
17 TraesCS3B01G340500 chr1D 89.726 292 29 1 81 371 326787971 326788262 3.860000e-99 372.0
18 TraesCS3B01G340500 chr1D 89.384 292 30 1 82 373 340670220 340670510 1.800000e-97 366.0
19 TraesCS3B01G340500 chr1D 75.775 677 152 12 1446 2116 9745190 9745860 6.550000e-87 331.0
20 TraesCS3B01G340500 chr1D 84.091 132 15 6 2472 2599 20825652 20825523 4.290000e-24 122.0
21 TraesCS3B01G340500 chr1D 86.667 90 9 3 2488 2575 3420717 3420805 2.600000e-16 97.1
22 TraesCS3B01G340500 chr5D 89.691 291 28 2 82 371 483234121 483234410 1.390000e-98 370.0
23 TraesCS3B01G340500 chr5D 89.384 292 29 2 82 371 339716950 339717241 1.800000e-97 366.0
24 TraesCS3B01G340500 chr5D 95.312 64 3 0 2488 2551 529693473 529693410 5.590000e-18 102.0
25 TraesCS3B01G340500 chr5D 86.667 90 10 1 2488 2575 376183976 376184065 7.240000e-17 99.0
26 TraesCS3B01G340500 chr5D 86.667 90 10 2 2488 2575 386063911 386063822 7.240000e-17 99.0
27 TraesCS3B01G340500 chr5D 86.667 90 9 2 2488 2575 481975566 481975478 2.600000e-16 97.1
28 TraesCS3B01G340500 chr1B 89.116 294 29 3 82 373 456275499 456275791 2.320000e-96 363.0
29 TraesCS3B01G340500 chr1B 86.349 315 37 4 71 383 560496786 560496476 3.920000e-89 339.0
30 TraesCS3B01G340500 chr1B 86.864 236 29 2 1446 1680 14138310 14138544 2.420000e-66 263.0
31 TraesCS3B01G340500 chr1B 76.325 283 59 8 1838 2116 14138702 14138980 9.160000e-31 145.0
32 TraesCS3B01G340500 chr1B 82.963 135 17 5 2466 2594 650455269 650455403 2.000000e-22 117.0
33 TraesCS3B01G340500 chr1B 88.889 90 8 2 2488 2575 481278100 481278011 3.340000e-20 110.0
34 TraesCS3B01G340500 chr1B 82.857 70 9 2 3073 3139 180525592 180525523 3.410000e-05 60.2
35 TraesCS3B01G340500 chr7B 89.003 291 31 1 82 371 634277093 634277383 3.010000e-95 359.0
36 TraesCS3B01G340500 chr2D 88.699 292 31 2 82 371 611247669 611247960 3.890000e-94 355.0
37 TraesCS3B01G340500 chr2D 90.588 85 7 1 2466 2550 317491974 317492057 9.290000e-21 111.0
38 TraesCS3B01G340500 chr1A 75.847 679 148 16 1446 2116 11555172 11555842 6.550000e-87 331.0
39 TraesCS3B01G340500 chr1A 100.000 31 0 0 3077 3107 361041747 361041777 1.230000e-04 58.4
40 TraesCS3B01G340500 chr5B 86.282 277 36 2 1462 1737 508038576 508038851 1.850000e-77 300.0
41 TraesCS3B01G340500 chr4A 86.047 129 15 3 2474 2601 707070251 707070125 5.520000e-28 135.0
42 TraesCS3B01G340500 chr4A 82.836 134 18 4 2466 2599 707067702 707067574 7.190000e-22 115.0
43 TraesCS3B01G340500 chr7A 85.271 129 14 5 2466 2593 566986374 566986250 9.230000e-26 128.0
44 TraesCS3B01G340500 chr7A 88.889 90 6 4 2488 2574 13768650 13768562 1.200000e-19 108.0
45 TraesCS3B01G340500 chr2A 85.470 117 8 7 2466 2575 658467122 658467008 2.580000e-21 113.0
46 TraesCS3B01G340500 chr6D 90.909 77 7 0 2488 2564 102461852 102461776 1.560000e-18 104.0
47 TraesCS3B01G340500 chr6D 95.312 64 3 0 2488 2551 30577935 30577872 5.590000e-18 102.0
48 TraesCS3B01G340500 chrUn 84.211 95 14 1 2498 2591 10076436 10076342 1.210000e-14 91.6
49 TraesCS3B01G340500 chr4D 85.938 64 6 3 3078 3139 478745840 478745778 7.340000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G340500 chr3B 547109619 547112788 3169 True 5854 5854 100.0000 1 3170 1 chr3B.!!$R1 3169
1 TraesCS3B01G340500 chr3B 755806058 755806724 666 False 270 270 74.6710 1472 2135 1 chr3B.!!$F1 663
2 TraesCS3B01G340500 chr3A 531265235 531267358 2123 False 3049 3049 92.8370 370 2466 1 chr3A.!!$F1 2096
3 TraesCS3B01G340500 chr3A 701218279 701218942 663 True 309 309 75.7000 1475 2135 1 chr3A.!!$R1 660
4 TraesCS3B01G340500 chr3D 419893165 419896062 2897 True 671 1568 89.9612 370 3170 5 chr3D.!!$R3 2800
5 TraesCS3B01G340500 chr7D 35850012 35850709 697 True 518 518 80.2560 1437 2132 1 chr7D.!!$R2 695
6 TraesCS3B01G340500 chr7D 35941917 35942463 546 True 274 274 76.1140 1437 1990 1 chr7D.!!$R3 553
7 TraesCS3B01G340500 chr1D 9745190 9745860 670 False 331 331 75.7750 1446 2116 1 chr1D.!!$F2 670
8 TraesCS3B01G340500 chr1B 14138310 14138980 670 False 204 263 81.5945 1446 2116 2 chr1B.!!$F3 670
9 TraesCS3B01G340500 chr1A 11555172 11555842 670 False 331 331 75.8470 1446 2116 1 chr1A.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.036952 ATATGAGCGCTTGCGCCTAT 60.037 50.0 31.81 26.62 45.69 2.57 F
1100 1121 0.107654 CAACCCTCGGAGAATGGTCC 60.108 60.0 6.58 0.00 40.30 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 1319 0.036875 AGTAACAGAGTTGGCCAGGC 59.963 55.0 5.11 1.26 0.00 4.85 R
2171 2202 0.179056 ATGTCCATAAGGGCGAACGG 60.179 55.0 0.00 0.00 44.71 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.522731 CGACGCCCCAGGAGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
27 28 3.151022 GACGCCCCAGGAGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
28 29 4.787280 ACGCCCCAGGAGAGAGGG 62.787 72.222 0.00 0.00 45.04 4.30
45 46 3.531821 GGGGGAGAGAGGAGAAGAG 57.468 63.158 0.00 0.00 0.00 2.85
46 47 0.930726 GGGGGAGAGAGGAGAAGAGA 59.069 60.000 0.00 0.00 0.00 3.10
47 48 1.133482 GGGGGAGAGAGGAGAAGAGAG 60.133 61.905 0.00 0.00 0.00 3.20
48 49 1.692411 GGGAGAGAGGAGAAGAGAGC 58.308 60.000 0.00 0.00 0.00 4.09
49 50 1.064017 GGGAGAGAGGAGAAGAGAGCA 60.064 57.143 0.00 0.00 0.00 4.26
50 51 2.024414 GGAGAGAGGAGAAGAGAGCAC 58.976 57.143 0.00 0.00 0.00 4.40
51 52 2.024414 GAGAGAGGAGAAGAGAGCACC 58.976 57.143 0.00 0.00 0.00 5.01
52 53 1.357420 AGAGAGGAGAAGAGAGCACCA 59.643 52.381 0.00 0.00 0.00 4.17
53 54 2.024080 AGAGAGGAGAAGAGAGCACCAT 60.024 50.000 0.00 0.00 0.00 3.55
54 55 2.362077 GAGAGGAGAAGAGAGCACCATC 59.638 54.545 0.00 0.00 0.00 3.51
55 56 1.066908 GAGGAGAAGAGAGCACCATCG 59.933 57.143 0.00 0.00 0.00 3.84
56 57 0.529555 GGAGAAGAGAGCACCATCGC 60.530 60.000 0.00 0.00 0.00 4.58
57 58 0.174389 GAGAAGAGAGCACCATCGCA 59.826 55.000 0.00 0.00 0.00 5.10
58 59 0.108424 AGAAGAGAGCACCATCGCAC 60.108 55.000 0.00 0.00 0.00 5.34
59 60 1.078848 AAGAGAGCACCATCGCACC 60.079 57.895 0.00 0.00 0.00 5.01
60 61 1.548357 AAGAGAGCACCATCGCACCT 61.548 55.000 0.00 0.00 0.00 4.00
61 62 1.520342 GAGAGCACCATCGCACCTC 60.520 63.158 0.00 0.00 0.00 3.85
62 63 2.887568 GAGCACCATCGCACCTCG 60.888 66.667 0.00 0.00 40.15 4.63
63 64 3.649277 GAGCACCATCGCACCTCGT 62.649 63.158 0.00 0.00 39.67 4.18
64 65 2.183300 GCACCATCGCACCTCGTA 59.817 61.111 0.00 0.00 39.67 3.43
65 66 1.447140 GCACCATCGCACCTCGTAA 60.447 57.895 0.00 0.00 39.67 3.18
66 67 1.421410 GCACCATCGCACCTCGTAAG 61.421 60.000 0.00 0.00 39.67 2.34
67 68 0.108804 CACCATCGCACCTCGTAAGT 60.109 55.000 0.00 0.00 39.67 2.24
68 69 0.172803 ACCATCGCACCTCGTAAGTC 59.827 55.000 0.00 0.00 39.67 3.01
69 70 0.456221 CCATCGCACCTCGTAAGTCT 59.544 55.000 0.00 0.00 39.67 3.24
70 71 1.135083 CCATCGCACCTCGTAAGTCTT 60.135 52.381 0.00 0.00 39.67 3.01
71 72 1.920574 CATCGCACCTCGTAAGTCTTG 59.079 52.381 0.00 0.00 39.67 3.02
72 73 0.956633 TCGCACCTCGTAAGTCTTGT 59.043 50.000 0.00 0.00 39.67 3.16
73 74 1.060713 CGCACCTCGTAAGTCTTGTG 58.939 55.000 0.00 0.00 39.48 3.33
74 75 1.602165 CGCACCTCGTAAGTCTTGTGT 60.602 52.381 0.00 0.00 39.48 3.72
75 76 2.480845 GCACCTCGTAAGTCTTGTGTT 58.519 47.619 0.00 0.00 39.48 3.32
76 77 2.475487 GCACCTCGTAAGTCTTGTGTTC 59.525 50.000 0.00 0.00 39.48 3.18
77 78 3.799232 GCACCTCGTAAGTCTTGTGTTCT 60.799 47.826 0.00 0.00 39.48 3.01
78 79 3.736252 CACCTCGTAAGTCTTGTGTTCTG 59.264 47.826 0.00 0.00 39.48 3.02
79 80 3.635373 ACCTCGTAAGTCTTGTGTTCTGA 59.365 43.478 0.00 0.00 39.48 3.27
80 81 4.281182 ACCTCGTAAGTCTTGTGTTCTGAT 59.719 41.667 0.00 0.00 39.48 2.90
81 82 4.623167 CCTCGTAAGTCTTGTGTTCTGATG 59.377 45.833 0.00 0.00 39.48 3.07
82 83 3.987868 TCGTAAGTCTTGTGTTCTGATGC 59.012 43.478 0.00 0.00 39.48 3.91
83 84 3.181540 CGTAAGTCTTGTGTTCTGATGCG 60.182 47.826 0.00 0.00 0.00 4.73
84 85 2.820059 AGTCTTGTGTTCTGATGCGA 57.180 45.000 0.00 0.00 0.00 5.10
85 86 3.111853 AGTCTTGTGTTCTGATGCGAA 57.888 42.857 0.00 0.00 0.00 4.70
86 87 3.668447 AGTCTTGTGTTCTGATGCGAAT 58.332 40.909 0.00 0.00 0.00 3.34
87 88 3.681897 AGTCTTGTGTTCTGATGCGAATC 59.318 43.478 0.00 0.00 0.00 2.52
88 89 3.433274 GTCTTGTGTTCTGATGCGAATCA 59.567 43.478 5.80 5.80 0.00 2.57
89 90 4.064388 TCTTGTGTTCTGATGCGAATCAA 58.936 39.130 7.67 0.00 0.00 2.57
90 91 3.811722 TGTGTTCTGATGCGAATCAAC 57.188 42.857 7.67 4.37 0.00 3.18
91 92 2.483877 TGTGTTCTGATGCGAATCAACC 59.516 45.455 7.67 0.00 0.00 3.77
92 93 2.744202 GTGTTCTGATGCGAATCAACCT 59.256 45.455 7.67 0.00 0.00 3.50
93 94 2.743664 TGTTCTGATGCGAATCAACCTG 59.256 45.455 7.67 0.00 0.00 4.00
94 95 2.744202 GTTCTGATGCGAATCAACCTGT 59.256 45.455 7.67 0.00 0.00 4.00
95 96 3.885724 TCTGATGCGAATCAACCTGTA 57.114 42.857 7.67 0.00 0.00 2.74
96 97 3.785486 TCTGATGCGAATCAACCTGTAG 58.215 45.455 7.67 0.00 0.00 2.74
97 98 3.195610 TCTGATGCGAATCAACCTGTAGT 59.804 43.478 7.67 0.00 0.00 2.73
98 99 3.935203 CTGATGCGAATCAACCTGTAGTT 59.065 43.478 7.67 0.00 40.16 2.24
110 111 5.422214 AACCTGTAGTTGGATGGTTAGAG 57.578 43.478 0.00 0.00 38.99 2.43
111 112 3.775316 ACCTGTAGTTGGATGGTTAGAGG 59.225 47.826 0.00 0.00 33.91 3.69
112 113 3.134804 CCTGTAGTTGGATGGTTAGAGGG 59.865 52.174 0.00 0.00 0.00 4.30
113 114 4.030913 CTGTAGTTGGATGGTTAGAGGGA 58.969 47.826 0.00 0.00 0.00 4.20
114 115 3.773119 TGTAGTTGGATGGTTAGAGGGAC 59.227 47.826 0.00 0.00 0.00 4.46
116 117 2.840651 AGTTGGATGGTTAGAGGGACTG 59.159 50.000 0.00 0.00 41.55 3.51
117 118 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
118 119 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
119 120 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
120 121 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
121 122 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
122 123 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
123 124 3.798515 TGGTTAGAGGGACTGTGGTATT 58.201 45.455 0.00 0.00 41.55 1.89
124 125 3.773119 TGGTTAGAGGGACTGTGGTATTC 59.227 47.826 0.00 0.00 41.55 1.75
125 126 3.134262 GGTTAGAGGGACTGTGGTATTCC 59.866 52.174 0.00 0.00 41.55 3.01
126 127 1.880941 AGAGGGACTGTGGTATTCCC 58.119 55.000 0.00 0.00 46.22 3.97
134 135 3.844063 TGGTATTCCCACCCCACC 58.156 61.111 0.00 0.00 38.72 4.61
135 136 1.151565 TGGTATTCCCACCCCACCA 60.152 57.895 0.00 0.00 38.72 4.17
136 137 1.211567 TGGTATTCCCACCCCACCAG 61.212 60.000 0.00 0.00 38.72 4.00
137 138 0.917333 GGTATTCCCACCCCACCAGA 60.917 60.000 0.00 0.00 31.91 3.86
138 139 0.546598 GTATTCCCACCCCACCAGAG 59.453 60.000 0.00 0.00 0.00 3.35
139 140 0.120377 TATTCCCACCCCACCAGAGT 59.880 55.000 0.00 0.00 0.00 3.24
140 141 0.776080 ATTCCCACCCCACCAGAGTT 60.776 55.000 0.00 0.00 0.00 3.01
141 142 0.996762 TTCCCACCCCACCAGAGTTT 60.997 55.000 0.00 0.00 0.00 2.66
142 143 0.104356 TCCCACCCCACCAGAGTTTA 60.104 55.000 0.00 0.00 0.00 2.01
143 144 0.774908 CCCACCCCACCAGAGTTTAA 59.225 55.000 0.00 0.00 0.00 1.52
144 145 1.146152 CCCACCCCACCAGAGTTTAAA 59.854 52.381 0.00 0.00 0.00 1.52
145 146 2.225267 CCCACCCCACCAGAGTTTAAAT 60.225 50.000 0.00 0.00 0.00 1.40
146 147 3.089284 CCACCCCACCAGAGTTTAAATC 58.911 50.000 0.00 0.00 0.00 2.17
147 148 3.089284 CACCCCACCAGAGTTTAAATCC 58.911 50.000 0.00 0.00 0.00 3.01
148 149 2.993863 ACCCCACCAGAGTTTAAATCCT 59.006 45.455 0.00 0.00 0.00 3.24
149 150 3.245264 ACCCCACCAGAGTTTAAATCCTG 60.245 47.826 10.90 10.90 0.00 3.86
154 155 3.690460 CCAGAGTTTAAATCCTGGTGCT 58.310 45.455 21.42 1.70 40.84 4.40
155 156 4.082125 CCAGAGTTTAAATCCTGGTGCTT 58.918 43.478 21.42 0.00 40.84 3.91
156 157 4.082571 CCAGAGTTTAAATCCTGGTGCTTG 60.083 45.833 21.42 4.83 40.84 4.01
157 158 3.507622 AGAGTTTAAATCCTGGTGCTTGC 59.492 43.478 0.00 0.00 0.00 4.01
158 159 3.230134 AGTTTAAATCCTGGTGCTTGCA 58.770 40.909 0.00 0.00 0.00 4.08
159 160 3.834231 AGTTTAAATCCTGGTGCTTGCAT 59.166 39.130 0.00 0.00 0.00 3.96
160 161 4.284234 AGTTTAAATCCTGGTGCTTGCATT 59.716 37.500 0.00 0.00 0.00 3.56
161 162 4.888326 TTAAATCCTGGTGCTTGCATTT 57.112 36.364 0.00 0.00 0.00 2.32
162 163 5.991933 TTAAATCCTGGTGCTTGCATTTA 57.008 34.783 0.00 0.00 0.00 1.40
163 164 6.543430 TTAAATCCTGGTGCTTGCATTTAT 57.457 33.333 0.00 0.00 0.00 1.40
164 165 5.425196 AAATCCTGGTGCTTGCATTTATT 57.575 34.783 0.00 0.00 0.00 1.40
165 166 5.425196 AATCCTGGTGCTTGCATTTATTT 57.575 34.783 0.00 0.00 0.00 1.40
166 167 4.454728 TCCTGGTGCTTGCATTTATTTC 57.545 40.909 0.00 0.00 0.00 2.17
167 168 3.831333 TCCTGGTGCTTGCATTTATTTCA 59.169 39.130 0.00 0.00 0.00 2.69
168 169 4.082081 TCCTGGTGCTTGCATTTATTTCAG 60.082 41.667 0.00 0.00 0.00 3.02
169 170 4.322198 CCTGGTGCTTGCATTTATTTCAGT 60.322 41.667 0.00 0.00 0.00 3.41
170 171 5.105797 CCTGGTGCTTGCATTTATTTCAGTA 60.106 40.000 0.00 0.00 0.00 2.74
171 172 6.406177 CCTGGTGCTTGCATTTATTTCAGTAT 60.406 38.462 0.00 0.00 0.00 2.12
172 173 6.934056 TGGTGCTTGCATTTATTTCAGTATT 58.066 32.000 0.00 0.00 0.00 1.89
173 174 7.385267 TGGTGCTTGCATTTATTTCAGTATTT 58.615 30.769 0.00 0.00 0.00 1.40
174 175 7.877097 TGGTGCTTGCATTTATTTCAGTATTTT 59.123 29.630 0.00 0.00 0.00 1.82
175 176 8.382875 GGTGCTTGCATTTATTTCAGTATTTTC 58.617 33.333 0.00 0.00 0.00 2.29
176 177 8.103924 GTGCTTGCATTTATTTCAGTATTTTCG 58.896 33.333 0.00 0.00 0.00 3.46
177 178 7.275341 TGCTTGCATTTATTTCAGTATTTTCGG 59.725 33.333 0.00 0.00 0.00 4.30
178 179 7.518731 TTGCATTTATTTCAGTATTTTCGGC 57.481 32.000 0.00 0.00 0.00 5.54
179 180 5.741510 TGCATTTATTTCAGTATTTTCGGCG 59.258 36.000 0.00 0.00 0.00 6.46
180 181 5.968848 GCATTTATTTCAGTATTTTCGGCGA 59.031 36.000 4.99 4.99 0.00 5.54
181 182 6.636850 GCATTTATTTCAGTATTTTCGGCGAT 59.363 34.615 11.76 0.00 0.00 4.58
182 183 7.357532 GCATTTATTTCAGTATTTTCGGCGATG 60.358 37.037 11.76 4.79 0.00 3.84
183 184 3.398954 TTTCAGTATTTTCGGCGATGC 57.601 42.857 11.76 0.00 0.00 3.91
184 185 0.927537 TCAGTATTTTCGGCGATGCG 59.072 50.000 11.76 0.00 0.00 4.73
196 197 2.669419 CGATGCGCATTCAGTGAGA 58.331 52.632 26.12 0.00 0.00 3.27
197 198 0.575859 CGATGCGCATTCAGTGAGAG 59.424 55.000 26.12 4.12 0.00 3.20
198 199 0.935898 GATGCGCATTCAGTGAGAGG 59.064 55.000 26.12 0.00 0.00 3.69
199 200 0.538584 ATGCGCATTCAGTGAGAGGA 59.461 50.000 19.28 0.00 0.00 3.71
200 201 0.108472 TGCGCATTCAGTGAGAGGAG 60.108 55.000 5.66 0.00 0.00 3.69
201 202 0.174389 GCGCATTCAGTGAGAGGAGA 59.826 55.000 0.30 0.00 0.00 3.71
202 203 1.919918 CGCATTCAGTGAGAGGAGAC 58.080 55.000 0.00 0.00 0.00 3.36
203 204 1.796982 CGCATTCAGTGAGAGGAGACG 60.797 57.143 0.00 0.00 0.00 4.18
204 205 1.203523 GCATTCAGTGAGAGGAGACGT 59.796 52.381 0.00 0.00 0.00 4.34
205 206 2.353208 GCATTCAGTGAGAGGAGACGTT 60.353 50.000 0.00 0.00 0.00 3.99
206 207 3.506810 CATTCAGTGAGAGGAGACGTTC 58.493 50.000 0.00 0.00 0.00 3.95
218 219 4.771684 ACGTTCCCGTCGATAACG 57.228 55.556 22.22 22.22 46.28 3.18
229 230 0.659427 TCGATAACGAGGTGCCTACG 59.341 55.000 0.00 0.00 43.81 3.51
230 231 0.659427 CGATAACGAGGTGCCTACGA 59.341 55.000 13.88 0.00 42.66 3.43
231 232 1.266175 CGATAACGAGGTGCCTACGAT 59.734 52.381 13.88 7.29 42.66 3.73
232 233 2.481568 CGATAACGAGGTGCCTACGATA 59.518 50.000 13.88 8.76 42.66 2.92
233 234 3.058708 CGATAACGAGGTGCCTACGATAA 60.059 47.826 13.88 3.39 42.66 1.75
234 235 2.573941 AACGAGGTGCCTACGATAAC 57.426 50.000 13.88 0.00 0.00 1.89
235 236 1.760192 ACGAGGTGCCTACGATAACT 58.240 50.000 13.88 0.00 0.00 2.24
236 237 2.097825 ACGAGGTGCCTACGATAACTT 58.902 47.619 13.88 0.00 0.00 2.66
237 238 2.098770 ACGAGGTGCCTACGATAACTTC 59.901 50.000 13.88 0.00 0.00 3.01
260 261 9.573102 CTTCGTAAATTTCAAGATGATATGTCG 57.427 33.333 0.00 0.00 0.00 4.35
261 262 8.072238 TCGTAAATTTCAAGATGATATGTCGG 57.928 34.615 0.00 0.00 0.00 4.79
262 263 6.792250 CGTAAATTTCAAGATGATATGTCGGC 59.208 38.462 0.00 0.00 0.00 5.54
263 264 6.949352 AAATTTCAAGATGATATGTCGGCT 57.051 33.333 0.00 0.00 0.00 5.52
264 265 6.551385 AATTTCAAGATGATATGTCGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
265 266 4.670896 TTCAAGATGATATGTCGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
266 267 4.248691 TCAAGATGATATGTCGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
267 268 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
268 269 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
269 270 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
270 271 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
271 272 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
272 273 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
273 274 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
274 275 0.888619 ATGTCGGCTCAGTCTTTCGA 59.111 50.000 0.00 0.00 0.00 3.71
275 276 0.671796 TGTCGGCTCAGTCTTTCGAA 59.328 50.000 0.00 0.00 0.00 3.71
276 277 1.335964 TGTCGGCTCAGTCTTTCGAAG 60.336 52.381 0.00 0.00 0.00 3.79
277 278 0.243907 TCGGCTCAGTCTTTCGAAGG 59.756 55.000 0.00 0.00 0.00 3.46
278 279 0.038159 CGGCTCAGTCTTTCGAAGGT 60.038 55.000 7.20 0.00 0.00 3.50
279 280 1.433534 GGCTCAGTCTTTCGAAGGTG 58.566 55.000 7.20 0.00 0.00 4.00
280 281 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
281 282 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
282 283 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
283 284 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
284 285 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
285 286 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
286 287 3.862267 CAGTCTTTCGAAGGTGCTCATAG 59.138 47.826 7.20 0.00 0.00 2.23
287 288 3.118956 AGTCTTTCGAAGGTGCTCATAGG 60.119 47.826 7.20 0.00 0.00 2.57
288 289 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
289 290 0.830648 TTCGAAGGTGCTCATAGGGG 59.169 55.000 0.00 0.00 0.00 4.79
290 291 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
291 292 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
292 293 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
293 294 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
294 295 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
295 296 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
296 297 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
297 298 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
298 299 1.576757 TGCTCATAGGGGTAGGGTGTA 59.423 52.381 0.00 0.00 0.00 2.90
299 300 1.969208 GCTCATAGGGGTAGGGTGTAC 59.031 57.143 0.00 0.00 0.00 2.90
300 301 2.236766 CTCATAGGGGTAGGGTGTACG 58.763 57.143 0.00 0.00 0.00 3.67
301 302 1.570501 TCATAGGGGTAGGGTGTACGT 59.429 52.381 0.00 0.00 0.00 3.57
302 303 1.684983 CATAGGGGTAGGGTGTACGTG 59.315 57.143 0.00 0.00 0.00 4.49
303 304 0.704076 TAGGGGTAGGGTGTACGTGT 59.296 55.000 0.00 0.00 0.00 4.49
304 305 0.901580 AGGGGTAGGGTGTACGTGTG 60.902 60.000 0.00 0.00 0.00 3.82
305 306 1.187567 GGGGTAGGGTGTACGTGTGT 61.188 60.000 0.00 0.00 0.00 3.72
306 307 0.037975 GGGTAGGGTGTACGTGTGTG 60.038 60.000 0.00 0.00 0.00 3.82
307 308 0.668401 GGTAGGGTGTACGTGTGTGC 60.668 60.000 0.00 0.00 0.00 4.57
308 309 1.005294 GTAGGGTGTACGTGTGTGCG 61.005 60.000 0.00 0.00 32.77 5.34
310 311 1.884004 GGGTGTACGTGTGTGCGTT 60.884 57.895 0.00 0.00 43.04 4.84
311 312 1.561250 GGTGTACGTGTGTGCGTTC 59.439 57.895 0.00 0.00 43.04 3.95
312 313 1.146957 GGTGTACGTGTGTGCGTTCA 61.147 55.000 0.00 0.00 43.04 3.18
313 314 0.856641 GTGTACGTGTGTGCGTTCAT 59.143 50.000 0.00 0.00 43.04 2.57
314 315 2.052891 GTGTACGTGTGTGCGTTCATA 58.947 47.619 0.00 0.00 43.04 2.15
315 316 2.090041 GTGTACGTGTGTGCGTTCATAG 59.910 50.000 0.00 0.00 43.04 2.23
316 317 1.652124 GTACGTGTGTGCGTTCATAGG 59.348 52.381 0.00 0.00 43.04 2.57
317 318 0.669318 ACGTGTGTGCGTTCATAGGG 60.669 55.000 0.00 0.00 43.04 3.53
318 319 0.669318 CGTGTGTGCGTTCATAGGGT 60.669 55.000 0.00 0.00 0.00 4.34
319 320 1.519408 GTGTGTGCGTTCATAGGGTT 58.481 50.000 0.00 0.00 0.00 4.11
320 321 1.196808 GTGTGTGCGTTCATAGGGTTG 59.803 52.381 0.00 0.00 0.00 3.77
321 322 1.070914 TGTGTGCGTTCATAGGGTTGA 59.929 47.619 0.00 0.00 0.00 3.18
322 323 1.732259 GTGTGCGTTCATAGGGTTGAG 59.268 52.381 0.00 0.00 0.00 3.02
323 324 1.346395 TGTGCGTTCATAGGGTTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
324 325 1.732259 GTGCGTTCATAGGGTTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
325 326 1.346395 TGCGTTCATAGGGTTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
326 327 2.563620 TGCGTTCATAGGGTTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
327 328 3.196901 TGCGTTCATAGGGTTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
328 329 3.555956 GCGTTCATAGGGTTGAGTGTATG 59.444 47.826 0.00 0.00 0.00 2.39
329 330 3.555956 CGTTCATAGGGTTGAGTGTATGC 59.444 47.826 0.00 0.00 0.00 3.14
330 331 3.452755 TCATAGGGTTGAGTGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
331 332 1.867233 CATAGGGTTGAGTGTATGCGC 59.133 52.381 0.00 0.00 0.00 6.09
332 333 0.179121 TAGGGTTGAGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
333 334 1.740296 GGGTTGAGTGTATGCGCGT 60.740 57.895 8.43 7.55 0.00 6.01
334 335 1.419922 GGTTGAGTGTATGCGCGTG 59.580 57.895 13.61 0.00 0.00 5.34
335 336 1.289109 GGTTGAGTGTATGCGCGTGT 61.289 55.000 13.61 0.00 0.00 4.49
336 337 1.342555 GTTGAGTGTATGCGCGTGTA 58.657 50.000 13.61 0.00 0.00 2.90
337 338 1.924524 GTTGAGTGTATGCGCGTGTAT 59.075 47.619 13.61 4.63 0.00 2.29
338 339 3.110358 GTTGAGTGTATGCGCGTGTATA 58.890 45.455 13.61 2.40 0.00 1.47
339 340 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
340 341 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
341 342 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
342 343 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
343 344 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
346 347 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
347 348 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
348 349 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
349 350 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
350 351 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
351 352 0.111089 GTGTATATGAGCGCTTGCGC 60.111 55.000 29.21 29.21 45.69 6.09
352 353 1.221466 TGTATATGAGCGCTTGCGCC 61.221 55.000 31.81 23.70 45.69 6.53
353 354 0.946221 GTATATGAGCGCTTGCGCCT 60.946 55.000 31.81 20.75 45.69 5.52
354 355 0.601057 TATATGAGCGCTTGCGCCTA 59.399 50.000 31.81 22.60 45.69 3.93
355 356 0.036952 ATATGAGCGCTTGCGCCTAT 60.037 50.000 31.81 26.62 45.69 2.57
356 357 0.601057 TATGAGCGCTTGCGCCTATA 59.399 50.000 31.81 25.73 45.69 1.31
357 358 0.946221 ATGAGCGCTTGCGCCTATAC 60.946 55.000 31.81 19.40 45.69 1.47
358 359 1.300233 GAGCGCTTGCGCCTATACT 60.300 57.895 31.81 15.66 45.69 2.12
359 360 1.552348 GAGCGCTTGCGCCTATACTG 61.552 60.000 31.81 0.00 45.69 2.74
360 361 1.883084 GCGCTTGCGCCTATACTGT 60.883 57.895 26.79 0.00 0.00 3.55
361 362 1.927210 CGCTTGCGCCTATACTGTG 59.073 57.895 4.18 0.00 0.00 3.66
362 363 0.806102 CGCTTGCGCCTATACTGTGT 60.806 55.000 4.18 0.00 0.00 3.72
363 364 1.369625 GCTTGCGCCTATACTGTGTT 58.630 50.000 4.18 0.00 0.00 3.32
364 365 2.546778 GCTTGCGCCTATACTGTGTTA 58.453 47.619 4.18 0.00 0.00 2.41
365 366 2.933906 GCTTGCGCCTATACTGTGTTAA 59.066 45.455 4.18 0.00 0.00 2.01
366 367 3.372822 GCTTGCGCCTATACTGTGTTAAA 59.627 43.478 4.18 0.00 0.00 1.52
367 368 4.142773 GCTTGCGCCTATACTGTGTTAAAA 60.143 41.667 4.18 0.00 0.00 1.52
368 369 5.618195 GCTTGCGCCTATACTGTGTTAAAAA 60.618 40.000 4.18 0.00 0.00 1.94
422 427 1.304381 ACCTTGGCCATTGATGCGT 60.304 52.632 6.09 0.00 0.00 5.24
457 462 4.323477 TTCGCCGGGTGGGACTTG 62.323 66.667 2.18 0.00 38.47 3.16
543 552 1.228094 GCTAGCTGGATCCTTGGGC 60.228 63.158 14.23 11.74 0.00 5.36
893 905 0.693049 CTCCCATAAGAATCCCCCGG 59.307 60.000 0.00 0.00 0.00 5.73
895 907 0.400594 CCCATAAGAATCCCCCGGTC 59.599 60.000 0.00 0.00 0.00 4.79
952 964 1.937223 CGGCTACAAACACACACTTGA 59.063 47.619 0.00 0.00 0.00 3.02
953 965 2.548057 CGGCTACAAACACACACTTGAT 59.452 45.455 0.00 0.00 0.00 2.57
954 966 3.363970 CGGCTACAAACACACACTTGATC 60.364 47.826 0.00 0.00 0.00 2.92
955 967 3.363970 GGCTACAAACACACACTTGATCG 60.364 47.826 0.00 0.00 0.00 3.69
956 968 3.493129 GCTACAAACACACACTTGATCGA 59.507 43.478 0.00 0.00 0.00 3.59
957 969 4.025229 GCTACAAACACACACTTGATCGAA 60.025 41.667 0.00 0.00 0.00 3.71
958 970 4.273005 ACAAACACACACTTGATCGAAC 57.727 40.909 0.00 0.00 0.00 3.95
996 1008 4.148825 ACCAGCTCCATCGCCGTC 62.149 66.667 0.00 0.00 0.00 4.79
1094 1115 4.388499 GGCGCAACCCTCGGAGAA 62.388 66.667 10.83 0.00 34.09 2.87
1100 1121 0.107654 CAACCCTCGGAGAATGGTCC 60.108 60.000 6.58 0.00 40.30 4.46
1165 1186 1.118838 CCCCAAAAACAGCACCAAGA 58.881 50.000 0.00 0.00 0.00 3.02
1167 1188 1.069049 CCCAAAAACAGCACCAAGAGG 59.931 52.381 0.00 0.00 42.21 3.69
1298 1319 1.571215 GGTAAGTTGTTCCACGCCGG 61.571 60.000 0.00 0.00 0.00 6.13
1316 1337 2.556286 GCCTGGCCAACTCTGTTAC 58.444 57.895 7.01 0.00 0.00 2.50
1320 1341 2.026822 CCTGGCCAACTCTGTTACTCAT 60.027 50.000 7.01 0.00 0.00 2.90
1321 1342 3.560025 CCTGGCCAACTCTGTTACTCATT 60.560 47.826 7.01 0.00 0.00 2.57
1349 1370 4.094294 TGCATATTACTTGTCGCTCAAACC 59.906 41.667 0.00 0.00 35.48 3.27
1420 1444 4.554683 TGAGATCCATCCTCTCAGTTCAT 58.445 43.478 0.00 0.00 43.14 2.57
1542 1566 1.201429 ACGGCAAGAAGGACCAGGAT 61.201 55.000 0.00 0.00 0.00 3.24
1545 1569 2.529632 GGCAAGAAGGACCAGGATTTT 58.470 47.619 0.00 0.00 0.00 1.82
1738 1765 0.959867 CCACATCATGTTGGACGGCA 60.960 55.000 8.58 0.00 0.00 5.69
1789 1817 2.936032 GGTGGGTCTCCAAGGCCT 60.936 66.667 0.00 0.00 46.04 5.19
1827 1855 2.452813 GCGCATCGACACGGTGAAT 61.453 57.895 16.29 2.52 40.81 2.57
2034 2065 1.754803 CCGGAGTATGTCAGCAAGGTA 59.245 52.381 0.00 0.00 0.00 3.08
2147 2178 3.411351 CAACAACGTCGCCGGGAG 61.411 66.667 2.18 0.00 38.78 4.30
2171 2202 3.071479 TCATCACCTTTGCCTCGTAAAC 58.929 45.455 0.00 0.00 0.00 2.01
2200 2231 3.117888 CCCTTATGGACATGTAAGCACCT 60.118 47.826 0.00 0.00 35.39 4.00
2270 2310 9.919348 GTACGTACACAAAAAGAAATAAGTTCA 57.081 29.630 20.67 0.00 38.86 3.18
2354 2395 2.483877 TGAATTGTGGTCGAGCAATGTC 59.516 45.455 20.46 14.18 35.72 3.06
2369 2410 7.429051 TCGAGCAATGTCGAATTATTTTTGATG 59.571 33.333 5.68 0.00 45.74 3.07
2382 2423 9.941325 AATTATTTTTGATGAAACATGGCAGTA 57.059 25.926 0.00 0.00 0.00 2.74
2383 2424 8.755696 TTATTTTTGATGAAACATGGCAGTAC 57.244 30.769 0.00 0.00 0.00 2.73
2479 2532 6.154706 ACATTTCGTGTAAGGGAATAGAGAGT 59.845 38.462 0.00 0.00 39.91 3.24
2485 2538 8.435187 TCGTGTAAGGGAATAGAGAGTAGATTA 58.565 37.037 0.00 0.00 0.00 1.75
2486 2539 9.064706 CGTGTAAGGGAATAGAGAGTAGATTAA 57.935 37.037 0.00 0.00 0.00 1.40
2499 2552 8.744652 AGAGAGTAGATTAACGGAATATGATGG 58.255 37.037 0.00 0.00 0.00 3.51
2520 2573 7.561356 TGATGGATATATTATTGAGCCTCGAGA 59.439 37.037 15.71 0.00 0.00 4.04
2521 2574 7.340122 TGGATATATTATTGAGCCTCGAGAG 57.660 40.000 15.71 5.19 0.00 3.20
2542 2595 9.691795 CGAGAGCGAGTATATATTAAGTACAAG 57.308 37.037 0.00 0.00 40.82 3.16
2567 2620 5.125739 ACTTGAAGAATACGACACCTCCTAG 59.874 44.000 0.00 0.00 0.00 3.02
2578 2631 5.163184 ACGACACCTCCTAGAGATAAGATGA 60.163 44.000 0.00 0.00 0.00 2.92
2586 2639 9.844257 CCTCCTAGAGATAAGATGAAAACAATT 57.156 33.333 0.00 0.00 0.00 2.32
2599 2652 9.430399 AGATGAAAACAATTCATATCCATTCCT 57.570 29.630 3.82 0.00 39.08 3.36
2600 2653 9.472361 GATGAAAACAATTCATATCCATTCCTG 57.528 33.333 3.82 0.00 39.08 3.86
2601 2654 8.592529 TGAAAACAATTCATATCCATTCCTGA 57.407 30.769 0.00 0.00 0.00 3.86
2602 2655 9.033711 TGAAAACAATTCATATCCATTCCTGAA 57.966 29.630 0.00 0.00 32.63 3.02
2603 2656 9.305925 GAAAACAATTCATATCCATTCCTGAAC 57.694 33.333 0.00 0.00 31.00 3.18
2604 2657 6.624352 ACAATTCATATCCATTCCTGAACG 57.376 37.500 0.00 0.00 31.00 3.95
2605 2658 5.009010 ACAATTCATATCCATTCCTGAACGC 59.991 40.000 0.00 0.00 31.00 4.84
2606 2659 3.836365 TCATATCCATTCCTGAACGCA 57.164 42.857 0.00 0.00 0.00 5.24
2607 2660 4.149511 TCATATCCATTCCTGAACGCAA 57.850 40.909 0.00 0.00 0.00 4.85
2608 2661 4.522114 TCATATCCATTCCTGAACGCAAA 58.478 39.130 0.00 0.00 0.00 3.68
2609 2662 4.946772 TCATATCCATTCCTGAACGCAAAA 59.053 37.500 0.00 0.00 0.00 2.44
2610 2663 5.417266 TCATATCCATTCCTGAACGCAAAAA 59.583 36.000 0.00 0.00 0.00 1.94
2648 2701 3.819564 TCCCGAACAATCTCTACATGG 57.180 47.619 0.00 0.00 0.00 3.66
2651 2704 4.899457 TCCCGAACAATCTCTACATGGTAT 59.101 41.667 0.00 0.00 0.00 2.73
2683 3039 0.250081 GATCGATTCTCTGTGGGCCC 60.250 60.000 17.59 17.59 0.00 5.80
2686 3042 3.329542 GATTCTCTGTGGGCCCGCA 62.330 63.158 35.26 35.26 35.02 5.69
2722 3078 2.069273 GAGTTTGAGTGATGTCCGGTG 58.931 52.381 0.00 0.00 0.00 4.94
2745 3101 0.609406 GGTTTGGGGAAGCACCTCTC 60.609 60.000 1.73 0.00 40.48 3.20
2754 3110 0.325765 AAGCACCTCTCTCTACCCCC 60.326 60.000 0.00 0.00 0.00 5.40
2806 3163 5.551305 AAGGATTTTGGGAAGTTTTCTGG 57.449 39.130 0.00 0.00 0.00 3.86
2815 3172 4.077108 GGGAAGTTTTCTGGACGGTTATT 58.923 43.478 0.00 0.00 0.00 1.40
2820 3177 7.255208 GGAAGTTTTCTGGACGGTTATTGTAAA 60.255 37.037 0.00 0.00 0.00 2.01
2827 3184 8.314143 TCTGGACGGTTATTGTAAACTTTTAG 57.686 34.615 0.00 0.00 0.00 1.85
2843 3200 5.937111 ACTTTTAGAAGCTTCCAACCAGTA 58.063 37.500 22.81 4.08 36.29 2.74
2857 3214 8.485976 TTCCAACCAGTATTTTTGTTTCTTTG 57.514 30.769 0.00 0.00 0.00 2.77
2860 3217 8.813282 CCAACCAGTATTTTTGTTTCTTTGTAC 58.187 33.333 0.00 0.00 0.00 2.90
2871 3228 4.513692 TGTTTCTTTGTACGATTGGGACAG 59.486 41.667 0.00 0.00 42.39 3.51
2878 3236 3.810941 TGTACGATTGGGACAGTTTGTTC 59.189 43.478 0.00 0.00 42.39 3.18
2882 3240 2.131776 TTGGGACAGTTTGTTCGGTT 57.868 45.000 0.00 0.00 42.39 4.44
2885 3243 3.404899 TGGGACAGTTTGTTCGGTTATC 58.595 45.455 0.00 0.00 0.00 1.75
2890 3248 6.140786 GGACAGTTTGTTCGGTTATCTTTTC 58.859 40.000 0.00 0.00 0.00 2.29
2895 3253 9.083080 CAGTTTGTTCGGTTATCTTTTCTTTTT 57.917 29.630 0.00 0.00 0.00 1.94
3002 3360 6.466885 TGTTTTTCCTTAAATTCCCGAACA 57.533 33.333 0.00 0.00 0.00 3.18
3006 3364 8.492748 GTTTTTCCTTAAATTCCCGAACATTTC 58.507 33.333 0.00 0.00 0.00 2.17
3029 3388 4.279922 CCCCCTTTCAAATACGTGACTTTT 59.720 41.667 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.522731 CTCTCTCCTGGGGCGTCG 61.523 72.222 0.00 0.00 0.00 5.12
10 11 3.151022 CCTCTCTCCTGGGGCGTC 61.151 72.222 0.00 0.00 0.00 5.19
11 12 4.787280 CCCTCTCTCCTGGGGCGT 62.787 72.222 0.00 0.00 39.76 5.68
27 28 0.930726 TCTCTTCTCCTCTCTCCCCC 59.069 60.000 0.00 0.00 0.00 5.40
28 29 1.754201 GCTCTCTTCTCCTCTCTCCCC 60.754 61.905 0.00 0.00 0.00 4.81
29 30 1.064017 TGCTCTCTTCTCCTCTCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
30 31 2.024414 GTGCTCTCTTCTCCTCTCTCC 58.976 57.143 0.00 0.00 0.00 3.71
31 32 2.024414 GGTGCTCTCTTCTCCTCTCTC 58.976 57.143 0.00 0.00 0.00 3.20
32 33 1.357420 TGGTGCTCTCTTCTCCTCTCT 59.643 52.381 0.00 0.00 0.00 3.10
33 34 1.846007 TGGTGCTCTCTTCTCCTCTC 58.154 55.000 0.00 0.00 0.00 3.20
34 35 2.387757 GATGGTGCTCTCTTCTCCTCT 58.612 52.381 0.00 0.00 0.00 3.69
35 36 1.066908 CGATGGTGCTCTCTTCTCCTC 59.933 57.143 0.00 0.00 0.00 3.71
36 37 1.110442 CGATGGTGCTCTCTTCTCCT 58.890 55.000 0.00 0.00 0.00 3.69
37 38 0.529555 GCGATGGTGCTCTCTTCTCC 60.530 60.000 0.00 0.00 0.00 3.71
38 39 0.174389 TGCGATGGTGCTCTCTTCTC 59.826 55.000 0.00 0.00 35.36 2.87
39 40 0.108424 GTGCGATGGTGCTCTCTTCT 60.108 55.000 0.00 0.00 35.36 2.85
40 41 1.086634 GGTGCGATGGTGCTCTCTTC 61.087 60.000 0.00 0.00 35.36 2.87
41 42 1.078848 GGTGCGATGGTGCTCTCTT 60.079 57.895 0.00 0.00 35.36 2.85
42 43 1.954362 GAGGTGCGATGGTGCTCTCT 61.954 60.000 0.00 0.00 34.99 3.10
43 44 1.520342 GAGGTGCGATGGTGCTCTC 60.520 63.158 0.00 0.00 35.36 3.20
44 45 2.581354 GAGGTGCGATGGTGCTCT 59.419 61.111 0.00 0.00 35.36 4.09
45 46 2.279502 TACGAGGTGCGATGGTGCTC 62.280 60.000 0.00 0.00 44.57 4.26
46 47 1.884075 TTACGAGGTGCGATGGTGCT 61.884 55.000 0.00 0.00 44.57 4.40
47 48 1.421410 CTTACGAGGTGCGATGGTGC 61.421 60.000 0.00 0.00 44.57 5.01
48 49 0.108804 ACTTACGAGGTGCGATGGTG 60.109 55.000 0.00 0.00 44.57 4.17
49 50 0.172803 GACTTACGAGGTGCGATGGT 59.827 55.000 0.00 0.00 44.57 3.55
50 51 0.456221 AGACTTACGAGGTGCGATGG 59.544 55.000 0.00 0.00 44.57 3.51
51 52 1.920574 CAAGACTTACGAGGTGCGATG 59.079 52.381 0.00 0.00 44.57 3.84
52 53 1.544691 ACAAGACTTACGAGGTGCGAT 59.455 47.619 0.00 0.00 44.57 4.58
53 54 0.956633 ACAAGACTTACGAGGTGCGA 59.043 50.000 0.00 0.00 44.57 5.10
55 56 2.150397 ACACAAGACTTACGAGGTGC 57.850 50.000 0.00 0.00 0.00 5.01
56 57 3.736252 CAGAACACAAGACTTACGAGGTG 59.264 47.826 0.00 2.05 0.00 4.00
57 58 3.635373 TCAGAACACAAGACTTACGAGGT 59.365 43.478 0.00 0.00 0.00 3.85
58 59 4.238761 TCAGAACACAAGACTTACGAGG 57.761 45.455 0.00 0.00 0.00 4.63
59 60 4.090642 GCATCAGAACACAAGACTTACGAG 59.909 45.833 0.00 0.00 0.00 4.18
60 61 3.987868 GCATCAGAACACAAGACTTACGA 59.012 43.478 0.00 0.00 0.00 3.43
61 62 3.181540 CGCATCAGAACACAAGACTTACG 60.182 47.826 0.00 0.00 0.00 3.18
62 63 3.987868 TCGCATCAGAACACAAGACTTAC 59.012 43.478 0.00 0.00 0.00 2.34
63 64 4.251543 TCGCATCAGAACACAAGACTTA 57.748 40.909 0.00 0.00 0.00 2.24
64 65 3.111853 TCGCATCAGAACACAAGACTT 57.888 42.857 0.00 0.00 0.00 3.01
65 66 2.820059 TCGCATCAGAACACAAGACT 57.180 45.000 0.00 0.00 0.00 3.24
66 67 3.433274 TGATTCGCATCAGAACACAAGAC 59.567 43.478 0.00 0.00 34.22 3.01
67 68 3.663025 TGATTCGCATCAGAACACAAGA 58.337 40.909 0.00 0.00 34.22 3.02
68 69 4.153986 GTTGATTCGCATCAGAACACAAG 58.846 43.478 0.00 0.00 40.66 3.16
69 70 3.058293 GGTTGATTCGCATCAGAACACAA 60.058 43.478 0.00 0.00 40.66 3.33
70 71 2.483877 GGTTGATTCGCATCAGAACACA 59.516 45.455 0.00 0.00 40.66 3.72
71 72 2.744202 AGGTTGATTCGCATCAGAACAC 59.256 45.455 0.00 0.00 40.66 3.32
72 73 2.743664 CAGGTTGATTCGCATCAGAACA 59.256 45.455 0.00 0.00 40.66 3.18
73 74 2.744202 ACAGGTTGATTCGCATCAGAAC 59.256 45.455 0.00 0.00 40.66 3.01
74 75 3.057969 ACAGGTTGATTCGCATCAGAA 57.942 42.857 0.00 0.00 40.66 3.02
75 76 2.768253 ACAGGTTGATTCGCATCAGA 57.232 45.000 0.00 0.00 40.66 3.27
76 77 3.525537 ACTACAGGTTGATTCGCATCAG 58.474 45.455 0.00 0.00 40.66 2.90
77 78 3.610040 ACTACAGGTTGATTCGCATCA 57.390 42.857 0.00 0.00 37.67 3.07
88 89 4.225267 CCTCTAACCATCCAACTACAGGTT 59.775 45.833 0.00 0.00 44.23 3.50
89 90 3.775316 CCTCTAACCATCCAACTACAGGT 59.225 47.826 0.00 0.00 0.00 4.00
90 91 3.134804 CCCTCTAACCATCCAACTACAGG 59.865 52.174 0.00 0.00 0.00 4.00
91 92 4.030913 TCCCTCTAACCATCCAACTACAG 58.969 47.826 0.00 0.00 0.00 2.74
92 93 3.773119 GTCCCTCTAACCATCCAACTACA 59.227 47.826 0.00 0.00 0.00 2.74
93 94 4.031611 AGTCCCTCTAACCATCCAACTAC 58.968 47.826 0.00 0.00 0.00 2.73
94 95 4.030913 CAGTCCCTCTAACCATCCAACTA 58.969 47.826 0.00 0.00 0.00 2.24
95 96 2.840651 CAGTCCCTCTAACCATCCAACT 59.159 50.000 0.00 0.00 0.00 3.16
96 97 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
97 98 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
98 99 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
99 100 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
100 101 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
101 102 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
102 103 3.484953 ATACCACAGTCCCTCTAACCA 57.515 47.619 0.00 0.00 0.00 3.67
103 104 3.134262 GGAATACCACAGTCCCTCTAACC 59.866 52.174 0.00 0.00 35.23 2.85
104 105 4.403585 GGAATACCACAGTCCCTCTAAC 57.596 50.000 0.00 0.00 35.23 2.34
118 119 0.917333 TCTGGTGGGGTGGGAATACC 60.917 60.000 0.00 0.00 40.10 2.73
119 120 0.546598 CTCTGGTGGGGTGGGAATAC 59.453 60.000 0.00 0.00 0.00 1.89
120 121 0.120377 ACTCTGGTGGGGTGGGAATA 59.880 55.000 0.00 0.00 0.00 1.75
121 122 0.776080 AACTCTGGTGGGGTGGGAAT 60.776 55.000 0.00 0.00 0.00 3.01
122 123 0.996762 AAACTCTGGTGGGGTGGGAA 60.997 55.000 0.00 0.00 0.00 3.97
123 124 0.104356 TAAACTCTGGTGGGGTGGGA 60.104 55.000 0.00 0.00 0.00 4.37
124 125 0.774908 TTAAACTCTGGTGGGGTGGG 59.225 55.000 0.00 0.00 0.00 4.61
125 126 2.668144 TTTAAACTCTGGTGGGGTGG 57.332 50.000 0.00 0.00 0.00 4.61
126 127 3.089284 GGATTTAAACTCTGGTGGGGTG 58.911 50.000 0.00 0.00 0.00 4.61
127 128 2.993863 AGGATTTAAACTCTGGTGGGGT 59.006 45.455 0.00 0.00 0.00 4.95
128 129 3.356290 CAGGATTTAAACTCTGGTGGGG 58.644 50.000 10.25 0.00 0.00 4.96
129 130 3.356290 CCAGGATTTAAACTCTGGTGGG 58.644 50.000 21.58 5.45 41.21 4.61
134 135 4.616835 GCAAGCACCAGGATTTAAACTCTG 60.617 45.833 10.87 10.87 0.00 3.35
135 136 3.507622 GCAAGCACCAGGATTTAAACTCT 59.492 43.478 0.00 0.00 0.00 3.24
136 137 3.255642 TGCAAGCACCAGGATTTAAACTC 59.744 43.478 0.00 0.00 0.00 3.01
137 138 3.230134 TGCAAGCACCAGGATTTAAACT 58.770 40.909 0.00 0.00 0.00 2.66
138 139 3.658757 TGCAAGCACCAGGATTTAAAC 57.341 42.857 0.00 0.00 0.00 2.01
139 140 4.888326 AATGCAAGCACCAGGATTTAAA 57.112 36.364 0.00 0.00 0.00 1.52
140 141 4.888326 AAATGCAAGCACCAGGATTTAA 57.112 36.364 0.00 0.00 34.63 1.52
141 142 6.543430 AATAAATGCAAGCACCAGGATTTA 57.457 33.333 0.00 0.00 40.58 1.40
142 143 5.425196 AATAAATGCAAGCACCAGGATTT 57.575 34.783 0.00 0.00 38.88 2.17
143 144 5.046448 TGAAATAAATGCAAGCACCAGGATT 60.046 36.000 0.00 0.00 0.00 3.01
144 145 4.467082 TGAAATAAATGCAAGCACCAGGAT 59.533 37.500 0.00 0.00 0.00 3.24
145 146 3.831333 TGAAATAAATGCAAGCACCAGGA 59.169 39.130 0.00 0.00 0.00 3.86
146 147 4.178540 CTGAAATAAATGCAAGCACCAGG 58.821 43.478 0.00 0.00 0.00 4.45
147 148 4.813027 ACTGAAATAAATGCAAGCACCAG 58.187 39.130 0.00 0.00 0.00 4.00
148 149 4.870123 ACTGAAATAAATGCAAGCACCA 57.130 36.364 0.00 0.00 0.00 4.17
149 150 7.832503 AAATACTGAAATAAATGCAAGCACC 57.167 32.000 0.00 0.00 0.00 5.01
150 151 8.103924 CGAAAATACTGAAATAAATGCAAGCAC 58.896 33.333 0.00 0.00 0.00 4.40
151 152 7.275341 CCGAAAATACTGAAATAAATGCAAGCA 59.725 33.333 0.00 0.00 0.00 3.91
152 153 7.612266 CCGAAAATACTGAAATAAATGCAAGC 58.388 34.615 0.00 0.00 0.00 4.01
153 154 7.513505 CGCCGAAAATACTGAAATAAATGCAAG 60.514 37.037 0.00 0.00 0.00 4.01
154 155 6.252441 CGCCGAAAATACTGAAATAAATGCAA 59.748 34.615 0.00 0.00 0.00 4.08
155 156 5.741510 CGCCGAAAATACTGAAATAAATGCA 59.258 36.000 0.00 0.00 0.00 3.96
156 157 5.968848 TCGCCGAAAATACTGAAATAAATGC 59.031 36.000 0.00 0.00 0.00 3.56
157 158 7.357532 GCATCGCCGAAAATACTGAAATAAATG 60.358 37.037 0.00 0.00 0.00 2.32
158 159 6.636850 GCATCGCCGAAAATACTGAAATAAAT 59.363 34.615 0.00 0.00 0.00 1.40
159 160 5.968848 GCATCGCCGAAAATACTGAAATAAA 59.031 36.000 0.00 0.00 0.00 1.40
160 161 5.507077 GCATCGCCGAAAATACTGAAATAA 58.493 37.500 0.00 0.00 0.00 1.40
161 162 4.318475 CGCATCGCCGAAAATACTGAAATA 60.318 41.667 0.00 0.00 0.00 1.40
162 163 3.546020 CGCATCGCCGAAAATACTGAAAT 60.546 43.478 0.00 0.00 0.00 2.17
163 164 2.222931 CGCATCGCCGAAAATACTGAAA 60.223 45.455 0.00 0.00 0.00 2.69
164 165 1.326245 CGCATCGCCGAAAATACTGAA 59.674 47.619 0.00 0.00 0.00 3.02
165 166 0.927537 CGCATCGCCGAAAATACTGA 59.072 50.000 0.00 0.00 0.00 3.41
166 167 3.420968 CGCATCGCCGAAAATACTG 57.579 52.632 0.00 0.00 0.00 2.74
178 179 0.575859 CTCTCACTGAATGCGCATCG 59.424 55.000 25.53 17.09 0.00 3.84
179 180 0.935898 CCTCTCACTGAATGCGCATC 59.064 55.000 25.53 17.12 0.00 3.91
180 181 0.538584 TCCTCTCACTGAATGCGCAT 59.461 50.000 19.28 19.28 0.00 4.73
181 182 0.108472 CTCCTCTCACTGAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
182 183 0.174389 TCTCCTCTCACTGAATGCGC 59.826 55.000 0.00 0.00 0.00 6.09
183 184 1.796982 CGTCTCCTCTCACTGAATGCG 60.797 57.143 0.00 0.00 0.00 4.73
184 185 1.203523 ACGTCTCCTCTCACTGAATGC 59.796 52.381 0.00 0.00 0.00 3.56
185 186 3.506810 GAACGTCTCCTCTCACTGAATG 58.493 50.000 0.00 0.00 0.00 2.67
186 187 2.494073 GGAACGTCTCCTCTCACTGAAT 59.506 50.000 8.87 0.00 41.61 2.57
187 188 1.887198 GGAACGTCTCCTCTCACTGAA 59.113 52.381 8.87 0.00 41.61 3.02
188 189 1.535833 GGAACGTCTCCTCTCACTGA 58.464 55.000 8.87 0.00 41.61 3.41
189 190 0.528470 GGGAACGTCTCCTCTCACTG 59.472 60.000 13.94 0.00 44.68 3.66
190 191 2.964343 GGGAACGTCTCCTCTCACT 58.036 57.895 13.94 0.00 44.68 3.41
209 210 1.596464 CGTAGGCACCTCGTTATCGAC 60.596 57.143 0.00 0.00 41.35 4.20
210 211 0.659427 CGTAGGCACCTCGTTATCGA 59.341 55.000 0.00 0.00 44.12 3.59
211 212 0.659427 TCGTAGGCACCTCGTTATCG 59.341 55.000 0.00 0.00 38.55 2.92
212 213 4.023365 AGTTATCGTAGGCACCTCGTTATC 60.023 45.833 0.00 0.00 0.00 1.75
213 214 3.887716 AGTTATCGTAGGCACCTCGTTAT 59.112 43.478 0.00 0.00 0.00 1.89
214 215 3.282021 AGTTATCGTAGGCACCTCGTTA 58.718 45.455 0.00 0.00 0.00 3.18
215 216 2.097825 AGTTATCGTAGGCACCTCGTT 58.902 47.619 0.00 0.00 0.00 3.85
216 217 1.760192 AGTTATCGTAGGCACCTCGT 58.240 50.000 0.00 0.00 0.00 4.18
217 218 2.728922 GAAGTTATCGTAGGCACCTCG 58.271 52.381 0.00 0.00 0.00 4.63
218 219 2.728922 CGAAGTTATCGTAGGCACCTC 58.271 52.381 0.00 0.00 46.52 3.85
219 220 2.865343 CGAAGTTATCGTAGGCACCT 57.135 50.000 0.00 0.00 46.52 4.00
234 235 9.573102 CGACATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
235 236 8.547894 CCGACATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
236 237 7.307160 GCCGACATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
237 238 6.792250 GCCGACATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
238 239 7.865707 AGCCGACATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
239 240 7.714813 TGAGCCGACATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
240 241 6.543465 TGAGCCGACATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
241 242 6.057533 TGAGCCGACATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
242 243 5.614308 TGAGCCGACATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
243 244 5.022282 TGAGCCGACATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
244 245 4.100035 ACTGAGCCGACATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
245 246 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
246 247 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
247 248 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
248 249 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
249 250 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
250 251 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
251 252 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
252 253 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
253 254 2.688446 TCGAAAGACTGAGCCGACATAT 59.312 45.455 0.00 0.00 33.31 1.78
254 255 2.089201 TCGAAAGACTGAGCCGACATA 58.911 47.619 0.00 0.00 33.31 2.29
255 256 0.888619 TCGAAAGACTGAGCCGACAT 59.111 50.000 0.00 0.00 33.31 3.06
256 257 0.671796 TTCGAAAGACTGAGCCGACA 59.328 50.000 0.00 0.00 41.84 4.35
257 258 1.341606 CTTCGAAAGACTGAGCCGAC 58.658 55.000 0.00 0.00 41.84 4.79
258 259 0.243907 CCTTCGAAAGACTGAGCCGA 59.756 55.000 0.00 0.00 41.84 5.54
259 260 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.000 0.00 0.00 41.84 5.52
260 261 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
261 262 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
262 263 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
263 264 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
264 265 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
265 266 3.118956 CCTATGAGCACCTTCGAAAGACT 60.119 47.826 0.00 0.00 41.84 3.24
266 267 3.190874 CCTATGAGCACCTTCGAAAGAC 58.809 50.000 0.00 0.00 41.84 3.01
267 268 2.168521 CCCTATGAGCACCTTCGAAAGA 59.831 50.000 0.00 0.00 39.20 2.52
268 269 2.555199 CCCTATGAGCACCTTCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
269 270 1.209504 CCCCTATGAGCACCTTCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
270 271 0.830648 CCCCTATGAGCACCTTCGAA 59.169 55.000 0.00 0.00 0.00 3.71
271 272 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
272 273 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
273 274 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
274 275 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
275 276 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
276 277 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
277 278 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
278 279 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
279 280 1.969208 GTACACCCTACCCCTATGAGC 59.031 57.143 0.00 0.00 0.00 4.26
280 281 2.236766 CGTACACCCTACCCCTATGAG 58.763 57.143 0.00 0.00 0.00 2.90
281 282 1.570501 ACGTACACCCTACCCCTATGA 59.429 52.381 0.00 0.00 0.00 2.15
282 283 1.684983 CACGTACACCCTACCCCTATG 59.315 57.143 0.00 0.00 0.00 2.23
283 284 1.288932 ACACGTACACCCTACCCCTAT 59.711 52.381 0.00 0.00 0.00 2.57
284 285 0.704076 ACACGTACACCCTACCCCTA 59.296 55.000 0.00 0.00 0.00 3.53
285 286 0.901580 CACACGTACACCCTACCCCT 60.902 60.000 0.00 0.00 0.00 4.79
286 287 1.187567 ACACACGTACACCCTACCCC 61.188 60.000 0.00 0.00 0.00 4.95
287 288 0.037975 CACACACGTACACCCTACCC 60.038 60.000 0.00 0.00 0.00 3.69
288 289 0.668401 GCACACACGTACACCCTACC 60.668 60.000 0.00 0.00 0.00 3.18
289 290 1.005294 CGCACACACGTACACCCTAC 61.005 60.000 0.00 0.00 0.00 3.18
290 291 1.286570 CGCACACACGTACACCCTA 59.713 57.895 0.00 0.00 0.00 3.53
291 292 2.028484 CGCACACACGTACACCCT 59.972 61.111 0.00 0.00 0.00 4.34
292 293 2.279650 ACGCACACACGTACACCC 60.280 61.111 0.00 0.00 46.19 4.61
299 300 0.669318 ACCCTATGAACGCACACACG 60.669 55.000 0.00 0.00 39.50 4.49
300 301 1.196808 CAACCCTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
301 302 1.070914 TCAACCCTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
302 303 1.732259 CTCAACCCTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
303 304 1.346395 ACTCAACCCTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
304 305 1.732259 CACTCAACCCTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
305 306 1.346395 ACACTCAACCCTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
306 307 2.094762 ACACTCAACCCTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
307 308 3.555956 GCATACACTCAACCCTATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
308 309 3.555956 CGCATACACTCAACCCTATGAAC 59.444 47.826 0.00 0.00 0.00 3.18
309 310 3.792401 CGCATACACTCAACCCTATGAA 58.208 45.455 0.00 0.00 0.00 2.57
310 311 2.483013 GCGCATACACTCAACCCTATGA 60.483 50.000 0.30 0.00 0.00 2.15
311 312 1.867233 GCGCATACACTCAACCCTATG 59.133 52.381 0.30 0.00 0.00 2.23
312 313 1.538204 CGCGCATACACTCAACCCTAT 60.538 52.381 8.75 0.00 0.00 2.57
313 314 0.179121 CGCGCATACACTCAACCCTA 60.179 55.000 8.75 0.00 0.00 3.53
314 315 1.447838 CGCGCATACACTCAACCCT 60.448 57.895 8.75 0.00 0.00 4.34
315 316 1.740296 ACGCGCATACACTCAACCC 60.740 57.895 5.73 0.00 0.00 4.11
316 317 1.289109 ACACGCGCATACACTCAACC 61.289 55.000 5.73 0.00 0.00 3.77
317 318 1.342555 TACACGCGCATACACTCAAC 58.657 50.000 5.73 0.00 0.00 3.18
318 319 2.287393 ATACACGCGCATACACTCAA 57.713 45.000 5.73 0.00 0.00 3.02
319 320 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
320 321 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
321 322 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
322 323 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
323 324 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
324 325 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
325 326 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
326 327 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
327 328 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
331 332 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
345 346 5.539582 TTTTAACACAGTATAGGCGCAAG 57.460 39.130 10.83 0.00 43.44 4.01
346 347 5.943706 TTTTTAACACAGTATAGGCGCAA 57.056 34.783 10.83 0.00 0.00 4.85
366 367 5.300286 CCTCCATCAGAACACAAGACTTTTT 59.700 40.000 0.00 0.00 0.00 1.94
367 368 4.823989 CCTCCATCAGAACACAAGACTTTT 59.176 41.667 0.00 0.00 0.00 2.27
368 369 4.103153 TCCTCCATCAGAACACAAGACTTT 59.897 41.667 0.00 0.00 0.00 2.66
422 427 4.508128 GGAACTCGATCGGCCGCA 62.508 66.667 23.51 10.36 0.00 5.69
457 462 3.123621 CAGTTTATCACTTCCGTCACTGC 59.876 47.826 0.00 0.00 30.92 4.40
459 464 3.323979 ACCAGTTTATCACTTCCGTCACT 59.676 43.478 0.00 0.00 30.92 3.41
543 552 2.773487 TGGACCAAAGTTACACATCGG 58.227 47.619 0.00 0.00 0.00 4.18
893 905 4.659874 CGTTTGTGTGGCGCCGAC 62.660 66.667 23.90 21.11 0.00 4.79
952 964 9.742570 GAAGAGCTACCTTCTTCGATGTTCGAT 62.743 44.444 7.70 0.00 40.40 3.59
953 965 8.538492 GAAGAGCTACCTTCTTCGATGTTCGA 62.538 46.154 7.70 0.00 41.56 3.71
954 966 3.109619 GAGCTACCTTCTTCGATGTTCG 58.890 50.000 0.00 0.00 42.10 3.95
955 967 4.379339 AGAGCTACCTTCTTCGATGTTC 57.621 45.455 0.00 0.00 0.00 3.18
956 968 4.749976 GAAGAGCTACCTTCTTCGATGTT 58.250 43.478 7.70 0.00 40.62 2.71
957 969 4.379339 GAAGAGCTACCTTCTTCGATGT 57.621 45.455 7.70 0.00 40.62 3.06
1165 1186 4.065281 GGTGACCGCGTACAGCCT 62.065 66.667 16.96 0.00 44.76 4.58
1167 1188 2.809601 CAGGTGACCGCGTACAGC 60.810 66.667 19.08 19.08 43.95 4.40
1206 1227 4.980805 GGGCAGGACACGACGCAA 62.981 66.667 0.00 0.00 0.00 4.85
1298 1319 0.036875 AGTAACAGAGTTGGCCAGGC 59.963 55.000 5.11 1.26 0.00 4.85
1303 1324 2.673368 CGGAATGAGTAACAGAGTTGGC 59.327 50.000 0.00 0.00 0.00 4.52
1304 1325 4.188247 TCGGAATGAGTAACAGAGTTGG 57.812 45.455 0.00 0.00 0.00 3.77
1316 1337 6.400409 CGACAAGTAATATGCATCGGAATGAG 60.400 42.308 0.19 0.00 34.61 2.90
1320 1341 3.493129 GCGACAAGTAATATGCATCGGAA 59.507 43.478 0.19 0.00 0.00 4.30
1321 1342 3.057019 GCGACAAGTAATATGCATCGGA 58.943 45.455 0.19 0.00 0.00 4.55
1349 1370 4.576873 AGCACTCCCGATGTAGATATATCG 59.423 45.833 10.86 10.86 43.84 2.92
1410 1434 3.181490 ACGCGTTAGCATATGAACTGAGA 60.181 43.478 5.58 0.00 45.49 3.27
1411 1435 3.116300 ACGCGTTAGCATATGAACTGAG 58.884 45.455 5.58 4.59 45.49 3.35
1420 1444 1.364721 ACATGCAACGCGTTAGCATA 58.635 45.000 37.21 24.19 46.39 3.14
1542 1566 1.438651 CGTCGGAGAGGATGCAAAAA 58.561 50.000 0.00 0.00 46.48 1.94
1738 1765 1.982395 TCTCCACATCGACGGCCTT 60.982 57.895 0.00 0.00 0.00 4.35
1789 1817 2.144078 TGACGGACAAGGAGGGCAA 61.144 57.895 0.00 0.00 0.00 4.52
1827 1855 3.315142 GAGCTCCACCATGACGGCA 62.315 63.158 0.87 0.00 39.03 5.69
2034 2065 1.094073 GCATCTTGGCGCTGATGTCT 61.094 55.000 26.17 3.30 41.33 3.41
2146 2177 1.609061 CGAGGCAAAGGTGATGACACT 60.609 52.381 0.00 0.00 45.32 3.55
2147 2178 0.798776 CGAGGCAAAGGTGATGACAC 59.201 55.000 0.00 0.00 45.27 3.67
2152 2183 2.433436 GGTTTACGAGGCAAAGGTGAT 58.567 47.619 0.00 0.00 0.00 3.06
2171 2202 0.179056 ATGTCCATAAGGGCGAACGG 60.179 55.000 0.00 0.00 44.71 4.44
2214 2245 6.341408 ACCCCAATTACTGACTTATTCCAT 57.659 37.500 0.00 0.00 0.00 3.41
2215 2246 5.789574 ACCCCAATTACTGACTTATTCCA 57.210 39.130 0.00 0.00 0.00 3.53
2270 2310 0.395312 ACCACCGGTCGATGTTTTCT 59.605 50.000 2.59 0.00 0.00 2.52
2319 2359 6.165577 ACCACAATTCAATTGAAATACAGCC 58.834 36.000 23.91 0.00 42.83 4.85
2354 2395 7.961855 TGCCATGTTTCATCAAAAATAATTCG 58.038 30.769 0.00 0.00 0.00 3.34
2360 2401 5.863397 CGTACTGCCATGTTTCATCAAAAAT 59.137 36.000 0.00 0.00 0.00 1.82
2369 2410 3.323243 ACTACACGTACTGCCATGTTTC 58.677 45.455 0.00 0.00 0.00 2.78
2382 2423 1.310933 CGCCCCTGAGTACTACACGT 61.311 60.000 0.00 0.00 0.00 4.49
2383 2424 1.432251 CGCCCCTGAGTACTACACG 59.568 63.158 0.00 0.00 0.00 4.49
2408 2461 9.818270 ATTCATCTGAATACCCATGAATTATGT 57.182 29.630 3.62 0.00 41.23 2.29
2438 2491 8.655092 ACACGAAATGTTTTTGCCATAATAATG 58.345 29.630 0.00 0.00 38.98 1.90
2445 2498 4.987912 CCTTACACGAAATGTTTTTGCCAT 59.012 37.500 0.00 0.00 43.19 4.40
2499 2552 5.912396 CGCTCTCGAGGCTCAATAATATATC 59.088 44.000 15.95 0.00 38.10 1.63
2502 2555 3.759086 TCGCTCTCGAGGCTCAATAATAT 59.241 43.478 15.95 0.00 40.21 1.28
2542 2595 4.082136 AGGAGGTGTCGTATTCTTCAAGTC 60.082 45.833 0.00 0.00 0.00 3.01
2548 2601 5.113446 TCTCTAGGAGGTGTCGTATTCTT 57.887 43.478 0.00 0.00 0.00 2.52
2551 2604 6.839454 TCTTATCTCTAGGAGGTGTCGTATT 58.161 40.000 0.00 0.00 0.00 1.89
2552 2605 6.436738 TCTTATCTCTAGGAGGTGTCGTAT 57.563 41.667 0.00 0.00 0.00 3.06
2578 2631 7.975616 CGTTCAGGAATGGATATGAATTGTTTT 59.024 33.333 0.00 0.00 34.45 2.43
2586 2639 3.836365 TGCGTTCAGGAATGGATATGA 57.164 42.857 3.63 0.00 0.00 2.15
2588 2641 5.913137 TTTTTGCGTTCAGGAATGGATAT 57.087 34.783 3.63 0.00 0.00 1.63
2610 2663 9.627123 TGTTCGGGAATAGATATGATTTTTCTT 57.373 29.630 0.00 0.00 0.00 2.52
2611 2664 9.627123 TTGTTCGGGAATAGATATGATTTTTCT 57.373 29.630 0.00 0.00 0.00 2.52
2614 2667 9.799106 AGATTGTTCGGGAATAGATATGATTTT 57.201 29.630 0.00 0.00 0.00 1.82
2615 2668 9.442047 GAGATTGTTCGGGAATAGATATGATTT 57.558 33.333 0.00 0.00 0.00 2.17
2616 2669 8.820831 AGAGATTGTTCGGGAATAGATATGATT 58.179 33.333 0.00 0.00 0.00 2.57
2617 2670 8.372877 AGAGATTGTTCGGGAATAGATATGAT 57.627 34.615 0.00 0.00 0.00 2.45
2618 2671 7.782897 AGAGATTGTTCGGGAATAGATATGA 57.217 36.000 0.00 0.00 0.00 2.15
2619 2672 8.523658 TGTAGAGATTGTTCGGGAATAGATATG 58.476 37.037 0.00 0.00 0.00 1.78
2620 2673 8.651589 TGTAGAGATTGTTCGGGAATAGATAT 57.348 34.615 0.00 0.00 0.00 1.63
2633 2686 9.036980 GGGAGTATATACCATGTAGAGATTGTT 57.963 37.037 9.32 0.00 0.00 2.83
2634 2687 7.620094 GGGGAGTATATACCATGTAGAGATTGT 59.380 40.741 9.32 0.00 0.00 2.71
2648 2701 4.148128 TCGATCGAGGGGGAGTATATAC 57.852 50.000 15.15 4.60 0.00 1.47
2651 2704 3.266254 AGAATCGATCGAGGGGGAGTATA 59.734 47.826 23.84 0.00 0.00 1.47
2683 3039 8.963130 TCAAACTCAAATACTTTTAAATGTGCG 58.037 29.630 15.08 3.42 0.00 5.34
2713 3069 0.250727 CCAAACCAGTCACCGGACAT 60.251 55.000 9.46 0.00 46.80 3.06
2714 3070 1.147376 CCAAACCAGTCACCGGACA 59.853 57.895 9.46 0.00 46.80 4.02
2717 3073 2.282180 CCCCAAACCAGTCACCGG 60.282 66.667 0.00 0.00 0.00 5.28
2722 3078 1.179174 GGTGCTTCCCCAAACCAGTC 61.179 60.000 0.00 0.00 32.69 3.51
2786 3143 4.558697 CGTCCAGAAAACTTCCCAAAATCC 60.559 45.833 0.00 0.00 0.00 3.01
2788 3145 3.320826 CCGTCCAGAAAACTTCCCAAAAT 59.679 43.478 0.00 0.00 0.00 1.82
2799 3156 7.571080 AAGTTTACAATAACCGTCCAGAAAA 57.429 32.000 0.00 0.00 0.00 2.29
2802 3159 8.149647 TCTAAAAGTTTACAATAACCGTCCAGA 58.850 33.333 0.00 0.00 0.00 3.86
2805 3162 7.747799 GCTTCTAAAAGTTTACAATAACCGTCC 59.252 37.037 0.00 0.00 34.79 4.79
2806 3163 8.501580 AGCTTCTAAAAGTTTACAATAACCGTC 58.498 33.333 0.00 0.00 34.79 4.79
2815 3172 6.603997 TGGTTGGAAGCTTCTAAAAGTTTACA 59.396 34.615 24.74 12.89 42.71 2.41
2820 3177 4.793201 ACTGGTTGGAAGCTTCTAAAAGT 58.207 39.130 24.74 24.71 34.79 2.66
2827 3184 5.842907 ACAAAAATACTGGTTGGAAGCTTC 58.157 37.500 18.54 18.54 0.00 3.86
2843 3200 7.436970 GTCCCAATCGTACAAAGAAACAAAAAT 59.563 33.333 0.00 0.00 0.00 1.82
2857 3214 3.120786 CGAACAAACTGTCCCAATCGTAC 60.121 47.826 0.00 0.00 0.00 3.67
2860 3217 1.196808 CCGAACAAACTGTCCCAATCG 59.803 52.381 0.00 0.00 0.00 3.34
2979 3337 6.466885 TGTTCGGGAATTTAAGGAAAAACA 57.533 33.333 0.00 0.00 0.00 2.83
2980 3338 7.956420 AATGTTCGGGAATTTAAGGAAAAAC 57.044 32.000 0.00 0.00 0.00 2.43
2981 3339 7.658167 GGAAATGTTCGGGAATTTAAGGAAAAA 59.342 33.333 0.00 0.00 0.00 1.94
2997 3355 4.535526 ATTTGAAAGGGGGAAATGTTCG 57.464 40.909 0.00 0.00 0.00 3.95
3002 3360 4.461431 GTCACGTATTTGAAAGGGGGAAAT 59.539 41.667 0.00 0.00 0.00 2.17
3006 3364 3.067684 AGTCACGTATTTGAAAGGGGG 57.932 47.619 0.00 0.00 0.00 5.40
3123 3482 9.480053 GTGGAAGAAAATCATGAATTTGAAAGA 57.520 29.630 13.42 0.00 37.64 2.52
3124 3483 9.263538 TGTGGAAGAAAATCATGAATTTGAAAG 57.736 29.630 13.42 0.00 37.64 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.