Multiple sequence alignment - TraesCS3B01G340400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G340400 chr3B 100.000 3209 0 0 1 3209 547060223 547057015 0.000000e+00 5927
1 TraesCS3B01G340400 chr3D 94.134 3188 101 31 60 3209 419882601 419879462 0.000000e+00 4772
2 TraesCS3B01G340400 chr3A 92.177 3170 128 47 103 3209 531446286 531449398 0.000000e+00 4370
3 TraesCS3B01G340400 chr1A 75.626 1198 215 55 1076 2212 518046278 518047459 1.020000e-144 523
4 TraesCS3B01G340400 chr1D 75.395 1203 215 54 1076 2212 422289979 422291166 1.030000e-139 507
5 TraesCS3B01G340400 chr1B 77.778 459 61 31 1076 1494 571164574 571165031 8.890000e-61 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G340400 chr3B 547057015 547060223 3208 True 5927 5927 100.000 1 3209 1 chr3B.!!$R1 3208
1 TraesCS3B01G340400 chr3D 419879462 419882601 3139 True 4772 4772 94.134 60 3209 1 chr3D.!!$R1 3149
2 TraesCS3B01G340400 chr3A 531446286 531449398 3112 False 4370 4370 92.177 103 3209 1 chr3A.!!$F1 3106
3 TraesCS3B01G340400 chr1A 518046278 518047459 1181 False 523 523 75.626 1076 2212 1 chr1A.!!$F1 1136
4 TraesCS3B01G340400 chr1D 422289979 422291166 1187 False 507 507 75.395 1076 2212 1 chr1D.!!$F1 1136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 577 0.25361 CATTGGCATTGGCATTGGGT 59.746 50.0 21.09 3.04 43.71 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2598 0.033504 ACAGCATATACGCTTCCGGG 59.966 55.0 0.0 0.0 41.38 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.131376 TCGATCTCCCCGTACGAC 57.869 61.111 18.76 0.00 0.00 4.34
18 19 1.524621 TCGATCTCCCCGTACGACC 60.525 63.158 18.76 0.00 0.00 4.79
19 20 2.890109 CGATCTCCCCGTACGACCG 61.890 68.421 18.76 3.21 0.00 4.79
20 21 1.524621 GATCTCCCCGTACGACCGA 60.525 63.158 18.76 7.74 0.00 4.69
21 22 1.780025 GATCTCCCCGTACGACCGAC 61.780 65.000 18.76 0.00 0.00 4.79
22 23 3.512516 CTCCCCGTACGACCGACC 61.513 72.222 18.76 0.00 0.00 4.79
23 24 4.343323 TCCCCGTACGACCGACCA 62.343 66.667 18.76 0.00 0.00 4.02
24 25 3.818787 CCCCGTACGACCGACCAG 61.819 72.222 18.76 0.00 0.00 4.00
25 26 4.487412 CCCGTACGACCGACCAGC 62.487 72.222 18.76 0.00 0.00 4.85
26 27 4.487412 CCGTACGACCGACCAGCC 62.487 72.222 18.76 0.00 0.00 4.85
27 28 3.740397 CGTACGACCGACCAGCCA 61.740 66.667 10.44 0.00 0.00 4.75
28 29 2.126189 GTACGACCGACCAGCCAC 60.126 66.667 0.00 0.00 0.00 5.01
29 30 3.740397 TACGACCGACCAGCCACG 61.740 66.667 0.00 0.00 0.00 4.94
54 55 3.720601 CCAGCTAGCCCAGGCACA 61.721 66.667 12.13 0.00 44.88 4.57
55 56 2.124819 CAGCTAGCCCAGGCACAG 60.125 66.667 12.13 8.59 44.88 3.66
56 57 2.608988 AGCTAGCCCAGGCACAGT 60.609 61.111 12.13 0.00 44.88 3.55
57 58 1.306141 AGCTAGCCCAGGCACAGTA 60.306 57.895 12.13 0.00 44.88 2.74
58 59 0.909610 AGCTAGCCCAGGCACAGTAA 60.910 55.000 12.13 0.00 44.88 2.24
59 60 0.744771 GCTAGCCCAGGCACAGTAAC 60.745 60.000 12.03 0.00 44.88 2.50
60 61 0.613260 CTAGCCCAGGCACAGTAACA 59.387 55.000 12.03 0.00 44.88 2.41
61 62 0.613260 TAGCCCAGGCACAGTAACAG 59.387 55.000 12.03 0.00 44.88 3.16
62 63 1.675641 GCCCAGGCACAGTAACAGG 60.676 63.158 3.12 0.00 41.49 4.00
63 64 1.675641 CCCAGGCACAGTAACAGGC 60.676 63.158 0.00 0.00 0.00 4.85
275 277 7.915508 TCGCTTTGTTTAATCGTCATTATCAT 58.084 30.769 0.00 0.00 0.00 2.45
329 331 0.821711 CGCCCCAAAACACCTGAGAA 60.822 55.000 0.00 0.00 0.00 2.87
330 332 1.632589 GCCCCAAAACACCTGAGAAT 58.367 50.000 0.00 0.00 0.00 2.40
331 333 1.273327 GCCCCAAAACACCTGAGAATG 59.727 52.381 0.00 0.00 0.00 2.67
332 334 2.875296 CCCCAAAACACCTGAGAATGA 58.125 47.619 0.00 0.00 0.00 2.57
334 336 3.490348 CCCAAAACACCTGAGAATGAGT 58.510 45.455 0.00 0.00 0.00 3.41
335 337 3.891366 CCCAAAACACCTGAGAATGAGTT 59.109 43.478 0.00 0.00 0.00 3.01
337 339 5.711976 CCCAAAACACCTGAGAATGAGTTAT 59.288 40.000 0.00 0.00 0.00 1.89
339 341 7.393234 CCCAAAACACCTGAGAATGAGTTATTA 59.607 37.037 0.00 0.00 0.00 0.98
340 342 8.237267 CCAAAACACCTGAGAATGAGTTATTAC 58.763 37.037 0.00 0.00 0.00 1.89
342 344 5.661458 ACACCTGAGAATGAGTTATTACGG 58.339 41.667 0.00 0.00 0.00 4.02
383 390 1.444917 CGGTCGATCTGATCCGTCCA 61.445 60.000 11.84 0.00 36.87 4.02
387 394 3.005472 GGTCGATCTGATCCGTCCATTTA 59.995 47.826 11.84 0.00 34.87 1.40
559 577 0.253610 CATTGGCATTGGCATTGGGT 59.746 50.000 21.09 3.04 43.71 4.51
603 645 2.112297 GACGGGTTGAGCCACCAA 59.888 61.111 0.00 0.00 38.79 3.67
604 646 1.527380 GACGGGTTGAGCCACCAAA 60.527 57.895 0.00 0.00 38.79 3.28
606 648 0.893727 ACGGGTTGAGCCACCAAATC 60.894 55.000 0.00 0.00 38.79 2.17
608 650 1.339631 CGGGTTGAGCCACCAAATCTA 60.340 52.381 0.00 0.00 38.79 1.98
610 652 2.952310 GGGTTGAGCCACCAAATCTATC 59.048 50.000 0.09 0.00 38.79 2.08
611 653 3.372025 GGGTTGAGCCACCAAATCTATCT 60.372 47.826 0.09 0.00 38.79 1.98
612 654 4.141482 GGGTTGAGCCACCAAATCTATCTA 60.141 45.833 0.09 0.00 38.79 1.98
613 655 5.456763 GGGTTGAGCCACCAAATCTATCTAT 60.457 44.000 0.09 0.00 38.79 1.98
614 656 5.703130 GGTTGAGCCACCAAATCTATCTATC 59.297 44.000 0.00 0.00 36.73 2.08
615 657 6.465035 GGTTGAGCCACCAAATCTATCTATCT 60.465 42.308 0.00 0.00 36.73 1.98
616 658 6.352016 TGAGCCACCAAATCTATCTATCTC 57.648 41.667 0.00 0.00 0.00 2.75
617 659 5.247110 TGAGCCACCAAATCTATCTATCTCC 59.753 44.000 0.00 0.00 0.00 3.71
618 660 5.158141 AGCCACCAAATCTATCTATCTCCA 58.842 41.667 0.00 0.00 0.00 3.86
619 661 5.789575 AGCCACCAAATCTATCTATCTCCAT 59.210 40.000 0.00 0.00 0.00 3.41
811 870 3.415087 CCAAGGAGAGGGCAGGGG 61.415 72.222 0.00 0.00 0.00 4.79
812 871 3.415087 CAAGGAGAGGGCAGGGGG 61.415 72.222 0.00 0.00 0.00 5.40
813 872 3.626596 AAGGAGAGGGCAGGGGGA 61.627 66.667 0.00 0.00 0.00 4.81
839 900 2.499693 CAACCCAAAACCAAGACCAAGT 59.500 45.455 0.00 0.00 0.00 3.16
951 1013 1.939769 GCTGACTCACTCCCGTCTCC 61.940 65.000 0.00 0.00 0.00 3.71
1119 1189 3.755628 GCGGTGCTCCTGGACGTA 61.756 66.667 2.85 0.00 35.23 3.57
1677 1814 3.289525 GCAGACAGCGAGGGTACT 58.710 61.111 0.00 0.00 0.00 2.73
1722 1871 0.753111 AAGAATTGGCGAGCATCCCC 60.753 55.000 0.00 0.00 0.00 4.81
1899 2048 2.899900 TGTGCTCACTATGGACAAGAGT 59.100 45.455 1.47 0.00 33.03 3.24
2219 2368 2.594321 CTCGTTCTGAGCTTCACAGAG 58.406 52.381 4.04 0.00 43.67 3.35
2220 2369 1.270826 TCGTTCTGAGCTTCACAGAGG 59.729 52.381 4.04 1.98 43.67 3.69
2276 2425 8.132995 CACATGATTATTGCACATCATTACTGT 58.867 33.333 11.03 6.65 37.93 3.55
2281 2430 9.740239 GATTATTGCACATCATTACTGTCAAAT 57.260 29.630 0.00 0.00 0.00 2.32
2285 2434 8.914328 TTGCACATCATTACTGTCAAATATTG 57.086 30.769 0.00 0.00 0.00 1.90
2286 2435 8.278729 TGCACATCATTACTGTCAAATATTGA 57.721 30.769 0.00 0.00 37.33 2.57
2287 2436 8.905850 TGCACATCATTACTGTCAAATATTGAT 58.094 29.630 0.00 0.00 42.47 2.57
2305 2471 8.954950 ATATTGATAGTAGCATTGCAGTATCC 57.045 34.615 20.79 11.48 29.56 2.59
2432 2598 4.261801 TCTCTAAAGTTTGCCACCTATGC 58.738 43.478 0.00 0.00 0.00 3.14
2519 2685 9.562583 CAAAATTATTGATTTTTGGCTCATTGG 57.437 29.630 0.00 0.00 43.65 3.16
2520 2686 8.866970 AAATTATTGATTTTTGGCTCATTGGT 57.133 26.923 0.00 0.00 34.27 3.67
2529 2695 5.612725 TTTGGCTCATTGGTTTTCTTCTT 57.387 34.783 0.00 0.00 0.00 2.52
2539 2705 3.064820 TGGTTTTCTTCTTGTTCGTGAGC 59.935 43.478 0.00 0.00 0.00 4.26
2566 2732 1.470051 AACACGTGGCAAGGTTTTCT 58.530 45.000 21.57 0.00 0.00 2.52
2606 2772 1.683319 GGGTCCCAATTCTGAAGGCTC 60.683 57.143 1.78 0.00 0.00 4.70
2609 2775 0.035056 CCCAATTCTGAAGGCTCGGT 60.035 55.000 0.00 0.00 0.00 4.69
2632 2798 7.974501 CGGTAGTGAGTTATTGAATCTAACACT 59.025 37.037 0.00 0.00 32.63 3.55
3034 3201 3.154710 CCATGCACTGATATGGCTCATT 58.845 45.455 0.00 0.00 37.61 2.57
3038 3205 2.603892 GCACTGATATGGCTCATTTGCG 60.604 50.000 0.00 0.00 29.55 4.85
3079 3246 8.814038 AAGGCACAATATATGAGTTCTTTTCT 57.186 30.769 0.00 0.00 0.00 2.52
3179 3349 0.590732 GCTGCGATGCAATTTCTCGG 60.591 55.000 8.58 0.00 38.41 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.524621 GGTCGTACGGGGAGATCGA 60.525 63.158 16.52 0.00 0.00 3.59
1 2 2.890109 CGGTCGTACGGGGAGATCG 61.890 68.421 16.52 3.58 32.07 3.69
3 4 1.821332 GTCGGTCGTACGGGGAGAT 60.821 63.158 16.52 0.00 0.00 2.75
4 5 2.436646 GTCGGTCGTACGGGGAGA 60.437 66.667 16.52 7.43 0.00 3.71
6 7 4.343323 TGGTCGGTCGTACGGGGA 62.343 66.667 16.52 7.55 0.00 4.81
7 8 3.818787 CTGGTCGGTCGTACGGGG 61.819 72.222 16.52 5.12 0.00 5.73
8 9 4.487412 GCTGGTCGGTCGTACGGG 62.487 72.222 16.52 5.50 0.00 5.28
9 10 4.487412 GGCTGGTCGGTCGTACGG 62.487 72.222 16.52 0.00 0.00 4.02
10 11 3.740397 TGGCTGGTCGGTCGTACG 61.740 66.667 9.53 9.53 0.00 3.67
11 12 2.126189 GTGGCTGGTCGGTCGTAC 60.126 66.667 0.00 0.00 0.00 3.67
12 13 3.740397 CGTGGCTGGTCGGTCGTA 61.740 66.667 0.00 0.00 0.00 3.43
37 38 3.694058 CTGTGCCTGGGCTAGCTGG 62.694 68.421 15.72 15.01 42.51 4.85
38 39 1.617018 TACTGTGCCTGGGCTAGCTG 61.617 60.000 15.72 5.36 42.51 4.24
39 40 0.909610 TTACTGTGCCTGGGCTAGCT 60.910 55.000 15.72 0.00 42.51 3.32
40 41 0.744771 GTTACTGTGCCTGGGCTAGC 60.745 60.000 6.04 6.04 42.51 3.42
41 42 0.613260 TGTTACTGTGCCTGGGCTAG 59.387 55.000 13.05 12.66 42.51 3.42
42 43 0.613260 CTGTTACTGTGCCTGGGCTA 59.387 55.000 13.05 1.52 42.51 3.93
43 44 1.376466 CTGTTACTGTGCCTGGGCT 59.624 57.895 13.05 0.00 42.51 5.19
44 45 1.675641 CCTGTTACTGTGCCTGGGC 60.676 63.158 4.43 4.43 42.35 5.36
45 46 1.675641 GCCTGTTACTGTGCCTGGG 60.676 63.158 0.00 0.00 0.00 4.45
46 47 1.073025 TGCCTGTTACTGTGCCTGG 59.927 57.895 0.00 0.00 0.00 4.45
47 48 1.568612 CGTGCCTGTTACTGTGCCTG 61.569 60.000 0.00 0.00 0.00 4.85
48 49 1.301716 CGTGCCTGTTACTGTGCCT 60.302 57.895 0.00 0.00 0.00 4.75
49 50 1.164041 AACGTGCCTGTTACTGTGCC 61.164 55.000 0.00 0.00 0.00 5.01
50 51 0.041312 CAACGTGCCTGTTACTGTGC 60.041 55.000 0.00 0.00 0.00 4.57
51 52 0.041312 GCAACGTGCCTGTTACTGTG 60.041 55.000 0.00 0.00 37.42 3.66
52 53 2.317230 GCAACGTGCCTGTTACTGT 58.683 52.632 0.00 0.00 37.42 3.55
329 331 5.694910 CGTAAATGGCTCCGTAATAACTCAT 59.305 40.000 0.00 0.00 0.00 2.90
330 332 5.045215 CGTAAATGGCTCCGTAATAACTCA 58.955 41.667 0.00 0.00 0.00 3.41
331 333 5.045872 ACGTAAATGGCTCCGTAATAACTC 58.954 41.667 0.00 0.00 0.00 3.01
332 334 5.014808 ACGTAAATGGCTCCGTAATAACT 57.985 39.130 0.00 0.00 0.00 2.24
334 336 4.370917 GGACGTAAATGGCTCCGTAATAA 58.629 43.478 0.00 0.00 33.03 1.40
335 337 3.550639 CGGACGTAAATGGCTCCGTAATA 60.551 47.826 0.00 0.00 40.71 0.98
337 339 1.469595 CGGACGTAAATGGCTCCGTAA 60.470 52.381 0.00 0.00 40.71 3.18
339 341 1.153706 CGGACGTAAATGGCTCCGT 60.154 57.895 0.00 0.00 40.71 4.69
340 342 2.522638 GCGGACGTAAATGGCTCCG 61.523 63.158 4.87 4.87 46.97 4.63
342 344 1.713830 GTGCGGACGTAAATGGCTC 59.286 57.895 0.00 0.00 0.00 4.70
383 390 1.002087 GCCGTCCGATCCTGGATAAAT 59.998 52.381 9.66 0.00 40.91 1.40
387 394 2.123251 AGCCGTCCGATCCTGGAT 60.123 61.111 9.42 9.42 40.91 3.41
534 552 0.393132 TGCCAATGCCAATGCCAATG 60.393 50.000 0.00 0.00 36.33 2.82
535 553 0.548989 ATGCCAATGCCAATGCCAAT 59.451 45.000 0.00 0.00 36.33 3.16
536 554 0.328592 AATGCCAATGCCAATGCCAA 59.671 45.000 0.00 0.00 36.33 4.52
537 555 0.393132 CAATGCCAATGCCAATGCCA 60.393 50.000 0.00 0.00 36.33 4.92
538 556 1.098712 CCAATGCCAATGCCAATGCC 61.099 55.000 0.00 0.00 36.33 4.40
539 557 1.098712 CCCAATGCCAATGCCAATGC 61.099 55.000 0.00 0.00 36.33 3.56
540 558 0.253610 ACCCAATGCCAATGCCAATG 59.746 50.000 0.00 0.00 36.33 2.82
541 559 0.993470 AACCCAATGCCAATGCCAAT 59.007 45.000 0.00 0.00 36.33 3.16
542 560 0.036448 CAACCCAATGCCAATGCCAA 59.964 50.000 0.00 0.00 36.33 4.52
543 561 1.678137 CAACCCAATGCCAATGCCA 59.322 52.632 0.00 0.00 36.33 4.92
544 562 1.746239 GCAACCCAATGCCAATGCC 60.746 57.895 0.00 0.00 40.49 4.40
545 563 3.893572 GCAACCCAATGCCAATGC 58.106 55.556 0.00 0.00 40.49 3.56
559 577 1.269517 GCACCAAAATTCTGACGGCAA 60.270 47.619 0.00 0.00 0.00 4.52
567 585 0.798776 CGCTCTCGCACCAAAATTCT 59.201 50.000 0.00 0.00 35.30 2.40
603 645 7.960861 ACCTTGGAGAATGGAGATAGATAGATT 59.039 37.037 0.00 0.00 0.00 2.40
604 646 7.486473 ACCTTGGAGAATGGAGATAGATAGAT 58.514 38.462 0.00 0.00 0.00 1.98
606 648 6.723515 TGACCTTGGAGAATGGAGATAGATAG 59.276 42.308 0.00 0.00 0.00 2.08
608 650 5.471424 TGACCTTGGAGAATGGAGATAGAT 58.529 41.667 0.00 0.00 0.00 1.98
610 652 4.653341 ACTGACCTTGGAGAATGGAGATAG 59.347 45.833 0.00 0.00 0.00 2.08
611 653 4.624913 ACTGACCTTGGAGAATGGAGATA 58.375 43.478 0.00 0.00 0.00 1.98
612 654 3.454082 GACTGACCTTGGAGAATGGAGAT 59.546 47.826 0.00 0.00 0.00 2.75
613 655 2.834549 GACTGACCTTGGAGAATGGAGA 59.165 50.000 0.00 0.00 0.00 3.71
614 656 2.568956 TGACTGACCTTGGAGAATGGAG 59.431 50.000 0.00 0.00 0.00 3.86
615 657 2.568956 CTGACTGACCTTGGAGAATGGA 59.431 50.000 0.00 0.00 0.00 3.41
616 658 2.355513 CCTGACTGACCTTGGAGAATGG 60.356 54.545 0.00 0.00 0.00 3.16
617 659 2.938756 GCCTGACTGACCTTGGAGAATG 60.939 54.545 0.00 0.00 0.00 2.67
618 660 1.280421 GCCTGACTGACCTTGGAGAAT 59.720 52.381 0.00 0.00 0.00 2.40
619 661 0.687354 GCCTGACTGACCTTGGAGAA 59.313 55.000 0.00 0.00 0.00 2.87
644 686 2.742372 CGTTTGGACTCGCCTGGG 60.742 66.667 0.00 0.00 37.63 4.45
810 869 1.203199 TGGTTTTGGGTTGGGTATCCC 60.203 52.381 0.00 0.00 45.71 3.85
811 870 2.312424 TGGTTTTGGGTTGGGTATCC 57.688 50.000 0.00 0.00 0.00 2.59
812 871 3.257375 GTCTTGGTTTTGGGTTGGGTATC 59.743 47.826 0.00 0.00 0.00 2.24
813 872 3.236047 GTCTTGGTTTTGGGTTGGGTAT 58.764 45.455 0.00 0.00 0.00 2.73
1058 1128 4.825679 CCTCCCCCTCCTCCACCC 62.826 77.778 0.00 0.00 0.00 4.61
1059 1129 3.695825 TCCTCCCCCTCCTCCACC 61.696 72.222 0.00 0.00 0.00 4.61
1060 1130 2.041405 CTCCTCCCCCTCCTCCAC 60.041 72.222 0.00 0.00 0.00 4.02
1061 1131 3.368501 CCTCCTCCCCCTCCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
1608 1745 0.247736 GCTTGGACGACACAGAGGAT 59.752 55.000 0.00 0.00 0.00 3.24
1662 1799 1.004979 AGAGAAGTACCCTCGCTGTCT 59.995 52.381 7.09 0.00 35.88 3.41
1722 1871 1.781429 CCATTCGTATGAAGCGACTCG 59.219 52.381 3.27 0.00 37.57 4.18
2276 2425 8.681486 ACTGCAATGCTACTATCAATATTTGA 57.319 30.769 6.82 0.00 45.01 2.69
2281 2430 7.035612 CGGATACTGCAATGCTACTATCAATA 58.964 38.462 6.82 0.00 0.00 1.90
2282 2431 5.871524 CGGATACTGCAATGCTACTATCAAT 59.128 40.000 6.82 0.00 0.00 2.57
2283 2432 5.230182 CGGATACTGCAATGCTACTATCAA 58.770 41.667 6.82 0.00 0.00 2.57
2285 2434 4.082190 TCCGGATACTGCAATGCTACTATC 60.082 45.833 6.82 7.64 0.00 2.08
2286 2435 3.832490 TCCGGATACTGCAATGCTACTAT 59.168 43.478 6.82 0.00 0.00 2.12
2287 2436 3.227614 TCCGGATACTGCAATGCTACTA 58.772 45.455 6.82 0.00 0.00 1.82
2288 2437 2.039418 TCCGGATACTGCAATGCTACT 58.961 47.619 6.82 0.00 0.00 2.57
2305 2471 3.428045 GGAAACTGCATTGATTCCTTCCG 60.428 47.826 7.50 0.00 38.61 4.30
2350 2516 3.181482 TGCACTTCGATTTTGGCAAGAAA 60.181 39.130 0.00 0.00 0.00 2.52
2351 2517 2.360483 TGCACTTCGATTTTGGCAAGAA 59.640 40.909 0.00 0.00 0.00 2.52
2432 2598 0.033504 ACAGCATATACGCTTCCGGG 59.966 55.000 0.00 0.00 41.38 5.73
2519 2685 3.242316 ACGCTCACGAACAAGAAGAAAAC 60.242 43.478 0.00 0.00 43.93 2.43
2520 2686 2.933906 ACGCTCACGAACAAGAAGAAAA 59.066 40.909 0.00 0.00 43.93 2.29
2529 2695 3.060138 GTGTTTCATAACGCTCACGAACA 60.060 43.478 0.00 0.00 43.93 3.18
2539 2705 2.570169 CTTGCCACGTGTTTCATAACG 58.430 47.619 15.65 0.00 45.15 3.18
2566 2732 3.648067 CCCATTAGAACTGGAGAGGCATA 59.352 47.826 0.00 0.00 35.70 3.14
2606 2772 7.974501 AGTGTTAGATTCAATAACTCACTACCG 59.025 37.037 0.00 0.00 34.80 4.02
2609 2775 7.764443 GCCAGTGTTAGATTCAATAACTCACTA 59.236 37.037 0.00 0.00 34.80 2.74
2632 2798 9.941325 ACAATAAGAATGATACAAAATTTGCCA 57.059 25.926 5.52 2.39 0.00 4.92
2748 2914 3.758023 TGGTTATGTCAATCAGGCACTTG 59.242 43.478 0.00 0.00 34.60 3.16
2752 2918 5.754782 AGTTATGGTTATGTCAATCAGGCA 58.245 37.500 0.00 0.00 35.48 4.75
3034 3201 1.610363 TACCATGCCAAAAGTCGCAA 58.390 45.000 0.00 0.00 38.75 4.85
3038 3205 2.298729 TGCCTTTACCATGCCAAAAGTC 59.701 45.455 10.10 1.38 0.00 3.01
3079 3246 6.126409 AGACCAATTCAACAACCTTGACTTA 58.874 36.000 0.00 0.00 0.00 2.24
3086 3254 6.597562 TGTAGTAAGACCAATTCAACAACCT 58.402 36.000 0.00 0.00 0.00 3.50
3164 3334 4.152402 CCTAATACCCGAGAAATTGCATCG 59.848 45.833 0.00 0.00 36.24 3.84
3179 3349 3.433173 CCAGTAACCACCTGCCTAATACC 60.433 52.174 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.