Multiple sequence alignment - TraesCS3B01G339800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G339800 chr3B 100.000 3194 0 0 1 3194 545666855 545670048 0.000000e+00 5899.0
1 TraesCS3B01G339800 chr3B 97.376 1486 38 1 834 2318 545432494 545433979 0.000000e+00 2527.0
2 TraesCS3B01G339800 chr3B 97.172 1485 42 0 834 2318 545562214 545563698 0.000000e+00 2510.0
3 TraesCS3B01G339800 chr3B 96.060 1142 44 1 1177 2318 545494443 545495583 0.000000e+00 1858.0
4 TraesCS3B01G339800 chr3B 93.380 861 24 9 1 838 545560986 545561836 0.000000e+00 1243.0
5 TraesCS3B01G339800 chr3B 96.591 264 9 0 852 1115 545493494 545493757 3.780000e-119 438.0
6 TraesCS3B01G339800 chr3B 82.258 186 22 8 580 764 546200172 546199997 1.980000e-32 150.0
7 TraesCS3B01G339800 chr3B 82.278 79 10 4 3059 3135 809236343 809236267 7.400000e-07 65.8
8 TraesCS3B01G339800 chr3B 86.792 53 4 3 2905 2957 5105980 5106029 4.450000e-04 56.5
9 TraesCS3B01G339800 chr3A 90.631 1633 117 22 834 2447 531945019 531943404 0.000000e+00 2135.0
10 TraesCS3B01G339800 chr3A 84.276 1450 163 34 881 2321 531702706 531701313 0.000000e+00 1354.0
11 TraesCS3B01G339800 chr3A 83.860 1456 169 40 881 2321 531897549 531896145 0.000000e+00 1327.0
12 TraesCS3B01G339800 chr3A 88.608 237 26 1 3 238 531946560 531946324 1.450000e-73 287.0
13 TraesCS3B01G339800 chr3A 85.714 168 14 3 2977 3134 531938821 531938654 5.480000e-38 169.0
14 TraesCS3B01G339800 chr3A 97.143 70 2 0 3125 3194 727538059 727537990 5.600000e-23 119.0
15 TraesCS3B01G339800 chr3A 95.714 70 3 0 3125 3194 272767219 272767150 2.600000e-21 113.0
16 TraesCS3B01G339800 chr3A 95.349 43 2 0 2916 2958 174290220 174290178 5.720000e-08 69.4
17 TraesCS3B01G339800 chr3D 91.903 1445 77 24 834 2271 419386434 419387845 0.000000e+00 1984.0
18 TraesCS3B01G339800 chr3D 82.012 517 51 23 834 1346 419515281 419515759 4.960000e-108 401.0
19 TraesCS3B01G339800 chr3D 90.196 306 22 5 537 838 419385667 419385968 2.990000e-105 392.0
20 TraesCS3B01G339800 chr3D 82.766 470 48 20 881 1346 419463791 419464231 3.860000e-104 388.0
21 TraesCS3B01G339800 chr3D 89.316 234 18 4 3 235 419385438 419385665 1.450000e-73 287.0
22 TraesCS3B01G339800 chr3D 97.674 43 1 0 2916 2958 155563792 155563750 1.230000e-09 75.0
23 TraesCS3B01G339800 chr3D 95.349 43 2 0 2916 2958 155562636 155562594 5.720000e-08 69.4
24 TraesCS3B01G339800 chr3D 95.000 40 2 0 3088 3127 601084471 601084432 2.660000e-06 63.9
25 TraesCS3B01G339800 chr3D 96.875 32 1 0 3093 3124 170965301 170965270 2.000000e-03 54.7
26 TraesCS3B01G339800 chr5D 87.183 1498 142 33 834 2321 442012126 442010669 0.000000e+00 1657.0
27 TraesCS3B01G339800 chr5D 79.208 202 39 3 333 534 345037079 345037277 1.550000e-28 137.0
28 TraesCS3B01G339800 chr5D 88.991 109 12 0 236 344 542387739 542387847 5.560000e-28 135.0
29 TraesCS3B01G339800 chr5D 93.333 75 5 0 3120 3194 77866819 77866745 9.370000e-21 111.0
30 TraesCS3B01G339800 chr5B 87.260 1405 131 36 904 2301 538039243 538037880 0.000000e+00 1559.0
31 TraesCS3B01G339800 chr5B 80.064 311 30 12 240 523 569225877 569225572 5.400000e-48 202.0
32 TraesCS3B01G339800 chr5B 100.000 28 0 0 2795 2822 9622171 9622144 6.000000e-03 52.8
33 TraesCS3B01G339800 chr5B 100.000 28 0 0 2795 2822 9637203 9637176 6.000000e-03 52.8
34 TraesCS3B01G339800 chr4A 89.958 946 81 7 1374 2313 544381397 544382334 0.000000e+00 1208.0
35 TraesCS3B01G339800 chr4A 83.750 560 48 26 834 1375 544380781 544381315 1.030000e-134 490.0
36 TraesCS3B01G339800 chr4A 97.727 44 1 0 2915 2958 65467342 65467385 3.420000e-10 76.8
37 TraesCS3B01G339800 chr7A 80.410 536 64 29 870 1375 669771371 669771895 1.400000e-98 370.0
38 TraesCS3B01G339800 chr7A 83.333 198 31 2 336 533 729948438 729948243 7.040000e-42 182.0
39 TraesCS3B01G339800 chr1D 82.274 299 45 4 240 534 206504353 206504059 5.290000e-63 252.0
40 TraesCS3B01G339800 chr1D 78.472 288 39 1 236 500 441545030 441544743 1.970000e-37 167.0
41 TraesCS3B01G339800 chr1D 90.741 54 3 2 2411 2463 471123229 471123177 1.590000e-08 71.3
42 TraesCS3B01G339800 chr1D 92.857 42 3 0 3086 3127 406671267 406671308 9.570000e-06 62.1
43 TraesCS3B01G339800 chr4B 83.764 271 35 8 235 499 61289784 61290051 6.840000e-62 248.0
44 TraesCS3B01G339800 chr4B 79.377 257 36 14 2563 2814 17240496 17240252 7.090000e-37 165.0
45 TraesCS3B01G339800 chr4B 97.222 72 2 0 3123 3194 253778212 253778141 4.330000e-24 122.0
46 TraesCS3B01G339800 chr6A 78.899 327 45 2 236 539 598164439 598164114 1.940000e-47 200.0
47 TraesCS3B01G339800 chr6A 80.749 187 31 4 335 519 595992643 595992460 1.190000e-29 141.0
48 TraesCS3B01G339800 chrUn 84.817 191 23 4 336 523 199464818 199465005 1.510000e-43 187.0
49 TraesCS3B01G339800 chrUn 95.349 43 2 0 2916 2958 6217867 6217909 5.720000e-08 69.4
50 TraesCS3B01G339800 chr1A 78.896 308 40 7 240 523 98241775 98242081 5.440000e-43 185.0
51 TraesCS3B01G339800 chr1A 90.476 42 4 0 3086 3127 13871567 13871526 4.450000e-04 56.5
52 TraesCS3B01G339800 chr7D 78.176 307 40 10 240 523 93031108 93031410 1.520000e-38 171.0
53 TraesCS3B01G339800 chr7D 91.837 49 3 1 2916 2964 561519504 561519551 2.060000e-07 67.6
54 TraesCS3B01G339800 chr5A 80.526 190 36 1 332 521 503494657 503494469 9.230000e-31 145.0
55 TraesCS3B01G339800 chr5A 98.630 73 1 0 3122 3194 328805577 328805649 2.590000e-26 130.0
56 TraesCS3B01G339800 chr5A 97.674 43 1 0 2916 2958 8658349 8658307 1.230000e-09 75.0
57 TraesCS3B01G339800 chr6B 89.524 105 11 0 240 344 229002686 229002582 2.000000e-27 134.0
58 TraesCS3B01G339800 chr6B 97.143 70 2 0 3125 3194 3588300 3588231 5.600000e-23 119.0
59 TraesCS3B01G339800 chr6B 88.235 68 4 3 3062 3125 644382885 644382818 9.500000e-11 78.7
60 TraesCS3B01G339800 chr2A 100.000 68 0 0 3127 3194 18034130 18034063 3.340000e-25 126.0
61 TraesCS3B01G339800 chr2A 98.529 68 1 0 3127 3194 524950322 524950389 1.560000e-23 121.0
62 TraesCS3B01G339800 chr2A 95.652 46 2 0 2913 2958 524953755 524953710 1.230000e-09 75.0
63 TraesCS3B01G339800 chr2A 92.857 42 3 0 3086 3127 85295787 85295828 9.570000e-06 62.1
64 TraesCS3B01G339800 chr7B 94.595 74 4 0 3121 3194 551062357 551062430 7.240000e-22 115.0
65 TraesCS3B01G339800 chr1B 94.286 35 2 0 3089 3123 546856284 546856250 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G339800 chr3B 545666855 545670048 3193 False 5899.000000 5899 100.000000 1 3194 1 chr3B.!!$F3 3193
1 TraesCS3B01G339800 chr3B 545432494 545433979 1485 False 2527.000000 2527 97.376000 834 2318 1 chr3B.!!$F2 1484
2 TraesCS3B01G339800 chr3B 545560986 545563698 2712 False 1876.500000 2510 95.276000 1 2318 2 chr3B.!!$F5 2317
3 TraesCS3B01G339800 chr3B 545493494 545495583 2089 False 1148.000000 1858 96.325500 852 2318 2 chr3B.!!$F4 1466
4 TraesCS3B01G339800 chr3A 531701313 531702706 1393 True 1354.000000 1354 84.276000 881 2321 1 chr3A.!!$R3 1440
5 TraesCS3B01G339800 chr3A 531896145 531897549 1404 True 1327.000000 1327 83.860000 881 2321 1 chr3A.!!$R4 1440
6 TraesCS3B01G339800 chr3A 531943404 531946560 3156 True 1211.000000 2135 89.619500 3 2447 2 chr3A.!!$R7 2444
7 TraesCS3B01G339800 chr3D 419385438 419387845 2407 False 887.666667 1984 90.471667 3 2271 3 chr3D.!!$F3 2268
8 TraesCS3B01G339800 chr5D 442010669 442012126 1457 True 1657.000000 1657 87.183000 834 2321 1 chr5D.!!$R2 1487
9 TraesCS3B01G339800 chr5B 538037880 538039243 1363 True 1559.000000 1559 87.260000 904 2301 1 chr5B.!!$R3 1397
10 TraesCS3B01G339800 chr4A 544380781 544382334 1553 False 849.000000 1208 86.854000 834 2313 2 chr4A.!!$F2 1479
11 TraesCS3B01G339800 chr7A 669771371 669771895 524 False 370.000000 370 80.410000 870 1375 1 chr7A.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 491 0.906066 TGTTAGGTCCGGCATGCTAA 59.094 50.000 18.92 4.11 0.0 3.09 F
838 1977 1.340893 TGGCACGTGATCCATTCCATT 60.341 47.619 22.23 0.00 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 4013 0.733150 CTCTCACCTGCGTCATCGTA 59.267 55.0 0.00 0.0 39.49 3.43 R
2525 4516 0.038343 ATTTCGGCGCTGCAAACATT 60.038 45.0 12.58 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 108 1.135916 TCGCGACAATTTAAAAGGGCG 60.136 47.619 3.71 12.00 43.33 6.13
225 228 1.517210 GATCTCCCCTAGCGGTCGAC 61.517 65.000 7.13 7.13 0.00 4.20
269 272 2.049156 GGCGCCCAAAAACTGCTC 60.049 61.111 18.11 0.00 0.00 4.26
273 276 2.255252 CCCAAAAACTGCTCCGCG 59.745 61.111 0.00 0.00 0.00 6.46
276 279 3.276846 AAAAACTGCTCCGCGCGT 61.277 55.556 29.95 5.64 43.27 6.01
288 291 1.438059 CGCGCGTTGAAATTCGTGT 60.438 52.632 24.19 0.00 39.32 4.49
329 332 6.459573 CGGCTCCAGCAAAAGCTATAAAATAA 60.460 38.462 0.03 0.00 44.36 1.40
370 396 4.439305 TCACATGCTGTAAATTTGAGGC 57.561 40.909 0.00 2.83 0.00 4.70
402 428 3.029074 GCGCGCTTCATAATTTACACTG 58.971 45.455 26.67 0.00 0.00 3.66
465 491 0.906066 TGTTAGGTCCGGCATGCTAA 59.094 50.000 18.92 4.11 0.00 3.09
505 531 4.201705 CGTTAAAACTATTTTAGGGCGCGA 60.202 41.667 12.10 0.00 36.56 5.87
534 560 1.376037 GCGCCTGGTAGAGTTGCTT 60.376 57.895 0.00 0.00 0.00 3.91
687 713 4.620589 AAATGCATGAAACATGGACCAA 57.379 36.364 0.00 0.00 0.00 3.67
838 1977 1.340893 TGGCACGTGATCCATTCCATT 60.341 47.619 22.23 0.00 0.00 3.16
1011 2197 3.458189 CGAAAGGAAGATGGCGACTAAT 58.542 45.455 0.00 0.00 0.00 1.73
1753 3726 1.452108 GGGCCCTTCTCCAATGTCG 60.452 63.158 17.04 0.00 0.00 4.35
2004 3977 3.366679 GGAACGTGATCGACAGGAAAGTA 60.367 47.826 12.45 0.00 40.62 2.24
2040 4013 1.154016 CGTGCTCAACTCGACGGAT 60.154 57.895 0.00 0.00 37.45 4.18
2070 4043 2.030805 GCAGGTGAGAGAAAACGCAAAT 60.031 45.455 0.00 0.00 0.00 2.32
2079 4052 0.246360 AAAACGCAAATAGGGCAGGC 59.754 50.000 0.00 0.00 0.00 4.85
2240 4218 4.101448 GCTGTCTCCATGGCGGGT 62.101 66.667 6.96 0.00 34.36 5.28
2313 4297 3.973657 TCTCACACTAAAACTCGGTGTC 58.026 45.455 0.00 0.00 41.45 3.67
2318 4302 2.221055 CACTAAAACTCGGTGTCTGTGC 59.779 50.000 0.00 0.00 0.00 4.57
2391 4382 0.667993 TTTTCTGGTTGCTTCTGCCG 59.332 50.000 0.00 0.00 38.71 5.69
2408 4399 7.166473 GCTTCTGCCGATTAAAAACTGATAATG 59.834 37.037 0.00 0.00 0.00 1.90
2417 4408 3.740044 AAACTGATAATGTTGCGACCG 57.260 42.857 0.45 0.00 0.00 4.79
2436 4427 1.799181 CGGCTAGGTGTCAATCGACTG 60.799 57.143 0.00 0.00 43.06 3.51
2441 4432 4.268884 GCTAGGTGTCAATCGACTGAATTC 59.731 45.833 0.00 0.00 43.06 2.17
2444 4435 4.692625 AGGTGTCAATCGACTGAATTCTTG 59.307 41.667 0.00 1.95 43.06 3.02
2447 4438 4.452114 TGTCAATCGACTGAATTCTTGTGG 59.548 41.667 0.00 7.31 43.06 4.17
2448 4439 4.002982 TCAATCGACTGAATTCTTGTGGG 58.997 43.478 7.05 1.37 0.00 4.61
2449 4440 2.472695 TCGACTGAATTCTTGTGGGG 57.527 50.000 7.05 0.00 0.00 4.96
2450 4441 1.697432 TCGACTGAATTCTTGTGGGGT 59.303 47.619 7.05 0.00 0.00 4.95
2451 4442 2.076863 CGACTGAATTCTTGTGGGGTC 58.923 52.381 7.05 3.51 0.00 4.46
2452 4443 2.549992 CGACTGAATTCTTGTGGGGTCA 60.550 50.000 7.05 0.00 0.00 4.02
2453 4444 3.077359 GACTGAATTCTTGTGGGGTCAG 58.923 50.000 7.05 0.00 38.72 3.51
2454 4445 2.443255 ACTGAATTCTTGTGGGGTCAGT 59.557 45.455 7.05 0.00 40.56 3.41
2455 4446 3.077359 CTGAATTCTTGTGGGGTCAGTC 58.923 50.000 7.05 0.00 0.00 3.51
2456 4447 2.441375 TGAATTCTTGTGGGGTCAGTCA 59.559 45.455 7.05 0.00 0.00 3.41
2457 4448 2.568623 ATTCTTGTGGGGTCAGTCAC 57.431 50.000 0.00 0.00 34.71 3.67
2458 4449 1.507140 TTCTTGTGGGGTCAGTCACT 58.493 50.000 0.00 0.00 35.15 3.41
2459 4450 1.507140 TCTTGTGGGGTCAGTCACTT 58.493 50.000 0.00 0.00 35.15 3.16
2460 4451 1.843851 TCTTGTGGGGTCAGTCACTTT 59.156 47.619 0.00 0.00 35.15 2.66
2461 4452 2.241176 TCTTGTGGGGTCAGTCACTTTT 59.759 45.455 0.00 0.00 35.15 2.27
2462 4453 2.818751 TGTGGGGTCAGTCACTTTTT 57.181 45.000 0.00 0.00 35.15 1.94
2463 4454 2.374184 TGTGGGGTCAGTCACTTTTTG 58.626 47.619 0.00 0.00 35.15 2.44
2464 4455 1.681264 GTGGGGTCAGTCACTTTTTGG 59.319 52.381 0.00 0.00 0.00 3.28
2465 4456 1.286553 TGGGGTCAGTCACTTTTTGGT 59.713 47.619 0.00 0.00 0.00 3.67
2466 4457 2.510382 TGGGGTCAGTCACTTTTTGGTA 59.490 45.455 0.00 0.00 0.00 3.25
2467 4458 3.146847 GGGGTCAGTCACTTTTTGGTAG 58.853 50.000 0.00 0.00 0.00 3.18
2468 4459 2.552743 GGGTCAGTCACTTTTTGGTAGC 59.447 50.000 0.00 0.00 0.00 3.58
2469 4460 3.211045 GGTCAGTCACTTTTTGGTAGCA 58.789 45.455 0.00 0.00 0.00 3.49
2470 4461 3.630312 GGTCAGTCACTTTTTGGTAGCAA 59.370 43.478 2.54 2.54 0.00 3.91
2471 4462 4.261197 GGTCAGTCACTTTTTGGTAGCAAG 60.261 45.833 7.51 0.00 0.00 4.01
2472 4463 4.335594 GTCAGTCACTTTTTGGTAGCAAGT 59.664 41.667 7.51 0.00 0.00 3.16
2473 4464 4.947388 TCAGTCACTTTTTGGTAGCAAGTT 59.053 37.500 7.51 0.00 0.00 2.66
2474 4465 6.037830 GTCAGTCACTTTTTGGTAGCAAGTTA 59.962 38.462 7.51 0.00 0.00 2.24
2475 4466 6.037830 TCAGTCACTTTTTGGTAGCAAGTTAC 59.962 38.462 7.51 4.70 0.00 2.50
2476 4467 6.038271 CAGTCACTTTTTGGTAGCAAGTTACT 59.962 38.462 7.51 6.82 36.05 2.24
2477 4468 6.602009 AGTCACTTTTTGGTAGCAAGTTACTT 59.398 34.615 7.51 0.00 33.23 2.24
2478 4469 6.910972 GTCACTTTTTGGTAGCAAGTTACTTC 59.089 38.462 7.51 0.00 0.00 3.01
2479 4470 6.600032 TCACTTTTTGGTAGCAAGTTACTTCA 59.400 34.615 7.51 0.00 0.00 3.02
2480 4471 6.691388 CACTTTTTGGTAGCAAGTTACTTCAC 59.309 38.462 7.51 0.00 0.00 3.18
2481 4472 6.602009 ACTTTTTGGTAGCAAGTTACTTCACT 59.398 34.615 7.51 0.00 0.00 3.41
2482 4473 7.122204 ACTTTTTGGTAGCAAGTTACTTCACTT 59.878 33.333 7.51 0.00 37.49 3.16
2483 4474 8.508883 TTTTTGGTAGCAAGTTACTTCACTTA 57.491 30.769 7.51 0.00 35.10 2.24
2484 4475 7.724305 TTTGGTAGCAAGTTACTTCACTTAG 57.276 36.000 7.51 0.00 35.10 2.18
2485 4476 6.659745 TGGTAGCAAGTTACTTCACTTAGA 57.340 37.500 0.00 0.00 35.10 2.10
2486 4477 6.688578 TGGTAGCAAGTTACTTCACTTAGAG 58.311 40.000 0.00 0.00 35.10 2.43
2487 4478 5.577554 GGTAGCAAGTTACTTCACTTAGAGC 59.422 44.000 0.00 0.00 35.10 4.09
2488 4479 5.215252 AGCAAGTTACTTCACTTAGAGCA 57.785 39.130 0.00 0.00 35.10 4.26
2489 4480 5.799213 AGCAAGTTACTTCACTTAGAGCAT 58.201 37.500 0.00 0.00 35.10 3.79
2490 4481 5.872070 AGCAAGTTACTTCACTTAGAGCATC 59.128 40.000 0.00 0.00 35.10 3.91
2505 4496 2.726760 GAGCATCTTCAATAGGTACGCG 59.273 50.000 3.53 3.53 0.00 6.01
2506 4497 1.792949 GCATCTTCAATAGGTACGCGG 59.207 52.381 12.47 0.00 0.00 6.46
2507 4498 2.802057 GCATCTTCAATAGGTACGCGGT 60.802 50.000 12.47 0.00 0.00 5.68
2508 4499 3.551454 GCATCTTCAATAGGTACGCGGTA 60.551 47.826 12.47 0.00 0.00 4.02
2509 4500 3.976793 TCTTCAATAGGTACGCGGTAG 57.023 47.619 12.47 0.00 0.00 3.18
2510 4501 2.033801 TCTTCAATAGGTACGCGGTAGC 59.966 50.000 12.47 10.29 36.86 3.58
2540 4531 2.224428 AAAAATGTTTGCAGCGCCG 58.776 47.368 2.29 0.00 0.00 6.46
2541 4532 0.249238 AAAAATGTTTGCAGCGCCGA 60.249 45.000 2.29 0.00 0.00 5.54
2542 4533 0.249238 AAAATGTTTGCAGCGCCGAA 60.249 45.000 2.29 0.00 0.00 4.30
2543 4534 0.249238 AAATGTTTGCAGCGCCGAAA 60.249 45.000 2.29 0.00 0.00 3.46
2544 4535 0.038343 AATGTTTGCAGCGCCGAAAT 60.038 45.000 2.29 0.00 0.00 2.17
2545 4536 0.808125 ATGTTTGCAGCGCCGAAATA 59.192 45.000 2.29 0.00 0.00 1.40
2546 4537 0.167908 TGTTTGCAGCGCCGAAATAG 59.832 50.000 2.29 0.00 0.00 1.73
2547 4538 1.133946 GTTTGCAGCGCCGAAATAGC 61.134 55.000 2.29 0.00 0.00 2.97
2575 4566 3.773974 GCAAGAGCGACGAAGAGG 58.226 61.111 0.00 0.00 0.00 3.69
2576 4567 1.080434 GCAAGAGCGACGAAGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
2577 4568 0.667792 GCAAGAGCGACGAAGAGGTT 60.668 55.000 0.00 0.00 0.00 3.50
2578 4569 1.784525 CAAGAGCGACGAAGAGGTTT 58.215 50.000 0.00 0.00 0.00 3.27
2579 4570 2.135933 CAAGAGCGACGAAGAGGTTTT 58.864 47.619 0.00 0.00 0.00 2.43
2580 4571 2.067414 AGAGCGACGAAGAGGTTTTC 57.933 50.000 0.00 0.00 0.00 2.29
2581 4572 1.340248 AGAGCGACGAAGAGGTTTTCA 59.660 47.619 0.00 0.00 0.00 2.69
2582 4573 2.132762 GAGCGACGAAGAGGTTTTCAA 58.867 47.619 0.00 0.00 0.00 2.69
2583 4574 2.135933 AGCGACGAAGAGGTTTTCAAG 58.864 47.619 0.00 0.00 0.00 3.02
2584 4575 2.132762 GCGACGAAGAGGTTTTCAAGA 58.867 47.619 0.00 0.00 0.00 3.02
2585 4576 2.737252 GCGACGAAGAGGTTTTCAAGAT 59.263 45.455 0.00 0.00 0.00 2.40
2586 4577 3.423645 GCGACGAAGAGGTTTTCAAGATG 60.424 47.826 0.00 0.00 0.00 2.90
2587 4578 3.423645 CGACGAAGAGGTTTTCAAGATGC 60.424 47.826 0.00 0.00 0.00 3.91
2588 4579 3.476552 ACGAAGAGGTTTTCAAGATGCA 58.523 40.909 0.00 0.00 0.00 3.96
2589 4580 4.074970 ACGAAGAGGTTTTCAAGATGCAT 58.925 39.130 0.00 0.00 0.00 3.96
2590 4581 5.245531 ACGAAGAGGTTTTCAAGATGCATA 58.754 37.500 0.00 0.00 0.00 3.14
2591 4582 5.705441 ACGAAGAGGTTTTCAAGATGCATAA 59.295 36.000 0.00 0.00 0.00 1.90
2592 4583 6.206634 ACGAAGAGGTTTTCAAGATGCATAAA 59.793 34.615 0.00 0.00 0.00 1.40
2593 4584 7.083858 CGAAGAGGTTTTCAAGATGCATAAAA 58.916 34.615 0.00 0.00 0.00 1.52
2594 4585 7.594758 CGAAGAGGTTTTCAAGATGCATAAAAA 59.405 33.333 0.00 2.07 0.00 1.94
2595 4586 8.593492 AAGAGGTTTTCAAGATGCATAAAAAC 57.407 30.769 20.21 20.21 38.48 2.43
2596 4587 7.725251 AGAGGTTTTCAAGATGCATAAAAACA 58.275 30.769 24.92 4.45 40.08 2.83
2597 4588 8.370182 AGAGGTTTTCAAGATGCATAAAAACAT 58.630 29.630 24.92 21.79 40.08 2.71
2598 4589 8.314143 AGGTTTTCAAGATGCATAAAAACATG 57.686 30.769 24.92 9.87 40.08 3.21
2599 4590 8.149647 AGGTTTTCAAGATGCATAAAAACATGA 58.850 29.630 24.92 11.49 40.08 3.07
2600 4591 8.938906 GGTTTTCAAGATGCATAAAAACATGAT 58.061 29.630 24.92 0.00 40.08 2.45
2601 4592 9.749490 GTTTTCAAGATGCATAAAAACATGATG 57.251 29.630 21.88 0.00 38.84 3.07
2602 4593 7.528481 TTCAAGATGCATAAAAACATGATGC 57.472 32.000 0.00 4.37 45.02 3.91
2603 4594 6.044046 TCAAGATGCATAAAAACATGATGCC 58.956 36.000 12.31 0.72 44.34 4.40
2604 4595 5.601583 AGATGCATAAAAACATGATGCCA 57.398 34.783 12.31 3.45 44.34 4.92
2605 4596 5.979993 AGATGCATAAAAACATGATGCCAA 58.020 33.333 12.31 0.00 44.34 4.52
2606 4597 6.588204 AGATGCATAAAAACATGATGCCAAT 58.412 32.000 12.31 2.44 44.34 3.16
2607 4598 6.481976 AGATGCATAAAAACATGATGCCAATG 59.518 34.615 12.31 4.69 44.34 2.82
2608 4599 4.333095 TGCATAAAAACATGATGCCAATGC 59.667 37.500 12.31 12.73 44.34 3.56
2609 4600 4.551217 GCATAAAAACATGATGCCAATGCG 60.551 41.667 0.00 0.00 40.08 4.73
2610 4601 2.012937 AAAACATGATGCCAATGCGG 57.987 45.000 0.00 0.00 41.78 5.69
2611 4602 0.896923 AAACATGATGCCAATGCGGT 59.103 45.000 0.00 0.00 41.78 5.68
2612 4603 0.173935 AACATGATGCCAATGCGGTG 59.826 50.000 0.00 0.00 41.78 4.94
2613 4604 1.066752 CATGATGCCAATGCGGTGG 59.933 57.895 1.07 1.07 41.78 4.61
2631 4622 4.673375 CCCCACCTGCAGCAGCTT 62.673 66.667 17.81 2.66 42.74 3.74
2632 4623 3.371063 CCCACCTGCAGCAGCTTG 61.371 66.667 17.81 15.07 42.74 4.01
2633 4624 2.596631 CCACCTGCAGCAGCTTGT 60.597 61.111 17.81 6.94 42.74 3.16
2634 4625 1.302752 CCACCTGCAGCAGCTTGTA 60.303 57.895 17.81 0.00 42.74 2.41
2635 4626 1.580845 CCACCTGCAGCAGCTTGTAC 61.581 60.000 17.81 0.00 42.74 2.90
2636 4627 1.669115 ACCTGCAGCAGCTTGTACG 60.669 57.895 17.81 3.93 42.74 3.67
2637 4628 2.393768 CCTGCAGCAGCTTGTACGG 61.394 63.158 17.81 0.00 42.74 4.02
2638 4629 1.374631 CTGCAGCAGCTTGTACGGA 60.375 57.895 10.14 0.00 42.74 4.69
2639 4630 0.742281 CTGCAGCAGCTTGTACGGAT 60.742 55.000 10.14 0.00 42.74 4.18
2640 4631 0.534873 TGCAGCAGCTTGTACGGATA 59.465 50.000 1.76 0.00 42.74 2.59
2641 4632 1.066502 TGCAGCAGCTTGTACGGATAA 60.067 47.619 1.76 0.00 42.74 1.75
2642 4633 2.213499 GCAGCAGCTTGTACGGATAAT 58.787 47.619 0.00 0.00 37.91 1.28
2643 4634 2.221981 GCAGCAGCTTGTACGGATAATC 59.778 50.000 0.00 0.00 37.91 1.75
2644 4635 2.802816 CAGCAGCTTGTACGGATAATCC 59.197 50.000 0.00 0.00 0.00 3.01
2653 4644 3.144285 GGATAATCCGGCGTCCCA 58.856 61.111 6.01 0.00 0.00 4.37
2654 4645 1.448497 GGATAATCCGGCGTCCCAA 59.552 57.895 6.01 0.00 0.00 4.12
2655 4646 0.179040 GGATAATCCGGCGTCCCAAA 60.179 55.000 6.01 0.00 0.00 3.28
2656 4647 1.544759 GGATAATCCGGCGTCCCAAAT 60.545 52.381 6.01 0.00 0.00 2.32
2657 4648 2.227194 GATAATCCGGCGTCCCAAATT 58.773 47.619 6.01 0.00 0.00 1.82
2658 4649 2.131776 TAATCCGGCGTCCCAAATTT 57.868 45.000 6.01 0.00 0.00 1.82
2659 4650 0.530288 AATCCGGCGTCCCAAATTTG 59.470 50.000 11.40 11.40 0.00 2.32
2660 4651 1.944234 ATCCGGCGTCCCAAATTTGC 61.944 55.000 12.92 0.65 0.00 3.68
2661 4652 2.647875 CGGCGTCCCAAATTTGCA 59.352 55.556 12.92 0.00 0.00 4.08
2662 4653 1.444212 CGGCGTCCCAAATTTGCAG 60.444 57.895 12.92 6.40 0.00 4.41
2663 4654 1.737735 GGCGTCCCAAATTTGCAGC 60.738 57.895 12.92 13.18 0.00 5.25
2664 4655 1.290009 GCGTCCCAAATTTGCAGCT 59.710 52.632 12.92 0.00 0.00 4.24
2665 4656 0.733909 GCGTCCCAAATTTGCAGCTC 60.734 55.000 12.92 0.00 0.00 4.09
2666 4657 0.597568 CGTCCCAAATTTGCAGCTCA 59.402 50.000 12.92 0.00 0.00 4.26
2667 4658 1.401931 CGTCCCAAATTTGCAGCTCAG 60.402 52.381 12.92 0.00 0.00 3.35
2668 4659 0.604578 TCCCAAATTTGCAGCTCAGC 59.395 50.000 12.92 0.00 0.00 4.26
2669 4660 0.319083 CCCAAATTTGCAGCTCAGCA 59.681 50.000 12.92 0.00 43.99 4.41
2670 4661 1.671850 CCCAAATTTGCAGCTCAGCAG 60.672 52.381 12.92 0.00 46.54 4.24
2671 4662 1.000506 CCAAATTTGCAGCTCAGCAGT 59.999 47.619 12.92 0.00 46.54 4.40
2672 4663 2.547218 CCAAATTTGCAGCTCAGCAGTT 60.547 45.455 12.92 0.00 46.54 3.16
2673 4664 2.719426 AATTTGCAGCTCAGCAGTTC 57.281 45.000 0.00 0.00 46.54 3.01
2674 4665 0.520404 ATTTGCAGCTCAGCAGTTCG 59.480 50.000 0.00 0.00 46.54 3.95
2675 4666 2.121564 TTTGCAGCTCAGCAGTTCGC 62.122 55.000 0.00 0.00 46.54 4.70
2684 4675 4.527157 GCAGTTCGCTCGCATGCC 62.527 66.667 13.15 0.00 37.77 4.40
2685 4676 3.869272 CAGTTCGCTCGCATGCCC 61.869 66.667 13.15 0.00 0.00 5.36
2686 4677 4.393155 AGTTCGCTCGCATGCCCA 62.393 61.111 13.15 0.00 0.00 5.36
2687 4678 3.204827 GTTCGCTCGCATGCCCAT 61.205 61.111 13.15 0.00 0.00 4.00
2688 4679 3.204119 TTCGCTCGCATGCCCATG 61.204 61.111 13.15 3.93 41.60 3.66
2697 4688 3.261441 CATGCCCATGCGCTAAAAG 57.739 52.632 9.73 0.00 41.78 2.27
2698 4689 0.457035 CATGCCCATGCGCTAAAAGT 59.543 50.000 9.73 0.00 41.78 2.66
2699 4690 0.457035 ATGCCCATGCGCTAAAAGTG 59.543 50.000 9.73 0.00 41.78 3.16
2700 4691 0.893270 TGCCCATGCGCTAAAAGTGT 60.893 50.000 9.73 0.00 41.78 3.55
2701 4692 0.243636 GCCCATGCGCTAAAAGTGTT 59.756 50.000 9.73 0.00 0.00 3.32
2702 4693 1.336795 GCCCATGCGCTAAAAGTGTTT 60.337 47.619 9.73 0.00 0.00 2.83
2703 4694 2.866065 GCCCATGCGCTAAAAGTGTTTT 60.866 45.455 9.73 0.00 36.67 2.43
2704 4695 3.389221 CCCATGCGCTAAAAGTGTTTTT 58.611 40.909 9.73 0.00 39.69 1.94
2705 4696 3.184178 CCCATGCGCTAAAAGTGTTTTTG 59.816 43.478 9.73 0.00 37.12 2.44
2706 4697 3.362888 CCATGCGCTAAAAGTGTTTTTGC 60.363 43.478 9.73 8.05 44.24 3.68
2710 4701 3.218935 GCTAAAAGTGTTTTTGCGTGC 57.781 42.857 3.45 0.00 40.39 5.34
2711 4702 2.857748 GCTAAAAGTGTTTTTGCGTGCT 59.142 40.909 3.45 0.00 40.39 4.40
2712 4703 3.061205 GCTAAAAGTGTTTTTGCGTGCTC 60.061 43.478 3.45 0.00 40.39 4.26
2713 4704 2.939460 AAAGTGTTTTTGCGTGCTCT 57.061 40.000 0.00 0.00 0.00 4.09
2714 4705 4.364415 AAAAGTGTTTTTGCGTGCTCTA 57.636 36.364 0.00 0.00 35.26 2.43
2715 4706 4.568152 AAAGTGTTTTTGCGTGCTCTAT 57.432 36.364 0.00 0.00 0.00 1.98
2716 4707 4.568152 AAGTGTTTTTGCGTGCTCTATT 57.432 36.364 0.00 0.00 0.00 1.73
2717 4708 4.568152 AGTGTTTTTGCGTGCTCTATTT 57.432 36.364 0.00 0.00 0.00 1.40
2718 4709 4.932146 AGTGTTTTTGCGTGCTCTATTTT 58.068 34.783 0.00 0.00 0.00 1.82
2719 4710 6.067263 AGTGTTTTTGCGTGCTCTATTTTA 57.933 33.333 0.00 0.00 0.00 1.52
2720 4711 5.912955 AGTGTTTTTGCGTGCTCTATTTTAC 59.087 36.000 0.00 0.00 0.00 2.01
2721 4712 5.683743 GTGTTTTTGCGTGCTCTATTTTACA 59.316 36.000 0.00 0.00 0.00 2.41
2722 4713 5.912396 TGTTTTTGCGTGCTCTATTTTACAG 59.088 36.000 0.00 0.00 0.00 2.74
2723 4714 3.740044 TTGCGTGCTCTATTTTACAGC 57.260 42.857 0.00 0.00 0.00 4.40
2724 4715 2.694213 TGCGTGCTCTATTTTACAGCA 58.306 42.857 0.00 0.00 40.90 4.41
2725 4716 3.270027 TGCGTGCTCTATTTTACAGCAT 58.730 40.909 0.00 0.00 44.73 3.79
2726 4717 3.309682 TGCGTGCTCTATTTTACAGCATC 59.690 43.478 0.00 0.00 44.73 3.91
2727 4718 3.557595 GCGTGCTCTATTTTACAGCATCT 59.442 43.478 0.00 0.00 44.73 2.90
2728 4719 4.551603 GCGTGCTCTATTTTACAGCATCTG 60.552 45.833 0.00 0.00 44.73 2.90
2729 4720 4.551603 CGTGCTCTATTTTACAGCATCTGC 60.552 45.833 0.00 0.00 44.73 4.26
2783 4774 4.732285 AATTGATATTTAGCGCACGAGG 57.268 40.909 11.47 0.00 0.00 4.63
2784 4775 1.497991 TGATATTTAGCGCACGAGGC 58.502 50.000 11.47 0.00 39.90 4.70
2785 4776 1.202475 TGATATTTAGCGCACGAGGCA 60.202 47.619 11.47 0.00 45.17 4.75
2786 4777 2.069273 GATATTTAGCGCACGAGGCAT 58.931 47.619 11.47 0.00 45.17 4.40
2787 4778 1.948104 TATTTAGCGCACGAGGCATT 58.052 45.000 11.47 0.00 45.17 3.56
2788 4779 1.094785 ATTTAGCGCACGAGGCATTT 58.905 45.000 11.47 0.00 45.17 2.32
2789 4780 0.878416 TTTAGCGCACGAGGCATTTT 59.122 45.000 11.47 0.00 45.17 1.82
2790 4781 0.878416 TTAGCGCACGAGGCATTTTT 59.122 45.000 11.47 0.00 45.17 1.94
2791 4782 0.167908 TAGCGCACGAGGCATTTTTG 59.832 50.000 11.47 0.00 45.17 2.44
2792 4783 1.081509 GCGCACGAGGCATTTTTGA 60.082 52.632 0.30 0.00 45.17 2.69
2793 4784 0.662970 GCGCACGAGGCATTTTTGAA 60.663 50.000 0.30 0.00 45.17 2.69
2794 4785 1.330306 CGCACGAGGCATTTTTGAAG 58.670 50.000 0.00 0.00 45.17 3.02
2795 4786 1.063031 GCACGAGGCATTTTTGAAGC 58.937 50.000 0.00 0.00 43.97 3.86
2796 4787 1.330306 CACGAGGCATTTTTGAAGCG 58.670 50.000 0.00 0.00 0.00 4.68
2797 4788 0.951558 ACGAGGCATTTTTGAAGCGT 59.048 45.000 0.00 0.00 0.00 5.07
2798 4789 1.069227 ACGAGGCATTTTTGAAGCGTC 60.069 47.619 0.00 0.00 39.15 5.19
2799 4790 1.197721 CGAGGCATTTTTGAAGCGTCT 59.802 47.619 0.31 0.00 40.05 4.18
2800 4791 2.589014 GAGGCATTTTTGAAGCGTCTG 58.411 47.619 0.31 0.00 39.36 3.51
2801 4792 1.956477 AGGCATTTTTGAAGCGTCTGT 59.044 42.857 0.31 0.00 0.00 3.41
2802 4793 2.362077 AGGCATTTTTGAAGCGTCTGTT 59.638 40.909 0.31 0.00 0.00 3.16
2803 4794 2.472488 GGCATTTTTGAAGCGTCTGTTG 59.528 45.455 0.31 0.00 0.00 3.33
2804 4795 2.472488 GCATTTTTGAAGCGTCTGTTGG 59.528 45.455 0.31 0.00 0.00 3.77
2805 4796 3.795150 GCATTTTTGAAGCGTCTGTTGGA 60.795 43.478 0.31 0.00 0.00 3.53
2806 4797 3.691049 TTTTTGAAGCGTCTGTTGGAG 57.309 42.857 0.31 0.00 0.00 3.86
2807 4798 2.613026 TTTGAAGCGTCTGTTGGAGA 57.387 45.000 0.31 0.00 0.00 3.71
2808 4799 2.839486 TTGAAGCGTCTGTTGGAGAT 57.161 45.000 0.31 0.00 31.63 2.75
2809 4800 2.084610 TGAAGCGTCTGTTGGAGATG 57.915 50.000 0.31 0.00 40.33 2.90
2814 4805 2.376808 CGTCTGTTGGAGATGCTCTT 57.623 50.000 0.00 0.00 30.78 2.85
2815 4806 3.510388 CGTCTGTTGGAGATGCTCTTA 57.490 47.619 0.00 0.00 30.78 2.10
2816 4807 3.443037 CGTCTGTTGGAGATGCTCTTAG 58.557 50.000 0.00 0.00 30.78 2.18
2817 4808 3.194062 GTCTGTTGGAGATGCTCTTAGC 58.806 50.000 0.00 0.00 42.82 3.09
2818 4809 3.102972 TCTGTTGGAGATGCTCTTAGCT 58.897 45.455 0.00 0.00 42.97 3.32
2819 4810 4.098654 GTCTGTTGGAGATGCTCTTAGCTA 59.901 45.833 0.03 0.00 42.97 3.32
2820 4811 4.340666 TCTGTTGGAGATGCTCTTAGCTAG 59.659 45.833 0.03 0.00 42.97 3.42
2821 4812 3.386078 TGTTGGAGATGCTCTTAGCTAGG 59.614 47.826 0.00 0.00 42.97 3.02
2822 4813 3.320610 TGGAGATGCTCTTAGCTAGGT 57.679 47.619 2.43 0.00 42.97 3.08
2823 4814 4.455070 TGGAGATGCTCTTAGCTAGGTA 57.545 45.455 2.43 0.00 42.97 3.08
2824 4815 4.402829 TGGAGATGCTCTTAGCTAGGTAG 58.597 47.826 2.43 1.04 42.97 3.18
2825 4816 3.761752 GGAGATGCTCTTAGCTAGGTAGG 59.238 52.174 4.77 4.77 42.97 3.18
2826 4817 4.403734 GAGATGCTCTTAGCTAGGTAGGT 58.596 47.826 10.47 0.00 42.97 3.08
2827 4818 5.515184 GGAGATGCTCTTAGCTAGGTAGGTA 60.515 48.000 10.47 2.43 42.97 3.08
2828 4819 5.566469 AGATGCTCTTAGCTAGGTAGGTAG 58.434 45.833 10.47 8.08 42.97 3.18
2829 4820 4.792513 TGCTCTTAGCTAGGTAGGTAGT 57.207 45.455 10.47 0.00 42.97 2.73
2830 4821 5.901413 TGCTCTTAGCTAGGTAGGTAGTA 57.099 43.478 10.47 4.68 42.97 1.82
2831 4822 5.867330 TGCTCTTAGCTAGGTAGGTAGTAG 58.133 45.833 10.47 2.80 42.97 2.57
2832 4823 5.221884 TGCTCTTAGCTAGGTAGGTAGTAGG 60.222 48.000 10.47 0.00 42.97 3.18
2833 4824 5.012975 GCTCTTAGCTAGGTAGGTAGTAGGA 59.987 48.000 10.47 0.00 38.45 2.94
2834 4825 6.684897 TCTTAGCTAGGTAGGTAGTAGGAG 57.315 45.833 10.47 0.00 37.55 3.69
2835 4826 6.149616 TCTTAGCTAGGTAGGTAGTAGGAGT 58.850 44.000 10.47 0.00 37.55 3.85
2836 4827 7.309091 TCTTAGCTAGGTAGGTAGTAGGAGTA 58.691 42.308 10.47 0.00 37.55 2.59
2837 4828 7.791766 TCTTAGCTAGGTAGGTAGTAGGAGTAA 59.208 40.741 10.47 0.00 37.55 2.24
2838 4829 6.838401 AGCTAGGTAGGTAGTAGGAGTAAA 57.162 41.667 0.00 0.00 31.28 2.01
2839 4830 6.600388 AGCTAGGTAGGTAGTAGGAGTAAAC 58.400 44.000 0.00 0.00 31.28 2.01
2840 4831 6.159398 AGCTAGGTAGGTAGTAGGAGTAAACA 59.841 42.308 0.00 0.00 31.28 2.83
2841 4832 6.830838 GCTAGGTAGGTAGTAGGAGTAAACAA 59.169 42.308 0.00 0.00 0.00 2.83
2842 4833 7.013178 GCTAGGTAGGTAGTAGGAGTAAACAAG 59.987 44.444 0.00 0.00 0.00 3.16
2843 4834 6.798766 AGGTAGGTAGTAGGAGTAAACAAGT 58.201 40.000 0.00 0.00 0.00 3.16
2844 4835 7.933223 AGGTAGGTAGTAGGAGTAAACAAGTA 58.067 38.462 0.00 0.00 0.00 2.24
2845 4836 8.052141 AGGTAGGTAGTAGGAGTAAACAAGTAG 58.948 40.741 0.00 0.00 0.00 2.57
2846 4837 7.831690 GGTAGGTAGTAGGAGTAAACAAGTAGT 59.168 40.741 0.00 0.00 0.00 2.73
2847 4838 9.892130 GTAGGTAGTAGGAGTAAACAAGTAGTA 57.108 37.037 0.00 0.00 0.00 1.82
2849 4840 9.813826 AGGTAGTAGGAGTAAACAAGTAGTAAA 57.186 33.333 0.00 0.00 0.00 2.01
2874 4865 9.804977 AAAGAATATTAAGAGATGGATCCCAAG 57.195 33.333 9.90 0.00 36.95 3.61
2875 4866 8.748179 AGAATATTAAGAGATGGATCCCAAGA 57.252 34.615 9.90 0.00 36.95 3.02
2876 4867 8.824783 AGAATATTAAGAGATGGATCCCAAGAG 58.175 37.037 9.90 0.00 36.95 2.85
2877 4868 5.839517 ATTAAGAGATGGATCCCAAGAGG 57.160 43.478 9.90 0.00 36.95 3.69
2887 4878 2.840640 TCCCAAGAGGATACGGAAGA 57.159 50.000 0.00 0.00 40.93 2.87
2888 4879 3.110293 TCCCAAGAGGATACGGAAGAA 57.890 47.619 0.00 0.00 40.93 2.52
2889 4880 2.764572 TCCCAAGAGGATACGGAAGAAC 59.235 50.000 0.00 0.00 40.93 3.01
2890 4881 2.158943 CCCAAGAGGATACGGAAGAACC 60.159 54.545 0.00 0.00 46.39 3.62
2891 4882 2.766828 CCAAGAGGATACGGAAGAACCT 59.233 50.000 0.00 0.00 46.39 3.50
2892 4883 3.430929 CCAAGAGGATACGGAAGAACCTG 60.431 52.174 0.00 0.00 46.39 4.00
2893 4884 1.757699 AGAGGATACGGAAGAACCTGC 59.242 52.381 0.00 0.00 46.39 4.85
2894 4885 1.480954 GAGGATACGGAAGAACCTGCA 59.519 52.381 0.00 0.00 46.39 4.41
2895 4886 1.207329 AGGATACGGAAGAACCTGCAC 59.793 52.381 0.00 0.00 46.39 4.57
2896 4887 1.066430 GGATACGGAAGAACCTGCACA 60.066 52.381 0.00 0.00 36.31 4.57
2897 4888 2.420129 GGATACGGAAGAACCTGCACAT 60.420 50.000 0.00 0.00 36.31 3.21
2898 4889 2.093306 TACGGAAGAACCTGCACATG 57.907 50.000 0.00 0.00 36.31 3.21
2899 4890 1.237285 ACGGAAGAACCTGCACATGC 61.237 55.000 0.00 0.00 42.50 4.06
2917 4908 0.588252 GCATGTATGCGTCCATGACC 59.412 55.000 15.07 0.00 44.67 4.02
2918 4909 1.952193 CATGTATGCGTCCATGACCA 58.048 50.000 5.59 0.00 40.70 4.02
2919 4910 1.599071 CATGTATGCGTCCATGACCAC 59.401 52.381 5.59 0.00 40.70 4.16
2920 4911 0.459411 TGTATGCGTCCATGACCACG 60.459 55.000 0.00 0.46 39.09 4.94
2921 4912 0.459585 GTATGCGTCCATGACCACGT 60.460 55.000 11.75 0.00 38.32 4.49
2922 4913 0.459411 TATGCGTCCATGACCACGTG 60.459 55.000 9.08 9.08 38.32 4.49
2923 4914 2.048597 GCGTCCATGACCACGTGA 60.049 61.111 19.30 0.00 38.32 4.35
2924 4915 2.380410 GCGTCCATGACCACGTGAC 61.380 63.158 19.30 11.34 38.32 3.67
2925 4916 1.006688 CGTCCATGACCACGTGACA 60.007 57.895 19.30 16.83 35.25 3.58
2926 4917 0.598942 CGTCCATGACCACGTGACAA 60.599 55.000 19.30 1.31 35.25 3.18
2927 4918 1.148310 GTCCATGACCACGTGACAAG 58.852 55.000 19.30 13.19 35.25 3.16
2928 4919 0.602638 TCCATGACCACGTGACAAGC 60.603 55.000 19.30 1.63 35.25 4.01
2929 4920 1.492873 CATGACCACGTGACAAGCG 59.507 57.895 19.30 0.71 35.25 4.68
2930 4921 1.069090 ATGACCACGTGACAAGCGT 59.931 52.632 19.30 4.63 43.90 5.07
2936 4927 3.365976 ACGTGACAAGCGTGGTAAA 57.634 47.368 4.26 0.00 41.33 2.01
2937 4928 1.654317 ACGTGACAAGCGTGGTAAAA 58.346 45.000 4.26 0.00 41.33 1.52
2938 4929 1.595794 ACGTGACAAGCGTGGTAAAAG 59.404 47.619 4.26 0.00 41.33 2.27
2939 4930 1.659211 CGTGACAAGCGTGGTAAAAGC 60.659 52.381 4.26 0.00 0.00 3.51
2940 4931 1.332375 GTGACAAGCGTGGTAAAAGCA 59.668 47.619 4.26 0.00 35.46 3.91
2941 4932 2.017782 TGACAAGCGTGGTAAAAGCAA 58.982 42.857 4.26 0.00 35.46 3.91
2942 4933 2.621055 TGACAAGCGTGGTAAAAGCAAT 59.379 40.909 4.26 0.00 35.46 3.56
2943 4934 3.234386 GACAAGCGTGGTAAAAGCAATC 58.766 45.455 4.26 0.00 35.46 2.67
2944 4935 2.884639 ACAAGCGTGGTAAAAGCAATCT 59.115 40.909 4.26 0.00 35.46 2.40
2945 4936 3.058224 ACAAGCGTGGTAAAAGCAATCTC 60.058 43.478 4.26 0.00 35.46 2.75
2946 4937 2.778299 AGCGTGGTAAAAGCAATCTCA 58.222 42.857 0.00 0.00 35.46 3.27
2947 4938 3.146066 AGCGTGGTAAAAGCAATCTCAA 58.854 40.909 0.00 0.00 35.46 3.02
2948 4939 3.568007 AGCGTGGTAAAAGCAATCTCAAA 59.432 39.130 0.00 0.00 35.46 2.69
2949 4940 4.218417 AGCGTGGTAAAAGCAATCTCAAAT 59.782 37.500 0.00 0.00 35.46 2.32
2950 4941 4.923281 GCGTGGTAAAAGCAATCTCAAATT 59.077 37.500 0.00 0.00 32.90 1.82
2951 4942 5.164061 GCGTGGTAAAAGCAATCTCAAATTG 60.164 40.000 0.00 0.00 32.90 2.32
2952 4943 6.148948 CGTGGTAAAAGCAATCTCAAATTGA 58.851 36.000 0.00 0.00 0.00 2.57
2953 4944 6.088085 CGTGGTAAAAGCAATCTCAAATTGAC 59.912 38.462 2.07 0.00 0.00 3.18
2954 4945 6.922957 GTGGTAAAAGCAATCTCAAATTGACA 59.077 34.615 2.07 0.00 0.00 3.58
2955 4946 7.437862 GTGGTAAAAGCAATCTCAAATTGACAA 59.562 33.333 2.07 0.00 0.00 3.18
2956 4947 7.984050 TGGTAAAAGCAATCTCAAATTGACAAA 59.016 29.630 2.07 0.00 0.00 2.83
2957 4948 8.825745 GGTAAAAGCAATCTCAAATTGACAAAA 58.174 29.630 2.07 0.00 0.00 2.44
2960 4951 8.441312 AAAGCAATCTCAAATTGACAAAATGT 57.559 26.923 2.07 0.00 0.00 2.71
2961 4952 9.545105 AAAGCAATCTCAAATTGACAAAATGTA 57.455 25.926 2.07 0.00 0.00 2.29
2962 4953 9.715121 AAGCAATCTCAAATTGACAAAATGTAT 57.285 25.926 2.07 0.00 0.00 2.29
2963 4954 9.146984 AGCAATCTCAAATTGACAAAATGTATG 57.853 29.630 2.07 0.00 0.00 2.39
2964 4955 7.901377 GCAATCTCAAATTGACAAAATGTATGC 59.099 33.333 2.07 2.17 0.00 3.14
2965 4956 7.745022 ATCTCAAATTGACAAAATGTATGCG 57.255 32.000 0.00 0.00 0.00 4.73
2966 4957 6.676950 TCTCAAATTGACAAAATGTATGCGT 58.323 32.000 0.00 0.00 0.00 5.24
2967 4958 6.801377 TCTCAAATTGACAAAATGTATGCGTC 59.199 34.615 0.00 0.00 0.00 5.19
2968 4959 5.861251 TCAAATTGACAAAATGTATGCGTCC 59.139 36.000 0.00 0.00 0.00 4.79
2969 4960 5.384063 AATTGACAAAATGTATGCGTCCA 57.616 34.783 0.00 0.00 0.00 4.02
2970 4961 3.822594 TGACAAAATGTATGCGTCCAC 57.177 42.857 0.00 0.00 0.00 4.02
2971 4962 2.158645 TGACAAAATGTATGCGTCCACG 59.841 45.455 0.00 0.00 43.27 4.94
2972 4963 1.466950 ACAAAATGTATGCGTCCACGG 59.533 47.619 0.55 0.00 40.23 4.94
2973 4964 0.450184 AAAATGTATGCGTCCACGGC 59.550 50.000 0.55 0.00 40.23 5.68
2974 4965 1.373590 AAATGTATGCGTCCACGGCC 61.374 55.000 0.55 0.00 40.23 6.13
2975 4966 2.252072 AATGTATGCGTCCACGGCCT 62.252 55.000 0.00 0.00 40.23 5.19
2976 4967 2.890474 GTATGCGTCCACGGCCTG 60.890 66.667 0.00 0.00 40.23 4.85
2977 4968 3.387091 TATGCGTCCACGGCCTGT 61.387 61.111 0.00 0.00 40.23 4.00
2978 4969 3.365291 TATGCGTCCACGGCCTGTC 62.365 63.158 0.00 0.00 40.23 3.51
2980 4971 3.755628 GCGTCCACGGCCTGTCTA 61.756 66.667 0.00 0.00 40.23 2.59
2981 4972 3.077519 GCGTCCACGGCCTGTCTAT 62.078 63.158 0.00 0.00 40.23 1.98
2982 4973 1.226974 CGTCCACGGCCTGTCTATG 60.227 63.158 0.00 0.00 35.37 2.23
2983 4974 1.144057 GTCCACGGCCTGTCTATGG 59.856 63.158 0.00 0.00 0.00 2.74
2990 4981 3.239861 GCCTGTCTATGGCCTATGC 57.760 57.895 3.32 0.00 44.32 3.14
2991 4982 0.397941 GCCTGTCTATGGCCTATGCA 59.602 55.000 3.32 0.00 44.32 3.96
2992 4983 1.004044 GCCTGTCTATGGCCTATGCAT 59.996 52.381 3.32 3.79 44.32 3.96
2993 4984 2.553904 GCCTGTCTATGGCCTATGCATT 60.554 50.000 3.54 0.00 44.32 3.56
2994 4985 3.079578 CCTGTCTATGGCCTATGCATTG 58.920 50.000 3.54 1.90 40.13 2.82
2995 4986 2.486982 CTGTCTATGGCCTATGCATTGC 59.513 50.000 3.54 8.54 40.13 3.56
2996 4987 2.158638 TGTCTATGGCCTATGCATTGCA 60.159 45.455 14.72 14.72 44.86 4.08
3011 5002 2.025156 GCATTTCGCATGCTCCGG 59.975 61.111 17.13 0.00 41.52 5.14
3012 5003 2.764314 GCATTTCGCATGCTCCGGT 61.764 57.895 17.13 0.00 41.52 5.28
3013 5004 1.063006 CATTTCGCATGCTCCGGTG 59.937 57.895 17.13 0.00 0.00 4.94
3014 5005 2.764314 ATTTCGCATGCTCCGGTGC 61.764 57.895 21.41 21.41 37.97 5.01
3037 5028 3.178592 CGCATGCGCTCGTGTGTA 61.179 61.111 29.09 0.00 35.55 2.90
3038 5029 2.516589 CGCATGCGCTCGTGTGTAT 61.517 57.895 29.09 0.00 35.55 2.29
3039 5030 1.715585 GCATGCGCTCGTGTGTATT 59.284 52.632 9.73 0.00 34.30 1.89
3040 5031 0.927537 GCATGCGCTCGTGTGTATTA 59.072 50.000 9.73 0.00 34.30 0.98
3041 5032 1.332028 GCATGCGCTCGTGTGTATTAC 60.332 52.381 9.73 0.00 34.30 1.89
3042 5033 1.257936 CATGCGCTCGTGTGTATTACC 59.742 52.381 9.73 0.00 0.00 2.85
3043 5034 0.528924 TGCGCTCGTGTGTATTACCT 59.471 50.000 9.73 0.00 0.00 3.08
3044 5035 1.197910 GCGCTCGTGTGTATTACCTC 58.802 55.000 0.00 0.00 0.00 3.85
3045 5036 1.202268 GCGCTCGTGTGTATTACCTCT 60.202 52.381 0.00 0.00 0.00 3.69
3046 5037 2.451132 CGCTCGTGTGTATTACCTCTG 58.549 52.381 0.00 0.00 0.00 3.35
3047 5038 2.159421 CGCTCGTGTGTATTACCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
3048 5039 3.436496 GCTCGTGTGTATTACCTCTGTC 58.564 50.000 0.00 0.00 0.00 3.51
3049 5040 3.128938 GCTCGTGTGTATTACCTCTGTCT 59.871 47.826 0.00 0.00 0.00 3.41
3050 5041 4.334759 GCTCGTGTGTATTACCTCTGTCTA 59.665 45.833 0.00 0.00 0.00 2.59
3051 5042 5.504337 GCTCGTGTGTATTACCTCTGTCTAG 60.504 48.000 0.00 0.00 0.00 2.43
3052 5043 5.737860 TCGTGTGTATTACCTCTGTCTAGA 58.262 41.667 0.00 0.00 0.00 2.43
3104 5095 9.716507 ATGAGCGTGTTTAAATACATTTGTATC 57.283 29.630 14.45 3.25 40.10 2.24
3105 5096 8.941977 TGAGCGTGTTTAAATACATTTGTATCT 58.058 29.630 14.45 0.00 40.10 1.98
3139 5130 9.856162 TCTAAAATAAGTAAGAGGGTGTTTGTT 57.144 29.630 0.00 0.00 0.00 2.83
3142 5133 7.520451 AATAAGTAAGAGGGTGTTTGTTTCC 57.480 36.000 0.00 0.00 0.00 3.13
3143 5134 4.513406 AGTAAGAGGGTGTTTGTTTCCA 57.487 40.909 0.00 0.00 0.00 3.53
3144 5135 4.461198 AGTAAGAGGGTGTTTGTTTCCAG 58.539 43.478 0.00 0.00 0.00 3.86
3145 5136 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
3146 5137 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
3147 5138 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
3148 5139 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
3149 5140 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
3150 5141 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
3151 5142 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
3152 5143 4.149598 GGTGTTTGTTTCCAGGGACTTAT 58.850 43.478 0.00 0.00 34.60 1.73
3153 5144 4.022329 GGTGTTTGTTTCCAGGGACTTATG 60.022 45.833 0.00 0.00 34.60 1.90
3154 5145 4.022329 GTGTTTGTTTCCAGGGACTTATGG 60.022 45.833 0.00 0.00 34.60 2.74
3155 5146 3.449746 TTGTTTCCAGGGACTTATGGG 57.550 47.619 0.00 0.00 34.60 4.00
3156 5147 2.354328 TGTTTCCAGGGACTTATGGGT 58.646 47.619 0.00 0.00 34.60 4.51
3157 5148 2.307686 TGTTTCCAGGGACTTATGGGTC 59.692 50.000 0.00 0.00 34.60 4.46
3158 5149 2.576648 GTTTCCAGGGACTTATGGGTCT 59.423 50.000 0.00 0.00 34.60 3.85
3159 5150 3.778629 GTTTCCAGGGACTTATGGGTCTA 59.221 47.826 0.00 0.00 34.60 2.59
3160 5151 3.330126 TCCAGGGACTTATGGGTCTAG 57.670 52.381 0.00 0.00 34.60 2.43
3161 5152 2.090719 TCCAGGGACTTATGGGTCTAGG 60.091 54.545 0.00 0.00 34.60 3.02
3162 5153 2.330216 CAGGGACTTATGGGTCTAGGG 58.670 57.143 0.00 0.00 34.60 3.53
3163 5154 2.090719 CAGGGACTTATGGGTCTAGGGA 60.091 54.545 0.00 0.00 34.60 4.20
3164 5155 2.090663 AGGGACTTATGGGTCTAGGGAC 60.091 54.545 0.00 0.00 37.22 4.46
3165 5156 2.090663 GGGACTTATGGGTCTAGGGACT 60.091 54.545 0.00 0.00 41.82 3.85
3166 5157 3.632906 GGGACTTATGGGTCTAGGGACTT 60.633 52.174 0.00 0.00 41.82 3.01
3167 5158 4.388346 GGGACTTATGGGTCTAGGGACTTA 60.388 50.000 0.00 0.00 41.82 2.24
3168 5159 5.214293 GGACTTATGGGTCTAGGGACTTAA 58.786 45.833 0.00 0.00 41.82 1.85
3169 5160 5.664457 GGACTTATGGGTCTAGGGACTTAAA 59.336 44.000 0.00 0.00 41.82 1.52
3170 5161 6.157471 GGACTTATGGGTCTAGGGACTTAAAA 59.843 42.308 0.00 0.00 41.82 1.52
3171 5162 7.311486 GGACTTATGGGTCTAGGGACTTAAAAA 60.311 40.741 0.00 0.00 41.82 1.94
3190 5181 3.451402 AAAGTCCCAATAAGTCCCACC 57.549 47.619 0.00 0.00 0.00 4.61
3191 5182 2.361085 AGTCCCAATAAGTCCCACCT 57.639 50.000 0.00 0.00 0.00 4.00
3192 5183 3.502051 AGTCCCAATAAGTCCCACCTA 57.498 47.619 0.00 0.00 0.00 3.08
3193 5184 3.810623 AGTCCCAATAAGTCCCACCTAA 58.189 45.455 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 9.672864 GTCGCGACTTTAAAATAAAAACAAAAA 57.327 25.926 31.12 0.00 0.00 1.94
106 108 3.072211 CGAACCCCAGAGACCTAAAAAC 58.928 50.000 0.00 0.00 0.00 2.43
225 228 5.977635 TGGAGATGCTATAATATCCAACGG 58.022 41.667 0.00 0.00 43.30 4.44
269 272 2.137395 CACGAATTTCAACGCGCGG 61.137 57.895 35.22 17.77 0.00 6.46
315 318 4.911610 CAGCGCGCATTATTTTATAGCTTT 59.088 37.500 35.10 2.14 0.00 3.51
418 444 1.567746 CCAAATGCCCAAAAGTGCGC 61.568 55.000 0.00 0.00 0.00 6.09
423 449 2.038295 TGGCTTACCAAATGCCCAAAAG 59.962 45.455 0.00 0.00 45.37 2.27
441 467 0.751643 ATGCCGGACCTAACATTGGC 60.752 55.000 5.05 0.00 42.76 4.52
465 491 2.240493 ACGCTTCACTGTAGCACTTT 57.760 45.000 8.23 0.00 38.55 2.66
505 531 2.323968 ACCAGGCGCACAAAAATTTT 57.676 40.000 10.83 0.00 0.00 1.82
687 713 4.093291 CTCGGCCCTGCTCTTGCT 62.093 66.667 0.00 0.00 40.48 3.91
2004 3977 1.375523 GGCGTCCGAGGTGAACAAT 60.376 57.895 0.00 0.00 0.00 2.71
2040 4013 0.733150 CTCTCACCTGCGTCATCGTA 59.267 55.000 0.00 0.00 39.49 3.43
2079 4052 1.004918 AAACTTCCTCTCCCACGCG 60.005 57.895 3.53 3.53 0.00 6.01
2240 4218 1.754803 ACATCTCGTCCATTAGGCGAA 59.245 47.619 0.00 0.00 40.88 4.70
2313 4297 8.865978 TGTACTTATGTCTTTATTAACGCACAG 58.134 33.333 0.00 0.00 0.00 3.66
2363 4353 7.301054 CAGAAGCAACCAGAAAATAGTTGTAG 58.699 38.462 0.00 0.00 42.25 2.74
2364 4354 6.293955 GCAGAAGCAACCAGAAAATAGTTGTA 60.294 38.462 0.00 0.00 42.25 2.41
2365 4355 5.507985 GCAGAAGCAACCAGAAAATAGTTGT 60.508 40.000 0.00 0.00 42.25 3.32
2366 4356 4.919754 GCAGAAGCAACCAGAAAATAGTTG 59.080 41.667 0.00 0.00 42.95 3.16
2367 4357 4.021981 GGCAGAAGCAACCAGAAAATAGTT 60.022 41.667 0.00 0.00 44.61 2.24
2391 4382 7.044966 CGGTCGCAACATTATCAGTTTTTAATC 60.045 37.037 0.00 0.00 0.00 1.75
2408 4399 2.813908 CACCTAGCCGGTCGCAAC 60.814 66.667 1.90 0.00 44.93 4.17
2431 4422 2.076863 GACCCCACAAGAATTCAGTCG 58.923 52.381 8.44 0.00 0.00 4.18
2436 4427 2.814336 GTGACTGACCCCACAAGAATTC 59.186 50.000 0.00 0.00 33.72 2.17
2441 4432 2.348411 AAAGTGACTGACCCCACAAG 57.652 50.000 0.00 0.00 35.84 3.16
2444 4435 1.681264 CCAAAAAGTGACTGACCCCAC 59.319 52.381 0.00 0.00 0.00 4.61
2447 4438 2.552743 GCTACCAAAAAGTGACTGACCC 59.447 50.000 0.00 0.00 0.00 4.46
2448 4439 3.211045 TGCTACCAAAAAGTGACTGACC 58.789 45.455 0.00 0.00 0.00 4.02
2449 4440 4.335594 ACTTGCTACCAAAAAGTGACTGAC 59.664 41.667 0.00 0.00 33.01 3.51
2450 4441 4.523083 ACTTGCTACCAAAAAGTGACTGA 58.477 39.130 0.00 0.00 33.01 3.41
2451 4442 4.900635 ACTTGCTACCAAAAAGTGACTG 57.099 40.909 0.00 0.00 33.01 3.51
2452 4443 6.120220 AGTAACTTGCTACCAAAAAGTGACT 58.880 36.000 0.00 0.00 39.70 3.41
2453 4444 6.373186 AGTAACTTGCTACCAAAAAGTGAC 57.627 37.500 0.00 0.00 36.08 3.67
2454 4445 6.600032 TGAAGTAACTTGCTACCAAAAAGTGA 59.400 34.615 0.00 0.00 34.46 3.41
2455 4446 6.691388 GTGAAGTAACTTGCTACCAAAAAGTG 59.309 38.462 0.00 0.00 34.46 3.16
2456 4447 6.602009 AGTGAAGTAACTTGCTACCAAAAAGT 59.398 34.615 0.00 0.00 35.70 2.66
2457 4448 7.027778 AGTGAAGTAACTTGCTACCAAAAAG 57.972 36.000 0.00 0.00 0.00 2.27
2458 4449 7.399245 AAGTGAAGTAACTTGCTACCAAAAA 57.601 32.000 0.00 0.00 38.95 1.94
2459 4450 7.988599 TCTAAGTGAAGTAACTTGCTACCAAAA 59.011 33.333 0.00 0.00 40.58 2.44
2460 4451 7.502696 TCTAAGTGAAGTAACTTGCTACCAAA 58.497 34.615 0.00 0.00 40.58 3.28
2461 4452 7.058023 TCTAAGTGAAGTAACTTGCTACCAA 57.942 36.000 0.00 0.00 40.58 3.67
2462 4453 6.659745 TCTAAGTGAAGTAACTTGCTACCA 57.340 37.500 0.00 0.00 40.58 3.25
2463 4454 5.577554 GCTCTAAGTGAAGTAACTTGCTACC 59.422 44.000 0.00 0.00 40.58 3.18
2464 4455 6.157211 TGCTCTAAGTGAAGTAACTTGCTAC 58.843 40.000 0.00 0.00 40.58 3.58
2465 4456 6.340962 TGCTCTAAGTGAAGTAACTTGCTA 57.659 37.500 0.00 0.00 40.58 3.49
2466 4457 5.215252 TGCTCTAAGTGAAGTAACTTGCT 57.785 39.130 0.00 0.00 40.58 3.91
2467 4458 5.872070 AGATGCTCTAAGTGAAGTAACTTGC 59.128 40.000 0.00 0.00 40.58 4.01
2468 4459 7.600375 TGAAGATGCTCTAAGTGAAGTAACTTG 59.400 37.037 0.00 0.00 40.58 3.16
2469 4460 7.671302 TGAAGATGCTCTAAGTGAAGTAACTT 58.329 34.615 0.00 0.00 42.89 2.66
2470 4461 7.233389 TGAAGATGCTCTAAGTGAAGTAACT 57.767 36.000 0.00 0.00 0.00 2.24
2471 4462 7.891183 TTGAAGATGCTCTAAGTGAAGTAAC 57.109 36.000 0.00 0.00 0.00 2.50
2472 4463 9.809096 CTATTGAAGATGCTCTAAGTGAAGTAA 57.191 33.333 0.00 0.00 0.00 2.24
2473 4464 8.417106 CCTATTGAAGATGCTCTAAGTGAAGTA 58.583 37.037 0.00 0.00 0.00 2.24
2474 4465 7.093112 ACCTATTGAAGATGCTCTAAGTGAAGT 60.093 37.037 0.00 0.00 0.00 3.01
2475 4466 7.271511 ACCTATTGAAGATGCTCTAAGTGAAG 58.728 38.462 0.00 0.00 0.00 3.02
2476 4467 7.187824 ACCTATTGAAGATGCTCTAAGTGAA 57.812 36.000 0.00 0.00 0.00 3.18
2477 4468 6.798427 ACCTATTGAAGATGCTCTAAGTGA 57.202 37.500 0.00 0.00 0.00 3.41
2478 4469 6.638873 CGTACCTATTGAAGATGCTCTAAGTG 59.361 42.308 0.00 0.00 0.00 3.16
2479 4470 6.736243 GCGTACCTATTGAAGATGCTCTAAGT 60.736 42.308 0.00 0.00 0.00 2.24
2480 4471 5.631512 GCGTACCTATTGAAGATGCTCTAAG 59.368 44.000 0.00 0.00 0.00 2.18
2481 4472 5.529791 GCGTACCTATTGAAGATGCTCTAA 58.470 41.667 0.00 0.00 0.00 2.10
2482 4473 4.320275 CGCGTACCTATTGAAGATGCTCTA 60.320 45.833 0.00 0.00 0.00 2.43
2483 4474 3.551046 CGCGTACCTATTGAAGATGCTCT 60.551 47.826 0.00 0.00 0.00 4.09
2484 4475 2.726760 CGCGTACCTATTGAAGATGCTC 59.273 50.000 0.00 0.00 0.00 4.26
2485 4476 2.545952 CCGCGTACCTATTGAAGATGCT 60.546 50.000 4.92 0.00 0.00 3.79
2486 4477 1.792949 CCGCGTACCTATTGAAGATGC 59.207 52.381 4.92 0.00 0.00 3.91
2487 4478 3.093717 ACCGCGTACCTATTGAAGATG 57.906 47.619 4.92 0.00 0.00 2.90
2488 4479 3.305199 GCTACCGCGTACCTATTGAAGAT 60.305 47.826 4.92 0.00 0.00 2.40
2489 4480 2.033801 GCTACCGCGTACCTATTGAAGA 59.966 50.000 4.92 0.00 0.00 2.87
2490 4481 2.391879 GCTACCGCGTACCTATTGAAG 58.608 52.381 4.92 0.00 0.00 3.02
2491 4482 2.497107 GCTACCGCGTACCTATTGAA 57.503 50.000 4.92 0.00 0.00 2.69
2522 4513 0.249238 TCGGCGCTGCAAACATTTTT 60.249 45.000 12.58 0.00 0.00 1.94
2523 4514 0.249238 TTCGGCGCTGCAAACATTTT 60.249 45.000 12.58 0.00 0.00 1.82
2524 4515 0.249238 TTTCGGCGCTGCAAACATTT 60.249 45.000 12.58 0.00 0.00 2.32
2525 4516 0.038343 ATTTCGGCGCTGCAAACATT 60.038 45.000 12.58 0.00 0.00 2.71
2526 4517 0.808125 TATTTCGGCGCTGCAAACAT 59.192 45.000 12.58 1.14 0.00 2.71
2527 4518 0.167908 CTATTTCGGCGCTGCAAACA 59.832 50.000 12.58 1.73 0.00 2.83
2528 4519 1.133946 GCTATTTCGGCGCTGCAAAC 61.134 55.000 12.58 0.00 0.00 2.93
2529 4520 1.136565 GCTATTTCGGCGCTGCAAA 59.863 52.632 12.58 13.26 0.00 3.68
2530 4521 2.791256 GCTATTTCGGCGCTGCAA 59.209 55.556 12.58 7.78 0.00 4.08
2531 4522 3.563088 CGCTATTTCGGCGCTGCA 61.563 61.111 12.58 0.00 45.83 4.41
2558 4549 0.667792 AACCTCTTCGTCGCTCTTGC 60.668 55.000 0.00 0.00 0.00 4.01
2559 4550 1.784525 AAACCTCTTCGTCGCTCTTG 58.215 50.000 0.00 0.00 0.00 3.02
2560 4551 2.223971 TGAAAACCTCTTCGTCGCTCTT 60.224 45.455 0.00 0.00 0.00 2.85
2561 4552 1.340248 TGAAAACCTCTTCGTCGCTCT 59.660 47.619 0.00 0.00 0.00 4.09
2562 4553 1.779569 TGAAAACCTCTTCGTCGCTC 58.220 50.000 0.00 0.00 0.00 5.03
2563 4554 2.135933 CTTGAAAACCTCTTCGTCGCT 58.864 47.619 0.00 0.00 0.00 4.93
2564 4555 2.132762 TCTTGAAAACCTCTTCGTCGC 58.867 47.619 0.00 0.00 0.00 5.19
2565 4556 3.423645 GCATCTTGAAAACCTCTTCGTCG 60.424 47.826 0.00 0.00 0.00 5.12
2566 4557 3.498397 TGCATCTTGAAAACCTCTTCGTC 59.502 43.478 0.00 0.00 0.00 4.20
2567 4558 3.476552 TGCATCTTGAAAACCTCTTCGT 58.523 40.909 0.00 0.00 0.00 3.85
2568 4559 4.691860 ATGCATCTTGAAAACCTCTTCG 57.308 40.909 0.00 0.00 0.00 3.79
2569 4560 8.703336 GTTTTTATGCATCTTGAAAACCTCTTC 58.297 33.333 19.43 4.79 35.34 2.87
2570 4561 8.203485 TGTTTTTATGCATCTTGAAAACCTCTT 58.797 29.630 23.29 0.00 38.67 2.85
2571 4562 7.725251 TGTTTTTATGCATCTTGAAAACCTCT 58.275 30.769 23.29 0.00 38.67 3.69
2572 4563 7.945033 TGTTTTTATGCATCTTGAAAACCTC 57.055 32.000 23.29 12.10 38.67 3.85
2573 4564 8.149647 TCATGTTTTTATGCATCTTGAAAACCT 58.850 29.630 23.29 16.92 38.67 3.50
2574 4565 8.309163 TCATGTTTTTATGCATCTTGAAAACC 57.691 30.769 23.29 12.37 38.67 3.27
2575 4566 9.749490 CATCATGTTTTTATGCATCTTGAAAAC 57.251 29.630 21.41 21.41 39.43 2.43
2576 4567 8.444715 GCATCATGTTTTTATGCATCTTGAAAA 58.555 29.630 0.19 1.20 44.27 2.29
2577 4568 7.064847 GGCATCATGTTTTTATGCATCTTGAAA 59.935 33.333 15.71 0.00 46.18 2.69
2578 4569 6.535865 GGCATCATGTTTTTATGCATCTTGAA 59.464 34.615 15.71 0.00 46.18 2.69
2579 4570 6.044046 GGCATCATGTTTTTATGCATCTTGA 58.956 36.000 15.71 2.87 46.18 3.02
2580 4571 5.813157 TGGCATCATGTTTTTATGCATCTTG 59.187 36.000 15.71 0.00 46.18 3.02
2581 4572 5.979993 TGGCATCATGTTTTTATGCATCTT 58.020 33.333 15.71 0.00 46.18 2.40
2582 4573 5.601583 TGGCATCATGTTTTTATGCATCT 57.398 34.783 15.71 0.00 46.18 2.90
2583 4574 6.655062 CATTGGCATCATGTTTTTATGCATC 58.345 36.000 15.71 3.19 46.18 3.91
2584 4575 5.008217 GCATTGGCATCATGTTTTTATGCAT 59.992 36.000 15.71 3.79 46.18 3.96
2585 4576 4.333095 GCATTGGCATCATGTTTTTATGCA 59.667 37.500 15.71 0.00 46.18 3.96
2586 4577 4.551217 CGCATTGGCATCATGTTTTTATGC 60.551 41.667 7.59 7.59 44.16 3.14
2587 4578 4.025563 CCGCATTGGCATCATGTTTTTATG 60.026 41.667 1.47 0.00 41.24 1.90
2588 4579 4.121317 CCGCATTGGCATCATGTTTTTAT 58.879 39.130 1.47 0.00 41.24 1.40
2589 4580 3.056250 ACCGCATTGGCATCATGTTTTTA 60.056 39.130 1.47 0.00 43.94 1.52
2590 4581 2.289569 ACCGCATTGGCATCATGTTTTT 60.290 40.909 1.47 0.00 43.94 1.94
2591 4582 1.275856 ACCGCATTGGCATCATGTTTT 59.724 42.857 1.47 0.00 43.94 2.43
2592 4583 0.896923 ACCGCATTGGCATCATGTTT 59.103 45.000 1.47 0.00 43.94 2.83
2593 4584 0.173935 CACCGCATTGGCATCATGTT 59.826 50.000 1.47 0.00 43.94 2.71
2594 4585 1.669049 CCACCGCATTGGCATCATGT 61.669 55.000 1.47 0.00 43.94 3.21
2595 4586 1.066752 CCACCGCATTGGCATCATG 59.933 57.895 0.00 0.00 43.94 3.07
2596 4587 3.528853 CCACCGCATTGGCATCAT 58.471 55.556 0.00 0.00 43.94 2.45
2614 4605 4.673375 AAGCTGCTGCAGGTGGGG 62.673 66.667 32.09 7.53 41.59 4.96
2615 4606 2.753009 TACAAGCTGCTGCAGGTGGG 62.753 60.000 32.60 27.84 41.59 4.61
2616 4607 1.302752 TACAAGCTGCTGCAGGTGG 60.303 57.895 32.09 30.65 41.59 4.61
2617 4608 1.871772 GTACAAGCTGCTGCAGGTG 59.128 57.895 32.09 25.74 41.59 4.00
2618 4609 1.669115 CGTACAAGCTGCTGCAGGT 60.669 57.895 27.10 27.10 44.48 4.00
2619 4610 2.393768 CCGTACAAGCTGCTGCAGG 61.394 63.158 29.05 16.06 42.74 4.85
2620 4611 0.742281 ATCCGTACAAGCTGCTGCAG 60.742 55.000 24.80 24.80 42.74 4.41
2621 4612 0.534873 TATCCGTACAAGCTGCTGCA 59.465 50.000 18.42 0.88 42.74 4.41
2622 4613 1.651987 TTATCCGTACAAGCTGCTGC 58.348 50.000 1.35 7.62 40.05 5.25
2623 4614 2.802816 GGATTATCCGTACAAGCTGCTG 59.197 50.000 1.35 0.00 0.00 4.41
2624 4615 3.113260 GGATTATCCGTACAAGCTGCT 57.887 47.619 0.00 0.00 0.00 4.24
2636 4627 0.179040 TTTGGGACGCCGGATTATCC 60.179 55.000 5.05 5.29 0.00 2.59
2637 4628 1.892209 ATTTGGGACGCCGGATTATC 58.108 50.000 5.05 0.00 0.00 1.75
2638 4629 2.358322 AATTTGGGACGCCGGATTAT 57.642 45.000 5.05 0.00 0.00 1.28
2639 4630 1.746220 CAAATTTGGGACGCCGGATTA 59.254 47.619 5.05 0.00 0.00 1.75
2640 4631 0.530288 CAAATTTGGGACGCCGGATT 59.470 50.000 5.05 0.00 0.00 3.01
2641 4632 1.944234 GCAAATTTGGGACGCCGGAT 61.944 55.000 19.47 0.00 0.00 4.18
2642 4633 2.631580 GCAAATTTGGGACGCCGGA 61.632 57.895 19.47 0.00 0.00 5.14
2643 4634 2.126110 GCAAATTTGGGACGCCGG 60.126 61.111 19.47 0.00 0.00 6.13
2644 4635 1.444212 CTGCAAATTTGGGACGCCG 60.444 57.895 19.47 0.00 0.00 6.46
2645 4636 1.737735 GCTGCAAATTTGGGACGCC 60.738 57.895 19.47 2.57 0.00 5.68
2646 4637 0.733909 GAGCTGCAAATTTGGGACGC 60.734 55.000 19.47 5.45 0.00 5.19
2647 4638 0.597568 TGAGCTGCAAATTTGGGACG 59.402 50.000 19.47 0.00 0.00 4.79
2648 4639 1.670967 GCTGAGCTGCAAATTTGGGAC 60.671 52.381 19.47 3.99 0.00 4.46
2649 4640 0.604578 GCTGAGCTGCAAATTTGGGA 59.395 50.000 19.47 1.47 0.00 4.37
2650 4641 0.319083 TGCTGAGCTGCAAATTTGGG 59.681 50.000 19.47 0.00 40.29 4.12
2651 4642 1.000506 ACTGCTGAGCTGCAAATTTGG 59.999 47.619 19.47 5.27 42.83 3.28
2652 4643 2.433868 ACTGCTGAGCTGCAAATTTG 57.566 45.000 14.03 14.03 42.83 2.32
2653 4644 2.606308 CGAACTGCTGAGCTGCAAATTT 60.606 45.455 11.41 0.00 42.83 1.82
2654 4645 1.068748 CGAACTGCTGAGCTGCAAATT 60.069 47.619 11.41 0.00 42.83 1.82
2655 4646 0.520404 CGAACTGCTGAGCTGCAAAT 59.480 50.000 11.41 0.00 42.83 2.32
2656 4647 1.944035 CGAACTGCTGAGCTGCAAA 59.056 52.632 11.41 0.00 42.83 3.68
2657 4648 2.610694 GCGAACTGCTGAGCTGCAA 61.611 57.895 11.41 0.00 42.83 4.08
2658 4649 3.046087 GCGAACTGCTGAGCTGCA 61.046 61.111 11.41 0.00 41.73 4.41
2667 4658 4.527157 GGCATGCGAGCGAACTGC 62.527 66.667 12.44 0.00 46.98 4.40
2668 4659 3.869272 GGGCATGCGAGCGAACTG 61.869 66.667 12.44 0.00 34.64 3.16
2669 4660 3.687321 ATGGGCATGCGAGCGAACT 62.687 57.895 12.44 0.00 34.64 3.01
2670 4661 3.204827 ATGGGCATGCGAGCGAAC 61.205 61.111 12.44 0.00 34.64 3.95
2671 4662 3.204119 CATGGGCATGCGAGCGAA 61.204 61.111 12.44 0.00 34.64 4.70
2679 4670 0.457035 ACTTTTAGCGCATGGGCATG 59.543 50.000 33.01 19.90 41.24 4.06
2680 4671 0.457035 CACTTTTAGCGCATGGGCAT 59.543 50.000 33.01 20.99 41.24 4.40
2681 4672 0.893270 ACACTTTTAGCGCATGGGCA 60.893 50.000 33.01 18.06 41.24 5.36
2682 4673 0.243636 AACACTTTTAGCGCATGGGC 59.756 50.000 26.04 26.04 0.00 5.36
2683 4674 2.723124 AAACACTTTTAGCGCATGGG 57.277 45.000 11.47 5.19 0.00 4.00
2684 4675 3.362888 GCAAAAACACTTTTAGCGCATGG 60.363 43.478 11.47 0.00 32.85 3.66
2685 4676 3.658852 CGCAAAAACACTTTTAGCGCATG 60.659 43.478 11.47 0.00 41.00 4.06
2686 4677 2.470999 CGCAAAAACACTTTTAGCGCAT 59.529 40.909 11.47 0.00 41.00 4.73
2687 4678 1.849219 CGCAAAAACACTTTTAGCGCA 59.151 42.857 11.47 0.00 41.00 6.09
2688 4679 1.849829 ACGCAAAAACACTTTTAGCGC 59.150 42.857 18.22 0.00 45.45 5.92
2689 4680 2.346285 GCACGCAAAAACACTTTTAGCG 60.346 45.455 17.40 17.40 46.11 4.26
2690 4681 2.857748 AGCACGCAAAAACACTTTTAGC 59.142 40.909 0.00 0.00 32.85 3.09
2691 4682 4.351192 AGAGCACGCAAAAACACTTTTAG 58.649 39.130 0.00 0.00 32.85 1.85
2692 4683 4.364415 AGAGCACGCAAAAACACTTTTA 57.636 36.364 0.00 0.00 32.85 1.52
2693 4684 3.230743 AGAGCACGCAAAAACACTTTT 57.769 38.095 0.00 0.00 35.02 2.27
2694 4685 2.939460 AGAGCACGCAAAAACACTTT 57.061 40.000 0.00 0.00 0.00 2.66
2695 4686 4.568152 AATAGAGCACGCAAAAACACTT 57.432 36.364 0.00 0.00 0.00 3.16
2696 4687 4.568152 AAATAGAGCACGCAAAAACACT 57.432 36.364 0.00 0.00 0.00 3.55
2697 4688 5.683743 TGTAAAATAGAGCACGCAAAAACAC 59.316 36.000 0.00 0.00 0.00 3.32
2698 4689 5.822278 TGTAAAATAGAGCACGCAAAAACA 58.178 33.333 0.00 0.00 0.00 2.83
2699 4690 5.164187 GCTGTAAAATAGAGCACGCAAAAAC 60.164 40.000 2.03 0.00 43.85 2.43
2700 4691 4.915085 GCTGTAAAATAGAGCACGCAAAAA 59.085 37.500 2.03 0.00 43.85 1.94
2701 4692 4.472286 GCTGTAAAATAGAGCACGCAAAA 58.528 39.130 2.03 0.00 43.85 2.44
2702 4693 4.078363 GCTGTAAAATAGAGCACGCAAA 57.922 40.909 2.03 0.00 43.85 3.68
2703 4694 3.740044 GCTGTAAAATAGAGCACGCAA 57.260 42.857 2.03 0.00 43.85 4.85
2759 4750 5.971202 CCTCGTGCGCTAAATATCAATTTTT 59.029 36.000 9.73 0.00 36.67 1.94
2760 4751 5.510671 CCTCGTGCGCTAAATATCAATTTT 58.489 37.500 9.73 0.00 36.67 1.82
2761 4752 4.554723 GCCTCGTGCGCTAAATATCAATTT 60.555 41.667 9.73 0.00 38.80 1.82
2762 4753 3.058914 GCCTCGTGCGCTAAATATCAATT 60.059 43.478 9.73 0.00 0.00 2.32
2763 4754 2.480419 GCCTCGTGCGCTAAATATCAAT 59.520 45.455 9.73 0.00 0.00 2.57
2764 4755 1.864711 GCCTCGTGCGCTAAATATCAA 59.135 47.619 9.73 0.00 0.00 2.57
2765 4756 1.202475 TGCCTCGTGCGCTAAATATCA 60.202 47.619 9.73 0.00 45.60 2.15
2766 4757 1.497991 TGCCTCGTGCGCTAAATATC 58.502 50.000 9.73 0.00 45.60 1.63
2767 4758 2.169832 ATGCCTCGTGCGCTAAATAT 57.830 45.000 9.73 0.00 45.60 1.28
2768 4759 1.948104 AATGCCTCGTGCGCTAAATA 58.052 45.000 9.73 0.00 45.60 1.40
2769 4760 1.094785 AAATGCCTCGTGCGCTAAAT 58.905 45.000 9.73 0.00 45.60 1.40
2770 4761 0.878416 AAAATGCCTCGTGCGCTAAA 59.122 45.000 9.73 0.00 45.60 1.85
2771 4762 0.878416 AAAAATGCCTCGTGCGCTAA 59.122 45.000 9.73 0.00 45.60 3.09
2772 4763 0.167908 CAAAAATGCCTCGTGCGCTA 59.832 50.000 9.73 0.00 45.60 4.26
2773 4764 1.081242 CAAAAATGCCTCGTGCGCT 60.081 52.632 9.73 0.00 45.60 5.92
2774 4765 0.662970 TTCAAAAATGCCTCGTGCGC 60.663 50.000 0.00 0.00 45.60 6.09
2775 4766 1.330306 CTTCAAAAATGCCTCGTGCG 58.670 50.000 0.00 0.00 45.60 5.34
2776 4767 1.063031 GCTTCAAAAATGCCTCGTGC 58.937 50.000 0.00 0.00 41.77 5.34
2777 4768 1.330306 CGCTTCAAAAATGCCTCGTG 58.670 50.000 0.00 0.00 0.00 4.35
2778 4769 0.951558 ACGCTTCAAAAATGCCTCGT 59.048 45.000 0.00 0.00 0.00 4.18
2779 4770 1.197721 AGACGCTTCAAAAATGCCTCG 59.802 47.619 0.00 0.00 0.00 4.63
2780 4771 2.030805 ACAGACGCTTCAAAAATGCCTC 60.031 45.455 0.00 0.00 0.00 4.70
2781 4772 1.956477 ACAGACGCTTCAAAAATGCCT 59.044 42.857 0.00 0.00 0.00 4.75
2782 4773 2.422276 ACAGACGCTTCAAAAATGCC 57.578 45.000 0.00 0.00 0.00 4.40
2783 4774 2.472488 CCAACAGACGCTTCAAAAATGC 59.528 45.455 0.00 0.00 0.00 3.56
2784 4775 3.963665 TCCAACAGACGCTTCAAAAATG 58.036 40.909 0.00 0.00 0.00 2.32
2785 4776 3.882888 TCTCCAACAGACGCTTCAAAAAT 59.117 39.130 0.00 0.00 0.00 1.82
2786 4777 3.275143 TCTCCAACAGACGCTTCAAAAA 58.725 40.909 0.00 0.00 0.00 1.94
2787 4778 2.912771 TCTCCAACAGACGCTTCAAAA 58.087 42.857 0.00 0.00 0.00 2.44
2788 4779 2.613026 TCTCCAACAGACGCTTCAAA 57.387 45.000 0.00 0.00 0.00 2.69
2789 4780 2.416747 CATCTCCAACAGACGCTTCAA 58.583 47.619 0.00 0.00 32.26 2.69
2790 4781 1.941209 GCATCTCCAACAGACGCTTCA 60.941 52.381 0.00 0.00 37.36 3.02
2791 4782 0.723981 GCATCTCCAACAGACGCTTC 59.276 55.000 0.00 0.00 37.36 3.86
2792 4783 2.846371 GCATCTCCAACAGACGCTT 58.154 52.632 0.00 0.00 37.36 4.68
2793 4784 1.978473 AGCATCTCCAACAGACGCT 59.022 52.632 0.00 0.00 46.07 5.07
2794 4785 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
2806 4797 5.318630 ACTACCTACCTAGCTAAGAGCATC 58.681 45.833 0.64 0.00 45.56 3.91
2807 4798 5.327737 ACTACCTACCTAGCTAAGAGCAT 57.672 43.478 0.64 0.00 45.56 3.79
2808 4799 4.792513 ACTACCTACCTAGCTAAGAGCA 57.207 45.455 0.64 0.00 45.56 4.26
2809 4800 5.012975 TCCTACTACCTACCTAGCTAAGAGC 59.987 48.000 0.00 0.00 42.84 4.09
2810 4801 6.270695 ACTCCTACTACCTACCTAGCTAAGAG 59.729 46.154 0.00 0.00 0.00 2.85
2811 4802 6.149616 ACTCCTACTACCTACCTAGCTAAGA 58.850 44.000 0.00 0.00 0.00 2.10
2812 4803 6.438186 ACTCCTACTACCTACCTAGCTAAG 57.562 45.833 0.00 0.00 0.00 2.18
2813 4804 7.937700 TTACTCCTACTACCTACCTAGCTAA 57.062 40.000 0.00 0.00 0.00 3.09
2814 4805 7.348274 TGTTTACTCCTACTACCTACCTAGCTA 59.652 40.741 0.00 0.00 0.00 3.32
2815 4806 6.159398 TGTTTACTCCTACTACCTACCTAGCT 59.841 42.308 0.00 0.00 0.00 3.32
2816 4807 6.360618 TGTTTACTCCTACTACCTACCTAGC 58.639 44.000 0.00 0.00 0.00 3.42
2817 4808 8.052141 ACTTGTTTACTCCTACTACCTACCTAG 58.948 40.741 0.00 0.00 0.00 3.02
2818 4809 7.933223 ACTTGTTTACTCCTACTACCTACCTA 58.067 38.462 0.00 0.00 0.00 3.08
2819 4810 6.798766 ACTTGTTTACTCCTACTACCTACCT 58.201 40.000 0.00 0.00 0.00 3.08
2820 4811 7.831690 ACTACTTGTTTACTCCTACTACCTACC 59.168 40.741 0.00 0.00 0.00 3.18
2821 4812 8.800370 ACTACTTGTTTACTCCTACTACCTAC 57.200 38.462 0.00 0.00 0.00 3.18
2823 4814 9.813826 TTTACTACTTGTTTACTCCTACTACCT 57.186 33.333 0.00 0.00 0.00 3.08
2848 4839 9.804977 CTTGGGATCCATCTCTTAATATTCTTT 57.195 33.333 15.23 0.00 31.53 2.52
2849 4840 9.175577 TCTTGGGATCCATCTCTTAATATTCTT 57.824 33.333 15.23 0.00 31.53 2.52
2850 4841 8.748179 TCTTGGGATCCATCTCTTAATATTCT 57.252 34.615 15.23 0.00 31.53 2.40
2851 4842 8.046107 CCTCTTGGGATCCATCTCTTAATATTC 58.954 40.741 15.23 0.00 37.23 1.75
2852 4843 7.741288 TCCTCTTGGGATCCATCTCTTAATATT 59.259 37.037 15.23 0.00 39.58 1.28
2853 4844 7.259391 TCCTCTTGGGATCCATCTCTTAATAT 58.741 38.462 15.23 0.00 39.58 1.28
2854 4845 6.634041 TCCTCTTGGGATCCATCTCTTAATA 58.366 40.000 15.23 0.00 39.58 0.98
2855 4846 5.480710 TCCTCTTGGGATCCATCTCTTAAT 58.519 41.667 15.23 0.00 39.58 1.40
2856 4847 4.895836 TCCTCTTGGGATCCATCTCTTAA 58.104 43.478 15.23 0.00 39.58 1.85
2857 4848 4.559576 TCCTCTTGGGATCCATCTCTTA 57.440 45.455 15.23 0.00 39.58 2.10
2858 4849 3.428063 TCCTCTTGGGATCCATCTCTT 57.572 47.619 15.23 0.00 39.58 2.85
2868 4859 6.668292 AGGTTCTTCCGTATCCTCTTGGGA 62.668 50.000 0.00 0.00 44.44 4.37
2869 4860 2.158943 GGTTCTTCCGTATCCTCTTGGG 60.159 54.545 0.00 0.00 0.00 4.12
2870 4861 2.766828 AGGTTCTTCCGTATCCTCTTGG 59.233 50.000 0.00 0.00 41.99 3.61
2871 4862 3.786635 CAGGTTCTTCCGTATCCTCTTG 58.213 50.000 0.00 0.00 41.99 3.02
2872 4863 2.168728 GCAGGTTCTTCCGTATCCTCTT 59.831 50.000 0.00 0.00 41.99 2.85
2873 4864 1.757699 GCAGGTTCTTCCGTATCCTCT 59.242 52.381 0.00 0.00 41.99 3.69
2874 4865 1.480954 TGCAGGTTCTTCCGTATCCTC 59.519 52.381 0.00 0.00 41.99 3.71
2875 4866 1.207329 GTGCAGGTTCTTCCGTATCCT 59.793 52.381 0.00 0.00 41.99 3.24
2876 4867 1.066430 TGTGCAGGTTCTTCCGTATCC 60.066 52.381 0.00 0.00 41.99 2.59
2877 4868 2.380084 TGTGCAGGTTCTTCCGTATC 57.620 50.000 0.00 0.00 41.99 2.24
2878 4869 2.632377 CATGTGCAGGTTCTTCCGTAT 58.368 47.619 0.00 0.00 41.99 3.06
2879 4870 1.943968 GCATGTGCAGGTTCTTCCGTA 60.944 52.381 0.00 0.00 41.99 4.02
2880 4871 1.237285 GCATGTGCAGGTTCTTCCGT 61.237 55.000 0.00 0.00 41.99 4.69
2881 4872 1.503542 GCATGTGCAGGTTCTTCCG 59.496 57.895 0.00 0.00 41.99 4.30
2898 4889 0.588252 GGTCATGGACGCATACATGC 59.412 55.000 0.00 4.04 45.72 4.06
2900 4891 1.806247 CGTGGTCATGGACGCATACAT 60.806 52.381 0.00 0.00 32.65 2.29
2901 4892 0.459411 CGTGGTCATGGACGCATACA 60.459 55.000 0.00 0.00 32.65 2.29
2902 4893 0.459585 ACGTGGTCATGGACGCATAC 60.460 55.000 11.26 0.00 39.22 2.39
2903 4894 0.459411 CACGTGGTCATGGACGCATA 60.459 55.000 7.95 0.00 39.22 3.14
2904 4895 1.741401 CACGTGGTCATGGACGCAT 60.741 57.895 7.95 0.00 39.22 4.73
2905 4896 2.356913 CACGTGGTCATGGACGCA 60.357 61.111 7.95 0.00 39.22 5.24
2906 4897 2.048597 TCACGTGGTCATGGACGC 60.049 61.111 17.00 2.73 39.22 5.19
2907 4898 0.598942 TTGTCACGTGGTCATGGACG 60.599 55.000 17.00 10.16 41.41 4.79
2908 4899 1.148310 CTTGTCACGTGGTCATGGAC 58.852 55.000 17.00 4.97 0.00 4.02
2909 4900 0.602638 GCTTGTCACGTGGTCATGGA 60.603 55.000 17.00 0.64 0.00 3.41
2910 4901 1.868997 GCTTGTCACGTGGTCATGG 59.131 57.895 17.00 11.69 0.00 3.66
2911 4902 1.221466 ACGCTTGTCACGTGGTCATG 61.221 55.000 17.00 16.76 43.23 3.07
2912 4903 1.069090 ACGCTTGTCACGTGGTCAT 59.931 52.632 17.00 0.00 43.23 3.06
2913 4904 2.497293 ACGCTTGTCACGTGGTCA 59.503 55.556 17.00 12.62 43.23 4.02
2918 4909 1.595794 CTTTTACCACGCTTGTCACGT 59.404 47.619 0.00 0.00 46.42 4.49
2919 4910 1.659211 GCTTTTACCACGCTTGTCACG 60.659 52.381 0.00 0.00 0.00 4.35
2920 4911 1.332375 TGCTTTTACCACGCTTGTCAC 59.668 47.619 0.00 0.00 0.00 3.67
2921 4912 1.669604 TGCTTTTACCACGCTTGTCA 58.330 45.000 0.00 0.00 0.00 3.58
2922 4913 2.766970 TTGCTTTTACCACGCTTGTC 57.233 45.000 0.00 0.00 0.00 3.18
2923 4914 2.884639 AGATTGCTTTTACCACGCTTGT 59.115 40.909 0.00 0.00 0.00 3.16
2924 4915 3.058293 TGAGATTGCTTTTACCACGCTTG 60.058 43.478 0.00 0.00 0.00 4.01
2925 4916 3.146066 TGAGATTGCTTTTACCACGCTT 58.854 40.909 0.00 0.00 0.00 4.68
2926 4917 2.778299 TGAGATTGCTTTTACCACGCT 58.222 42.857 0.00 0.00 0.00 5.07
2927 4918 3.552604 TTGAGATTGCTTTTACCACGC 57.447 42.857 0.00 0.00 0.00 5.34
2928 4919 6.088085 GTCAATTTGAGATTGCTTTTACCACG 59.912 38.462 0.00 0.00 0.00 4.94
2929 4920 6.922957 TGTCAATTTGAGATTGCTTTTACCAC 59.077 34.615 0.00 0.00 0.00 4.16
2930 4921 7.048629 TGTCAATTTGAGATTGCTTTTACCA 57.951 32.000 0.00 0.00 0.00 3.25
2931 4922 7.945033 TTGTCAATTTGAGATTGCTTTTACC 57.055 32.000 0.00 0.00 0.00 2.85
2934 4925 8.895737 ACATTTTGTCAATTTGAGATTGCTTTT 58.104 25.926 0.00 0.00 0.00 2.27
2935 4926 8.441312 ACATTTTGTCAATTTGAGATTGCTTT 57.559 26.923 0.00 0.00 0.00 3.51
2936 4927 9.715121 ATACATTTTGTCAATTTGAGATTGCTT 57.285 25.926 0.00 0.00 0.00 3.91
2937 4928 9.146984 CATACATTTTGTCAATTTGAGATTGCT 57.853 29.630 0.00 0.00 0.00 3.91
2938 4929 7.901377 GCATACATTTTGTCAATTTGAGATTGC 59.099 33.333 0.00 0.00 0.00 3.56
2939 4930 8.105742 CGCATACATTTTGTCAATTTGAGATTG 58.894 33.333 0.00 0.63 0.00 2.67
2940 4931 7.814107 ACGCATACATTTTGTCAATTTGAGATT 59.186 29.630 0.00 0.00 0.00 2.40
2941 4932 7.315142 ACGCATACATTTTGTCAATTTGAGAT 58.685 30.769 0.00 0.00 0.00 2.75
2942 4933 6.676950 ACGCATACATTTTGTCAATTTGAGA 58.323 32.000 0.00 0.00 0.00 3.27
2943 4934 6.033831 GGACGCATACATTTTGTCAATTTGAG 59.966 38.462 0.00 0.00 0.00 3.02
2944 4935 5.861251 GGACGCATACATTTTGTCAATTTGA 59.139 36.000 0.00 0.00 0.00 2.69
2945 4936 5.632764 TGGACGCATACATTTTGTCAATTTG 59.367 36.000 0.00 0.00 0.00 2.32
2946 4937 5.633182 GTGGACGCATACATTTTGTCAATTT 59.367 36.000 0.00 0.00 0.00 1.82
2947 4938 5.160641 GTGGACGCATACATTTTGTCAATT 58.839 37.500 0.00 0.00 0.00 2.32
2948 4939 4.671508 CGTGGACGCATACATTTTGTCAAT 60.672 41.667 0.00 0.00 0.00 2.57
2949 4940 3.364465 CGTGGACGCATACATTTTGTCAA 60.364 43.478 0.00 0.00 0.00 3.18
2950 4941 2.158645 CGTGGACGCATACATTTTGTCA 59.841 45.455 0.00 0.00 0.00 3.58
2951 4942 2.475519 CCGTGGACGCATACATTTTGTC 60.476 50.000 0.00 0.00 38.18 3.18
2952 4943 1.466950 CCGTGGACGCATACATTTTGT 59.533 47.619 0.00 0.00 38.18 2.83
2953 4944 1.793714 GCCGTGGACGCATACATTTTG 60.794 52.381 0.00 0.00 38.18 2.44
2954 4945 0.450184 GCCGTGGACGCATACATTTT 59.550 50.000 0.00 0.00 38.18 1.82
2955 4946 1.373590 GGCCGTGGACGCATACATTT 61.374 55.000 0.00 0.00 38.18 2.32
2956 4947 1.817941 GGCCGTGGACGCATACATT 60.818 57.895 0.00 0.00 38.18 2.71
2957 4948 2.203015 GGCCGTGGACGCATACAT 60.203 61.111 0.00 0.00 38.18 2.29
2958 4949 3.387091 AGGCCGTGGACGCATACA 61.387 61.111 0.00 0.00 38.18 2.29
2959 4950 2.890474 CAGGCCGTGGACGCATAC 60.890 66.667 0.00 0.00 38.18 2.39
2960 4951 3.365291 GACAGGCCGTGGACGCATA 62.365 63.158 4.94 0.00 38.18 3.14
2961 4952 4.760047 GACAGGCCGTGGACGCAT 62.760 66.667 4.94 0.00 38.18 4.73
2963 4954 3.077519 ATAGACAGGCCGTGGACGC 62.078 63.158 4.94 0.00 38.18 5.19
2964 4955 1.226974 CATAGACAGGCCGTGGACG 60.227 63.158 4.94 0.00 39.44 4.79
2965 4956 1.144057 CCATAGACAGGCCGTGGAC 59.856 63.158 4.94 0.00 31.59 4.02
2966 4957 2.731571 GCCATAGACAGGCCGTGGA 61.732 63.158 4.94 0.00 46.50 4.02
2967 4958 2.203070 GCCATAGACAGGCCGTGG 60.203 66.667 4.94 5.62 46.50 4.94
2973 4964 3.079578 CAATGCATAGGCCATAGACAGG 58.920 50.000 5.01 0.00 40.13 4.00
2974 4965 2.486982 GCAATGCATAGGCCATAGACAG 59.513 50.000 5.01 0.00 40.13 3.51
2975 4966 2.158638 TGCAATGCATAGGCCATAGACA 60.159 45.455 17.63 0.00 40.13 3.41
2976 4967 2.507484 TGCAATGCATAGGCCATAGAC 58.493 47.619 17.63 0.00 40.13 2.59
2977 4968 2.955342 TGCAATGCATAGGCCATAGA 57.045 45.000 17.63 0.00 40.13 1.98
3021 5012 0.927537 TAATACACACGAGCGCATGC 59.072 50.000 11.47 7.91 43.24 4.06
3022 5013 1.257936 GGTAATACACACGAGCGCATG 59.742 52.381 11.47 7.56 0.00 4.06
3023 5014 1.136305 AGGTAATACACACGAGCGCAT 59.864 47.619 11.47 0.00 0.00 4.73
3024 5015 0.528924 AGGTAATACACACGAGCGCA 59.471 50.000 11.47 0.00 0.00 6.09
3025 5016 1.197910 GAGGTAATACACACGAGCGC 58.802 55.000 0.00 0.00 0.00 5.92
3026 5017 2.159421 ACAGAGGTAATACACACGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
3027 5018 3.128938 AGACAGAGGTAATACACACGAGC 59.871 47.826 0.00 0.00 0.00 5.03
3028 5019 4.966965 AGACAGAGGTAATACACACGAG 57.033 45.455 0.00 0.00 0.00 4.18
3029 5020 5.737860 TCTAGACAGAGGTAATACACACGA 58.262 41.667 0.00 0.00 0.00 4.35
3030 5021 6.050454 CTCTAGACAGAGGTAATACACACG 57.950 45.833 0.00 0.00 44.05 4.49
3078 5069 9.716507 GATACAAATGTATTTAAACACGCTCAT 57.283 29.630 7.45 0.00 40.99 2.90
3079 5070 8.941977 AGATACAAATGTATTTAAACACGCTCA 58.058 29.630 7.45 0.00 40.99 4.26
3113 5104 9.856162 AACAAACACCCTCTTACTTATTTTAGA 57.144 29.630 0.00 0.00 0.00 2.10
3116 5107 8.418662 GGAAACAAACACCCTCTTACTTATTTT 58.581 33.333 0.00 0.00 0.00 1.82
3117 5108 7.562088 TGGAAACAAACACCCTCTTACTTATTT 59.438 33.333 0.00 0.00 37.44 1.40
3118 5109 7.064229 TGGAAACAAACACCCTCTTACTTATT 58.936 34.615 0.00 0.00 37.44 1.40
3119 5110 6.607019 TGGAAACAAACACCCTCTTACTTAT 58.393 36.000 0.00 0.00 37.44 1.73
3120 5111 6.003859 TGGAAACAAACACCCTCTTACTTA 57.996 37.500 0.00 0.00 37.44 2.24
3121 5112 4.862371 TGGAAACAAACACCCTCTTACTT 58.138 39.130 0.00 0.00 37.44 2.24
3122 5113 4.461198 CTGGAAACAAACACCCTCTTACT 58.539 43.478 0.00 0.00 42.06 2.24
3123 5114 3.568430 CCTGGAAACAAACACCCTCTTAC 59.432 47.826 0.00 0.00 42.06 2.34
3124 5115 3.435890 CCCTGGAAACAAACACCCTCTTA 60.436 47.826 0.00 0.00 42.06 2.10
3125 5116 2.666317 CCTGGAAACAAACACCCTCTT 58.334 47.619 0.00 0.00 42.06 2.85
3126 5117 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
3127 5118 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
3128 5119 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
3129 5120 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
3130 5121 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
3131 5122 4.022329 CCATAAGTCCCTGGAAACAAACAC 60.022 45.833 0.00 0.00 42.06 3.32
3132 5123 4.148838 CCATAAGTCCCTGGAAACAAACA 58.851 43.478 0.00 0.00 42.06 2.83
3133 5124 3.509967 CCCATAAGTCCCTGGAAACAAAC 59.490 47.826 0.00 0.00 42.06 2.93
3134 5125 3.141272 ACCCATAAGTCCCTGGAAACAAA 59.859 43.478 0.00 0.00 42.06 2.83
3135 5126 2.719705 ACCCATAAGTCCCTGGAAACAA 59.280 45.455 0.00 0.00 42.06 2.83
3136 5127 2.307686 GACCCATAAGTCCCTGGAAACA 59.692 50.000 0.00 0.00 34.24 2.83
3137 5128 2.576648 AGACCCATAAGTCCCTGGAAAC 59.423 50.000 0.00 0.00 37.49 2.78
3138 5129 2.929301 AGACCCATAAGTCCCTGGAAA 58.071 47.619 0.00 0.00 37.49 3.13
3139 5130 2.661176 AGACCCATAAGTCCCTGGAA 57.339 50.000 0.00 0.00 37.49 3.53
3140 5131 2.090719 CCTAGACCCATAAGTCCCTGGA 60.091 54.545 0.00 0.00 37.49 3.86
3141 5132 2.330216 CCTAGACCCATAAGTCCCTGG 58.670 57.143 0.00 0.00 37.49 4.45
3142 5133 2.090719 TCCCTAGACCCATAAGTCCCTG 60.091 54.545 0.00 0.00 37.49 4.45
3143 5134 2.090663 GTCCCTAGACCCATAAGTCCCT 60.091 54.545 0.00 0.00 37.49 4.20
3144 5135 2.090663 AGTCCCTAGACCCATAAGTCCC 60.091 54.545 0.00 0.00 44.72 4.46
3145 5136 3.331718 AGTCCCTAGACCCATAAGTCC 57.668 52.381 0.00 0.00 44.72 3.85
3146 5137 6.803366 TTTAAGTCCCTAGACCCATAAGTC 57.197 41.667 0.00 0.00 44.72 3.01
3147 5138 7.578458 TTTTTAAGTCCCTAGACCCATAAGT 57.422 36.000 0.00 0.00 44.72 2.24
3168 5159 4.140782 AGGTGGGACTTATTGGGACTTTTT 60.141 41.667 0.00 0.00 0.00 1.94
3169 5160 3.401342 AGGTGGGACTTATTGGGACTTTT 59.599 43.478 0.00 0.00 0.00 2.27
3170 5161 2.993863 AGGTGGGACTTATTGGGACTTT 59.006 45.455 0.00 0.00 0.00 2.66
3171 5162 2.644151 AGGTGGGACTTATTGGGACTT 58.356 47.619 0.00 0.00 0.00 3.01
3172 5163 2.361085 AGGTGGGACTTATTGGGACT 57.639 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.