Multiple sequence alignment - TraesCS3B01G340100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G340100 chr3B 100.000 3563 0 0 1 3563 545815342 545811780 0.000000e+00 6580.0
1 TraesCS3B01G340100 chr3B 87.266 1547 140 30 154 1681 546184917 546183409 0.000000e+00 1712.0
2 TraesCS3B01G340100 chr3B 83.321 1313 109 49 1866 3125 546183224 546181969 0.000000e+00 1110.0
3 TraesCS3B01G340100 chr3B 86.380 558 54 13 1892 2444 546183771 546183231 1.100000e-164 590.0
4 TraesCS3B01G340100 chr3B 82.957 399 44 11 1301 1681 545813469 545813077 4.410000e-89 339.0
5 TraesCS3B01G340100 chr3B 82.915 398 46 10 1874 2266 545814042 545813662 4.410000e-89 339.0
6 TraesCS3B01G340100 chr3B 88.293 205 21 1 1488 1689 546183035 546182831 3.550000e-60 243.0
7 TraesCS3B01G340100 chr3B 93.789 161 9 1 1674 1834 546183382 546183223 1.280000e-59 241.0
8 TraesCS3B01G340100 chr3B 91.946 149 12 0 1678 1826 545813047 545812899 3.600000e-50 209.0
9 TraesCS3B01G340100 chr3B 91.946 149 12 0 2296 2444 545813665 545813517 3.600000e-50 209.0
10 TraesCS3B01G340100 chr3B 86.154 195 15 4 3369 3563 546181851 546181669 2.170000e-47 200.0
11 TraesCS3B01G340100 chr3B 89.542 153 15 1 1674 1826 546182800 546182649 3.630000e-45 193.0
12 TraesCS3B01G340100 chr3A 86.982 1521 94 43 1674 3125 531667958 531666473 0.000000e+00 1616.0
13 TraesCS3B01G340100 chr3A 90.275 874 69 11 136 1000 531669841 531668975 0.000000e+00 1129.0
14 TraesCS3B01G340100 chr3A 92.229 682 44 3 1000 1681 531668657 531667985 0.000000e+00 957.0
15 TraesCS3B01G340100 chr3A 87.153 576 52 9 1874 2444 531668365 531667807 5.020000e-178 634.0
16 TraesCS3B01G340100 chr3A 78.392 398 64 18 1306 1689 531667754 531667365 4.600000e-59 239.0
17 TraesCS3B01G340100 chr3A 90.667 150 12 2 1678 1826 531667331 531667183 7.800000e-47 198.0
18 TraesCS3B01G340100 chr3A 89.706 136 13 1 1 136 407460804 407460938 4.730000e-39 172.0
19 TraesCS3B01G340100 chr3D 84.808 1514 101 50 1674 3125 419560649 419562095 0.000000e+00 1402.0
20 TraesCS3B01G340100 chr3D 89.964 548 32 9 758 1305 419559755 419560279 0.000000e+00 686.0
21 TraesCS3B01G340100 chr3D 88.372 516 47 6 132 635 419520131 419520645 3.040000e-170 608.0
22 TraesCS3B01G340100 chr3D 86.090 532 50 11 1919 2444 419560287 419560800 5.200000e-153 551.0
23 TraesCS3B01G340100 chr3D 94.643 336 18 0 1346 1681 419560287 419560622 4.080000e-144 521.0
24 TraesCS3B01G340100 chr3D 78.517 391 61 11 1306 1686 419560853 419561230 5.950000e-58 235.0
25 TraesCS3B01G340100 chr3D 92.199 141 10 1 634 774 419520804 419520943 7.800000e-47 198.0
26 TraesCS3B01G340100 chr3D 89.677 155 11 5 1674 1826 419561264 419561415 3.630000e-45 193.0
27 TraesCS3B01G340100 chr7D 90.909 143 11 2 1 142 171049817 171049676 1.310000e-44 191.0
28 TraesCS3B01G340100 chrUn 83.173 208 22 11 167 366 112606669 112606871 1.020000e-40 178.0
29 TraesCS3B01G340100 chr5A 89.928 139 11 3 1 138 362688528 362688392 3.660000e-40 176.0
30 TraesCS3B01G340100 chr5D 88.889 144 13 2 1 142 461419387 461419529 1.310000e-39 174.0
31 TraesCS3B01G340100 chr5D 90.152 132 11 2 1 132 554171228 554171357 1.700000e-38 171.0
32 TraesCS3B01G340100 chr4D 89.781 137 12 2 3 138 407461621 407461486 1.310000e-39 174.0
33 TraesCS3B01G340100 chr6D 88.732 142 15 1 1 142 351613377 351613517 4.730000e-39 172.0
34 TraesCS3B01G340100 chr7B 88.028 142 16 1 1 142 92007681 92007821 2.200000e-37 167.0
35 TraesCS3B01G340100 chr2A 86.486 148 18 2 1 147 133314226 133314372 1.020000e-35 161.0
36 TraesCS3B01G340100 chr6B 79.149 235 29 14 151 377 658230991 658231213 1.030000e-30 145.0
37 TraesCS3B01G340100 chr1B 75.745 235 38 10 138 366 584314055 584313834 2.260000e-17 100.0
38 TraesCS3B01G340100 chr4A 80.165 121 20 4 167 284 541885264 541885145 1.760000e-13 87.9
39 TraesCS3B01G340100 chr4A 75.109 229 34 17 140 364 552710071 552710280 6.340000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G340100 chr3B 545811780 545815342 3562 True 1535.200000 6580 89.952800 1 3563 5 chr3B.!!$R1 3562
1 TraesCS3B01G340100 chr3B 546181669 546184917 3248 True 612.714286 1712 87.820714 154 3563 7 chr3B.!!$R2 3409
2 TraesCS3B01G340100 chr3A 531666473 531669841 3368 True 795.500000 1616 87.616333 136 3125 6 chr3A.!!$R1 2989
3 TraesCS3B01G340100 chr3D 419559755 419562095 2340 False 598.000000 1402 87.283167 758 3125 6 chr3D.!!$F2 2367
4 TraesCS3B01G340100 chr3D 419520131 419520943 812 False 403.000000 608 90.285500 132 774 2 chr3D.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 1092 0.034186 CCAGAAGTAGGCCCATTGCA 60.034 55.0 0.0 0.0 43.89 4.08 F
1214 1721 0.266152 GATGGGGAGGAAGAGGAGGA 59.734 60.0 0.0 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 3008 0.036388 CACGCTGTACCCCTTGACAT 60.036 55.0 0.0 0.0 0.00 3.06 R
2572 3136 0.516877 CGCAGAAATGGCTTCGAACA 59.483 50.0 0.0 0.0 39.22 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.020731 ACCTACTGTATTTTAACTTTTCCATGG 57.979 33.333 4.97 4.97 0.00 3.66
49 50 7.973944 CCTACTGTATTTTAACTTTTCCATGGC 59.026 37.037 6.96 0.00 0.00 4.40
50 51 7.539034 ACTGTATTTTAACTTTTCCATGGCT 57.461 32.000 6.96 0.00 0.00 4.75
51 52 7.962441 ACTGTATTTTAACTTTTCCATGGCTT 58.038 30.769 6.96 0.00 0.00 4.35
52 53 9.084533 ACTGTATTTTAACTTTTCCATGGCTTA 57.915 29.630 6.96 0.00 0.00 3.09
57 58 7.412853 TTTAACTTTTCCATGGCTTATACCC 57.587 36.000 6.96 0.00 0.00 3.69
58 59 4.601406 ACTTTTCCATGGCTTATACCCA 57.399 40.909 6.96 0.00 36.66 4.51
59 60 4.278310 ACTTTTCCATGGCTTATACCCAC 58.722 43.478 6.96 0.00 34.68 4.61
60 61 3.306472 TTTCCATGGCTTATACCCACC 57.694 47.619 6.96 0.00 34.68 4.61
61 62 0.762418 TCCATGGCTTATACCCACCG 59.238 55.000 6.96 0.00 34.68 4.94
62 63 0.762418 CCATGGCTTATACCCACCGA 59.238 55.000 0.00 0.00 34.68 4.69
63 64 1.142060 CCATGGCTTATACCCACCGAA 59.858 52.381 0.00 0.00 34.68 4.30
64 65 2.422235 CCATGGCTTATACCCACCGAAA 60.422 50.000 0.00 0.00 34.68 3.46
65 66 2.406596 TGGCTTATACCCACCGAAAC 57.593 50.000 0.00 0.00 0.00 2.78
66 67 1.629353 TGGCTTATACCCACCGAAACA 59.371 47.619 0.00 0.00 0.00 2.83
67 68 2.040012 TGGCTTATACCCACCGAAACAA 59.960 45.455 0.00 0.00 0.00 2.83
68 69 3.284617 GGCTTATACCCACCGAAACAAT 58.715 45.455 0.00 0.00 0.00 2.71
69 70 3.314357 GGCTTATACCCACCGAAACAATC 59.686 47.826 0.00 0.00 0.00 2.67
70 71 3.314357 GCTTATACCCACCGAAACAATCC 59.686 47.826 0.00 0.00 0.00 3.01
71 72 4.519213 CTTATACCCACCGAAACAATCCA 58.481 43.478 0.00 0.00 0.00 3.41
72 73 3.662759 ATACCCACCGAAACAATCCAT 57.337 42.857 0.00 0.00 0.00 3.41
73 74 4.781775 ATACCCACCGAAACAATCCATA 57.218 40.909 0.00 0.00 0.00 2.74
74 75 2.999331 ACCCACCGAAACAATCCATAG 58.001 47.619 0.00 0.00 0.00 2.23
75 76 2.307686 ACCCACCGAAACAATCCATAGT 59.692 45.455 0.00 0.00 0.00 2.12
76 77 3.245122 ACCCACCGAAACAATCCATAGTT 60.245 43.478 0.00 0.00 0.00 2.24
77 78 3.761752 CCCACCGAAACAATCCATAGTTT 59.238 43.478 0.00 0.00 40.38 2.66
78 79 4.142469 CCCACCGAAACAATCCATAGTTTC 60.142 45.833 7.72 7.72 46.17 2.78
98 99 7.653523 GTTTCATCAAAACAAGCAAACAATG 57.346 32.000 0.00 0.00 45.49 2.82
200 208 7.982761 TTCAAAAATAGCATTTTGGAGCATT 57.017 28.000 17.04 0.00 45.79 3.56
373 388 1.813513 CTCGGGAGCAGACAATTTGT 58.186 50.000 0.63 0.63 0.00 2.83
374 389 1.466167 CTCGGGAGCAGACAATTTGTG 59.534 52.381 6.80 0.00 0.00 3.33
396 411 4.080807 TGTCGTAAGCCCTCAAATCCATTA 60.081 41.667 0.00 0.00 37.18 1.90
494 510 1.064017 TCTGGTCCAGGTGCTTTTGTT 60.064 47.619 19.11 0.00 31.51 2.83
532 548 5.636123 TGAGTGCATTTTTAACCCCTTCTA 58.364 37.500 0.00 0.00 0.00 2.10
548 564 5.280011 CCCCTTCTATTGTATATGGAGCGTT 60.280 44.000 0.00 0.00 0.00 4.84
553 569 7.754851 TCTATTGTATATGGAGCGTTCAGTA 57.245 36.000 0.53 0.00 0.00 2.74
566 583 4.395854 AGCGTTCAGTATTGCATTCATTGA 59.604 37.500 0.00 0.00 0.00 2.57
602 620 1.490490 TGGTGCACAAGAGAGAACCTT 59.510 47.619 20.43 0.00 0.00 3.50
629 647 2.027561 TCCCCAACGTTTCCTCTGTATG 60.028 50.000 0.00 0.00 0.00 2.39
638 816 7.179076 ACGTTTCCTCTGTATGGTATAGTTT 57.821 36.000 0.00 0.00 0.00 2.66
669 848 1.885233 TCTTCCGCATGATTGTGCAAA 59.115 42.857 0.00 0.00 45.30 3.68
903 1092 0.034186 CCAGAAGTAGGCCCATTGCA 60.034 55.000 0.00 0.00 43.89 4.08
940 1129 1.931841 CATCGCACTGATTCTGTCCAG 59.068 52.381 0.00 0.00 34.13 3.86
1062 1569 3.003763 GCGGTGGGAGAGAAGGGT 61.004 66.667 0.00 0.00 0.00 4.34
1071 1578 3.069318 GAGAAGGGTCCGGCGACT 61.069 66.667 9.30 0.00 39.15 4.18
1098 1605 4.547367 GCGATGGGGAAGACGGGG 62.547 72.222 0.00 0.00 0.00 5.73
1099 1606 4.547367 CGATGGGGAAGACGGGGC 62.547 72.222 0.00 0.00 0.00 5.80
1197 1704 1.839894 GGCCGGGAATGAGGAAGAT 59.160 57.895 2.18 0.00 0.00 2.40
1206 1713 2.594536 ATGAGGAAGATGGGGAGGAA 57.405 50.000 0.00 0.00 0.00 3.36
1207 1714 1.885049 TGAGGAAGATGGGGAGGAAG 58.115 55.000 0.00 0.00 0.00 3.46
1208 1715 1.366082 TGAGGAAGATGGGGAGGAAGA 59.634 52.381 0.00 0.00 0.00 2.87
1209 1716 2.046292 GAGGAAGATGGGGAGGAAGAG 58.954 57.143 0.00 0.00 0.00 2.85
1210 1717 1.135960 GGAAGATGGGGAGGAAGAGG 58.864 60.000 0.00 0.00 0.00 3.69
1211 1718 1.344496 GGAAGATGGGGAGGAAGAGGA 60.344 57.143 0.00 0.00 0.00 3.71
1212 1719 2.046292 GAAGATGGGGAGGAAGAGGAG 58.954 57.143 0.00 0.00 0.00 3.69
1213 1720 0.267356 AGATGGGGAGGAAGAGGAGG 59.733 60.000 0.00 0.00 0.00 4.30
1214 1721 0.266152 GATGGGGAGGAAGAGGAGGA 59.734 60.000 0.00 0.00 0.00 3.71
1256 1766 1.810755 GCGAAAGGGAGAAAATCGGTT 59.189 47.619 0.00 0.00 34.29 4.44
1401 1911 1.211190 GCGACGACGGTTTAGGAGT 59.789 57.895 9.67 0.00 40.15 3.85
1414 1924 4.262592 GGTTTAGGAGTACGAAGGGACAAA 60.263 45.833 0.00 0.00 0.00 2.83
1530 2040 0.602638 GGATGCTGTTCACGGTGTCA 60.603 55.000 8.17 8.08 0.00 3.58
1586 2096 4.899239 GATCGACCAGGGCTGCGG 62.899 72.222 0.00 0.00 0.00 5.69
1603 2113 2.824546 GCGGAGGCATCATCCAGA 59.175 61.111 0.00 0.00 39.62 3.86
1642 2152 3.770040 CCCTCGCCACGGTGATCA 61.770 66.667 10.28 0.00 33.90 2.92
1653 2163 3.002791 CACGGTGATCAAGTACTGCAAT 58.997 45.455 0.74 0.00 0.00 3.56
1706 2249 2.759973 ATCCGAGGAGGCGCTGAA 60.760 61.111 7.64 0.00 40.77 3.02
1731 2274 2.125512 GACCGCAAGCTCGTCCAT 60.126 61.111 0.00 0.00 0.00 3.41
1774 2317 4.831307 ACGTCGTCATCGCCGCTC 62.831 66.667 0.00 0.00 42.12 5.03
1829 2372 3.744719 CCAGAAGGTCGCCGTCGA 61.745 66.667 0.00 0.00 43.28 4.20
1876 2419 1.690893 GGCAGATGCACCAGATAGAGA 59.309 52.381 7.19 0.00 44.36 3.10
1877 2420 2.288948 GGCAGATGCACCAGATAGAGAG 60.289 54.545 7.19 0.00 44.36 3.20
1911 2454 3.557054 GCACATGGTTCTCTGGACTTACA 60.557 47.826 0.00 0.00 0.00 2.41
1954 2500 4.883354 CGGATGGGGCAAGGGAGC 62.883 72.222 0.00 0.00 0.00 4.70
1956 2502 3.797353 GATGGGGCAAGGGAGCGA 61.797 66.667 0.00 0.00 34.64 4.93
1957 2503 4.115199 ATGGGGCAAGGGAGCGAC 62.115 66.667 0.00 0.00 34.64 5.19
2041 2587 1.732917 CAGGTTGCTGGCGAAAACA 59.267 52.632 0.00 0.00 0.00 2.83
2084 2630 5.163519 CCAGCGGAAAAATCATCACCTTAAT 60.164 40.000 0.00 0.00 0.00 1.40
2121 2667 2.027625 GTTCAAGGTGTCGGAGGCG 61.028 63.158 0.00 0.00 28.88 5.52
2196 2742 1.166531 GCATCATCCCGCTACCCAAC 61.167 60.000 0.00 0.00 0.00 3.77
2229 2775 1.300465 CCTCGCCATGGTGATCGAG 60.300 63.158 27.68 25.80 45.50 4.04
2238 2784 2.363788 TGGTGATCGAGTACTGCAAC 57.636 50.000 0.00 0.00 0.00 4.17
2239 2785 1.616374 TGGTGATCGAGTACTGCAACA 59.384 47.619 0.00 0.00 0.00 3.33
2267 2828 4.705519 CGCCGCCTTTGCCAACAG 62.706 66.667 0.00 0.00 0.00 3.16
2269 2830 4.362476 CCGCCTTTGCCAACAGCC 62.362 66.667 0.00 0.00 42.71 4.85
2312 2873 2.892640 CAACTCCGAGGCATCCGA 59.107 61.111 0.00 0.00 0.00 4.55
2313 2874 1.227089 CAACTCCGAGGCATCCGAG 60.227 63.158 13.92 13.92 36.99 4.63
2324 2885 2.522923 ATCCGAGGAGGCGCTGAT 60.523 61.111 7.64 0.00 40.77 2.90
2382 2943 1.360551 CGCCCTCTACGACCTCATG 59.639 63.158 0.00 0.00 0.00 3.07
2412 2973 0.995024 ACTTCCTCCACATCAAGGGG 59.005 55.000 0.00 0.00 44.73 4.79
2447 3008 2.342279 CCAGAAGGTCGCCGACAA 59.658 61.111 20.08 0.00 33.68 3.18
2448 3009 1.079127 CCAGAAGGTCGCCGACAAT 60.079 57.895 20.08 6.65 33.68 2.71
2449 3010 1.361668 CCAGAAGGTCGCCGACAATG 61.362 60.000 20.08 10.84 33.68 2.82
2457 3018 2.398554 CGCCGACAATGTCAAGGGG 61.399 63.158 14.24 11.43 32.09 4.79
2458 3019 1.303317 GCCGACAATGTCAAGGGGT 60.303 57.895 14.24 0.00 32.09 4.95
2460 3021 1.734163 CCGACAATGTCAAGGGGTAC 58.266 55.000 14.24 0.00 32.09 3.34
2565 3129 1.192428 GGGCCTTCGAAGAGTAGGAA 58.808 55.000 26.61 0.00 39.51 3.36
2572 3136 4.162509 CCTTCGAAGAGTAGGAATCCCTTT 59.837 45.833 26.61 0.00 40.46 3.11
2596 3161 1.466950 CGAAGCCATTTCTGCGGTAAA 59.533 47.619 0.00 0.00 31.57 2.01
2666 3231 8.832735 TCCTTTATCACTAATTTCCTAGTGGTT 58.167 33.333 10.10 2.91 45.93 3.67
2673 3238 7.996644 TCACTAATTTCCTAGTGGTTGTTTCTT 59.003 33.333 10.10 0.00 45.93 2.52
2676 3241 9.720769 CTAATTTCCTAGTGGTTGTTTCTTAGA 57.279 33.333 0.00 0.00 34.23 2.10
2677 3242 8.990163 AATTTCCTAGTGGTTGTTTCTTAGAA 57.010 30.769 0.00 0.00 34.23 2.10
2696 3261 9.189156 TCTTAGAATTTGTCAAAGATTATGGGG 57.811 33.333 4.03 0.00 0.00 4.96
2715 3280 3.353557 GGGGTAAGGTCAACTTGATTCC 58.646 50.000 0.00 0.00 40.37 3.01
2740 3329 4.442375 TCCACTCTGTCGAAGAAGATTC 57.558 45.455 0.00 0.00 39.69 2.52
2744 3333 3.506455 ACTCTGTCGAAGAAGATTCGGAA 59.494 43.478 9.82 0.00 39.69 4.30
2782 3371 3.125316 GCTTTGAACTGCATGCTTCAAA 58.875 40.909 30.37 30.37 41.76 2.69
2784 3373 4.389890 TTTGAACTGCATGCTTCAAAGT 57.610 36.364 29.56 18.80 40.04 2.66
2810 3408 8.106462 TGGATGAATGAGTTAACCTGACATTTA 58.894 33.333 0.88 7.06 32.50 1.40
2817 3415 7.227873 TGAGTTAACCTGACATTTATCACCAA 58.772 34.615 0.88 0.00 0.00 3.67
2830 3428 1.265236 TCACCAACCCCATGAATTGC 58.735 50.000 0.00 0.00 0.00 3.56
2831 3429 1.203162 TCACCAACCCCATGAATTGCT 60.203 47.619 0.00 0.00 0.00 3.91
2870 3468 3.860536 GCTACTCTTGATCGAAGGTGTTC 59.139 47.826 0.00 0.00 31.85 3.18
2878 3476 4.023980 TGATCGAAGGTGTTCTGGATAGT 58.976 43.478 0.00 0.00 0.00 2.12
2879 3477 4.466370 TGATCGAAGGTGTTCTGGATAGTT 59.534 41.667 0.00 0.00 0.00 2.24
2880 3478 5.655090 TGATCGAAGGTGTTCTGGATAGTTA 59.345 40.000 0.00 0.00 0.00 2.24
2881 3479 5.320549 TCGAAGGTGTTCTGGATAGTTAC 57.679 43.478 0.00 0.00 0.00 2.50
2882 3480 4.159135 TCGAAGGTGTTCTGGATAGTTACC 59.841 45.833 0.00 0.00 0.00 2.85
2888 3486 6.832900 AGGTGTTCTGGATAGTTACCTACTAC 59.167 42.308 0.00 0.00 41.99 2.73
2904 3502 4.646945 CCTACTACTCTTGATCTGCTTGGA 59.353 45.833 0.00 0.00 0.00 3.53
2911 3509 5.589452 ACTCTTGATCTGCTTGGATGAATTC 59.411 40.000 0.00 0.00 0.00 2.17
2914 3512 4.711399 TGATCTGCTTGGATGAATTCGAT 58.289 39.130 0.04 0.00 0.00 3.59
2925 3523 6.830912 TGGATGAATTCGATAGTTTCCTCAT 58.169 36.000 0.04 0.00 31.37 2.90
2941 3539 6.882610 TTCCTCATAATGCATGTTATGTCC 57.117 37.500 16.07 0.00 40.97 4.02
2943 3541 6.233434 TCCTCATAATGCATGTTATGTCCTC 58.767 40.000 16.07 0.00 40.97 3.71
2958 3556 2.247358 GTCCTCCCCATTTTCTTGCAA 58.753 47.619 0.00 0.00 0.00 4.08
2960 3558 1.276138 CCTCCCCATTTTCTTGCAACC 59.724 52.381 0.00 0.00 0.00 3.77
2961 3559 1.969923 CTCCCCATTTTCTTGCAACCA 59.030 47.619 0.00 0.00 0.00 3.67
2993 3596 3.251729 TGATTGCTCAGTCTTTGCAGTTC 59.748 43.478 0.00 0.00 38.01 3.01
3011 3614 5.082059 CAGTTCTGCTTGTATAAAGTTGCG 58.918 41.667 0.00 0.00 0.00 4.85
3028 3631 6.024552 AGTTGCGGTGAATATTTGAAATGT 57.975 33.333 0.00 0.00 0.00 2.71
3029 3632 5.863397 AGTTGCGGTGAATATTTGAAATGTG 59.137 36.000 0.00 0.00 0.00 3.21
3030 3633 4.742417 TGCGGTGAATATTTGAAATGTGG 58.258 39.130 0.00 0.00 0.00 4.17
3031 3634 3.551485 GCGGTGAATATTTGAAATGTGGC 59.449 43.478 0.00 0.00 0.00 5.01
3032 3635 3.790820 CGGTGAATATTTGAAATGTGGCG 59.209 43.478 0.00 0.00 0.00 5.69
3041 3652 2.777094 TGAAATGTGGCGAGTGAATGA 58.223 42.857 0.00 0.00 0.00 2.57
3070 3681 4.996758 CCTGATGTGTGTGTCACTGATTAA 59.003 41.667 4.27 0.00 46.27 1.40
3071 3682 5.645067 CCTGATGTGTGTGTCACTGATTAAT 59.355 40.000 4.27 0.00 46.27 1.40
3073 3684 4.747540 TGTGTGTGTCACTGATTAATGC 57.252 40.909 4.27 0.00 46.27 3.56
3074 3685 3.501828 TGTGTGTGTCACTGATTAATGCC 59.498 43.478 4.27 0.00 46.27 4.40
3076 3687 4.156556 GTGTGTGTCACTGATTAATGCCAT 59.843 41.667 4.27 0.00 43.13 4.40
3077 3688 4.156373 TGTGTGTCACTGATTAATGCCATG 59.844 41.667 4.27 0.00 35.11 3.66
3079 3690 5.008980 TGTGTCACTGATTAATGCCATGAA 58.991 37.500 4.27 0.00 0.00 2.57
3080 3691 5.653330 TGTGTCACTGATTAATGCCATGAAT 59.347 36.000 4.27 0.00 0.00 2.57
3081 3692 6.183360 TGTGTCACTGATTAATGCCATGAATC 60.183 38.462 7.71 7.71 0.00 2.52
3082 3693 5.007921 TGTCACTGATTAATGCCATGAATCG 59.992 40.000 9.70 7.41 33.18 3.34
3083 3694 4.023792 TCACTGATTAATGCCATGAATCGC 60.024 41.667 9.70 0.00 33.18 4.58
3085 3696 4.214971 ACTGATTAATGCCATGAATCGCTC 59.785 41.667 9.70 0.00 33.18 5.03
3086 3697 4.392047 TGATTAATGCCATGAATCGCTCT 58.608 39.130 9.70 0.00 33.18 4.09
3089 3700 1.880271 ATGCCATGAATCGCTCTCTG 58.120 50.000 0.00 0.00 0.00 3.35
3114 3725 6.483640 GTCTGTCTGTGTTGGACTATTCTTTT 59.516 38.462 0.00 0.00 35.04 2.27
3115 3726 6.483307 TCTGTCTGTGTTGGACTATTCTTTTG 59.517 38.462 0.00 0.00 35.04 2.44
3116 3727 6.353323 TGTCTGTGTTGGACTATTCTTTTGA 58.647 36.000 0.00 0.00 35.04 2.69
3118 3729 7.502226 TGTCTGTGTTGGACTATTCTTTTGATT 59.498 33.333 0.00 0.00 35.04 2.57
3119 3730 8.017946 GTCTGTGTTGGACTATTCTTTTGATTC 58.982 37.037 0.00 0.00 0.00 2.52
3120 3731 7.719193 TCTGTGTTGGACTATTCTTTTGATTCA 59.281 33.333 0.00 0.00 0.00 2.57
3121 3732 7.874940 TGTGTTGGACTATTCTTTTGATTCAG 58.125 34.615 0.00 0.00 0.00 3.02
3122 3733 6.803807 GTGTTGGACTATTCTTTTGATTCAGC 59.196 38.462 0.00 0.00 0.00 4.26
3123 3734 6.489700 TGTTGGACTATTCTTTTGATTCAGCA 59.510 34.615 0.00 0.00 0.00 4.41
3124 3735 7.177216 TGTTGGACTATTCTTTTGATTCAGCAT 59.823 33.333 0.00 0.00 0.00 3.79
3125 3736 7.325660 TGGACTATTCTTTTGATTCAGCATC 57.674 36.000 0.00 0.00 0.00 3.91
3126 3737 6.885918 TGGACTATTCTTTTGATTCAGCATCA 59.114 34.615 0.00 0.00 40.43 3.07
3136 3747 6.395426 TTGATTCAGCATCAAGTGTTTTCT 57.605 33.333 0.00 0.00 45.45 2.52
3137 3748 6.395426 TGATTCAGCATCAAGTGTTTTCTT 57.605 33.333 0.00 0.00 39.11 2.52
3138 3749 6.808829 TGATTCAGCATCAAGTGTTTTCTTT 58.191 32.000 0.00 0.00 39.11 2.52
3139 3750 6.919662 TGATTCAGCATCAAGTGTTTTCTTTC 59.080 34.615 0.00 0.00 39.11 2.62
3140 3751 5.186996 TCAGCATCAAGTGTTTTCTTTCC 57.813 39.130 0.00 0.00 0.00 3.13
3141 3752 4.037923 TCAGCATCAAGTGTTTTCTTTCCC 59.962 41.667 0.00 0.00 0.00 3.97
3142 3753 3.321968 AGCATCAAGTGTTTTCTTTCCCC 59.678 43.478 0.00 0.00 0.00 4.81
3143 3754 3.321968 GCATCAAGTGTTTTCTTTCCCCT 59.678 43.478 0.00 0.00 0.00 4.79
3144 3755 4.522789 GCATCAAGTGTTTTCTTTCCCCTA 59.477 41.667 0.00 0.00 0.00 3.53
3145 3756 5.010617 GCATCAAGTGTTTTCTTTCCCCTAA 59.989 40.000 0.00 0.00 0.00 2.69
3146 3757 6.295292 GCATCAAGTGTTTTCTTTCCCCTAAT 60.295 38.462 0.00 0.00 0.00 1.73
3147 3758 7.093945 GCATCAAGTGTTTTCTTTCCCCTAATA 60.094 37.037 0.00 0.00 0.00 0.98
3148 3759 7.754851 TCAAGTGTTTTCTTTCCCCTAATAC 57.245 36.000 0.00 0.00 0.00 1.89
3149 3760 7.523415 TCAAGTGTTTTCTTTCCCCTAATACT 58.477 34.615 0.00 0.00 0.00 2.12
3150 3761 7.664318 TCAAGTGTTTTCTTTCCCCTAATACTC 59.336 37.037 0.00 0.00 0.00 2.59
3151 3762 7.331089 AGTGTTTTCTTTCCCCTAATACTCT 57.669 36.000 0.00 0.00 0.00 3.24
3152 3763 7.756614 AGTGTTTTCTTTCCCCTAATACTCTT 58.243 34.615 0.00 0.00 0.00 2.85
3153 3764 7.665974 AGTGTTTTCTTTCCCCTAATACTCTTG 59.334 37.037 0.00 0.00 0.00 3.02
3154 3765 7.664318 GTGTTTTCTTTCCCCTAATACTCTTGA 59.336 37.037 0.00 0.00 0.00 3.02
3155 3766 8.390921 TGTTTTCTTTCCCCTAATACTCTTGAT 58.609 33.333 0.00 0.00 0.00 2.57
3156 3767 8.678199 GTTTTCTTTCCCCTAATACTCTTGATG 58.322 37.037 0.00 0.00 0.00 3.07
3157 3768 7.749377 TTCTTTCCCCTAATACTCTTGATGA 57.251 36.000 0.00 0.00 0.00 2.92
3159 3770 5.552870 TTCCCCTAATACTCTTGATGAGC 57.447 43.478 0.00 0.00 46.41 4.26
3160 3771 4.820775 TCCCCTAATACTCTTGATGAGCT 58.179 43.478 0.00 0.00 46.41 4.09
3161 3772 4.590647 TCCCCTAATACTCTTGATGAGCTG 59.409 45.833 0.00 0.00 46.41 4.24
3182 3793 5.064452 GCTGGCATGAGTGAATAGCATATAC 59.936 44.000 0.00 0.00 31.59 1.47
3183 3794 6.364568 TGGCATGAGTGAATAGCATATACT 57.635 37.500 0.00 0.00 0.00 2.12
3184 3795 7.480760 TGGCATGAGTGAATAGCATATACTA 57.519 36.000 0.00 0.00 0.00 1.82
3187 3798 7.323420 GCATGAGTGAATAGCATATACTACCA 58.677 38.462 0.00 0.00 0.00 3.25
3188 3799 7.984050 GCATGAGTGAATAGCATATACTACCAT 59.016 37.037 0.00 0.00 0.00 3.55
3189 3800 9.310716 CATGAGTGAATAGCATATACTACCATG 57.689 37.037 0.00 0.00 0.00 3.66
3190 3801 8.650143 TGAGTGAATAGCATATACTACCATGA 57.350 34.615 0.00 0.00 0.00 3.07
3191 3802 9.259832 TGAGTGAATAGCATATACTACCATGAT 57.740 33.333 0.00 0.00 0.00 2.45
3230 3864 5.124617 TGTGTGTTTTGCTTGACTACATTCA 59.875 36.000 0.00 0.00 0.00 2.57
3234 3868 5.762711 TGTTTTGCTTGACTACATTCAGCTA 59.237 36.000 0.00 0.00 0.00 3.32
3237 3871 5.862924 TGCTTGACTACATTCAGCTAAAC 57.137 39.130 0.00 0.00 0.00 2.01
3250 3884 9.765795 ACATTCAGCTAAACAATATACTAGGTC 57.234 33.333 0.00 0.00 0.00 3.85
3251 3885 8.916654 CATTCAGCTAAACAATATACTAGGTCG 58.083 37.037 0.00 0.00 0.00 4.79
3252 3886 6.444633 TCAGCTAAACAATATACTAGGTCGC 58.555 40.000 0.00 0.00 0.00 5.19
3253 3887 6.264744 TCAGCTAAACAATATACTAGGTCGCT 59.735 38.462 0.00 0.00 0.00 4.93
3254 3888 6.583050 CAGCTAAACAATATACTAGGTCGCTC 59.417 42.308 0.00 0.00 0.00 5.03
3255 3889 6.264744 AGCTAAACAATATACTAGGTCGCTCA 59.735 38.462 0.00 0.00 0.00 4.26
3257 3891 7.096147 GCTAAACAATATACTAGGTCGCTCAAC 60.096 40.741 0.00 0.00 0.00 3.18
3258 3892 4.856664 ACAATATACTAGGTCGCTCAACG 58.143 43.478 0.00 0.00 45.62 4.10
3260 3894 0.384669 ATACTAGGTCGCTCAACGCC 59.615 55.000 0.00 0.00 43.23 5.68
3261 3895 0.961857 TACTAGGTCGCTCAACGCCA 60.962 55.000 0.00 0.00 43.23 5.69
3262 3896 1.080093 CTAGGTCGCTCAACGCCAA 60.080 57.895 0.00 0.00 43.23 4.52
3263 3897 0.460284 CTAGGTCGCTCAACGCCAAT 60.460 55.000 0.00 0.00 43.23 3.16
3264 3898 0.739462 TAGGTCGCTCAACGCCAATG 60.739 55.000 0.00 0.00 43.23 2.82
3265 3899 2.480555 GTCGCTCAACGCCAATGG 59.519 61.111 0.00 0.00 43.23 3.16
3266 3900 3.430862 TCGCTCAACGCCAATGGC 61.431 61.111 15.52 15.52 46.75 4.40
3279 3913 2.301346 CCAATGGCATTCTGGTACTCC 58.699 52.381 10.36 0.00 0.00 3.85
3280 3914 2.301346 CAATGGCATTCTGGTACTCCC 58.699 52.381 10.36 0.00 0.00 4.30
3281 3915 1.898863 ATGGCATTCTGGTACTCCCT 58.101 50.000 0.00 0.00 0.00 4.20
3282 3916 1.204146 TGGCATTCTGGTACTCCCTC 58.796 55.000 0.00 0.00 0.00 4.30
3283 3917 0.470341 GGCATTCTGGTACTCCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3284 3918 0.105039 GCATTCTGGTACTCCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
3285 3919 1.776662 CATTCTGGTACTCCCTCCGA 58.223 55.000 0.00 0.00 0.00 4.55
3286 3920 2.320781 CATTCTGGTACTCCCTCCGAT 58.679 52.381 0.00 0.00 0.00 4.18
3287 3921 2.068834 TTCTGGTACTCCCTCCGATC 57.931 55.000 0.00 0.00 0.00 3.69
3288 3922 0.185416 TCTGGTACTCCCTCCGATCC 59.815 60.000 0.00 0.00 0.00 3.36
3289 3923 1.152819 TGGTACTCCCTCCGATCCG 60.153 63.158 0.00 0.00 0.00 4.18
3290 3924 1.150081 GGTACTCCCTCCGATCCGA 59.850 63.158 0.00 0.00 0.00 4.55
3291 3925 0.466922 GGTACTCCCTCCGATCCGAA 60.467 60.000 0.00 0.00 0.00 4.30
3292 3926 1.618487 GTACTCCCTCCGATCCGAAT 58.382 55.000 0.00 0.00 0.00 3.34
3293 3927 1.962100 GTACTCCCTCCGATCCGAATT 59.038 52.381 0.00 0.00 0.00 2.17
3294 3928 0.753262 ACTCCCTCCGATCCGAATTG 59.247 55.000 0.00 0.00 0.00 2.32
3295 3929 1.040646 CTCCCTCCGATCCGAATTGA 58.959 55.000 0.00 0.00 0.00 2.57
3296 3930 1.620819 CTCCCTCCGATCCGAATTGAT 59.379 52.381 0.00 0.00 0.00 2.57
3297 3931 2.037772 CTCCCTCCGATCCGAATTGATT 59.962 50.000 0.00 0.00 0.00 2.57
3298 3932 2.146342 CCCTCCGATCCGAATTGATTG 58.854 52.381 0.00 0.00 0.00 2.67
3299 3933 2.224281 CCCTCCGATCCGAATTGATTGA 60.224 50.000 0.00 0.00 0.00 2.57
3300 3934 3.557898 CCCTCCGATCCGAATTGATTGAT 60.558 47.826 0.00 0.00 0.00 2.57
3301 3935 3.434641 CCTCCGATCCGAATTGATTGATG 59.565 47.826 0.00 0.00 0.00 3.07
3302 3936 2.807967 TCCGATCCGAATTGATTGATGC 59.192 45.455 0.00 0.00 0.00 3.91
3303 3937 2.549329 CCGATCCGAATTGATTGATGCA 59.451 45.455 0.00 0.00 0.00 3.96
3304 3938 3.364664 CCGATCCGAATTGATTGATGCAG 60.365 47.826 0.00 0.00 0.00 4.41
3305 3939 3.562505 GATCCGAATTGATTGATGCAGC 58.437 45.455 0.00 0.00 0.00 5.25
3306 3940 1.677576 TCCGAATTGATTGATGCAGCC 59.322 47.619 0.00 0.00 0.00 4.85
3307 3941 1.679680 CCGAATTGATTGATGCAGCCT 59.320 47.619 0.00 0.00 0.00 4.58
3308 3942 2.287427 CCGAATTGATTGATGCAGCCTC 60.287 50.000 0.00 0.00 0.00 4.70
3309 3943 2.617308 CGAATTGATTGATGCAGCCTCT 59.383 45.455 0.00 0.00 0.00 3.69
3310 3944 3.811497 CGAATTGATTGATGCAGCCTCTA 59.189 43.478 0.00 0.00 0.00 2.43
3311 3945 4.454847 CGAATTGATTGATGCAGCCTCTAT 59.545 41.667 0.00 0.00 0.00 1.98
3312 3946 5.390673 CGAATTGATTGATGCAGCCTCTATC 60.391 44.000 12.91 12.91 0.00 2.08
3313 3947 3.413846 TGATTGATGCAGCCTCTATCC 57.586 47.619 15.78 3.52 0.00 2.59
3314 3948 2.707257 TGATTGATGCAGCCTCTATCCA 59.293 45.455 15.78 5.44 0.00 3.41
3315 3949 3.136992 TGATTGATGCAGCCTCTATCCAA 59.863 43.478 15.78 0.72 0.00 3.53
3316 3950 2.627515 TGATGCAGCCTCTATCCAAC 57.372 50.000 0.00 0.00 0.00 3.77
3317 3951 1.839354 TGATGCAGCCTCTATCCAACA 59.161 47.619 0.00 0.00 0.00 3.33
3318 3952 2.440627 TGATGCAGCCTCTATCCAACAT 59.559 45.455 0.00 0.00 0.00 2.71
3319 3953 3.117776 TGATGCAGCCTCTATCCAACATT 60.118 43.478 0.00 0.00 0.00 2.71
3320 3954 2.646930 TGCAGCCTCTATCCAACATTG 58.353 47.619 0.00 0.00 0.00 2.82
3321 3955 2.025981 TGCAGCCTCTATCCAACATTGT 60.026 45.455 0.00 0.00 0.00 2.71
3322 3956 3.199727 TGCAGCCTCTATCCAACATTGTA 59.800 43.478 0.00 0.00 0.00 2.41
3323 3957 4.141413 TGCAGCCTCTATCCAACATTGTAT 60.141 41.667 0.00 0.00 0.00 2.29
3324 3958 4.214971 GCAGCCTCTATCCAACATTGTATG 59.785 45.833 0.00 0.00 0.00 2.39
3325 3959 4.758674 CAGCCTCTATCCAACATTGTATGG 59.241 45.833 10.14 10.14 38.09 2.74
3329 3963 8.381906 GCCTCTATCCAACATTGTATGGAGGT 62.382 46.154 22.27 12.20 46.74 3.85
3330 3964 9.752885 GCCTCTATCCAACATTGTATGGAGGTT 62.753 44.444 22.27 11.73 46.74 3.50
3332 3966 4.380843 TCCAACATTGTATGGAGGTTGT 57.619 40.909 13.39 0.00 40.74 3.32
3333 3967 5.506730 TCCAACATTGTATGGAGGTTGTA 57.493 39.130 13.39 0.00 40.74 2.41
3334 3968 6.073447 TCCAACATTGTATGGAGGTTGTAT 57.927 37.500 13.39 0.00 40.74 2.29
3335 3969 7.201702 TCCAACATTGTATGGAGGTTGTATA 57.798 36.000 13.39 0.00 40.74 1.47
3336 3970 7.279615 TCCAACATTGTATGGAGGTTGTATAG 58.720 38.462 13.39 0.00 40.74 1.31
3337 3971 7.126573 TCCAACATTGTATGGAGGTTGTATAGA 59.873 37.037 13.39 0.00 40.74 1.98
3338 3972 7.939039 CCAACATTGTATGGAGGTTGTATAGAT 59.061 37.037 10.66 0.00 39.12 1.98
3339 3973 8.777413 CAACATTGTATGGAGGTTGTATAGATG 58.223 37.037 0.00 0.00 35.37 2.90
3340 3974 6.936900 ACATTGTATGGAGGTTGTATAGATGC 59.063 38.462 0.00 0.00 33.60 3.91
3341 3975 6.747414 TTGTATGGAGGTTGTATAGATGCT 57.253 37.500 0.00 0.00 0.00 3.79
3342 3976 6.101650 TGTATGGAGGTTGTATAGATGCTG 57.898 41.667 0.00 0.00 0.00 4.41
3343 3977 3.475566 TGGAGGTTGTATAGATGCTGC 57.524 47.619 0.00 0.00 0.00 5.25
3344 3978 2.224042 TGGAGGTTGTATAGATGCTGCG 60.224 50.000 0.00 0.00 0.00 5.18
3345 3979 2.224066 GGAGGTTGTATAGATGCTGCGT 60.224 50.000 0.00 0.00 0.00 5.24
3346 3980 3.053455 GAGGTTGTATAGATGCTGCGTC 58.947 50.000 13.90 13.90 0.00 5.19
3347 3981 2.430694 AGGTTGTATAGATGCTGCGTCA 59.569 45.455 22.70 9.99 0.00 4.35
3348 3982 3.118775 AGGTTGTATAGATGCTGCGTCAA 60.119 43.478 22.70 6.72 0.00 3.18
3349 3983 3.809832 GGTTGTATAGATGCTGCGTCAAT 59.190 43.478 22.70 6.73 0.00 2.57
3350 3984 4.273480 GGTTGTATAGATGCTGCGTCAATT 59.727 41.667 22.70 9.89 0.00 2.32
3351 3985 5.220854 GGTTGTATAGATGCTGCGTCAATTT 60.221 40.000 22.70 5.68 0.00 1.82
3352 3986 6.018262 GGTTGTATAGATGCTGCGTCAATTTA 60.018 38.462 22.70 7.69 0.00 1.40
3353 3987 7.307989 GGTTGTATAGATGCTGCGTCAATTTAT 60.308 37.037 22.70 13.74 0.00 1.40
3354 3988 7.728847 TGTATAGATGCTGCGTCAATTTATT 57.271 32.000 22.70 3.93 0.00 1.40
3355 3989 7.796838 TGTATAGATGCTGCGTCAATTTATTC 58.203 34.615 22.70 10.40 0.00 1.75
3356 3990 4.201208 AGATGCTGCGTCAATTTATTCG 57.799 40.909 22.70 0.00 0.00 3.34
3357 3991 2.823196 TGCTGCGTCAATTTATTCGG 57.177 45.000 0.00 0.00 0.00 4.30
3358 3992 1.400142 TGCTGCGTCAATTTATTCGGG 59.600 47.619 0.00 0.00 0.00 5.14
3359 3993 1.400494 GCTGCGTCAATTTATTCGGGT 59.600 47.619 0.00 0.00 0.00 5.28
3360 3994 2.538939 GCTGCGTCAATTTATTCGGGTC 60.539 50.000 0.00 0.00 0.00 4.46
3361 3995 1.661617 TGCGTCAATTTATTCGGGTCG 59.338 47.619 0.00 0.00 0.00 4.79
3362 3996 1.004292 GCGTCAATTTATTCGGGTCGG 60.004 52.381 0.00 0.00 0.00 4.79
3363 3997 2.542597 CGTCAATTTATTCGGGTCGGA 58.457 47.619 0.00 0.00 0.00 4.55
3364 3998 2.538449 CGTCAATTTATTCGGGTCGGAG 59.462 50.000 0.00 0.00 0.00 4.63
3365 3999 3.528532 GTCAATTTATTCGGGTCGGAGT 58.471 45.455 0.00 0.00 0.00 3.85
3366 4000 3.308866 GTCAATTTATTCGGGTCGGAGTG 59.691 47.826 0.00 0.00 0.00 3.51
3367 4001 3.196039 TCAATTTATTCGGGTCGGAGTGA 59.804 43.478 0.00 0.00 0.00 3.41
3371 4005 1.101331 ATTCGGGTCGGAGTGAGTAC 58.899 55.000 0.00 0.00 0.00 2.73
3379 4013 4.868734 GGGTCGGAGTGAGTACTAATTTTG 59.131 45.833 0.00 0.00 37.25 2.44
3386 4020 6.821665 GGAGTGAGTACTAATTTTGGCATGTA 59.178 38.462 0.00 0.00 37.25 2.29
3474 4108 5.620206 TCAGTCAATTGTCACCATGTAACT 58.380 37.500 5.13 0.00 0.00 2.24
3487 4121 7.225538 GTCACCATGTAACTGATAAGGATCTTG 59.774 40.741 0.00 0.00 32.79 3.02
3492 4126 9.039870 CATGTAACTGATAAGGATCTTGTCTTC 57.960 37.037 6.10 0.00 32.79 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.020731 CCATGGAAAAGTTAAAATACAGTAGGT 57.979 33.333 5.56 0.00 0.00 3.08
23 24 7.973944 GCCATGGAAAAGTTAAAATACAGTAGG 59.026 37.037 18.40 0.00 0.00 3.18
24 25 8.739972 AGCCATGGAAAAGTTAAAATACAGTAG 58.260 33.333 18.40 0.00 0.00 2.57
25 26 8.644374 AGCCATGGAAAAGTTAAAATACAGTA 57.356 30.769 18.40 0.00 0.00 2.74
26 27 7.539034 AGCCATGGAAAAGTTAAAATACAGT 57.461 32.000 18.40 0.00 0.00 3.55
31 32 8.482943 GGGTATAAGCCATGGAAAAGTTAAAAT 58.517 33.333 18.40 0.00 35.40 1.82
32 33 7.455008 TGGGTATAAGCCATGGAAAAGTTAAAA 59.545 33.333 18.40 0.00 41.50 1.52
33 34 6.954684 TGGGTATAAGCCATGGAAAAGTTAAA 59.045 34.615 18.40 0.00 41.50 1.52
34 35 6.494952 TGGGTATAAGCCATGGAAAAGTTAA 58.505 36.000 18.40 0.00 41.50 2.01
35 36 6.080969 TGGGTATAAGCCATGGAAAAGTTA 57.919 37.500 18.40 4.74 41.50 2.24
36 37 4.941713 TGGGTATAAGCCATGGAAAAGTT 58.058 39.130 18.40 2.45 41.50 2.66
37 38 4.601406 TGGGTATAAGCCATGGAAAAGT 57.399 40.909 18.40 0.00 41.50 2.66
46 47 1.629353 TGTTTCGGTGGGTATAAGCCA 59.371 47.619 0.00 0.00 44.64 4.75
47 48 2.406596 TGTTTCGGTGGGTATAAGCC 57.593 50.000 0.00 0.00 36.00 4.35
48 49 3.314357 GGATTGTTTCGGTGGGTATAAGC 59.686 47.826 0.00 0.00 0.00 3.09
49 50 4.519213 TGGATTGTTTCGGTGGGTATAAG 58.481 43.478 0.00 0.00 0.00 1.73
50 51 4.571369 TGGATTGTTTCGGTGGGTATAA 57.429 40.909 0.00 0.00 0.00 0.98
51 52 4.781775 ATGGATTGTTTCGGTGGGTATA 57.218 40.909 0.00 0.00 0.00 1.47
52 53 3.662759 ATGGATTGTTTCGGTGGGTAT 57.337 42.857 0.00 0.00 0.00 2.73
53 54 3.520317 ACTATGGATTGTTTCGGTGGGTA 59.480 43.478 0.00 0.00 0.00 3.69
54 55 2.307686 ACTATGGATTGTTTCGGTGGGT 59.692 45.455 0.00 0.00 0.00 4.51
55 56 2.999331 ACTATGGATTGTTTCGGTGGG 58.001 47.619 0.00 0.00 0.00 4.61
56 57 4.981794 GAAACTATGGATTGTTTCGGTGG 58.018 43.478 9.79 0.00 40.59 4.61
61 62 9.474920 TGTTTTGATGAAACTATGGATTGTTTC 57.525 29.630 15.50 15.50 46.25 2.78
62 63 9.829507 TTGTTTTGATGAAACTATGGATTGTTT 57.170 25.926 0.00 0.00 46.25 2.83
63 64 9.480053 CTTGTTTTGATGAAACTATGGATTGTT 57.520 29.630 3.66 0.00 46.25 2.83
64 65 7.599998 GCTTGTTTTGATGAAACTATGGATTGT 59.400 33.333 3.66 0.00 46.25 2.71
65 66 7.599621 TGCTTGTTTTGATGAAACTATGGATTG 59.400 33.333 3.66 0.00 46.25 2.67
66 67 7.669427 TGCTTGTTTTGATGAAACTATGGATT 58.331 30.769 3.66 0.00 46.25 3.01
67 68 7.230849 TGCTTGTTTTGATGAAACTATGGAT 57.769 32.000 3.66 0.00 46.25 3.41
68 69 6.647334 TGCTTGTTTTGATGAAACTATGGA 57.353 33.333 3.66 0.00 46.25 3.41
69 70 7.224362 TGTTTGCTTGTTTTGATGAAACTATGG 59.776 33.333 0.00 0.00 46.25 2.74
70 71 8.129161 TGTTTGCTTGTTTTGATGAAACTATG 57.871 30.769 0.00 0.00 46.25 2.23
71 72 8.715191 TTGTTTGCTTGTTTTGATGAAACTAT 57.285 26.923 0.00 0.00 46.25 2.12
72 73 8.602328 CATTGTTTGCTTGTTTTGATGAAACTA 58.398 29.630 0.00 0.00 46.25 2.24
73 74 7.465989 CATTGTTTGCTTGTTTTGATGAAACT 58.534 30.769 0.00 0.00 46.25 2.66
74 75 7.653523 CATTGTTTGCTTGTTTTGATGAAAC 57.346 32.000 0.00 0.00 46.28 2.78
126 127 4.392940 CCTTGACTTCCACAGATTGTTCT 58.607 43.478 0.00 0.00 0.00 3.01
127 128 3.057946 GCCTTGACTTCCACAGATTGTTC 60.058 47.826 0.00 0.00 0.00 3.18
128 129 2.887152 GCCTTGACTTCCACAGATTGTT 59.113 45.455 0.00 0.00 0.00 2.83
129 130 2.158623 TGCCTTGACTTCCACAGATTGT 60.159 45.455 0.00 0.00 0.00 2.71
130 131 2.507484 TGCCTTGACTTCCACAGATTG 58.493 47.619 0.00 0.00 0.00 2.67
131 132 2.957402 TGCCTTGACTTCCACAGATT 57.043 45.000 0.00 0.00 0.00 2.40
132 133 2.957402 TTGCCTTGACTTCCACAGAT 57.043 45.000 0.00 0.00 0.00 2.90
133 134 2.727123 TTTGCCTTGACTTCCACAGA 57.273 45.000 0.00 0.00 0.00 3.41
134 135 3.799281 TTTTTGCCTTGACTTCCACAG 57.201 42.857 0.00 0.00 0.00 3.66
200 208 5.869888 AGTCGTGGCAAAACAAACAAAATTA 59.130 32.000 0.00 0.00 0.00 1.40
332 347 5.206587 AGCTCAAATGCTCCCTAATTGAAT 58.793 37.500 0.00 0.00 39.34 2.57
366 381 2.811431 TGAGGGCTTACGACACAAATTG 59.189 45.455 0.00 0.00 0.00 2.32
368 383 2.851263 TGAGGGCTTACGACACAAAT 57.149 45.000 0.00 0.00 0.00 2.32
373 388 1.626321 TGGATTTGAGGGCTTACGACA 59.374 47.619 0.00 0.00 0.00 4.35
374 389 2.396590 TGGATTTGAGGGCTTACGAC 57.603 50.000 0.00 0.00 0.00 4.34
396 411 7.494298 GTGACAAGGGTTGTGTTGAATATTTTT 59.506 33.333 0.00 0.00 45.52 1.94
526 542 6.455647 TGAACGCTCCATATACAATAGAAGG 58.544 40.000 0.00 0.00 0.00 3.46
532 548 6.147821 GCAATACTGAACGCTCCATATACAAT 59.852 38.462 0.00 0.00 0.00 2.71
548 564 4.261280 CGCCATCAATGAATGCAATACTGA 60.261 41.667 7.86 0.00 0.00 3.41
553 569 3.530265 AACGCCATCAATGAATGCAAT 57.470 38.095 7.86 0.00 0.00 3.56
566 583 1.533731 CACCACGAAAACTAACGCCAT 59.466 47.619 0.00 0.00 0.00 4.40
602 620 0.250989 GGAAACGTTGGGGATGGACA 60.251 55.000 0.00 0.00 0.00 4.02
638 816 8.902806 ACAATCATGCGGAAGAATTCTATAAAA 58.097 29.630 8.75 0.00 46.56 1.52
669 848 3.935203 CGTATTGTGAGGAAGCTCAACAT 59.065 43.478 0.00 0.00 34.88 2.71
765 950 6.484364 TCATGAAGGAGATATAGCAACACA 57.516 37.500 0.00 0.00 0.00 3.72
806 995 7.282585 TGTAATATTATGCTTGAGCCAGTCTT 58.717 34.615 0.00 0.00 41.18 3.01
903 1092 3.314635 GCGATGAATCCATTTCTTCTGCT 59.685 43.478 0.00 0.00 36.71 4.24
940 1129 2.939022 GAGTGTGCGGTGTGCTTC 59.061 61.111 0.00 0.00 46.63 3.86
1062 1569 4.111016 CTGTACGCAGTCGCCGGA 62.111 66.667 5.05 0.00 43.93 5.14
1071 1578 4.155733 CCCATCGCCCTGTACGCA 62.156 66.667 0.00 0.00 0.00 5.24
1075 1582 1.002403 TCTTCCCCATCGCCCTGTA 59.998 57.895 0.00 0.00 0.00 2.74
1098 1605 2.754658 TTCTCCTCCTCCGTCGGC 60.755 66.667 6.34 0.00 0.00 5.54
1099 1606 2.122167 CCTTCTCCTCCTCCGTCGG 61.122 68.421 4.39 4.39 0.00 4.79
1197 1704 1.706575 CTCCTCCTCTTCCTCCCCA 59.293 63.158 0.00 0.00 0.00 4.96
1206 1713 1.522900 CTCTCTCCTCCTCCTCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
1207 1714 0.178990 GCTCTCTCCTCCTCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
1208 1715 1.655114 GGCTCTCTCCTCCTCCTCCT 61.655 65.000 0.00 0.00 0.00 3.69
1209 1716 1.152546 GGCTCTCTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1210 1717 0.755327 GTGGCTCTCTCCTCCTCCTC 60.755 65.000 0.00 0.00 0.00 3.71
1211 1718 1.309688 GTGGCTCTCTCCTCCTCCT 59.690 63.158 0.00 0.00 0.00 3.69
1212 1719 2.124693 CGTGGCTCTCTCCTCCTCC 61.125 68.421 0.00 0.00 0.00 4.30
1213 1720 2.124693 CCGTGGCTCTCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
1214 1721 2.043450 CCGTGGCTCTCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
1238 1748 2.094700 GCCAACCGATTTTCTCCCTTTC 60.095 50.000 0.00 0.00 0.00 2.62
1256 1766 4.161295 CCCTCTTCGCCGATGCCA 62.161 66.667 0.00 0.00 0.00 4.92
1377 1887 2.203972 TAAACCGTCGTCGCTCCCTG 62.204 60.000 0.00 0.00 35.54 4.45
1388 1898 2.159324 CCCTTCGTACTCCTAAACCGTC 60.159 54.545 0.00 0.00 0.00 4.79
1392 1902 4.525912 TTGTCCCTTCGTACTCCTAAAC 57.474 45.455 0.00 0.00 0.00 2.01
1398 1908 1.675116 GGCCTTTGTCCCTTCGTACTC 60.675 57.143 0.00 0.00 0.00 2.59
1401 1911 1.294138 CGGCCTTTGTCCCTTCGTA 59.706 57.895 0.00 0.00 0.00 3.43
1414 1924 3.684628 TCCCTTCTCCTCCGGCCT 61.685 66.667 0.00 0.00 0.00 5.19
1554 2064 2.443952 ATCATGTCGGCGAGGGGA 60.444 61.111 11.20 8.42 0.00 4.81
1586 2096 0.610174 TATCTGGATGATGCCTCCGC 59.390 55.000 0.00 0.00 36.65 5.54
1603 2113 2.266689 GGCGTCCACGTTGGGTAT 59.733 61.111 0.36 0.00 42.22 2.73
1681 2191 3.610669 CTCCTCGGATGCCTCGGG 61.611 72.222 0.00 0.00 0.00 5.14
1706 2249 4.021925 GCTTGCGGTCCCACTCCT 62.022 66.667 0.00 0.00 0.00 3.69
1762 2305 2.167861 GGAACTGAGCGGCGATGAC 61.168 63.158 12.98 0.00 0.00 3.06
1774 2317 1.340405 CCCCTTGATGTGGAGGAACTG 60.340 57.143 0.00 0.00 41.55 3.16
1829 2372 2.821969 GTCTTGCAATTGACCATGTCCT 59.178 45.455 10.34 0.00 0.00 3.85
1853 2396 2.665008 TATCTGGTGCATCTGCCCGC 62.665 60.000 0.00 0.00 41.18 6.13
1876 2419 1.830279 CATGTGCACATGTCTTCCCT 58.170 50.000 39.68 14.14 46.40 4.20
1911 2454 1.340114 GCCGTCCCCTTCTCAGAAAAT 60.340 52.381 0.00 0.00 0.00 1.82
1950 2496 0.109597 TCTTAAACCGTCGTCGCTCC 60.110 55.000 0.00 0.00 35.54 4.70
1951 2497 1.135859 TCTCTTAAACCGTCGTCGCTC 60.136 52.381 0.00 0.00 35.54 5.03
1952 2498 0.877071 TCTCTTAAACCGTCGTCGCT 59.123 50.000 0.00 0.00 35.54 4.93
1954 2500 1.981533 GGTTCTCTTAAACCGTCGTCG 59.018 52.381 0.00 0.00 39.40 5.12
1962 2508 5.499047 CGTTGACACTTGGTTCTCTTAAAC 58.501 41.667 0.00 0.00 0.00 2.01
1963 2509 4.573201 CCGTTGACACTTGGTTCTCTTAAA 59.427 41.667 0.00 0.00 0.00 1.52
1964 2510 4.124238 CCGTTGACACTTGGTTCTCTTAA 58.876 43.478 0.00 0.00 0.00 1.85
1965 2511 3.724374 CCGTTGACACTTGGTTCTCTTA 58.276 45.455 0.00 0.00 0.00 2.10
1966 2512 2.561569 CCGTTGACACTTGGTTCTCTT 58.438 47.619 0.00 0.00 0.00 2.85
1967 2513 1.810412 GCCGTTGACACTTGGTTCTCT 60.810 52.381 0.00 0.00 0.00 3.10
1975 2521 2.030562 CTCCGGCCGTTGACACTT 59.969 61.111 26.12 0.00 0.00 3.16
1976 2522 2.436087 CTTCTCCGGCCGTTGACACT 62.436 60.000 26.12 0.00 0.00 3.55
1977 2523 2.027625 CTTCTCCGGCCGTTGACAC 61.028 63.158 26.12 0.00 0.00 3.67
1978 2524 1.750341 TTCTTCTCCGGCCGTTGACA 61.750 55.000 26.12 7.77 0.00 3.58
2041 2587 3.037549 TGGCCCTGAAGAAAAATGTGTT 58.962 40.909 0.00 0.00 0.00 3.32
2084 2630 1.763655 AGCATCCCATCCGAGCTCA 60.764 57.895 15.40 0.00 0.00 4.26
2173 2719 1.004440 GTAGCGGGATGATGCCTCC 60.004 63.158 0.42 0.00 0.00 4.30
2174 2720 1.004440 GGTAGCGGGATGATGCCTC 60.004 63.158 0.42 0.00 35.64 4.70
2186 2732 2.807895 CGTCCACGTTGGGTAGCG 60.808 66.667 4.52 0.00 38.32 4.26
2219 2765 1.616374 TGTTGCAGTACTCGATCACCA 59.384 47.619 0.00 0.00 0.00 4.17
2257 2803 3.959975 GACGCGGCTGTTGGCAAA 61.960 61.111 12.47 0.00 44.01 3.68
2276 2837 3.997400 CTGCTGCTGCTGCCCTCAT 62.997 63.158 25.44 0.00 40.48 2.90
2312 2873 2.364842 ACTCCATCAGCGCCTCCT 60.365 61.111 2.29 0.00 0.00 3.69
2313 2874 2.202987 CACTCCATCAGCGCCTCC 60.203 66.667 2.29 0.00 0.00 4.30
2324 2885 4.329545 GCTTGCGGTCCCACTCCA 62.330 66.667 0.00 0.00 0.00 3.86
2382 2943 2.044946 AGGAAGTTGGCGGCCATC 60.045 61.111 24.49 21.96 31.53 3.51
2447 3008 0.036388 CACGCTGTACCCCTTGACAT 60.036 55.000 0.00 0.00 0.00 3.06
2448 3009 1.369692 CACGCTGTACCCCTTGACA 59.630 57.895 0.00 0.00 0.00 3.58
2449 3010 1.375523 CCACGCTGTACCCCTTGAC 60.376 63.158 0.00 0.00 0.00 3.18
2457 3018 1.424493 GCATCTGCTCCACGCTGTAC 61.424 60.000 0.00 0.00 40.11 2.90
2458 3019 1.153568 GCATCTGCTCCACGCTGTA 60.154 57.895 0.00 0.00 40.11 2.74
2460 3021 3.561213 CGCATCTGCTCCACGCTG 61.561 66.667 0.09 0.00 40.11 5.18
2474 3035 4.733371 TGCCGAACATCTCGCGCA 62.733 61.111 8.75 6.31 46.71 6.09
2498 3059 0.961358 CTCCTCCTCGGTGAAGTCGT 60.961 60.000 0.00 0.00 0.00 4.34
2565 3129 2.514458 ATGGCTTCGAACAAAGGGAT 57.486 45.000 0.00 0.00 0.00 3.85
2572 3136 0.516877 CGCAGAAATGGCTTCGAACA 59.483 50.000 0.00 0.00 39.22 3.18
2596 3161 4.161189 CCACCAGATACAGACAGTGAGATT 59.839 45.833 0.00 0.00 0.00 2.40
2673 3238 7.418378 ACCCCCATAATCTTTGACAAATTCTA 58.582 34.615 0.05 0.00 0.00 2.10
2676 3241 7.125659 CCTTACCCCCATAATCTTTGACAAATT 59.874 37.037 0.05 0.00 0.00 1.82
2677 3242 6.611236 CCTTACCCCCATAATCTTTGACAAAT 59.389 38.462 0.05 0.00 0.00 2.32
2693 3258 3.353557 GAATCAAGTTGACCTTACCCCC 58.646 50.000 7.96 0.00 0.00 5.40
2696 3261 5.167303 AGAGGAATCAAGTTGACCTTACC 57.833 43.478 14.48 10.55 0.00 2.85
2740 3329 6.582437 AGCTTTAAACACAAATTTGTTCCG 57.418 33.333 21.10 12.66 38.82 4.30
2744 3333 8.998377 AGTTCAAAGCTTTAAACACAAATTTGT 58.002 25.926 23.92 18.13 43.36 2.83
2782 3371 5.013079 TGTCAGGTTAACTCATTCATCCACT 59.987 40.000 5.42 0.00 0.00 4.00
2783 3372 5.245531 TGTCAGGTTAACTCATTCATCCAC 58.754 41.667 5.42 0.00 0.00 4.02
2784 3373 5.497464 TGTCAGGTTAACTCATTCATCCA 57.503 39.130 5.42 0.00 0.00 3.41
2810 3408 1.832998 GCAATTCATGGGGTTGGTGAT 59.167 47.619 0.00 0.00 0.00 3.06
2817 3415 2.173519 CAACAGAGCAATTCATGGGGT 58.826 47.619 0.00 0.00 0.00 4.95
2830 3428 6.873076 AGAGTAGCTGAAGAAATTCAACAGAG 59.127 38.462 18.17 0.27 0.00 3.35
2831 3429 6.763355 AGAGTAGCTGAAGAAATTCAACAGA 58.237 36.000 18.17 1.95 0.00 3.41
2878 3476 6.096987 CCAAGCAGATCAAGAGTAGTAGGTAA 59.903 42.308 0.00 0.00 0.00 2.85
2879 3477 5.594725 CCAAGCAGATCAAGAGTAGTAGGTA 59.405 44.000 0.00 0.00 0.00 3.08
2880 3478 4.404073 CCAAGCAGATCAAGAGTAGTAGGT 59.596 45.833 0.00 0.00 0.00 3.08
2881 3479 4.646945 TCCAAGCAGATCAAGAGTAGTAGG 59.353 45.833 0.00 0.00 0.00 3.18
2882 3480 5.843673 TCCAAGCAGATCAAGAGTAGTAG 57.156 43.478 0.00 0.00 0.00 2.57
2888 3486 5.277393 CGAATTCATCCAAGCAGATCAAGAG 60.277 44.000 6.22 0.00 0.00 2.85
2904 3502 8.725148 GCATTATGAGGAAACTATCGAATTCAT 58.275 33.333 6.22 1.32 44.43 2.57
2911 3509 6.791887 ACATGCATTATGAGGAAACTATCG 57.208 37.500 0.00 0.00 44.43 2.92
2914 3512 8.978874 ACATAACATGCATTATGAGGAAACTA 57.021 30.769 21.39 0.00 42.73 2.24
2925 3523 3.461458 TGGGGAGGACATAACATGCATTA 59.539 43.478 0.00 0.00 0.00 1.90
2941 3539 1.969923 TGGTTGCAAGAAAATGGGGAG 59.030 47.619 0.00 0.00 0.00 4.30
2943 3541 1.608801 GCTGGTTGCAAGAAAATGGGG 60.609 52.381 0.00 0.00 42.31 4.96
2993 3596 3.435327 TCACCGCAACTTTATACAAGCAG 59.565 43.478 0.00 0.00 0.00 4.24
3011 3614 4.992688 TCGCCACATTTCAAATATTCACC 58.007 39.130 0.00 0.00 0.00 4.02
3028 3631 1.675714 GGATGTGTCATTCACTCGCCA 60.676 52.381 0.00 0.00 46.27 5.69
3029 3632 1.009829 GGATGTGTCATTCACTCGCC 58.990 55.000 0.00 0.00 46.27 5.54
3030 3633 1.662629 CAGGATGTGTCATTCACTCGC 59.337 52.381 0.00 0.00 46.27 5.03
3031 3634 3.236632 TCAGGATGTGTCATTCACTCG 57.763 47.619 0.00 0.00 46.27 4.18
3057 3668 5.565592 TTCATGGCATTAATCAGTGACAC 57.434 39.130 0.00 0.00 35.92 3.67
3070 3681 1.140452 ACAGAGAGCGATTCATGGCAT 59.860 47.619 0.00 0.00 33.65 4.40
3071 3682 0.538584 ACAGAGAGCGATTCATGGCA 59.461 50.000 0.00 0.00 33.65 4.92
3073 3684 2.159128 ACAGACAGAGAGCGATTCATGG 60.159 50.000 0.00 0.00 0.00 3.66
3074 3685 3.114809 GACAGACAGAGAGCGATTCATG 58.885 50.000 0.00 0.00 0.00 3.07
3076 3687 2.163211 CAGACAGACAGAGAGCGATTCA 59.837 50.000 0.00 0.00 0.00 2.57
3077 3688 2.163412 ACAGACAGACAGAGAGCGATTC 59.837 50.000 0.00 0.00 0.00 2.52
3079 3690 1.472082 CACAGACAGACAGAGAGCGAT 59.528 52.381 0.00 0.00 0.00 4.58
3080 3691 0.877743 CACAGACAGACAGAGAGCGA 59.122 55.000 0.00 0.00 0.00 4.93
3081 3692 0.595588 ACACAGACAGACAGAGAGCG 59.404 55.000 0.00 0.00 0.00 5.03
3082 3693 2.402305 CAACACAGACAGACAGAGAGC 58.598 52.381 0.00 0.00 0.00 4.09
3083 3694 2.625314 TCCAACACAGACAGACAGAGAG 59.375 50.000 0.00 0.00 0.00 3.20
3085 3696 2.363680 AGTCCAACACAGACAGACAGAG 59.636 50.000 0.00 0.00 36.68 3.35
3086 3697 2.388735 AGTCCAACACAGACAGACAGA 58.611 47.619 0.00 0.00 36.68 3.41
3089 3700 5.140747 AGAATAGTCCAACACAGACAGAC 57.859 43.478 0.00 0.00 36.68 3.51
3114 3725 6.395426 AAGAAAACACTTGATGCTGAATCA 57.605 33.333 0.00 0.00 43.79 2.57
3115 3726 6.364435 GGAAAGAAAACACTTGATGCTGAATC 59.636 38.462 0.00 0.00 35.67 2.52
3116 3727 6.218746 GGAAAGAAAACACTTGATGCTGAAT 58.781 36.000 0.00 0.00 0.00 2.57
3118 3729 4.037923 GGGAAAGAAAACACTTGATGCTGA 59.962 41.667 0.00 0.00 0.00 4.26
3119 3730 4.301628 GGGAAAGAAAACACTTGATGCTG 58.698 43.478 0.00 0.00 0.00 4.41
3120 3731 3.321968 GGGGAAAGAAAACACTTGATGCT 59.678 43.478 0.00 0.00 0.00 3.79
3121 3732 3.321968 AGGGGAAAGAAAACACTTGATGC 59.678 43.478 0.00 0.00 0.00 3.91
3122 3733 6.648879 TTAGGGGAAAGAAAACACTTGATG 57.351 37.500 0.00 0.00 0.00 3.07
3123 3734 8.170730 AGTATTAGGGGAAAGAAAACACTTGAT 58.829 33.333 0.00 0.00 0.00 2.57
3124 3735 7.523415 AGTATTAGGGGAAAGAAAACACTTGA 58.477 34.615 0.00 0.00 0.00 3.02
3125 3736 7.665974 AGAGTATTAGGGGAAAGAAAACACTTG 59.334 37.037 0.00 0.00 0.00 3.16
3126 3737 7.756614 AGAGTATTAGGGGAAAGAAAACACTT 58.243 34.615 0.00 0.00 0.00 3.16
3127 3738 7.331089 AGAGTATTAGGGGAAAGAAAACACT 57.669 36.000 0.00 0.00 0.00 3.55
3128 3739 7.664318 TCAAGAGTATTAGGGGAAAGAAAACAC 59.336 37.037 0.00 0.00 0.00 3.32
3129 3740 7.751646 TCAAGAGTATTAGGGGAAAGAAAACA 58.248 34.615 0.00 0.00 0.00 2.83
3130 3741 8.678199 CATCAAGAGTATTAGGGGAAAGAAAAC 58.322 37.037 0.00 0.00 0.00 2.43
3131 3742 8.611257 TCATCAAGAGTATTAGGGGAAAGAAAA 58.389 33.333 0.00 0.00 0.00 2.29
3132 3743 8.158025 TCATCAAGAGTATTAGGGGAAAGAAA 57.842 34.615 0.00 0.00 0.00 2.52
3133 3744 7.635971 GCTCATCAAGAGTATTAGGGGAAAGAA 60.636 40.741 0.00 0.00 46.47 2.52
3134 3745 6.183361 GCTCATCAAGAGTATTAGGGGAAAGA 60.183 42.308 0.00 0.00 46.47 2.52
3135 3746 5.994668 GCTCATCAAGAGTATTAGGGGAAAG 59.005 44.000 0.00 0.00 46.47 2.62
3136 3747 5.667626 AGCTCATCAAGAGTATTAGGGGAAA 59.332 40.000 0.00 0.00 46.47 3.13
3137 3748 5.070981 CAGCTCATCAAGAGTATTAGGGGAA 59.929 44.000 0.00 0.00 46.47 3.97
3138 3749 4.590647 CAGCTCATCAAGAGTATTAGGGGA 59.409 45.833 0.00 0.00 46.47 4.81
3139 3750 4.262808 CCAGCTCATCAAGAGTATTAGGGG 60.263 50.000 0.00 0.00 46.47 4.79
3140 3751 4.802248 GCCAGCTCATCAAGAGTATTAGGG 60.802 50.000 0.00 0.00 46.47 3.53
3141 3752 4.202295 TGCCAGCTCATCAAGAGTATTAGG 60.202 45.833 0.00 0.00 46.47 2.69
3142 3753 4.953667 TGCCAGCTCATCAAGAGTATTAG 58.046 43.478 0.00 0.00 46.47 1.73
3143 3754 5.070847 TCATGCCAGCTCATCAAGAGTATTA 59.929 40.000 0.00 0.00 46.47 0.98
3144 3755 3.920231 TGCCAGCTCATCAAGAGTATT 57.080 42.857 0.00 0.00 46.47 1.89
3145 3756 3.390311 TCATGCCAGCTCATCAAGAGTAT 59.610 43.478 0.00 0.00 46.47 2.12
3146 3757 2.767960 TCATGCCAGCTCATCAAGAGTA 59.232 45.455 0.00 0.00 46.47 2.59
3147 3758 1.558294 TCATGCCAGCTCATCAAGAGT 59.442 47.619 0.00 0.00 46.47 3.24
3149 3760 1.558294 ACTCATGCCAGCTCATCAAGA 59.442 47.619 0.00 0.00 0.00 3.02
3150 3761 1.671328 CACTCATGCCAGCTCATCAAG 59.329 52.381 0.00 0.00 0.00 3.02
3151 3762 1.279846 TCACTCATGCCAGCTCATCAA 59.720 47.619 0.00 0.00 0.00 2.57
3152 3763 0.906775 TCACTCATGCCAGCTCATCA 59.093 50.000 0.00 0.00 0.00 3.07
3153 3764 2.034104 TTCACTCATGCCAGCTCATC 57.966 50.000 0.00 0.00 0.00 2.92
3154 3765 2.730934 ATTCACTCATGCCAGCTCAT 57.269 45.000 0.00 0.00 0.00 2.90
3155 3766 2.744166 GCTATTCACTCATGCCAGCTCA 60.744 50.000 0.00 0.00 0.00 4.26
3156 3767 1.872313 GCTATTCACTCATGCCAGCTC 59.128 52.381 0.00 0.00 0.00 4.09
3157 3768 1.211212 TGCTATTCACTCATGCCAGCT 59.789 47.619 0.00 0.00 0.00 4.24
3158 3769 1.671979 TGCTATTCACTCATGCCAGC 58.328 50.000 0.00 0.00 0.00 4.85
3159 3770 6.404708 AGTATATGCTATTCACTCATGCCAG 58.595 40.000 0.00 0.00 0.00 4.85
3160 3771 6.364568 AGTATATGCTATTCACTCATGCCA 57.635 37.500 0.00 0.00 0.00 4.92
3161 3772 6.758886 GGTAGTATATGCTATTCACTCATGCC 59.241 42.308 3.71 0.00 0.00 4.40
3187 3798 4.407621 ACACAATCAATTGCATGGGATCAT 59.592 37.500 16.44 0.00 41.38 2.45
3188 3799 3.770388 ACACAATCAATTGCATGGGATCA 59.230 39.130 16.44 0.00 41.38 2.92
3189 3800 4.116961 CACACAATCAATTGCATGGGATC 58.883 43.478 16.44 0.00 41.38 3.36
3190 3801 3.516300 ACACACAATCAATTGCATGGGAT 59.484 39.130 16.44 4.62 41.38 3.85
3191 3802 2.898612 ACACACAATCAATTGCATGGGA 59.101 40.909 16.44 0.00 41.38 4.37
3230 3864 6.264744 TGAGCGACCTAGTATATTGTTTAGCT 59.735 38.462 0.00 0.00 0.00 3.32
3234 3868 5.747197 CGTTGAGCGACCTAGTATATTGTTT 59.253 40.000 0.00 0.00 44.77 2.83
3237 3871 3.669122 GCGTTGAGCGACCTAGTATATTG 59.331 47.826 0.00 0.00 44.77 1.90
3258 3892 3.589577 GGAGTACCAGAATGCCATTGGC 61.590 54.545 21.12 21.12 41.92 4.52
3260 3894 2.092212 AGGGAGTACCAGAATGCCATTG 60.092 50.000 0.00 0.00 43.89 2.82
3261 3895 2.173569 GAGGGAGTACCAGAATGCCATT 59.826 50.000 0.00 0.00 43.89 3.16
3262 3896 1.771255 GAGGGAGTACCAGAATGCCAT 59.229 52.381 0.00 0.00 43.89 4.40
3263 3897 1.204146 GAGGGAGTACCAGAATGCCA 58.796 55.000 0.00 0.00 43.89 4.92
3264 3898 0.470341 GGAGGGAGTACCAGAATGCC 59.530 60.000 0.00 0.00 43.89 4.40
3265 3899 0.105039 CGGAGGGAGTACCAGAATGC 59.895 60.000 0.00 0.00 43.89 3.56
3266 3900 1.776662 TCGGAGGGAGTACCAGAATG 58.223 55.000 0.00 0.00 43.89 2.67
3267 3901 2.599677 GATCGGAGGGAGTACCAGAAT 58.400 52.381 0.00 0.00 43.89 2.40
3268 3902 1.411216 GGATCGGAGGGAGTACCAGAA 60.411 57.143 0.00 0.00 43.89 3.02
3269 3903 0.185416 GGATCGGAGGGAGTACCAGA 59.815 60.000 0.00 0.00 43.89 3.86
3270 3904 1.173444 CGGATCGGAGGGAGTACCAG 61.173 65.000 0.00 0.00 43.89 4.00
3271 3905 1.152819 CGGATCGGAGGGAGTACCA 60.153 63.158 0.00 0.00 43.89 3.25
3272 3906 0.466922 TTCGGATCGGAGGGAGTACC 60.467 60.000 2.99 0.00 40.67 3.34
3273 3907 1.618487 ATTCGGATCGGAGGGAGTAC 58.382 55.000 2.99 0.00 0.00 2.73
3274 3908 1.961394 CAATTCGGATCGGAGGGAGTA 59.039 52.381 2.99 0.00 0.00 2.59
3275 3909 0.753262 CAATTCGGATCGGAGGGAGT 59.247 55.000 2.99 0.00 0.00 3.85
3276 3910 1.040646 TCAATTCGGATCGGAGGGAG 58.959 55.000 2.99 0.00 0.00 4.30
3277 3911 1.717032 ATCAATTCGGATCGGAGGGA 58.283 50.000 2.99 3.63 0.00 4.20
3278 3912 2.146342 CAATCAATTCGGATCGGAGGG 58.854 52.381 2.99 0.00 0.00 4.30
3279 3913 3.111853 TCAATCAATTCGGATCGGAGG 57.888 47.619 2.99 0.00 0.00 4.30
3280 3914 3.120408 GCATCAATCAATTCGGATCGGAG 60.120 47.826 2.99 0.00 0.00 4.63
3281 3915 2.807967 GCATCAATCAATTCGGATCGGA 59.192 45.455 0.00 0.00 0.00 4.55
3282 3916 2.549329 TGCATCAATCAATTCGGATCGG 59.451 45.455 0.00 0.00 0.00 4.18
3283 3917 3.806958 CTGCATCAATCAATTCGGATCG 58.193 45.455 0.00 0.00 0.00 3.69
3284 3918 3.562505 GCTGCATCAATCAATTCGGATC 58.437 45.455 0.00 0.00 0.00 3.36
3285 3919 2.295349 GGCTGCATCAATCAATTCGGAT 59.705 45.455 0.50 0.00 0.00 4.18
3286 3920 1.677576 GGCTGCATCAATCAATTCGGA 59.322 47.619 0.50 0.00 0.00 4.55
3287 3921 1.679680 AGGCTGCATCAATCAATTCGG 59.320 47.619 0.50 0.00 0.00 4.30
3288 3922 2.617308 AGAGGCTGCATCAATCAATTCG 59.383 45.455 17.19 0.00 0.00 3.34
3289 3923 5.106237 GGATAGAGGCTGCATCAATCAATTC 60.106 44.000 17.19 2.56 0.00 2.17
3290 3924 4.765856 GGATAGAGGCTGCATCAATCAATT 59.234 41.667 17.19 0.00 0.00 2.32
3291 3925 4.202535 TGGATAGAGGCTGCATCAATCAAT 60.203 41.667 17.19 1.90 0.00 2.57
3292 3926 3.136992 TGGATAGAGGCTGCATCAATCAA 59.863 43.478 17.19 0.00 0.00 2.57
3293 3927 2.707257 TGGATAGAGGCTGCATCAATCA 59.293 45.455 17.19 6.35 0.00 2.57
3294 3928 3.413846 TGGATAGAGGCTGCATCAATC 57.586 47.619 17.19 6.43 0.00 2.67
3295 3929 3.117776 TGTTGGATAGAGGCTGCATCAAT 60.118 43.478 17.19 0.00 0.00 2.57
3296 3930 2.239402 TGTTGGATAGAGGCTGCATCAA 59.761 45.455 17.19 0.00 0.00 2.57
3297 3931 1.839354 TGTTGGATAGAGGCTGCATCA 59.161 47.619 17.19 3.11 0.00 3.07
3298 3932 2.627515 TGTTGGATAGAGGCTGCATC 57.372 50.000 6.12 6.12 0.00 3.91
3299 3933 3.220110 CAATGTTGGATAGAGGCTGCAT 58.780 45.455 0.50 0.00 0.00 3.96
3300 3934 2.025981 ACAATGTTGGATAGAGGCTGCA 60.026 45.455 0.50 0.00 0.00 4.41
3301 3935 2.648059 ACAATGTTGGATAGAGGCTGC 58.352 47.619 0.00 0.00 0.00 5.25
3302 3936 4.758674 CCATACAATGTTGGATAGAGGCTG 59.241 45.833 8.30 0.00 34.81 4.85
3303 3937 4.660303 TCCATACAATGTTGGATAGAGGCT 59.340 41.667 11.42 0.00 37.10 4.58
3304 3938 4.973168 TCCATACAATGTTGGATAGAGGC 58.027 43.478 11.42 0.00 37.10 4.70
3305 3939 5.555017 CCTCCATACAATGTTGGATAGAGG 58.445 45.833 15.10 15.10 46.24 3.69
3306 3940 6.179906 ACCTCCATACAATGTTGGATAGAG 57.820 41.667 14.44 6.46 41.09 2.43
3307 3941 6.069673 ACAACCTCCATACAATGTTGGATAGA 60.070 38.462 14.44 0.00 41.09 1.98
3308 3942 6.122277 ACAACCTCCATACAATGTTGGATAG 58.878 40.000 14.44 12.16 41.09 2.08
3309 3943 6.073447 ACAACCTCCATACAATGTTGGATA 57.927 37.500 14.44 0.00 41.09 2.59
3310 3944 4.934356 ACAACCTCCATACAATGTTGGAT 58.066 39.130 14.44 2.78 41.09 3.41
3311 3945 4.380843 ACAACCTCCATACAATGTTGGA 57.619 40.909 13.71 13.71 40.35 3.53
3312 3946 7.279615 TCTATACAACCTCCATACAATGTTGG 58.720 38.462 0.00 0.00 40.35 3.77
3313 3947 8.777413 CATCTATACAACCTCCATACAATGTTG 58.223 37.037 0.00 0.00 41.47 3.33
3314 3948 7.445402 GCATCTATACAACCTCCATACAATGTT 59.555 37.037 0.00 0.00 0.00 2.71
3315 3949 6.936900 GCATCTATACAACCTCCATACAATGT 59.063 38.462 0.00 0.00 0.00 2.71
3316 3950 7.118825 CAGCATCTATACAACCTCCATACAATG 59.881 40.741 0.00 0.00 0.00 2.82
3317 3951 7.164122 CAGCATCTATACAACCTCCATACAAT 58.836 38.462 0.00 0.00 0.00 2.71
3318 3952 6.524734 CAGCATCTATACAACCTCCATACAA 58.475 40.000 0.00 0.00 0.00 2.41
3319 3953 5.511373 GCAGCATCTATACAACCTCCATACA 60.511 44.000 0.00 0.00 0.00 2.29
3320 3954 4.932200 GCAGCATCTATACAACCTCCATAC 59.068 45.833 0.00 0.00 0.00 2.39
3321 3955 4.321974 CGCAGCATCTATACAACCTCCATA 60.322 45.833 0.00 0.00 0.00 2.74
3322 3956 3.555795 CGCAGCATCTATACAACCTCCAT 60.556 47.826 0.00 0.00 0.00 3.41
3323 3957 2.224042 CGCAGCATCTATACAACCTCCA 60.224 50.000 0.00 0.00 0.00 3.86
3324 3958 2.224066 ACGCAGCATCTATACAACCTCC 60.224 50.000 0.00 0.00 0.00 4.30
3325 3959 3.053455 GACGCAGCATCTATACAACCTC 58.947 50.000 0.00 0.00 0.00 3.85
3326 3960 2.430694 TGACGCAGCATCTATACAACCT 59.569 45.455 0.00 0.00 0.00 3.50
3327 3961 2.821546 TGACGCAGCATCTATACAACC 58.178 47.619 0.00 0.00 0.00 3.77
3328 3962 5.409643 AATTGACGCAGCATCTATACAAC 57.590 39.130 0.00 0.00 0.00 3.32
3329 3963 7.728847 ATAAATTGACGCAGCATCTATACAA 57.271 32.000 0.00 0.00 0.00 2.41
3330 3964 7.359181 CGAATAAATTGACGCAGCATCTATACA 60.359 37.037 0.00 0.00 0.00 2.29
3331 3965 6.950428 CGAATAAATTGACGCAGCATCTATAC 59.050 38.462 0.00 0.00 0.00 1.47
3332 3966 6.090763 CCGAATAAATTGACGCAGCATCTATA 59.909 38.462 0.00 0.00 0.00 1.31
3333 3967 5.106948 CCGAATAAATTGACGCAGCATCTAT 60.107 40.000 0.00 0.00 0.00 1.98
3334 3968 4.211164 CCGAATAAATTGACGCAGCATCTA 59.789 41.667 0.00 0.00 0.00 1.98
3335 3969 3.002656 CCGAATAAATTGACGCAGCATCT 59.997 43.478 0.00 0.00 0.00 2.90
3336 3970 3.291585 CCGAATAAATTGACGCAGCATC 58.708 45.455 0.00 0.00 0.00 3.91
3337 3971 2.033299 CCCGAATAAATTGACGCAGCAT 59.967 45.455 0.00 0.00 0.00 3.79
3338 3972 1.400142 CCCGAATAAATTGACGCAGCA 59.600 47.619 0.00 0.00 0.00 4.41
3339 3973 1.400494 ACCCGAATAAATTGACGCAGC 59.600 47.619 0.00 0.00 0.00 5.25
3340 3974 2.285602 CGACCCGAATAAATTGACGCAG 60.286 50.000 0.00 0.00 0.00 5.18
3341 3975 1.661617 CGACCCGAATAAATTGACGCA 59.338 47.619 0.00 0.00 0.00 5.24
3342 3976 1.004292 CCGACCCGAATAAATTGACGC 60.004 52.381 0.00 0.00 0.00 5.19
3343 3977 2.538449 CTCCGACCCGAATAAATTGACG 59.462 50.000 0.00 0.00 0.00 4.35
3344 3978 3.308866 CACTCCGACCCGAATAAATTGAC 59.691 47.826 0.00 0.00 0.00 3.18
3345 3979 3.196039 TCACTCCGACCCGAATAAATTGA 59.804 43.478 0.00 0.00 0.00 2.57
3346 3980 3.527533 TCACTCCGACCCGAATAAATTG 58.472 45.455 0.00 0.00 0.00 2.32
3347 3981 3.197116 ACTCACTCCGACCCGAATAAATT 59.803 43.478 0.00 0.00 0.00 1.82
3348 3982 2.764572 ACTCACTCCGACCCGAATAAAT 59.235 45.455 0.00 0.00 0.00 1.40
3349 3983 2.173519 ACTCACTCCGACCCGAATAAA 58.826 47.619 0.00 0.00 0.00 1.40
3350 3984 1.843368 ACTCACTCCGACCCGAATAA 58.157 50.000 0.00 0.00 0.00 1.40
3351 3985 2.092753 AGTACTCACTCCGACCCGAATA 60.093 50.000 0.00 0.00 0.00 1.75
3352 3986 1.101331 GTACTCACTCCGACCCGAAT 58.899 55.000 0.00 0.00 0.00 3.34
3353 3987 0.037303 AGTACTCACTCCGACCCGAA 59.963 55.000 0.00 0.00 0.00 4.30
3354 3988 0.904649 TAGTACTCACTCCGACCCGA 59.095 55.000 0.00 0.00 36.14 5.14
3355 3989 1.742761 TTAGTACTCACTCCGACCCG 58.257 55.000 0.00 0.00 36.14 5.28
3356 3990 4.732672 AAATTAGTACTCACTCCGACCC 57.267 45.455 0.00 0.00 36.14 4.46
3357 3991 4.868734 CCAAAATTAGTACTCACTCCGACC 59.131 45.833 0.00 0.00 36.14 4.79
3358 3992 4.329256 GCCAAAATTAGTACTCACTCCGAC 59.671 45.833 0.00 0.00 36.14 4.79
3359 3993 4.020928 TGCCAAAATTAGTACTCACTCCGA 60.021 41.667 0.00 0.00 36.14 4.55
3360 3994 4.250464 TGCCAAAATTAGTACTCACTCCG 58.750 43.478 0.00 0.00 36.14 4.63
3361 3995 5.648092 ACATGCCAAAATTAGTACTCACTCC 59.352 40.000 0.00 0.00 36.14 3.85
3362 3996 6.743575 ACATGCCAAAATTAGTACTCACTC 57.256 37.500 0.00 0.00 36.14 3.51
3363 3997 6.316390 GCTACATGCCAAAATTAGTACTCACT 59.684 38.462 0.00 0.00 35.70 3.41
3364 3998 6.316390 AGCTACATGCCAAAATTAGTACTCAC 59.684 38.462 0.00 0.00 44.23 3.51
3365 3999 6.414732 AGCTACATGCCAAAATTAGTACTCA 58.585 36.000 0.00 0.00 44.23 3.41
3366 4000 6.538742 TGAGCTACATGCCAAAATTAGTACTC 59.461 38.462 0.00 0.00 44.23 2.59
3367 4001 6.414732 TGAGCTACATGCCAAAATTAGTACT 58.585 36.000 0.00 0.00 44.23 2.73
3442 4076 8.628630 TGGTGACAATTGACTGATAATGTTAA 57.371 30.769 13.59 0.00 37.44 2.01
3516 4150 6.003950 ACTGAAAACCAAGCATAGTATGTGT 58.996 36.000 11.73 2.25 0.00 3.72
3518 4152 8.046708 TCATACTGAAAACCAAGCATAGTATGT 58.953 33.333 11.73 0.00 43.18 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.