AutoCloner

Multiple sequence alignment - TraesCS3B01G340000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G340000	chr3B	100.000	3584	0	0	1	3584	545805041	545808624	0.000000e+00	6619.0
1	TraesCS3B01G340000	chr3B	97.232	289	7	1	105	392	423737487	423737199	4.160000e-134	488.0
2	TraesCS3B01G340000	chr3D	90.668	2454	140	40	484	2865	419589308	419586872	0.000000e+00	3181.0
3	TraesCS3B01G340000	chr3D	87.097	403	25	13	2902	3284	419586580	419586185	7.110000e-117	431.0
4	TraesCS3B01G340000	chr3D	89.262	298	32	0	3284	3581	419580892	419580595	1.220000e-99	374.0
5	TraesCS3B01G340000	chr3D	92.000	50	3	1	3334	3382	419586264	419586215	6.420000e-08	69.4
6	TraesCS3B01G340000	chr3D	100.000	32	0	0	55	86	595508195	595508226	3.860000e-05	60.2
7	TraesCS3B01G340000	chr3A	93.108	2075	105	21	817	2865	531629436	531631498	0.000000e+00	3005.0
8	TraesCS3B01G340000	chr3A	87.143	560	48	11	3045	3581	531631981	531632539	6.580000e-172	614.0
9	TraesCS3B01G340000	chr3A	86.806	144	4	7	484	614	531627137	531627278	2.880000e-31	147.0
10	TraesCS3B01G340000	chr3A	91.176	68	5	1	643	709	531627539	531627606	1.370000e-14	91.6
11	TraesCS3B01G340000	chr3A	96.000	50	1	1	3334	3382	531632160	531632209	2.970000e-11	80.5
12	TraesCS3B01G340000	chrUn	100.000	1093	0	0	1	1093	267218320	267219412	0.000000e+00	2019.0
13	TraesCS3B01G340000	chrUn	84.068	1519	230	8	1069	2576	289483390	289484907	0.000000e+00	1454.0
14	TraesCS3B01G340000	chrUn	84.068	1519	230	8	1069	2576	296679637	296681154	0.000000e+00	1454.0
15	TraesCS3B01G340000	chr1D	87.879	1485	174	6	1089	2570	14719183	14717702	0.000000e+00	1740.0
16	TraesCS3B01G340000	chr1D	94.231	52	3	0	1	52	425370180	425370129	2.970000e-11	80.5
17	TraesCS3B01G340000	chr1D	100.000	31	0	0	56	86	470806429	470806399	1.390000e-04	58.4
18	TraesCS3B01G340000	chr1A	87.383	1498	183	6	1078	2572	15324701	15326195	0.000000e+00	1714.0
19	TraesCS3B01G340000	chr4D	84.132	1481	223	11	1098	2567	506852996	506854475	0.000000e+00	1423.0
20	TraesCS3B01G340000	chr4D	100.000	32	0	0	55	86	280759067	280759036	3.860000e-05	60.2
21	TraesCS3B01G340000	chr2B	82.837	1445	243	5	1094	2536	787528742	787527301	0.000000e+00	1290.0
22	TraesCS3B01G340000	chr2B	97.059	34	1	0	54	87	690718720	690718687	1.390000e-04	58.4
23	TraesCS3B01G340000	chr4B	84.018	1314	195	14	1250	2553	664357594	664356286	0.000000e+00	1249.0
24	TraesCS3B01G340000	chr7A	98.929	280	3	0	103	382	610710438	610710717	5.340000e-138	501.0
25	TraesCS3B01G340000	chr7A	97.569	288	6	1	95	381	567573518	567573805	3.220000e-135	492.0
26	TraesCS3B01G340000	chr7A	84.783	92	6	3	1	87	672063235	672063147	6.380000e-13	86.1
27	TraesCS3B01G340000	chr6A	98.929	280	3	0	102	381	38757814	38758093	5.340000e-138	501.0
28	TraesCS3B01G340000	chr1B	98.577	281	4	0	103	383	660082057	660082337	6.910000e-137	497.0
29	TraesCS3B01G340000	chr1B	94.231	52	3	0	1	52	555322420	555322471	2.970000e-11	80.5
30	TraesCS3B01G340000	chr1B	100.000	32	0	0	56	87	32050740	32050709	3.860000e-05	60.2
31	TraesCS3B01G340000	chr6B	98.233	283	5	0	100	382	637371770	637372052	2.490000e-136	496.0
32	TraesCS3B01G340000	chr5A	97.561	287	6	1	96	381	637168957	637168671	1.160000e-134	490.0
33	TraesCS3B01G340000	chr2A	97.232	289	6	2	95	382	70704312	70704025	4.160000e-134	488.0
34	TraesCS3B01G340000	chr7B	96.154	52	2	0	1	52	99803336	99803285	6.380000e-13	86.1
35	TraesCS3B01G340000	chr7D	94.231	52	3	0	1	52	117208327	117208276	2.970000e-11	80.5
36	TraesCS3B01G340000	chr5D	94.231	52	3	0	1	52	413054862	413054913	2.970000e-11	80.5
37	TraesCS3B01G340000	chr5B	92.727	55	4	0	1	55	2617293	2617239	2.970000e-11	80.5
38	TraesCS3B01G340000	chr5B	94.231	52	3	0	1	52	116645247	116645298	2.970000e-11	80.5
39	TraesCS3B01G340000	chr5B	94.231	52	3	0	1	52	508255638	508255689	2.970000e-11	80.5
40	TraesCS3B01G340000	chr5B	97.500	40	1	0	55	94	678154524	678154563	6.420000e-08	69.4
41	TraesCS3B01G340000	chr5B	89.130	46	5	0	55	100	599980249	599980204	1.390000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G340000	chr3B	545805041	545808624	3583	False	6619.000000	6619	100.000000	1	3584	1	chr3B.!!$F1	3583
1	TraesCS3B01G340000	chr3D	419586185	419589308	3123	True	1227.133333	3181	89.921667	484	3382	3	chr3D.!!$R2	2898
2	TraesCS3B01G340000	chr3A	531627137	531632539	5402	False	787.620000	3005	90.846600	484	3581	5	chr3A.!!$F1	3097
3	TraesCS3B01G340000	chrUn	267218320	267219412	1092	False	2019.000000	2019	100.000000	1	1093	1	chrUn.!!$F1	1092
4	TraesCS3B01G340000	chrUn	289483390	289484907	1517	False	1454.000000	1454	84.068000	1069	2576	1	chrUn.!!$F2	1507
5	TraesCS3B01G340000	chrUn	296679637	296681154	1517	False	1454.000000	1454	84.068000	1069	2576	1	chrUn.!!$F3	1507
6	TraesCS3B01G340000	chr1D	14717702	14719183	1481	True	1740.000000	1740	87.879000	1089	2570	1	chr1D.!!$R1	1481
7	TraesCS3B01G340000	chr1A	15324701	15326195	1494	False	1714.000000	1714	87.383000	1078	2572	1	chr1A.!!$F1	1494
8	TraesCS3B01G340000	chr4D	506852996	506854475	1479	False	1423.000000	1423	84.132000	1098	2567	1	chr4D.!!$F1	1469
9	TraesCS3B01G340000	chr2B	787527301	787528742	1441	True	1290.000000	1290	82.837000	1094	2536	1	chr2B.!!$R2	1442
10	TraesCS3B01G340000	chr4B	664356286	664357594	1308	True	1249.000000	1249	84.018000	1250	2553	1	chr4B.!!$R1	1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1461	3459	1.153549	GCTGGAGATGGTGGTCGTC	60.154	63.158	0.0	0.0	0.0	4.2	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
3399	5844	0.891373	CGGCGAGATCCATGGTAGAT	59.109	55.0	12.58	0.0	0.0	1.98	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1461	3459	1.153549	GCTGGAGATGGTGGTCGTC	60.154	63.158	0.00	0.00	0.00	4.20
1662	3660	1.376812	GACCCATTTCGCCTTCCGT	60.377	57.895	0.00	0.00	38.35	4.69
1713	3711	3.787676	CACTGCCGCGCGATTCAA	61.788	61.111	34.63	10.52	0.00	2.69
1806	3804	2.662596	CTGGTGCCGCTGTTCCTA	59.337	61.111	0.00	0.00	0.00	2.94
1943	3941	3.319198	GGTCTGCCCGGAGTTCCA	61.319	66.667	0.73	0.00	35.14	3.53
2010	4008	3.052082	CACAAGTGGCTCCTGGCG	61.052	66.667	0.00	0.00	42.94	5.69
2047	4045	2.185310	GATGTGGGTGAAGAGGCCGT	62.185	60.000	0.00	0.00	0.00	5.68
2333	4331	4.329545	GGTGTGCTTCCGGCTCCA	62.330	66.667	0.00	0.00	42.39	3.86
2433	4437	2.731571	GGGCCCGTACATGAGCTCA	61.732	63.158	20.79	20.79	0.00	4.26
2584	4592	2.683968	TCTACAGCGTGCTTGGTTAAG	58.316	47.619	0.00	0.00	36.97	1.85
2587	4595	0.238289	CAGCGTGCTTGGTTAAGGTG	59.762	55.000	0.00	0.00	34.40	4.00
2588	4596	0.107831	AGCGTGCTTGGTTAAGGTGA	59.892	50.000	0.00	0.00	34.40	4.02
2589	4597	0.948678	GCGTGCTTGGTTAAGGTGAA	59.051	50.000	0.00	0.00	34.40	3.18
2590	4598	1.539827	GCGTGCTTGGTTAAGGTGAAT	59.460	47.619	0.00	0.00	34.40	2.57
2591	4599	2.745281	GCGTGCTTGGTTAAGGTGAATA	59.255	45.455	0.00	0.00	34.40	1.75
2592	4600	3.377172	GCGTGCTTGGTTAAGGTGAATAT	59.623	43.478	0.00	0.00	34.40	1.28
2593	4601	4.573201	GCGTGCTTGGTTAAGGTGAATATA	59.427	41.667	0.00	0.00	34.40	0.86
2594	4602	5.238650	GCGTGCTTGGTTAAGGTGAATATAT	59.761	40.000	0.00	0.00	34.40	0.86
2595	4603	6.425721	GCGTGCTTGGTTAAGGTGAATATATA	59.574	38.462	0.00	0.00	34.40	0.86
2596	4604	7.119262	GCGTGCTTGGTTAAGGTGAATATATAT	59.881	37.037	0.00	0.00	34.40	0.86
2597	4605	8.443160	CGTGCTTGGTTAAGGTGAATATATATG	58.557	37.037	0.00	0.00	34.40	1.78
2598	4606	9.284968	GTGCTTGGTTAAGGTGAATATATATGT	57.715	33.333	0.00	0.00	34.40	2.29
2599	4607	9.860650	TGCTTGGTTAAGGTGAATATATATGTT	57.139	29.630	0.00	0.00	34.40	2.71
2657	4677	6.205101	TCCTAATTAAGTCTCGACCTCAAC	57.795	41.667	0.00	0.00	0.00	3.18
2730	4755	1.428448	TGATGACGTGTACTGCTTGC	58.572	50.000	0.00	0.00	0.00	4.01
2740	4765	1.801178	GTACTGCTTGCTTCACTCACC	59.199	52.381	0.00	0.00	0.00	4.02
2757	4782	3.096092	TCACCCTGTTTGCAGTTTTCTT	58.904	40.909	0.00	0.00	41.02	2.52
2778	4825	7.962964	TCTTCGTTGAGTTCTCAAAACATAT	57.037	32.000	15.44	0.00	0.00	1.78
2787	4834	5.010617	AGTTCTCAAAACATATGCCCGTTTT	59.989	36.000	1.58	0.00	44.08	2.43
2798	4845	2.557317	TGCCCGTTTTAGCAGCTATAC	58.443	47.619	2.02	4.19	33.08	1.47
2806	4853	5.005779	CGTTTTAGCAGCTATACAGTGGAAG	59.994	44.000	2.02	0.00	0.00	3.46
2830	4877	6.320164	AGCTTAATTATATGTTTTGCGTGGGA	59.680	34.615	0.00	0.00	0.00	4.37
2831	4878	6.636850	GCTTAATTATATGTTTTGCGTGGGAG	59.363	38.462	0.00	0.00	0.00	4.30
2833	4880	1.102978	ATATGTTTTGCGTGGGAGGC	58.897	50.000	0.00	0.00	0.00	4.70
2841	4888	1.172180	TGCGTGGGAGGCTTCAAAAG	61.172	55.000	0.00	0.00	0.00	2.27
2842	4889	1.172812	GCGTGGGAGGCTTCAAAAGT	61.173	55.000	0.00	0.00	0.00	2.66
2846	4893	3.304458	CGTGGGAGGCTTCAAAAGTTTAC	60.304	47.826	0.00	0.00	0.00	2.01
2850	4898	4.037089	GGGAGGCTTCAAAAGTTTACGAAA	59.963	41.667	0.00	0.00	0.00	3.46
2857	4905	8.284693	GGCTTCAAAAGTTTACGAAATACAGTA	58.715	33.333	0.00	0.00	0.00	2.74
2861	4909	9.754382	TCAAAAGTTTACGAAATACAGTAGACT	57.246	29.630	0.00	0.00	39.12	3.24
2866	4914	9.837525	AGTTTACGAAATACAGTAGACTACAAG	57.162	33.333	14.95	9.09	36.79	3.16
2867	4915	9.831737	GTTTACGAAATACAGTAGACTACAAGA	57.168	33.333	14.95	0.00	0.00	3.02
2869	4917	9.999009	TTACGAAATACAGTAGACTACAAGATG	57.001	33.333	14.95	6.71	0.00	2.90
2870	4918	8.053026	ACGAAATACAGTAGACTACAAGATGT	57.947	34.615	14.95	11.84	0.00	3.06
2871	4919	8.182881	ACGAAATACAGTAGACTACAAGATGTC	58.817	37.037	14.95	7.75	0.00	3.06
2899	5230	9.676861	ACTATGATTTTGTCAATCTCAAGATGA	57.323	29.630	0.00	0.00	40.97	2.92
2927	5274	9.610705	AACATATGCATACATATTGATCTCCTC	57.389	33.333	8.99	0.00	45.34	3.71
2928	5275	8.990203	ACATATGCATACATATTGATCTCCTCT	58.010	33.333	8.99	0.00	45.34	3.69
2952	5299	4.664150	AGGAAAAATCCTTCAAACGCAA	57.336	36.364	0.00	0.00	36.56	4.85
2974	5322	5.483685	ACTCCTTTATTAGCACACAGACA	57.516	39.130	0.00	0.00	0.00	3.41
2978	5326	5.932303	TCCTTTATTAGCACACAGACAGAAC	59.068	40.000	0.00	0.00	0.00	3.01
2994	5342	7.554118	ACAGACAGAACCCATATTTGTTATCAG	59.446	37.037	0.00	0.00	0.00	2.90
3003	5351	8.796475	ACCCATATTTGTTATCAGTATCATTGC	58.204	33.333	0.00	0.00	0.00	3.56
3011	5359	7.886338	TGTTATCAGTATCATTGCTAGTCGAT	58.114	34.615	0.00	0.00	0.00	3.59
3027	5375	1.742900	CGATCGGTAGCAACAGCACG	61.743	60.000	7.38	0.00	0.00	5.34
3052	5408	2.101917	ACGTACGGGTTTGGATGATAGG	59.898	50.000	21.06	0.00	0.00	2.57
3053	5409	2.363038	CGTACGGGTTTGGATGATAGGA	59.637	50.000	7.57	0.00	0.00	2.94
3054	5410	3.725490	GTACGGGTTTGGATGATAGGAC	58.275	50.000	0.00	0.00	0.00	3.85
3055	5411	1.489230	ACGGGTTTGGATGATAGGACC	59.511	52.381	0.00	0.00	0.00	4.46
3056	5412	1.540363	CGGGTTTGGATGATAGGACCG	60.540	57.143	0.00	0.00	0.00	4.79
3083	5505	3.056213	CTGGCCAACAGGAAACCAT	57.944	52.632	7.01	0.00	43.70	3.55
3132	5554	8.046107	ACCTACATACTCCTAGATCGGTATAAC	58.954	40.741	0.00	0.00	0.00	1.89
3195	5617	3.460672	GATCCCCATCGCAAGCGGA	62.461	63.158	14.98	3.74	40.25	5.54
3209	5631	0.669625	AGCGGACAGGCGTTTACTTC	60.670	55.000	0.00	0.00	38.18	3.01
3248	5689	7.617041	AGCATTTTCCTTCACATCTTAGTAC	57.383	36.000	0.00	0.00	0.00	2.73
3288	5729	4.009002	TCGTTGGCAGAAATTCATGATCA	58.991	39.130	0.00	0.00	0.00	2.92
3302	5743	4.189231	TCATGATCACAAGCACTCATCTG	58.811	43.478	0.00	0.00	0.00	2.90
3306	5751	1.901833	TCACAAGCACTCATCTGCCTA	59.098	47.619	0.00	0.00	37.96	3.93
3404	5849	9.908152	ATTGTTTAAGCAAAGGTTGTTATCTAC	57.092	29.630	8.89	0.00	31.63	2.59
3421	5866	0.541998	TACCATGGATCTCGCCGGAT	60.542	55.000	21.47	0.00	0.00	4.18
3423	5868	1.667722	CATGGATCTCGCCGGATCA	59.332	57.895	5.05	0.00	42.63	2.92
3426	5871	2.730733	GATCTCGCCGGATCAGCA	59.269	61.111	5.05	0.00	41.07	4.41
3434	5879	1.718757	GCCGGATCAGCAACATCCAC	61.719	60.000	5.05	0.00	40.09	4.02
3466	5911	2.385803	GGACTCCCACGAAGATTAGGA	58.614	52.381	0.00	0.00	0.00	2.94
3471	5916	3.371034	TCCCACGAAGATTAGGATGTGA	58.629	45.455	0.00	0.00	0.00	3.58
3476	5921	6.153067	CCACGAAGATTAGGATGTGAGATAC	58.847	44.000	0.00	0.00	0.00	2.24
3478	5923	5.763698	ACGAAGATTAGGATGTGAGATACGA	59.236	40.000	0.00	0.00	0.00	3.43
3483	5928	7.782049	AGATTAGGATGTGAGATACGAAACAA	58.218	34.615	0.00	0.00	0.00	2.83
3488	5933	5.760253	GGATGTGAGATACGAAACAATCCAT	59.240	40.000	0.00	0.00	0.00	3.41
3493	5938	4.119862	AGATACGAAACAATCCATGTCCG	58.880	43.478	0.00	0.00	42.99	4.79
3494	5939	1.448985	ACGAAACAATCCATGTCCGG	58.551	50.000	0.00	0.00	42.99	5.14
3496	5941	1.102978	GAAACAATCCATGTCCGGGG	58.897	55.000	0.00	0.00	42.99	5.73
3499	5944	0.701731	ACAATCCATGTCCGGGGAAA	59.298	50.000	0.00	0.00	37.96	3.13
3514	5959	3.324117	GGGGAAAAGTAAGACGTCAGAC	58.676	50.000	19.50	14.61	0.00	3.51
3543	5988	2.296752	TGTCCACAACCGTCGAAGATTA	59.703	45.455	0.00	0.00	40.67	1.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1602	3600	2.203365	TCGCCGATCCTCCTCTCC	60.203	66.667	0.00	0.00	0.00	3.71
1990	3988	2.833913	CCAGGAGCCACTTGTGGGT	61.834	63.158	22.38	22.38	43.14	4.51
2333	4331	2.567049	CGAACTTCTCCGGCGACT	59.433	61.111	9.30	0.00	0.00	4.18
2596	4604	9.719355	TGCAAGTAGATTTTACATAGAGAAACA	57.281	29.630	0.00	0.00	0.00	2.83
2599	4607	9.587772	GTCTGCAAGTAGATTTTACATAGAGAA	57.412	33.333	0.00	0.00	33.76	2.87
2657	4677	1.171308	TCCTCGTGGTTTCGACCTAG	58.829	55.000	2.99	0.00	35.91	3.02
2665	4688	6.834168	ATCAAATACAAATCCTCGTGGTTT	57.166	33.333	2.99	0.00	34.23	3.27
2730	4755	1.605710	CTGCAAACAGGGTGAGTGAAG	59.394	52.381	0.00	0.00	40.48	3.02
2778	4825	2.093394	TGTATAGCTGCTAAAACGGGCA	60.093	45.455	14.13	2.87	36.94	5.36
2787	4834	3.300388	AGCTTCCACTGTATAGCTGCTA	58.700	45.455	12.40	12.40	42.07	3.49
2798	4845	9.023967	GCAAAACATATAATTAAGCTTCCACTG	57.976	33.333	0.00	0.00	0.00	3.66
2806	4853	6.500041	TCCCACGCAAAACATATAATTAAGC	58.500	36.000	0.00	0.00	0.00	3.09
2830	4877	7.012989	ACTGTATTTCGTAAACTTTTGAAGCCT	59.987	33.333	0.00	0.00	0.00	4.58
2831	4878	7.136772	ACTGTATTTCGTAAACTTTTGAAGCC	58.863	34.615	0.00	0.00	0.00	4.35
2841	4888	9.831737	TCTTGTAGTCTACTGTATTTCGTAAAC	57.168	33.333	11.28	0.00	0.00	2.01
2846	4893	8.399425	AGACATCTTGTAGTCTACTGTATTTCG	58.601	37.037	11.28	0.00	42.92	3.46
2868	4916	9.942850	TTGAGATTGACAAAATCATAGTAGACA	57.057	29.630	6.54	0.00	37.11	3.41
2878	4926	9.467258	TGTTTTCATCTTGAGATTGACAAAATC	57.533	29.630	0.00	0.00	31.21	2.17
2883	5214	8.186163	GCATATGTTTTCATCTTGAGATTGACA	58.814	33.333	4.29	0.00	41.25	3.58
2934	5281	4.099419	AGGAGTTGCGTTTGAAGGATTTTT	59.901	37.500	0.00	0.00	0.00	1.94
2952	5299	5.246203	TCTGTCTGTGTGCTAATAAAGGAGT	59.754	40.000	0.00	0.00	0.00	3.85
2978	5326	9.017509	AGCAATGATACTGATAACAAATATGGG	57.982	33.333	0.00	0.00	0.00	4.00
2994	5342	4.162096	ACCGATCGACTAGCAATGATAC	57.838	45.455	18.66	0.00	0.00	2.24
3002	5350	1.065102	TGTTGCTACCGATCGACTAGC	59.935	52.381	25.90	25.90	34.60	3.42
3003	5351	2.855187	GCTGTTGCTACCGATCGACTAG	60.855	54.545	18.66	15.03	36.03	2.57
3011	5359	2.736995	GCGTGCTGTTGCTACCGA	60.737	61.111	0.00	0.00	40.48	4.69
3066	5488	1.415659	CAAATGGTTTCCTGTTGGCCA	59.584	47.619	0.00	0.00	0.00	5.36
3100	5522	6.519382	CGATCTAGGAGTATGTAGGTCAGAGT	60.519	46.154	0.00	0.00	0.00	3.24
3132	5554	9.814899	CTAATATAGGTCAGAGGATATGCTTTG	57.185	37.037	8.30	8.30	0.00	2.77
3195	5617	2.025418	CGCCGAAGTAAACGCCTGT	61.025	57.895	0.00	0.00	0.00	4.00
3222	5644	9.162764	GTACTAAGATGTGAAGGAAAATGCTTA	57.837	33.333	0.00	0.00	0.00	3.09
3248	5689	7.531280	CCAACGAGGCATTCTATATCAATAG	57.469	40.000	0.00	0.00	37.08	1.73
3288	5729	3.054875	TCATTAGGCAGATGAGTGCTTGT	60.055	43.478	0.00	0.00	43.45	3.16
3302	5743	1.757699	ACCTCTCCGTCTTCATTAGGC	59.242	52.381	0.00	0.00	0.00	3.93
3399	5844	0.891373	CGGCGAGATCCATGGTAGAT	59.109	55.000	12.58	0.00	0.00	1.98
3404	5849	1.079543	GATCCGGCGAGATCCATGG	60.080	63.158	20.62	4.97	37.31	3.66
3421	5866	2.359850	GGCCGTGGATGTTGCTGA	60.360	61.111	0.00	0.00	0.00	4.26
3423	5868	2.672996	GTGGCCGTGGATGTTGCT	60.673	61.111	0.00	0.00	0.00	3.91
3446	5891	2.385803	TCCTAATCTTCGTGGGAGTCC	58.614	52.381	0.00	0.00	0.00	3.85
3448	5893	3.133003	CACATCCTAATCTTCGTGGGAGT	59.867	47.826	0.00	0.00	0.00	3.85
3466	5911	6.115446	ACATGGATTGTTTCGTATCTCACAT	58.885	36.000	0.00	0.00	33.74	3.21
3471	5916	4.119862	CGGACATGGATTGTTTCGTATCT	58.880	43.478	0.00	0.00	39.18	1.98
3476	5921	0.732571	CCCGGACATGGATTGTTTCG	59.267	55.000	0.73	0.00	39.18	3.46
3478	5923	0.701731	TCCCCGGACATGGATTGTTT	59.298	50.000	0.73	0.00	39.18	2.83
3483	5928	0.999712	ACTTTTCCCCGGACATGGAT	59.000	50.000	0.73	0.00	0.00	3.41
3488	5933	1.001181	CGTCTTACTTTTCCCCGGACA	59.999	52.381	0.73	0.00	0.00	4.02
3493	5938	3.243975	TGTCTGACGTCTTACTTTTCCCC	60.244	47.826	17.92	0.00	0.00	4.81
3494	5939	3.986277	TGTCTGACGTCTTACTTTTCCC	58.014	45.455	17.92	0.00	0.00	3.97
3496	5941	5.175308	GTCCTTGTCTGACGTCTTACTTTTC	59.825	44.000	17.92	0.00	0.00	2.29
3499	5944	4.240175	GTCCTTGTCTGACGTCTTACTT	57.760	45.455	17.92	0.00	0.00	2.24
3524	5969	3.256383	TCTTAATCTTCGACGGTTGTGGA	59.744	43.478	0.00	0.00	0.00	4.02
3529	5974	4.946157	TCCTAGTCTTAATCTTCGACGGTT	59.054	41.667	0.00	0.00	33.10	4.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.