Multiple sequence alignment - TraesCS3B01G339400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G339400 chr3B 100.000 3214 0 0 1 3214 545383103 545386316 0.000000e+00 5936.0
1 TraesCS3B01G339400 chr3B 85.350 901 108 14 1457 2347 545433102 545433988 0.000000e+00 911.0
2 TraesCS3B01G339400 chr3B 85.714 882 102 13 1457 2328 545668295 545669162 0.000000e+00 909.0
3 TraesCS3B01G339400 chr3B 84.872 899 109 15 1457 2345 545494707 545495588 0.000000e+00 881.0
4 TraesCS3B01G339400 chr3B 98.024 506 9 1 2710 3214 545391290 545391795 0.000000e+00 878.0
5 TraesCS3B01G339400 chr3B 84.590 902 115 12 1457 2348 545562821 545563708 0.000000e+00 874.0
6 TraesCS3B01G339400 chr3B 97.826 506 10 1 2710 3214 436519872 436519367 0.000000e+00 872.0
7 TraesCS3B01G339400 chr3B 97.456 511 12 1 2705 3214 781756345 781755835 0.000000e+00 870.0
8 TraesCS3B01G339400 chr3B 94.137 307 16 1 141 445 525614560 525614254 1.750000e-127 466.0
9 TraesCS3B01G339400 chr3B 78.493 544 59 29 831 1336 545667695 545668218 1.450000e-78 303.0
10 TraesCS3B01G339400 chr3B 78.245 547 62 29 828 1336 545432498 545433025 6.740000e-77 298.0
11 TraesCS3B01G339400 chr3D 90.703 925 66 4 1421 2345 418876060 418876964 0.000000e+00 1214.0
12 TraesCS3B01G339400 chr3D 90.703 925 66 4 1421 2345 418891359 418892263 0.000000e+00 1214.0
13 TraesCS3B01G339400 chr3D 83.991 912 116 13 1449 2347 419515930 419516824 0.000000e+00 848.0
14 TraesCS3B01G339400 chr3D 87.044 795 48 23 583 1339 418875263 418876040 0.000000e+00 846.0
15 TraesCS3B01G339400 chr3D 87.044 795 48 23 583 1339 418890562 418891339 0.000000e+00 846.0
16 TraesCS3B01G339400 chr3D 86.212 747 85 7 1466 2200 419464395 419465135 0.000000e+00 793.0
17 TraesCS3B01G339400 chr3D 90.498 442 26 2 1887 2328 419123089 419123514 1.290000e-158 569.0
18 TraesCS3B01G339400 chr3D 92.883 281 19 1 2402 2681 418892250 418892530 1.070000e-109 407.0
19 TraesCS3B01G339400 chr3D 92.281 285 19 3 2398 2681 418876951 418877233 4.990000e-108 401.0
20 TraesCS3B01G339400 chr3D 89.869 306 17 6 2404 2709 419123516 419123807 6.510000e-102 381.0
21 TraesCS3B01G339400 chr3D 78.403 551 57 26 828 1337 419386438 419386967 5.210000e-78 302.0
22 TraesCS3B01G339400 chr3D 90.291 103 7 3 449 551 418875164 418875263 7.230000e-27 132.0
23 TraesCS3B01G339400 chr3D 90.291 103 7 3 449 551 418890463 418890562 7.230000e-27 132.0
24 TraesCS3B01G339400 chr3D 82.550 149 17 5 2513 2657 419517025 419517168 4.350000e-24 122.0
25 TraesCS3B01G339400 chr3A 88.017 918 53 14 1795 2709 532112774 532111911 0.000000e+00 1033.0
26 TraesCS3B01G339400 chr3A 84.118 913 115 16 1449 2348 531702201 531701306 0.000000e+00 856.0
27 TraesCS3B01G339400 chr3A 83.736 910 119 12 1449 2345 531897034 531896141 0.000000e+00 833.0
28 TraesCS3B01G339400 chr3A 89.244 595 46 3 1795 2389 532133969 532133393 0.000000e+00 728.0
29 TraesCS3B01G339400 chr3A 86.018 565 40 18 452 989 532114308 532113756 1.290000e-158 569.0
30 TraesCS3B01G339400 chr3A 86.018 565 40 18 452 989 532135996 532135444 1.290000e-158 569.0
31 TraesCS3B01G339400 chr3A 86.018 565 40 18 452 989 532155107 532154555 1.290000e-158 569.0
32 TraesCS3B01G339400 chr3A 84.919 431 58 3 22 446 63433697 63434126 2.290000e-116 429.0
33 TraesCS3B01G339400 chr3A 82.004 489 56 20 876 1345 531702708 531702233 1.400000e-103 387.0
34 TraesCS3B01G339400 chr3A 78.716 545 59 27 831 1339 531945012 531944489 8.660000e-81 311.0
35 TraesCS3B01G339400 chr3A 93.500 200 8 2 2511 2709 532133135 532132940 3.140000e-75 292.0
36 TraesCS3B01G339400 chr3A 80.864 162 20 6 2513 2670 531701136 531700982 2.030000e-22 117.0
37 TraesCS3B01G339400 chrUn 86.839 927 62 23 452 1336 383819446 383818538 0.000000e+00 981.0
38 TraesCS3B01G339400 chrUn 86.624 927 64 24 452 1336 383809090 383808182 0.000000e+00 970.0
39 TraesCS3B01G339400 chr5D 86.041 917 93 16 1421 2327 442011574 442010683 0.000000e+00 952.0
40 TraesCS3B01G339400 chr5D 93.060 317 21 1 128 444 377311651 377311336 2.260000e-126 462.0
41 TraesCS3B01G339400 chr5D 86.486 407 48 6 40 443 114474467 114474869 1.060000e-119 440.0
42 TraesCS3B01G339400 chr7B 98.617 506 6 1 2710 3214 674767623 674768128 0.000000e+00 894.0
43 TraesCS3B01G339400 chr7B 87.200 125 16 0 984 1108 641141352 641141476 3.340000e-30 143.0
44 TraesCS3B01G339400 chr6B 98.221 506 8 1 2710 3214 550796852 550797357 0.000000e+00 883.0
45 TraesCS3B01G339400 chr6B 97.826 506 10 1 2710 3214 620879785 620879280 0.000000e+00 872.0
46 TraesCS3B01G339400 chr6B 86.916 428 53 2 21 446 36218107 36217681 8.070000e-131 477.0
47 TraesCS3B01G339400 chr5B 84.922 902 105 12 1421 2313 538038767 538037888 0.000000e+00 883.0
48 TraesCS3B01G339400 chr5B 76.582 474 59 24 895 1333 538039250 538038794 2.510000e-51 213.0
49 TraesCS3B01G339400 chr2B 98.221 506 8 1 2710 3214 755969951 755969446 0.000000e+00 883.0
50 TraesCS3B01G339400 chr2B 98.024 506 9 1 2710 3214 116426636 116426131 0.000000e+00 878.0
51 TraesCS3B01G339400 chr1B 97.826 506 10 1 2710 3214 46661023 46661528 0.000000e+00 872.0
52 TraesCS3B01G339400 chr1B 94.397 232 13 0 217 448 60019558 60019327 1.100000e-94 357.0
53 TraesCS3B01G339400 chr4A 85.000 880 105 11 1465 2329 544381463 544382330 0.000000e+00 869.0
54 TraesCS3B01G339400 chr4A 77.029 653 90 31 731 1341 544380675 544381309 1.440000e-83 320.0
55 TraesCS3B01G339400 chr2D 92.377 446 32 2 1 446 32776799 32776356 4.520000e-178 634.0
56 TraesCS3B01G339400 chr1A 92.887 239 16 1 211 448 175180201 175180439 2.370000e-91 346.0
57 TraesCS3B01G339400 chr1A 91.129 124 11 0 1 124 175180061 175180184 5.510000e-38 169.0
58 TraesCS3B01G339400 chr7D 84.013 319 38 8 145 451 620262225 620261908 8.720000e-76 294.0
59 TraesCS3B01G339400 chr2A 84.375 128 15 2 123 245 707795858 707795985 1.570000e-23 121.0
60 TraesCS3B01G339400 chr4B 100.000 28 0 0 1373 1400 605944645 605944618 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G339400 chr3B 545383103 545386316 3213 False 5936.000000 5936 100.000000 1 3214 1 chr3B.!!$F1 3213
1 TraesCS3B01G339400 chr3B 545494707 545495588 881 False 881.000000 881 84.872000 1457 2345 1 chr3B.!!$F3 888
2 TraesCS3B01G339400 chr3B 545391290 545391795 505 False 878.000000 878 98.024000 2710 3214 1 chr3B.!!$F2 504
3 TraesCS3B01G339400 chr3B 545562821 545563708 887 False 874.000000 874 84.590000 1457 2348 1 chr3B.!!$F4 891
4 TraesCS3B01G339400 chr3B 436519367 436519872 505 True 872.000000 872 97.826000 2710 3214 1 chr3B.!!$R1 504
5 TraesCS3B01G339400 chr3B 781755835 781756345 510 True 870.000000 870 97.456000 2705 3214 1 chr3B.!!$R3 509
6 TraesCS3B01G339400 chr3B 545667695 545669162 1467 False 606.000000 909 82.103500 831 2328 2 chr3B.!!$F6 1497
7 TraesCS3B01G339400 chr3B 545432498 545433988 1490 False 604.500000 911 81.797500 828 2347 2 chr3B.!!$F5 1519
8 TraesCS3B01G339400 chr3D 419464395 419465135 740 False 793.000000 793 86.212000 1466 2200 1 chr3D.!!$F2 734
9 TraesCS3B01G339400 chr3D 418890463 418892530 2067 False 649.750000 1214 90.230250 449 2681 4 chr3D.!!$F4 2232
10 TraesCS3B01G339400 chr3D 418875164 418877233 2069 False 648.250000 1214 90.079750 449 2681 4 chr3D.!!$F3 2232
11 TraesCS3B01G339400 chr3D 419515930 419517168 1238 False 485.000000 848 83.270500 1449 2657 2 chr3D.!!$F6 1208
12 TraesCS3B01G339400 chr3D 419123089 419123807 718 False 475.000000 569 90.183500 1887 2709 2 chr3D.!!$F5 822
13 TraesCS3B01G339400 chr3D 419386438 419386967 529 False 302.000000 302 78.403000 828 1337 1 chr3D.!!$F1 509
14 TraesCS3B01G339400 chr3A 531896141 531897034 893 True 833.000000 833 83.736000 1449 2345 1 chr3A.!!$R1 896
15 TraesCS3B01G339400 chr3A 532111911 532114308 2397 True 801.000000 1033 87.017500 452 2709 2 chr3A.!!$R5 2257
16 TraesCS3B01G339400 chr3A 532154555 532155107 552 True 569.000000 569 86.018000 452 989 1 chr3A.!!$R3 537
17 TraesCS3B01G339400 chr3A 532132940 532135996 3056 True 529.666667 728 89.587333 452 2709 3 chr3A.!!$R6 2257
18 TraesCS3B01G339400 chr3A 531700982 531702708 1726 True 453.333333 856 82.328667 876 2670 3 chr3A.!!$R4 1794
19 TraesCS3B01G339400 chr3A 531944489 531945012 523 True 311.000000 311 78.716000 831 1339 1 chr3A.!!$R2 508
20 TraesCS3B01G339400 chrUn 383818538 383819446 908 True 981.000000 981 86.839000 452 1336 1 chrUn.!!$R2 884
21 TraesCS3B01G339400 chrUn 383808182 383809090 908 True 970.000000 970 86.624000 452 1336 1 chrUn.!!$R1 884
22 TraesCS3B01G339400 chr5D 442010683 442011574 891 True 952.000000 952 86.041000 1421 2327 1 chr5D.!!$R2 906
23 TraesCS3B01G339400 chr7B 674767623 674768128 505 False 894.000000 894 98.617000 2710 3214 1 chr7B.!!$F2 504
24 TraesCS3B01G339400 chr6B 550796852 550797357 505 False 883.000000 883 98.221000 2710 3214 1 chr6B.!!$F1 504
25 TraesCS3B01G339400 chr6B 620879280 620879785 505 True 872.000000 872 97.826000 2710 3214 1 chr6B.!!$R2 504
26 TraesCS3B01G339400 chr5B 538037888 538039250 1362 True 548.000000 883 80.752000 895 2313 2 chr5B.!!$R1 1418
27 TraesCS3B01G339400 chr2B 755969446 755969951 505 True 883.000000 883 98.221000 2710 3214 1 chr2B.!!$R2 504
28 TraesCS3B01G339400 chr2B 116426131 116426636 505 True 878.000000 878 98.024000 2710 3214 1 chr2B.!!$R1 504
29 TraesCS3B01G339400 chr1B 46661023 46661528 505 False 872.000000 872 97.826000 2710 3214 1 chr1B.!!$F1 504
30 TraesCS3B01G339400 chr4A 544380675 544382330 1655 False 594.500000 869 81.014500 731 2329 2 chr4A.!!$F1 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.103208 GCGCCTAGTCAGCACATACT 59.897 55.0 0.00 0.0 0.00 2.12 F
947 998 0.106918 AACCAGCCGGAGAAAACACA 60.107 50.0 5.05 0.0 35.59 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 2102 0.389757 GATAAGCCACTCCCTCCGTC 59.610 60.0 0.0 0.0 0.0 4.79 R
2329 3220 0.177836 TCACACACACACACAGGGAG 59.822 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.733458 ACAATAGATAAAGTTTTTACCCGTTCC 58.267 33.333 0.00 0.00 0.00 3.62
35 36 5.868043 AGATAAAGTTTTTACCCGTTCCG 57.132 39.130 0.00 0.00 0.00 4.30
51 52 3.780804 TTCCGGATGAAGGAAACTGAA 57.219 42.857 4.15 0.00 44.04 3.02
52 53 3.053831 TCCGGATGAAGGAAACTGAAC 57.946 47.619 0.00 0.00 42.68 3.18
53 54 1.732259 CCGGATGAAGGAAACTGAACG 59.268 52.381 0.00 0.00 42.68 3.95
54 55 1.732259 CGGATGAAGGAAACTGAACGG 59.268 52.381 0.00 0.00 42.68 4.44
55 56 2.084546 GGATGAAGGAAACTGAACGGG 58.915 52.381 0.00 0.00 42.68 5.28
56 57 2.552373 GGATGAAGGAAACTGAACGGGT 60.552 50.000 0.00 0.00 42.68 5.28
57 58 1.961793 TGAAGGAAACTGAACGGGTG 58.038 50.000 0.00 0.00 42.68 4.61
58 59 0.591659 GAAGGAAACTGAACGGGTGC 59.408 55.000 0.00 0.00 42.68 5.01
59 60 0.106918 AAGGAAACTGAACGGGTGCA 60.107 50.000 0.00 0.00 42.68 4.57
60 61 0.535102 AGGAAACTGAACGGGTGCAG 60.535 55.000 5.23 5.23 41.13 4.41
61 62 0.818040 GGAAACTGAACGGGTGCAGT 60.818 55.000 6.63 6.63 46.59 4.40
62 63 0.307760 GAAACTGAACGGGTGCAGTG 59.692 55.000 13.06 0.00 44.06 3.66
63 64 1.101049 AAACTGAACGGGTGCAGTGG 61.101 55.000 13.06 0.00 44.06 4.00
64 65 2.111043 CTGAACGGGTGCAGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
65 66 1.525995 CTGAACGGGTGCAGTGGTT 60.526 57.895 0.00 0.00 0.00 3.67
66 67 1.077357 TGAACGGGTGCAGTGGTTT 60.077 52.632 0.00 0.00 0.00 3.27
67 68 1.358759 GAACGGGTGCAGTGGTTTG 59.641 57.895 0.00 0.00 0.00 2.93
68 69 2.677573 GAACGGGTGCAGTGGTTTGC 62.678 60.000 0.00 0.00 44.33 3.68
69 70 3.977244 CGGGTGCAGTGGTTTGCC 61.977 66.667 0.00 0.00 43.43 4.52
70 71 3.977244 GGGTGCAGTGGTTTGCCG 61.977 66.667 0.00 0.00 43.43 5.69
71 72 4.645921 GGTGCAGTGGTTTGCCGC 62.646 66.667 0.00 0.00 43.43 6.53
72 73 4.645921 GTGCAGTGGTTTGCCGCC 62.646 66.667 0.00 0.00 46.14 6.13
73 74 4.892965 TGCAGTGGTTTGCCGCCT 62.893 61.111 0.00 0.00 46.14 5.52
74 75 4.043200 GCAGTGGTTTGCCGCCTC 62.043 66.667 0.00 0.00 46.14 4.70
75 76 3.726517 CAGTGGTTTGCCGCCTCG 61.727 66.667 0.00 0.00 46.14 4.63
76 77 4.250305 AGTGGTTTGCCGCCTCGT 62.250 61.111 0.00 0.00 46.14 4.18
77 78 3.284449 GTGGTTTGCCGCCTCGTT 61.284 61.111 0.00 0.00 39.31 3.85
78 79 2.517402 TGGTTTGCCGCCTCGTTT 60.517 55.556 0.00 0.00 37.67 3.60
79 80 2.050442 GGTTTGCCGCCTCGTTTG 60.050 61.111 0.00 0.00 0.00 2.93
80 81 2.729491 GTTTGCCGCCTCGTTTGC 60.729 61.111 0.00 0.00 0.00 3.68
89 90 3.645975 CTCGTTTGCGTGGGCGTT 61.646 61.111 0.00 0.00 44.10 4.84
90 91 3.855209 CTCGTTTGCGTGGGCGTTG 62.855 63.158 0.00 0.00 44.10 4.10
91 92 4.244802 CGTTTGCGTGGGCGTTGT 62.245 61.111 0.00 0.00 44.10 3.32
92 93 2.103340 GTTTGCGTGGGCGTTGTT 59.897 55.556 0.00 0.00 44.10 2.83
93 94 2.103143 TTTGCGTGGGCGTTGTTG 59.897 55.556 0.00 0.00 44.10 3.33
94 95 2.701780 TTTGCGTGGGCGTTGTTGT 61.702 52.632 0.00 0.00 44.10 3.32
95 96 2.214181 TTTGCGTGGGCGTTGTTGTT 62.214 50.000 0.00 0.00 44.10 2.83
96 97 2.653766 GCGTGGGCGTTGTTGTTG 60.654 61.111 0.00 0.00 40.81 3.33
97 98 2.025441 CGTGGGCGTTGTTGTTGG 59.975 61.111 0.00 0.00 0.00 3.77
98 99 2.766400 CGTGGGCGTTGTTGTTGGT 61.766 57.895 0.00 0.00 0.00 3.67
99 100 1.513622 GTGGGCGTTGTTGTTGGTT 59.486 52.632 0.00 0.00 0.00 3.67
100 101 0.526739 GTGGGCGTTGTTGTTGGTTC 60.527 55.000 0.00 0.00 0.00 3.62
101 102 1.298788 GGGCGTTGTTGTTGGTTCG 60.299 57.895 0.00 0.00 0.00 3.95
102 103 1.716826 GGGCGTTGTTGTTGGTTCGA 61.717 55.000 0.00 0.00 0.00 3.71
103 104 0.309612 GGCGTTGTTGTTGGTTCGAT 59.690 50.000 0.00 0.00 0.00 3.59
104 105 1.662026 GGCGTTGTTGTTGGTTCGATC 60.662 52.381 0.00 0.00 0.00 3.69
105 106 1.662026 GCGTTGTTGTTGGTTCGATCC 60.662 52.381 5.52 5.52 0.00 3.36
106 107 1.069500 CGTTGTTGTTGGTTCGATCCC 60.069 52.381 10.02 2.41 0.00 3.85
107 108 1.268625 GTTGTTGTTGGTTCGATCCCC 59.731 52.381 10.02 0.00 0.00 4.81
108 109 0.474614 TGTTGTTGGTTCGATCCCCA 59.525 50.000 10.02 2.59 0.00 4.96
109 110 0.879090 GTTGTTGGTTCGATCCCCAC 59.121 55.000 10.02 7.40 0.00 4.61
110 111 0.250989 TTGTTGGTTCGATCCCCACC 60.251 55.000 10.02 3.11 0.00 4.61
111 112 1.377229 GTTGGTTCGATCCCCACCA 59.623 57.895 10.02 5.94 38.89 4.17
112 113 0.676782 GTTGGTTCGATCCCCACCAG 60.677 60.000 10.02 0.00 41.65 4.00
113 114 2.124695 GGTTCGATCCCCACCAGC 60.125 66.667 0.63 0.00 0.00 4.85
114 115 2.124695 GTTCGATCCCCACCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
115 116 2.609299 TTCGATCCCCACCAGCCA 60.609 61.111 0.00 0.00 0.00 4.75
116 117 2.966732 TTCGATCCCCACCAGCCAC 61.967 63.158 0.00 0.00 0.00 5.01
117 118 3.716195 CGATCCCCACCAGCCACA 61.716 66.667 0.00 0.00 0.00 4.17
118 119 3.010144 GATCCCCACCAGCCACAT 58.990 61.111 0.00 0.00 0.00 3.21
119 120 1.152881 GATCCCCACCAGCCACATC 60.153 63.158 0.00 0.00 0.00 3.06
120 121 1.620589 ATCCCCACCAGCCACATCT 60.621 57.895 0.00 0.00 0.00 2.90
121 122 0.327480 ATCCCCACCAGCCACATCTA 60.327 55.000 0.00 0.00 0.00 1.98
122 123 0.982852 TCCCCACCAGCCACATCTAG 60.983 60.000 0.00 0.00 0.00 2.43
123 124 1.153086 CCCACCAGCCACATCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
124 125 1.630126 CCCACCAGCCACATCTAGCT 61.630 60.000 0.00 0.00 40.89 3.32
125 126 0.254178 CCACCAGCCACATCTAGCTT 59.746 55.000 0.00 0.00 37.18 3.74
126 127 1.340405 CCACCAGCCACATCTAGCTTT 60.340 52.381 0.00 0.00 37.18 3.51
127 128 2.440409 CACCAGCCACATCTAGCTTTT 58.560 47.619 0.00 0.00 37.18 2.27
128 129 2.821969 CACCAGCCACATCTAGCTTTTT 59.178 45.455 0.00 0.00 37.18 1.94
129 130 2.821969 ACCAGCCACATCTAGCTTTTTG 59.178 45.455 0.00 0.00 37.18 2.44
130 131 2.821969 CCAGCCACATCTAGCTTTTTGT 59.178 45.455 0.00 0.00 37.18 2.83
131 132 3.256631 CCAGCCACATCTAGCTTTTTGTT 59.743 43.478 0.00 0.00 37.18 2.83
132 133 4.262164 CCAGCCACATCTAGCTTTTTGTTT 60.262 41.667 0.00 0.00 37.18 2.83
133 134 5.291971 CAGCCACATCTAGCTTTTTGTTTT 58.708 37.500 0.00 0.00 37.18 2.43
134 135 5.403466 CAGCCACATCTAGCTTTTTGTTTTC 59.597 40.000 0.00 0.00 37.18 2.29
135 136 5.302823 AGCCACATCTAGCTTTTTGTTTTCT 59.697 36.000 0.00 0.00 35.22 2.52
136 137 5.403466 GCCACATCTAGCTTTTTGTTTTCTG 59.597 40.000 0.00 0.00 0.00 3.02
137 138 6.507023 CCACATCTAGCTTTTTGTTTTCTGT 58.493 36.000 0.00 0.00 0.00 3.41
138 139 7.648142 CCACATCTAGCTTTTTGTTTTCTGTA 58.352 34.615 0.00 0.00 0.00 2.74
139 140 8.299570 CCACATCTAGCTTTTTGTTTTCTGTAT 58.700 33.333 0.00 0.00 0.00 2.29
140 141 9.683069 CACATCTAGCTTTTTGTTTTCTGTATT 57.317 29.630 0.00 0.00 0.00 1.89
141 142 9.683069 ACATCTAGCTTTTTGTTTTCTGTATTG 57.317 29.630 0.00 0.00 0.00 1.90
142 143 9.132521 CATCTAGCTTTTTGTTTTCTGTATTGG 57.867 33.333 0.00 0.00 0.00 3.16
143 144 7.657336 TCTAGCTTTTTGTTTTCTGTATTGGG 58.343 34.615 0.00 0.00 0.00 4.12
144 145 6.233905 AGCTTTTTGTTTTCTGTATTGGGT 57.766 33.333 0.00 0.00 0.00 4.51
145 146 6.048509 AGCTTTTTGTTTTCTGTATTGGGTG 58.951 36.000 0.00 0.00 0.00 4.61
146 147 6.045955 GCTTTTTGTTTTCTGTATTGGGTGA 58.954 36.000 0.00 0.00 0.00 4.02
147 148 6.019075 GCTTTTTGTTTTCTGTATTGGGTGAC 60.019 38.462 0.00 0.00 0.00 3.67
148 149 6.531503 TTTTGTTTTCTGTATTGGGTGACA 57.468 33.333 0.00 0.00 0.00 3.58
149 150 6.723298 TTTGTTTTCTGTATTGGGTGACAT 57.277 33.333 0.00 0.00 0.00 3.06
150 151 5.703978 TGTTTTCTGTATTGGGTGACATG 57.296 39.130 0.00 0.00 0.00 3.21
151 152 4.022416 TGTTTTCTGTATTGGGTGACATGC 60.022 41.667 0.00 0.00 0.00 4.06
152 153 2.022764 TCTGTATTGGGTGACATGCG 57.977 50.000 0.00 0.00 0.00 4.73
153 154 1.016627 CTGTATTGGGTGACATGCGG 58.983 55.000 0.00 0.00 0.00 5.69
154 155 0.393673 TGTATTGGGTGACATGCGGG 60.394 55.000 0.00 0.00 0.00 6.13
155 156 0.107410 GTATTGGGTGACATGCGGGA 60.107 55.000 0.00 0.00 0.00 5.14
156 157 0.107410 TATTGGGTGACATGCGGGAC 60.107 55.000 0.00 0.00 0.00 4.46
157 158 1.852157 ATTGGGTGACATGCGGGACT 61.852 55.000 0.00 0.00 0.00 3.85
158 159 2.125106 GGGTGACATGCGGGACTC 60.125 66.667 0.00 0.00 0.00 3.36
159 160 2.662596 GGTGACATGCGGGACTCA 59.337 61.111 0.00 0.00 0.00 3.41
160 161 1.741770 GGTGACATGCGGGACTCAC 60.742 63.158 3.85 3.85 33.61 3.51
161 162 1.005037 GTGACATGCGGGACTCACA 60.005 57.895 6.93 0.00 34.38 3.58
162 163 0.391661 GTGACATGCGGGACTCACAT 60.392 55.000 6.93 0.00 34.38 3.21
163 164 0.108186 TGACATGCGGGACTCACATC 60.108 55.000 0.00 0.00 0.00 3.06
164 165 0.176680 GACATGCGGGACTCACATCT 59.823 55.000 0.00 0.00 0.00 2.90
165 166 0.176680 ACATGCGGGACTCACATCTC 59.823 55.000 0.00 0.00 0.00 2.75
166 167 0.176449 CATGCGGGACTCACATCTCA 59.824 55.000 0.00 0.00 0.00 3.27
167 168 0.176680 ATGCGGGACTCACATCTCAC 59.823 55.000 0.00 0.00 0.00 3.51
168 169 1.184970 TGCGGGACTCACATCTCACA 61.185 55.000 0.00 0.00 0.00 3.58
169 170 0.459237 GCGGGACTCACATCTCACAG 60.459 60.000 0.00 0.00 0.00 3.66
170 171 1.177401 CGGGACTCACATCTCACAGA 58.823 55.000 0.00 0.00 0.00 3.41
171 172 1.133982 CGGGACTCACATCTCACAGAG 59.866 57.143 0.00 0.00 0.00 3.35
172 173 1.480137 GGGACTCACATCTCACAGAGG 59.520 57.143 0.00 0.00 32.52 3.69
173 174 2.175202 GGACTCACATCTCACAGAGGT 58.825 52.381 0.00 0.00 40.21 3.85
187 188 3.756117 ACAGAGGTGACAAAATCTTCCC 58.244 45.455 0.00 0.00 0.00 3.97
188 189 3.138283 ACAGAGGTGACAAAATCTTCCCA 59.862 43.478 0.00 0.00 0.00 4.37
189 190 3.503748 CAGAGGTGACAAAATCTTCCCAC 59.496 47.826 0.00 0.00 0.00 4.61
190 191 2.484264 GAGGTGACAAAATCTTCCCACG 59.516 50.000 0.00 0.00 0.00 4.94
191 192 2.158667 AGGTGACAAAATCTTCCCACGT 60.159 45.455 0.00 0.00 0.00 4.49
192 193 2.225727 GGTGACAAAATCTTCCCACGTC 59.774 50.000 0.00 0.00 0.00 4.34
193 194 2.875933 GTGACAAAATCTTCCCACGTCA 59.124 45.455 0.00 0.00 0.00 4.35
194 195 3.314080 GTGACAAAATCTTCCCACGTCAA 59.686 43.478 0.00 0.00 34.04 3.18
195 196 3.314080 TGACAAAATCTTCCCACGTCAAC 59.686 43.478 0.00 0.00 0.00 3.18
196 197 3.283751 ACAAAATCTTCCCACGTCAACA 58.716 40.909 0.00 0.00 0.00 3.33
197 198 3.888930 ACAAAATCTTCCCACGTCAACAT 59.111 39.130 0.00 0.00 0.00 2.71
198 199 4.229096 CAAAATCTTCCCACGTCAACATG 58.771 43.478 0.00 0.00 0.00 3.21
199 200 2.113860 ATCTTCCCACGTCAACATGG 57.886 50.000 0.00 0.00 35.59 3.66
200 201 1.052617 TCTTCCCACGTCAACATGGA 58.947 50.000 0.00 0.00 38.34 3.41
201 202 1.628340 TCTTCCCACGTCAACATGGAT 59.372 47.619 0.00 0.00 38.34 3.41
202 203 2.039746 TCTTCCCACGTCAACATGGATT 59.960 45.455 0.00 0.00 38.34 3.01
203 204 2.577606 TCCCACGTCAACATGGATTT 57.422 45.000 0.00 0.00 38.34 2.17
204 205 2.870175 TCCCACGTCAACATGGATTTT 58.130 42.857 0.00 0.00 38.34 1.82
205 206 3.226777 TCCCACGTCAACATGGATTTTT 58.773 40.909 0.00 0.00 38.34 1.94
230 231 8.590719 TTTTTAAATATTTCGAGGGCGTTTTT 57.409 26.923 3.39 0.00 38.98 1.94
231 232 7.569677 TTTAAATATTTCGAGGGCGTTTTTG 57.430 32.000 3.39 0.00 38.98 2.44
232 233 5.379732 AAATATTTCGAGGGCGTTTTTGA 57.620 34.783 0.00 0.00 38.98 2.69
233 234 5.379732 AATATTTCGAGGGCGTTTTTGAA 57.620 34.783 0.00 0.00 38.98 2.69
234 235 3.719173 ATTTCGAGGGCGTTTTTGAAA 57.281 38.095 0.00 0.00 38.98 2.69
235 236 3.505464 TTTCGAGGGCGTTTTTGAAAA 57.495 38.095 0.00 0.00 38.98 2.29
236 237 3.505464 TTCGAGGGCGTTTTTGAAAAA 57.495 38.095 0.00 0.00 38.98 1.94
260 261 4.972875 CCACATGGCCCTTCTCTC 57.027 61.111 0.00 0.00 0.00 3.20
261 262 2.305095 CCACATGGCCCTTCTCTCT 58.695 57.895 0.00 0.00 0.00 3.10
262 263 0.107312 CCACATGGCCCTTCTCTCTG 60.107 60.000 0.00 0.00 0.00 3.35
263 264 0.107312 CACATGGCCCTTCTCTCTGG 60.107 60.000 0.00 0.00 0.00 3.86
264 265 0.548682 ACATGGCCCTTCTCTCTGGT 60.549 55.000 0.00 0.00 0.00 4.00
265 266 0.179936 CATGGCCCTTCTCTCTGGTC 59.820 60.000 0.00 0.00 0.00 4.02
266 267 1.333636 ATGGCCCTTCTCTCTGGTCG 61.334 60.000 0.00 0.00 0.00 4.79
267 268 1.682684 GGCCCTTCTCTCTGGTCGA 60.683 63.158 0.00 0.00 0.00 4.20
268 269 1.671901 GGCCCTTCTCTCTGGTCGAG 61.672 65.000 0.00 0.00 41.30 4.04
269 270 1.813192 CCCTTCTCTCTGGTCGAGC 59.187 63.158 7.89 7.89 39.70 5.03
270 271 1.431440 CCTTCTCTCTGGTCGAGCG 59.569 63.158 10.46 5.17 39.70 5.03
271 272 1.431440 CTTCTCTCTGGTCGAGCGG 59.569 63.158 17.38 17.38 39.70 5.52
272 273 2.606155 CTTCTCTCTGGTCGAGCGGC 62.606 65.000 18.61 0.00 39.70 6.53
273 274 3.137459 CTCTCTGGTCGAGCGGCT 61.137 66.667 18.61 0.00 39.70 5.52
274 275 3.408501 CTCTCTGGTCGAGCGGCTG 62.409 68.421 18.61 13.17 39.70 4.85
275 276 3.443925 CTCTGGTCGAGCGGCTGA 61.444 66.667 18.61 8.60 31.99 4.26
276 277 3.691744 CTCTGGTCGAGCGGCTGAC 62.692 68.421 18.61 14.86 31.99 3.51
280 281 2.887568 GTCGAGCGGCTGACCATG 60.888 66.667 7.50 0.00 34.57 3.66
281 282 4.147449 TCGAGCGGCTGACCATGG 62.147 66.667 11.19 11.19 34.57 3.66
288 289 4.147587 GCTGACCATGGGCCCCAT 62.148 66.667 22.27 10.28 46.37 4.00
298 299 4.937431 GGCCCCATGCGCCTAGTC 62.937 72.222 4.18 0.00 43.48 2.59
299 300 4.175337 GCCCCATGCGCCTAGTCA 62.175 66.667 4.18 0.00 0.00 3.41
300 301 2.109799 CCCCATGCGCCTAGTCAG 59.890 66.667 4.18 0.00 0.00 3.51
301 302 2.590007 CCCATGCGCCTAGTCAGC 60.590 66.667 4.18 0.00 0.00 4.26
302 303 2.187685 CCATGCGCCTAGTCAGCA 59.812 61.111 4.18 6.50 45.46 4.41
303 304 2.176273 CCATGCGCCTAGTCAGCAC 61.176 63.158 4.18 0.00 44.12 4.40
304 305 1.448365 CATGCGCCTAGTCAGCACA 60.448 57.895 4.18 0.00 44.12 4.57
305 306 0.812811 CATGCGCCTAGTCAGCACAT 60.813 55.000 4.18 0.00 44.12 3.21
306 307 0.752658 ATGCGCCTAGTCAGCACATA 59.247 50.000 4.18 0.00 44.12 2.29
307 308 0.179111 TGCGCCTAGTCAGCACATAC 60.179 55.000 4.18 0.00 35.81 2.39
308 309 0.103208 GCGCCTAGTCAGCACATACT 59.897 55.000 0.00 0.00 0.00 2.12
309 310 1.866063 GCGCCTAGTCAGCACATACTC 60.866 57.143 0.00 0.00 0.00 2.59
310 311 1.269309 CGCCTAGTCAGCACATACTCC 60.269 57.143 0.00 0.00 0.00 3.85
311 312 1.269309 GCCTAGTCAGCACATACTCCG 60.269 57.143 0.00 0.00 0.00 4.63
312 313 2.025155 CCTAGTCAGCACATACTCCGT 58.975 52.381 0.00 0.00 0.00 4.69
313 314 3.211865 CCTAGTCAGCACATACTCCGTA 58.788 50.000 0.00 0.00 0.00 4.02
314 315 3.003482 CCTAGTCAGCACATACTCCGTAC 59.997 52.174 0.00 0.00 0.00 3.67
315 316 2.443416 AGTCAGCACATACTCCGTACA 58.557 47.619 0.00 0.00 0.00 2.90
316 317 3.024547 AGTCAGCACATACTCCGTACAT 58.975 45.455 0.00 0.00 0.00 2.29
317 318 4.204799 AGTCAGCACATACTCCGTACATA 58.795 43.478 0.00 0.00 0.00 2.29
318 319 4.643334 AGTCAGCACATACTCCGTACATAA 59.357 41.667 0.00 0.00 0.00 1.90
319 320 4.976731 GTCAGCACATACTCCGTACATAAG 59.023 45.833 0.00 0.00 0.00 1.73
320 321 3.736252 CAGCACATACTCCGTACATAAGC 59.264 47.826 0.00 0.00 0.00 3.09
321 322 2.724690 GCACATACTCCGTACATAAGCG 59.275 50.000 0.00 0.00 0.00 4.68
322 323 2.724690 CACATACTCCGTACATAAGCGC 59.275 50.000 0.00 0.00 0.00 5.92
323 324 1.976728 CATACTCCGTACATAAGCGCG 59.023 52.381 0.00 0.00 0.00 6.86
324 325 1.298602 TACTCCGTACATAAGCGCGA 58.701 50.000 12.10 0.00 0.00 5.87
325 326 0.666913 ACTCCGTACATAAGCGCGAT 59.333 50.000 12.10 0.00 0.00 4.58
326 327 1.875514 ACTCCGTACATAAGCGCGATA 59.124 47.619 12.10 1.50 0.00 2.92
327 328 2.291465 ACTCCGTACATAAGCGCGATAA 59.709 45.455 12.10 0.00 0.00 1.75
328 329 2.909244 CTCCGTACATAAGCGCGATAAG 59.091 50.000 12.10 1.15 0.00 1.73
329 330 1.385743 CCGTACATAAGCGCGATAAGC 59.614 52.381 12.10 0.00 43.95 3.09
342 343 2.969055 CGATAAGCACCGTATTTGCAC 58.031 47.619 0.00 0.00 42.83 4.57
343 344 2.596575 CGATAAGCACCGTATTTGCACG 60.597 50.000 0.00 0.00 42.83 5.34
344 345 1.798283 TAAGCACCGTATTTGCACGT 58.202 45.000 0.00 0.00 42.83 4.49
345 346 0.948678 AAGCACCGTATTTGCACGTT 59.051 45.000 0.00 0.00 42.83 3.99
346 347 1.798283 AGCACCGTATTTGCACGTTA 58.202 45.000 0.00 0.00 42.83 3.18
347 348 2.144730 AGCACCGTATTTGCACGTTAA 58.855 42.857 0.00 0.00 42.83 2.01
348 349 2.745281 AGCACCGTATTTGCACGTTAAT 59.255 40.909 0.00 0.00 42.83 1.40
349 350 2.843643 GCACCGTATTTGCACGTTAATG 59.156 45.455 0.00 0.00 40.31 1.90
350 351 3.668491 GCACCGTATTTGCACGTTAATGT 60.668 43.478 0.00 0.00 40.31 2.71
351 352 4.085884 CACCGTATTTGCACGTTAATGTC 58.914 43.478 0.00 0.00 40.31 3.06
352 353 3.747010 ACCGTATTTGCACGTTAATGTCA 59.253 39.130 0.00 0.00 40.31 3.58
353 354 4.213694 ACCGTATTTGCACGTTAATGTCAA 59.786 37.500 0.00 3.39 40.31 3.18
354 355 4.786068 CCGTATTTGCACGTTAATGTCAAG 59.214 41.667 0.00 0.00 40.31 3.02
355 356 5.379003 CGTATTTGCACGTTAATGTCAAGT 58.621 37.500 0.00 5.56 37.16 3.16
356 357 5.849081 CGTATTTGCACGTTAATGTCAAGTT 59.151 36.000 0.00 1.68 37.16 2.66
357 358 6.358558 CGTATTTGCACGTTAATGTCAAGTTT 59.641 34.615 0.00 0.00 37.16 2.66
358 359 7.096803 CGTATTTGCACGTTAATGTCAAGTTTT 60.097 33.333 0.00 0.00 37.16 2.43
359 360 6.952935 TTTGCACGTTAATGTCAAGTTTTT 57.047 29.167 0.00 0.00 0.00 1.94
360 361 5.940603 TGCACGTTAATGTCAAGTTTTTG 57.059 34.783 0.00 0.00 35.57 2.44
361 362 4.266502 TGCACGTTAATGTCAAGTTTTTGC 59.733 37.500 0.00 0.00 34.21 3.68
362 363 4.266502 GCACGTTAATGTCAAGTTTTTGCA 59.733 37.500 0.00 0.00 34.21 4.08
363 364 5.713281 CACGTTAATGTCAAGTTTTTGCAC 58.287 37.500 0.00 0.00 34.21 4.57
364 365 4.801516 ACGTTAATGTCAAGTTTTTGCACC 59.198 37.500 0.00 0.00 34.21 5.01
365 366 4.800993 CGTTAATGTCAAGTTTTTGCACCA 59.199 37.500 0.00 0.00 34.21 4.17
366 367 5.276161 CGTTAATGTCAAGTTTTTGCACCAC 60.276 40.000 0.00 0.00 34.21 4.16
367 368 4.470334 AATGTCAAGTTTTTGCACCACT 57.530 36.364 0.00 0.00 34.21 4.00
368 369 3.951775 TGTCAAGTTTTTGCACCACTT 57.048 38.095 0.00 0.00 34.21 3.16
369 370 3.843999 TGTCAAGTTTTTGCACCACTTC 58.156 40.909 2.08 0.00 34.21 3.01
370 371 3.256879 TGTCAAGTTTTTGCACCACTTCA 59.743 39.130 2.08 0.00 34.21 3.02
371 372 4.241681 GTCAAGTTTTTGCACCACTTCAA 58.758 39.130 2.08 0.00 34.21 2.69
372 373 4.869861 GTCAAGTTTTTGCACCACTTCAAT 59.130 37.500 2.08 0.00 34.21 2.57
373 374 4.869297 TCAAGTTTTTGCACCACTTCAATG 59.131 37.500 2.08 0.00 34.21 2.82
374 375 4.470334 AGTTTTTGCACCACTTCAATGT 57.530 36.364 0.00 0.00 0.00 2.71
375 376 5.590530 AGTTTTTGCACCACTTCAATGTA 57.409 34.783 0.00 0.00 0.00 2.29
376 377 5.348164 AGTTTTTGCACCACTTCAATGTAC 58.652 37.500 0.00 0.00 0.00 2.90
377 378 4.991153 TTTTGCACCACTTCAATGTACA 57.009 36.364 0.00 0.00 0.00 2.90
378 379 3.980646 TTGCACCACTTCAATGTACAC 57.019 42.857 0.00 0.00 0.00 2.90
379 380 2.226330 TGCACCACTTCAATGTACACC 58.774 47.619 0.00 0.00 0.00 4.16
380 381 2.226330 GCACCACTTCAATGTACACCA 58.774 47.619 0.00 0.00 0.00 4.17
381 382 2.031157 GCACCACTTCAATGTACACCAC 60.031 50.000 0.00 0.00 0.00 4.16
382 383 3.210227 CACCACTTCAATGTACACCACA 58.790 45.455 0.00 0.00 42.69 4.17
383 384 3.629855 CACCACTTCAATGTACACCACAA 59.370 43.478 0.00 0.00 41.55 3.33
384 385 3.630312 ACCACTTCAATGTACACCACAAC 59.370 43.478 0.00 0.00 41.55 3.32
385 386 3.882888 CCACTTCAATGTACACCACAACT 59.117 43.478 0.00 0.00 41.55 3.16
386 387 4.338118 CCACTTCAATGTACACCACAACTT 59.662 41.667 0.00 0.00 41.55 2.66
387 388 5.505654 CCACTTCAATGTACACCACAACTTC 60.506 44.000 0.00 0.00 41.55 3.01
388 389 5.296780 CACTTCAATGTACACCACAACTTCT 59.703 40.000 0.00 0.00 41.55 2.85
389 390 6.481976 CACTTCAATGTACACCACAACTTCTA 59.518 38.462 0.00 0.00 41.55 2.10
390 391 6.706270 ACTTCAATGTACACCACAACTTCTAG 59.294 38.462 0.00 0.00 41.55 2.43
391 392 4.994852 TCAATGTACACCACAACTTCTAGC 59.005 41.667 0.00 0.00 41.55 3.42
392 393 4.617253 ATGTACACCACAACTTCTAGCA 57.383 40.909 0.00 0.00 41.55 3.49
393 394 4.617253 TGTACACCACAACTTCTAGCAT 57.383 40.909 0.00 0.00 32.95 3.79
394 395 4.566004 TGTACACCACAACTTCTAGCATC 58.434 43.478 0.00 0.00 32.95 3.91
395 396 3.769739 ACACCACAACTTCTAGCATCA 57.230 42.857 0.00 0.00 0.00 3.07
396 397 4.085357 ACACCACAACTTCTAGCATCAA 57.915 40.909 0.00 0.00 0.00 2.57
397 398 4.460263 ACACCACAACTTCTAGCATCAAA 58.540 39.130 0.00 0.00 0.00 2.69
398 399 4.516698 ACACCACAACTTCTAGCATCAAAG 59.483 41.667 0.00 0.00 0.00 2.77
399 400 4.516698 CACCACAACTTCTAGCATCAAAGT 59.483 41.667 0.00 0.00 34.81 2.66
400 401 4.516698 ACCACAACTTCTAGCATCAAAGTG 59.483 41.667 0.00 0.00 33.68 3.16
401 402 4.756642 CCACAACTTCTAGCATCAAAGTGA 59.243 41.667 0.00 0.00 33.68 3.41
402 403 5.334414 CCACAACTTCTAGCATCAAAGTGAC 60.334 44.000 0.00 0.00 33.68 3.67
403 404 4.757149 ACAACTTCTAGCATCAAAGTGACC 59.243 41.667 0.00 0.00 33.68 4.02
404 405 4.623932 ACTTCTAGCATCAAAGTGACCA 57.376 40.909 0.00 0.00 32.22 4.02
405 406 5.171339 ACTTCTAGCATCAAAGTGACCAT 57.829 39.130 0.00 0.00 32.22 3.55
406 407 5.564550 ACTTCTAGCATCAAAGTGACCATT 58.435 37.500 0.00 0.00 32.22 3.16
407 408 6.006449 ACTTCTAGCATCAAAGTGACCATTT 58.994 36.000 0.00 0.00 32.22 2.32
408 409 7.168219 ACTTCTAGCATCAAAGTGACCATTTA 58.832 34.615 0.00 0.00 32.22 1.40
409 410 6.985188 TCTAGCATCAAAGTGACCATTTAC 57.015 37.500 0.00 0.00 0.00 2.01
410 411 4.685169 AGCATCAAAGTGACCATTTACG 57.315 40.909 0.00 0.00 0.00 3.18
411 412 3.119849 AGCATCAAAGTGACCATTTACGC 60.120 43.478 0.00 0.00 0.00 4.42
412 413 3.758300 CATCAAAGTGACCATTTACGCC 58.242 45.455 0.00 0.00 0.00 5.68
413 414 2.852449 TCAAAGTGACCATTTACGCCA 58.148 42.857 0.00 0.00 0.00 5.69
414 415 3.215151 TCAAAGTGACCATTTACGCCAA 58.785 40.909 0.00 0.00 0.00 4.52
415 416 3.252215 TCAAAGTGACCATTTACGCCAAG 59.748 43.478 0.00 0.00 0.00 3.61
416 417 2.561478 AGTGACCATTTACGCCAAGT 57.439 45.000 0.00 0.00 0.00 3.16
417 418 2.858745 AGTGACCATTTACGCCAAGTT 58.141 42.857 0.00 0.00 0.00 2.66
418 419 4.010667 AGTGACCATTTACGCCAAGTTA 57.989 40.909 0.00 0.00 0.00 2.24
419 420 4.585879 AGTGACCATTTACGCCAAGTTAT 58.414 39.130 0.00 0.00 0.00 1.89
420 421 5.736813 AGTGACCATTTACGCCAAGTTATA 58.263 37.500 0.00 0.00 0.00 0.98
421 422 5.815740 AGTGACCATTTACGCCAAGTTATAG 59.184 40.000 0.00 0.00 0.00 1.31
422 423 4.573201 TGACCATTTACGCCAAGTTATAGC 59.427 41.667 0.00 0.00 0.00 2.97
423 424 4.519213 ACCATTTACGCCAAGTTATAGCA 58.481 39.130 0.00 0.00 0.00 3.49
424 425 4.334481 ACCATTTACGCCAAGTTATAGCAC 59.666 41.667 0.00 0.00 0.00 4.40
425 426 4.261031 CCATTTACGCCAAGTTATAGCACC 60.261 45.833 0.00 0.00 0.00 5.01
426 427 3.613494 TTACGCCAAGTTATAGCACCA 57.387 42.857 0.00 0.00 0.00 4.17
427 428 2.710096 ACGCCAAGTTATAGCACCAT 57.290 45.000 0.00 0.00 0.00 3.55
428 429 2.561569 ACGCCAAGTTATAGCACCATC 58.438 47.619 0.00 0.00 0.00 3.51
429 430 2.093181 ACGCCAAGTTATAGCACCATCA 60.093 45.455 0.00 0.00 0.00 3.07
430 431 2.545526 CGCCAAGTTATAGCACCATCAG 59.454 50.000 0.00 0.00 0.00 2.90
431 432 3.545703 GCCAAGTTATAGCACCATCAGT 58.454 45.455 0.00 0.00 0.00 3.41
445 446 6.808008 CACCATCAGTGTAATTGACTCTTT 57.192 37.500 0.00 0.00 41.93 2.52
446 447 7.206981 CACCATCAGTGTAATTGACTCTTTT 57.793 36.000 0.00 0.00 41.93 2.27
447 448 7.651808 CACCATCAGTGTAATTGACTCTTTTT 58.348 34.615 0.00 0.00 41.93 1.94
450 451 9.219603 CCATCAGTGTAATTGACTCTTTTTCTA 57.780 33.333 0.00 0.00 34.53 2.10
515 518 7.010738 GCGTGTAAGTTATTATAAGCACCTTCA 59.989 37.037 0.00 0.00 37.41 3.02
538 541 6.015350 TCACCTAACTGAAGTTACAAGGAGAG 60.015 42.308 14.61 6.71 39.31 3.20
631 645 2.236395 AGAGTTAATGCAGCCGGTTAGT 59.764 45.455 1.90 0.00 0.00 2.24
690 712 1.822371 GGCGTTGTGGGTATTTTCCAT 59.178 47.619 0.00 0.00 36.58 3.41
722 749 4.135153 CGGCGAGGACAGGGACAG 62.135 72.222 0.00 0.00 0.00 3.51
764 795 1.469940 GGACGACGAGCAATCAGTGAT 60.470 52.381 0.00 0.00 0.00 3.06
797 828 3.672255 GATCCGTCGAACGTCGCCA 62.672 63.158 8.11 0.00 40.58 5.69
929 980 4.164604 ACCTATAAGAATGCCACCCGTAAA 59.835 41.667 0.00 0.00 0.00 2.01
946 997 1.029681 AAACCAGCCGGAGAAAACAC 58.970 50.000 5.05 0.00 35.59 3.32
947 998 0.106918 AACCAGCCGGAGAAAACACA 60.107 50.000 5.05 0.00 35.59 3.72
948 999 0.818040 ACCAGCCGGAGAAAACACAC 60.818 55.000 5.05 0.00 35.59 3.82
949 1000 1.569493 CAGCCGGAGAAAACACACG 59.431 57.895 5.05 0.00 0.00 4.49
951 1002 0.600255 AGCCGGAGAAAACACACGAG 60.600 55.000 5.05 0.00 0.00 4.18
952 1003 0.599204 GCCGGAGAAAACACACGAGA 60.599 55.000 5.05 0.00 0.00 4.04
953 1004 1.137513 CCGGAGAAAACACACGAGAC 58.862 55.000 0.00 0.00 0.00 3.36
960 1017 1.274596 AAACACACGAGACACACGAC 58.725 50.000 0.00 0.00 34.70 4.34
1108 1189 1.918467 CTGGCTGAGGCTTCCCATCA 61.918 60.000 7.74 0.00 38.73 3.07
1176 1278 1.768077 GGGGTCAGGGCTCAGCTAT 60.768 63.158 0.00 0.00 0.00 2.97
1211 1328 4.577246 CTGCCCTAGCGCGGAGAC 62.577 72.222 8.83 6.25 44.31 3.36
1224 1341 1.352404 GGAGACGATCGTCACGGAG 59.648 63.158 40.51 4.75 46.76 4.63
1244 1361 4.003788 CGTGAGGAAGGCCGTGGT 62.004 66.667 0.00 0.00 39.96 4.16
1247 1926 3.692406 GAGGAAGGCCGTGGTCGT 61.692 66.667 0.00 0.00 39.96 4.34
1248 1927 3.934391 GAGGAAGGCCGTGGTCGTG 62.934 68.421 0.00 0.00 39.96 4.35
1250 1929 3.998672 GAAGGCCGTGGTCGTGGA 61.999 66.667 0.00 0.00 35.01 4.02
1251 1930 3.310860 GAAGGCCGTGGTCGTGGAT 62.311 63.158 0.00 0.00 35.01 3.41
1252 1931 1.952102 GAAGGCCGTGGTCGTGGATA 61.952 60.000 0.00 0.00 35.01 2.59
1341 2026 2.096174 ACACAGCTCGTCGATTCTACTC 59.904 50.000 0.00 0.00 0.00 2.59
1345 2030 1.658094 GCTCGTCGATTCTACTCGCTC 60.658 57.143 0.00 0.00 38.52 5.03
1346 2031 1.862201 CTCGTCGATTCTACTCGCTCT 59.138 52.381 0.00 0.00 38.52 4.09
1350 2043 3.356145 GTCGATTCTACTCGCTCTGTTC 58.644 50.000 0.00 0.00 38.52 3.18
1358 2051 5.408356 TCTACTCGCTCTGTTCCAAAATAC 58.592 41.667 0.00 0.00 0.00 1.89
1359 2052 4.002906 ACTCGCTCTGTTCCAAAATACA 57.997 40.909 0.00 0.00 0.00 2.29
1360 2053 4.385825 ACTCGCTCTGTTCCAAAATACAA 58.614 39.130 0.00 0.00 0.00 2.41
1362 2055 4.637276 TCGCTCTGTTCCAAAATACAAGA 58.363 39.130 0.00 0.00 0.00 3.02
1363 2056 5.060506 TCGCTCTGTTCCAAAATACAAGAA 58.939 37.500 0.00 0.00 0.00 2.52
1365 2058 5.147162 GCTCTGTTCCAAAATACAAGAACG 58.853 41.667 0.00 0.00 41.17 3.95
1366 2059 5.277828 GCTCTGTTCCAAAATACAAGAACGT 60.278 40.000 0.00 0.00 41.17 3.99
1367 2060 6.687081 TCTGTTCCAAAATACAAGAACGTT 57.313 33.333 0.00 0.00 41.17 3.99
1368 2061 7.519328 GCTCTGTTCCAAAATACAAGAACGTTA 60.519 37.037 0.00 0.00 41.17 3.18
1369 2062 7.632721 TCTGTTCCAAAATACAAGAACGTTAC 58.367 34.615 0.00 0.00 41.17 2.50
1370 2063 6.420588 TGTTCCAAAATACAAGAACGTTACG 58.579 36.000 0.00 2.19 41.17 3.18
1393 2110 5.564259 CGTTCTTGTATTATAGGACGGAGGG 60.564 48.000 0.00 0.00 39.22 4.30
1397 2114 4.404640 TGTATTATAGGACGGAGGGAGTG 58.595 47.826 0.00 0.00 0.00 3.51
1398 2115 2.376695 TTATAGGACGGAGGGAGTGG 57.623 55.000 0.00 0.00 0.00 4.00
1399 2116 0.178970 TATAGGACGGAGGGAGTGGC 60.179 60.000 0.00 0.00 0.00 5.01
1401 2118 2.164332 TAGGACGGAGGGAGTGGCTT 62.164 60.000 0.00 0.00 0.00 4.35
1404 2121 0.389757 GACGGAGGGAGTGGCTTATC 59.610 60.000 0.00 0.00 0.00 1.75
1405 2122 0.325296 ACGGAGGGAGTGGCTTATCA 60.325 55.000 0.00 0.00 0.00 2.15
1406 2123 0.830648 CGGAGGGAGTGGCTTATCAA 59.169 55.000 0.00 0.00 0.00 2.57
1407 2124 1.473434 CGGAGGGAGTGGCTTATCAAC 60.473 57.143 0.00 0.00 0.00 3.18
1408 2125 1.559682 GGAGGGAGTGGCTTATCAACA 59.440 52.381 0.00 0.00 0.00 3.33
1409 2126 2.173569 GGAGGGAGTGGCTTATCAACAT 59.826 50.000 0.00 0.00 0.00 2.71
1410 2127 3.372025 GGAGGGAGTGGCTTATCAACATT 60.372 47.826 0.00 0.00 0.00 2.71
1411 2128 4.273318 GAGGGAGTGGCTTATCAACATTT 58.727 43.478 0.00 0.00 0.00 2.32
1412 2129 4.273318 AGGGAGTGGCTTATCAACATTTC 58.727 43.478 0.00 0.00 0.00 2.17
1413 2130 4.018050 AGGGAGTGGCTTATCAACATTTCT 60.018 41.667 0.00 0.00 0.00 2.52
1414 2131 4.706962 GGGAGTGGCTTATCAACATTTCTT 59.293 41.667 0.00 0.00 0.00 2.52
1415 2132 5.163612 GGGAGTGGCTTATCAACATTTCTTC 60.164 44.000 0.00 0.00 0.00 2.87
1416 2133 5.163612 GGAGTGGCTTATCAACATTTCTTCC 60.164 44.000 0.00 0.00 0.00 3.46
1417 2134 5.324409 AGTGGCTTATCAACATTTCTTCCA 58.676 37.500 0.00 0.00 0.00 3.53
1418 2135 5.183904 AGTGGCTTATCAACATTTCTTCCAC 59.816 40.000 0.00 0.00 40.19 4.02
1419 2136 4.155826 TGGCTTATCAACATTTCTTCCACG 59.844 41.667 0.00 0.00 0.00 4.94
1432 2149 1.195448 CTTCCACGACTGCATTGTCAC 59.805 52.381 6.87 0.00 36.82 3.67
1433 2150 0.943835 TCCACGACTGCATTGTCACG 60.944 55.000 6.87 0.00 36.82 4.35
1478 2219 2.658679 TTATCCAGGGGTGCGATGCG 62.659 60.000 0.00 0.00 0.00 4.73
1514 2255 1.485066 ACGACCAACTCCAAGAACAGT 59.515 47.619 0.00 0.00 0.00 3.55
1544 2285 1.155155 GGAAGGCCCTCCCAACAAA 59.845 57.895 9.53 0.00 35.39 2.83
1586 2327 1.476891 GTGATCTACGAGGCCAAGACA 59.523 52.381 5.01 1.22 0.00 3.41
1607 2348 4.845580 ATCGAGGCCGCCTGCAAG 62.846 66.667 19.21 5.55 43.89 4.01
1912 2784 0.464373 AACCAGACATATGCCGCCAG 60.464 55.000 1.58 0.00 0.00 4.85
1918 2790 1.303074 CATATGCCGCCAGCCTCAT 60.303 57.895 0.00 0.00 42.71 2.90
1962 2834 1.065709 ACACCAACGTGAACCAAGACT 60.066 47.619 0.00 0.00 43.14 3.24
2057 2929 1.371267 CGTGCTCAACTCGACGGAA 60.371 57.895 0.00 0.00 37.45 4.30
2070 2942 1.058404 GACGGAAGAAACGAGAACGG 58.942 55.000 0.00 0.00 44.46 4.44
2151 3036 7.447853 CCATGGAGAAAATGGGAAAAATCAAAA 59.552 33.333 5.56 0.00 40.86 2.44
2208 3093 5.945155 GTTGGAAAGTCAACAACAACTACA 58.055 37.500 0.00 0.00 44.51 2.74
2209 3094 6.383415 GTTGGAAAGTCAACAACAACTACAA 58.617 36.000 0.00 0.00 44.51 2.41
2210 3095 6.576662 TGGAAAGTCAACAACAACTACAAA 57.423 33.333 0.00 0.00 0.00 2.83
2214 3099 9.233232 GGAAAGTCAACAACAACTACAAATAAG 57.767 33.333 0.00 0.00 0.00 1.73
2347 3238 0.177836 TCTCCCTGTGTGTGTGTGTG 59.822 55.000 0.00 0.00 0.00 3.82
2348 3239 0.177836 CTCCCTGTGTGTGTGTGTGA 59.822 55.000 0.00 0.00 0.00 3.58
2349 3240 0.177836 TCCCTGTGTGTGTGTGTGAG 59.822 55.000 0.00 0.00 0.00 3.51
2350 3241 0.177836 CCCTGTGTGTGTGTGTGAGA 59.822 55.000 0.00 0.00 0.00 3.27
2351 3242 1.575244 CCTGTGTGTGTGTGTGAGAG 58.425 55.000 0.00 0.00 0.00 3.20
2352 3243 1.136891 CCTGTGTGTGTGTGTGAGAGA 59.863 52.381 0.00 0.00 0.00 3.10
2353 3244 2.467838 CTGTGTGTGTGTGTGAGAGAG 58.532 52.381 0.00 0.00 0.00 3.20
2354 3245 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
2355 3246 2.099756 TGTGTGTGTGTGTGAGAGAGAG 59.900 50.000 0.00 0.00 0.00 3.20
2356 3247 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
2357 3248 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
2358 3249 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
2359 3250 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
2360 3251 3.181450 TGTGTGTGTGAGAGAGAGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
2361 3252 3.436704 GTGTGTGTGAGAGAGAGAGAGAG 59.563 52.174 0.00 0.00 0.00 3.20
2362 3253 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
2363 3254 3.935203 GTGTGTGAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
2364 3255 3.582647 TGTGTGAGAGAGAGAGAGAGAGT 59.417 47.826 0.00 0.00 0.00 3.24
2365 3256 3.935203 GTGTGAGAGAGAGAGAGAGAGTG 59.065 52.174 0.00 0.00 0.00 3.51
2366 3257 3.837731 TGTGAGAGAGAGAGAGAGAGTGA 59.162 47.826 0.00 0.00 0.00 3.41
2367 3258 4.081476 TGTGAGAGAGAGAGAGAGAGTGAG 60.081 50.000 0.00 0.00 0.00 3.51
2368 3259 4.081420 GTGAGAGAGAGAGAGAGAGTGAGT 60.081 50.000 0.00 0.00 0.00 3.41
2369 3260 4.081476 TGAGAGAGAGAGAGAGAGTGAGTG 60.081 50.000 0.00 0.00 0.00 3.51
2370 3261 4.096681 AGAGAGAGAGAGAGAGTGAGTGA 58.903 47.826 0.00 0.00 0.00 3.41
2371 3262 4.161189 AGAGAGAGAGAGAGAGTGAGTGAG 59.839 50.000 0.00 0.00 0.00 3.51
2372 3263 3.840666 AGAGAGAGAGAGAGTGAGTGAGT 59.159 47.826 0.00 0.00 0.00 3.41
2373 3264 3.935203 GAGAGAGAGAGAGTGAGTGAGTG 59.065 52.174 0.00 0.00 0.00 3.51
2374 3265 3.582647 AGAGAGAGAGAGTGAGTGAGTGA 59.417 47.826 0.00 0.00 0.00 3.41
2415 3358 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2470 3416 9.570488 GTATGTTTAGTACTTCAGTTCACCTAG 57.430 37.037 0.00 0.00 0.00 3.02
2476 3587 6.550163 AGTACTTCAGTTCACCTAGGACTAA 58.450 40.000 17.98 3.34 28.38 2.24
2483 3594 7.612677 TCAGTTCACCTAGGACTAATTTTCTC 58.387 38.462 17.98 0.00 0.00 2.87
2492 3603 6.224420 AGGACTAATTTTCTCGTTGTTTCG 57.776 37.500 0.00 0.00 0.00 3.46
2498 3609 3.156334 CTCGTTGTTTCGGGCGAG 58.844 61.111 0.00 0.00 43.42 5.03
2499 3610 3.011760 CTCGTTGTTTCGGGCGAGC 62.012 63.158 0.00 0.00 43.02 5.03
2558 3696 9.374838 GCATTCATTTTCTCATTTGGTCTTAAT 57.625 29.630 0.00 0.00 0.00 1.40
2573 3712 9.921637 TTTGGTCTTAATAAATGATTGAACCAC 57.078 29.630 0.00 0.00 35.82 4.16
2592 3736 4.024048 ACCACTAGTTGCAGTCATTTTTCG 60.024 41.667 0.00 0.00 0.00 3.46
2682 3828 6.656693 CCTCTTTTTCTAGAATGCTCTCCAAA 59.343 38.462 5.89 0.61 32.70 3.28
2683 3829 7.338957 CCTCTTTTTCTAGAATGCTCTCCAAAT 59.661 37.037 5.89 0.00 32.70 2.32
2684 3830 9.388506 CTCTTTTTCTAGAATGCTCTCCAAATA 57.611 33.333 5.89 0.00 32.70 1.40
2685 3831 9.911788 TCTTTTTCTAGAATGCTCTCCAAATAT 57.088 29.630 5.89 0.00 32.70 1.28
2774 3920 4.913335 AAATCACTAGCATGGCATTGAG 57.087 40.909 0.00 0.00 0.00 3.02
2781 3927 4.878397 ACTAGCATGGCATTGAGTAAGTTC 59.122 41.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.733458 GGAACGGGTAAAAACTTTATCTATTGT 58.267 33.333 0.00 0.00 0.00 2.71
30 31 3.053831 TCAGTTTCCTTCATCCGGAAC 57.946 47.619 9.01 0.00 40.09 3.62
31 32 3.408634 GTTCAGTTTCCTTCATCCGGAA 58.591 45.455 9.01 0.00 38.71 4.30
32 33 2.611971 CGTTCAGTTTCCTTCATCCGGA 60.612 50.000 6.61 6.61 0.00 5.14
33 34 1.732259 CGTTCAGTTTCCTTCATCCGG 59.268 52.381 0.00 0.00 0.00 5.14
34 35 1.732259 CCGTTCAGTTTCCTTCATCCG 59.268 52.381 0.00 0.00 0.00 4.18
35 36 2.084546 CCCGTTCAGTTTCCTTCATCC 58.915 52.381 0.00 0.00 0.00 3.51
36 37 2.484264 CACCCGTTCAGTTTCCTTCATC 59.516 50.000 0.00 0.00 0.00 2.92
37 38 2.504367 CACCCGTTCAGTTTCCTTCAT 58.496 47.619 0.00 0.00 0.00 2.57
38 39 1.961793 CACCCGTTCAGTTTCCTTCA 58.038 50.000 0.00 0.00 0.00 3.02
39 40 0.591659 GCACCCGTTCAGTTTCCTTC 59.408 55.000 0.00 0.00 0.00 3.46
40 41 0.106918 TGCACCCGTTCAGTTTCCTT 60.107 50.000 0.00 0.00 0.00 3.36
41 42 0.535102 CTGCACCCGTTCAGTTTCCT 60.535 55.000 0.00 0.00 0.00 3.36
42 43 0.818040 ACTGCACCCGTTCAGTTTCC 60.818 55.000 0.00 0.00 40.32 3.13
43 44 0.307760 CACTGCACCCGTTCAGTTTC 59.692 55.000 0.00 0.00 41.19 2.78
44 45 1.101049 CCACTGCACCCGTTCAGTTT 61.101 55.000 0.00 0.00 41.19 2.66
45 46 1.525995 CCACTGCACCCGTTCAGTT 60.526 57.895 0.00 0.00 41.19 3.16
46 47 2.111043 CCACTGCACCCGTTCAGT 59.889 61.111 0.00 0.00 43.67 3.41
47 48 1.101049 AAACCACTGCACCCGTTCAG 61.101 55.000 0.00 0.00 36.45 3.02
48 49 1.077357 AAACCACTGCACCCGTTCA 60.077 52.632 0.00 0.00 0.00 3.18
49 50 1.358759 CAAACCACTGCACCCGTTC 59.641 57.895 0.00 0.00 0.00 3.95
50 51 2.781158 GCAAACCACTGCACCCGTT 61.781 57.895 0.00 0.00 42.17 4.44
51 52 3.216292 GCAAACCACTGCACCCGT 61.216 61.111 0.00 0.00 42.17 5.28
52 53 3.977244 GGCAAACCACTGCACCCG 61.977 66.667 0.00 0.00 44.52 5.28
53 54 3.977244 CGGCAAACCACTGCACCC 61.977 66.667 0.00 0.00 44.52 4.61
54 55 4.645921 GCGGCAAACCACTGCACC 62.646 66.667 0.00 0.00 44.52 5.01
55 56 4.645921 GGCGGCAAACCACTGCAC 62.646 66.667 3.07 0.00 44.52 4.57
56 57 4.892965 AGGCGGCAAACCACTGCA 62.893 61.111 13.08 0.00 44.52 4.41
57 58 4.043200 GAGGCGGCAAACCACTGC 62.043 66.667 13.08 0.00 41.85 4.40
58 59 3.726517 CGAGGCGGCAAACCACTG 61.727 66.667 13.08 0.00 34.57 3.66
59 60 3.767630 AACGAGGCGGCAAACCACT 62.768 57.895 13.08 0.00 34.57 4.00
60 61 2.841160 AAACGAGGCGGCAAACCAC 61.841 57.895 13.08 0.00 34.57 4.16
61 62 2.517402 AAACGAGGCGGCAAACCA 60.517 55.556 13.08 0.00 34.57 3.67
62 63 2.050442 CAAACGAGGCGGCAAACC 60.050 61.111 13.08 0.00 0.00 3.27
63 64 2.729491 GCAAACGAGGCGGCAAAC 60.729 61.111 13.08 0.87 0.00 2.93
72 73 3.645975 AACGCCCACGCAAACGAG 61.646 61.111 0.00 0.00 45.53 4.18
73 74 3.943034 CAACGCCCACGCAAACGA 61.943 61.111 0.00 0.00 45.53 3.85
74 75 3.743091 AACAACGCCCACGCAAACG 62.743 57.895 0.00 0.00 45.53 3.60
75 76 2.103340 AACAACGCCCACGCAAAC 59.897 55.556 0.00 0.00 45.53 2.93
76 77 2.103143 CAACAACGCCCACGCAAA 59.897 55.556 0.00 0.00 45.53 3.68
77 78 2.701780 AACAACAACGCCCACGCAA 61.702 52.632 0.00 0.00 45.53 4.85
78 79 3.134792 AACAACAACGCCCACGCA 61.135 55.556 0.00 0.00 45.53 5.24
79 80 2.653766 CAACAACAACGCCCACGC 60.654 61.111 0.00 0.00 45.53 5.34
81 82 0.526739 GAACCAACAACAACGCCCAC 60.527 55.000 0.00 0.00 0.00 4.61
82 83 1.810532 GAACCAACAACAACGCCCA 59.189 52.632 0.00 0.00 0.00 5.36
83 84 1.298788 CGAACCAACAACAACGCCC 60.299 57.895 0.00 0.00 0.00 6.13
84 85 0.309612 ATCGAACCAACAACAACGCC 59.690 50.000 0.00 0.00 0.00 5.68
85 86 1.662026 GGATCGAACCAACAACAACGC 60.662 52.381 6.88 0.00 0.00 4.84
86 87 1.069500 GGGATCGAACCAACAACAACG 60.069 52.381 14.28 0.00 0.00 4.10
87 88 1.268625 GGGGATCGAACCAACAACAAC 59.731 52.381 14.28 0.00 0.00 3.32
88 89 1.133761 TGGGGATCGAACCAACAACAA 60.134 47.619 14.28 0.00 32.89 2.83
89 90 0.474614 TGGGGATCGAACCAACAACA 59.525 50.000 14.28 1.59 32.89 3.33
90 91 0.879090 GTGGGGATCGAACCAACAAC 59.121 55.000 14.28 2.20 38.73 3.32
91 92 0.250989 GGTGGGGATCGAACCAACAA 60.251 55.000 14.28 0.00 43.97 2.83
92 93 1.377229 GGTGGGGATCGAACCAACA 59.623 57.895 14.28 9.00 43.97 3.33
93 94 0.676782 CTGGTGGGGATCGAACCAAC 60.677 60.000 14.28 13.83 43.21 3.77
94 95 1.682849 CTGGTGGGGATCGAACCAA 59.317 57.895 14.28 0.00 43.21 3.67
95 96 2.966732 GCTGGTGGGGATCGAACCA 61.967 63.158 14.28 9.81 41.66 3.67
96 97 2.124695 GCTGGTGGGGATCGAACC 60.125 66.667 2.47 2.47 34.38 3.62
97 98 2.124695 GGCTGGTGGGGATCGAAC 60.125 66.667 0.00 0.00 0.00 3.95
98 99 2.609299 TGGCTGGTGGGGATCGAA 60.609 61.111 0.00 0.00 0.00 3.71
99 100 3.399181 GTGGCTGGTGGGGATCGA 61.399 66.667 0.00 0.00 0.00 3.59
100 101 2.947938 GATGTGGCTGGTGGGGATCG 62.948 65.000 0.00 0.00 0.00 3.69
101 102 1.152881 GATGTGGCTGGTGGGGATC 60.153 63.158 0.00 0.00 0.00 3.36
102 103 0.327480 TAGATGTGGCTGGTGGGGAT 60.327 55.000 0.00 0.00 0.00 3.85
103 104 0.982852 CTAGATGTGGCTGGTGGGGA 60.983 60.000 0.00 0.00 0.00 4.81
104 105 1.528824 CTAGATGTGGCTGGTGGGG 59.471 63.158 0.00 0.00 0.00 4.96
105 106 1.153086 GCTAGATGTGGCTGGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
106 107 0.254178 AAGCTAGATGTGGCTGGTGG 59.746 55.000 0.18 0.00 40.18 4.61
107 108 2.119801 AAAGCTAGATGTGGCTGGTG 57.880 50.000 0.18 0.00 40.18 4.17
108 109 2.821969 CAAAAAGCTAGATGTGGCTGGT 59.178 45.455 0.18 0.00 40.18 4.00
109 110 2.821969 ACAAAAAGCTAGATGTGGCTGG 59.178 45.455 0.18 0.00 40.18 4.85
110 111 4.510038 AACAAAAAGCTAGATGTGGCTG 57.490 40.909 0.18 0.00 40.18 4.85
111 112 5.302823 AGAAAACAAAAAGCTAGATGTGGCT 59.697 36.000 0.00 0.00 43.62 4.75
112 113 5.403466 CAGAAAACAAAAAGCTAGATGTGGC 59.597 40.000 0.00 0.00 0.00 5.01
113 114 6.507023 ACAGAAAACAAAAAGCTAGATGTGG 58.493 36.000 0.00 0.00 0.00 4.17
114 115 9.683069 AATACAGAAAACAAAAAGCTAGATGTG 57.317 29.630 0.00 0.00 0.00 3.21
115 116 9.683069 CAATACAGAAAACAAAAAGCTAGATGT 57.317 29.630 0.00 0.00 0.00 3.06
116 117 9.132521 CCAATACAGAAAACAAAAAGCTAGATG 57.867 33.333 0.00 0.00 0.00 2.90
117 118 8.306761 CCCAATACAGAAAACAAAAAGCTAGAT 58.693 33.333 0.00 0.00 0.00 1.98
118 119 7.286775 ACCCAATACAGAAAACAAAAAGCTAGA 59.713 33.333 0.00 0.00 0.00 2.43
119 120 7.382218 CACCCAATACAGAAAACAAAAAGCTAG 59.618 37.037 0.00 0.00 0.00 3.42
120 121 7.068839 TCACCCAATACAGAAAACAAAAAGCTA 59.931 33.333 0.00 0.00 0.00 3.32
121 122 6.048509 CACCCAATACAGAAAACAAAAAGCT 58.951 36.000 0.00 0.00 0.00 3.74
122 123 6.019075 GTCACCCAATACAGAAAACAAAAAGC 60.019 38.462 0.00 0.00 0.00 3.51
123 124 7.038659 TGTCACCCAATACAGAAAACAAAAAG 58.961 34.615 0.00 0.00 0.00 2.27
124 125 6.936279 TGTCACCCAATACAGAAAACAAAAA 58.064 32.000 0.00 0.00 0.00 1.94
125 126 6.531503 TGTCACCCAATACAGAAAACAAAA 57.468 33.333 0.00 0.00 0.00 2.44
126 127 6.511416 CATGTCACCCAATACAGAAAACAAA 58.489 36.000 0.00 0.00 0.00 2.83
127 128 5.508825 GCATGTCACCCAATACAGAAAACAA 60.509 40.000 0.00 0.00 0.00 2.83
128 129 4.022416 GCATGTCACCCAATACAGAAAACA 60.022 41.667 0.00 0.00 0.00 2.83
129 130 4.485163 GCATGTCACCCAATACAGAAAAC 58.515 43.478 0.00 0.00 0.00 2.43
130 131 3.190327 CGCATGTCACCCAATACAGAAAA 59.810 43.478 0.00 0.00 0.00 2.29
131 132 2.746904 CGCATGTCACCCAATACAGAAA 59.253 45.455 0.00 0.00 0.00 2.52
132 133 2.355197 CGCATGTCACCCAATACAGAA 58.645 47.619 0.00 0.00 0.00 3.02
133 134 1.406751 CCGCATGTCACCCAATACAGA 60.407 52.381 0.00 0.00 0.00 3.41
134 135 1.016627 CCGCATGTCACCCAATACAG 58.983 55.000 0.00 0.00 0.00 2.74
135 136 0.393673 CCCGCATGTCACCCAATACA 60.394 55.000 0.00 0.00 0.00 2.29
136 137 0.107410 TCCCGCATGTCACCCAATAC 60.107 55.000 0.00 0.00 0.00 1.89
137 138 0.107410 GTCCCGCATGTCACCCAATA 60.107 55.000 0.00 0.00 0.00 1.90
138 139 1.378514 GTCCCGCATGTCACCCAAT 60.379 57.895 0.00 0.00 0.00 3.16
139 140 2.033448 GTCCCGCATGTCACCCAA 59.967 61.111 0.00 0.00 0.00 4.12
140 141 2.927856 AGTCCCGCATGTCACCCA 60.928 61.111 0.00 0.00 0.00 4.51
141 142 2.125106 GAGTCCCGCATGTCACCC 60.125 66.667 0.00 0.00 0.00 4.61
142 143 1.741770 GTGAGTCCCGCATGTCACC 60.742 63.158 0.00 0.00 34.45 4.02
143 144 0.391661 ATGTGAGTCCCGCATGTCAC 60.392 55.000 5.23 5.23 43.79 3.67
144 145 0.108186 GATGTGAGTCCCGCATGTCA 60.108 55.000 0.00 0.00 45.31 3.58
145 146 0.176680 AGATGTGAGTCCCGCATGTC 59.823 55.000 0.00 0.00 45.31 3.06
146 147 0.176680 GAGATGTGAGTCCCGCATGT 59.823 55.000 0.00 0.00 45.31 3.21
147 148 0.176449 TGAGATGTGAGTCCCGCATG 59.824 55.000 0.00 0.00 45.31 4.06
149 150 1.184970 TGTGAGATGTGAGTCCCGCA 61.185 55.000 0.00 0.00 39.93 5.69
150 151 0.459237 CTGTGAGATGTGAGTCCCGC 60.459 60.000 0.00 0.00 0.00 6.13
151 152 1.133982 CTCTGTGAGATGTGAGTCCCG 59.866 57.143 0.00 0.00 0.00 5.14
152 153 1.480137 CCTCTGTGAGATGTGAGTCCC 59.520 57.143 0.00 0.00 0.00 4.46
153 154 2.094286 CACCTCTGTGAGATGTGAGTCC 60.094 54.545 3.65 0.00 45.76 3.85
154 155 2.822561 TCACCTCTGTGAGATGTGAGTC 59.177 50.000 7.40 0.00 46.40 3.36
155 156 2.881734 TCACCTCTGTGAGATGTGAGT 58.118 47.619 7.40 0.00 46.40 3.41
165 166 3.503748 GGGAAGATTTTGTCACCTCTGTG 59.496 47.826 0.00 0.00 44.18 3.66
166 167 3.138283 TGGGAAGATTTTGTCACCTCTGT 59.862 43.478 0.00 0.00 0.00 3.41
167 168 3.503748 GTGGGAAGATTTTGTCACCTCTG 59.496 47.826 0.00 0.00 0.00 3.35
168 169 3.756117 GTGGGAAGATTTTGTCACCTCT 58.244 45.455 0.00 0.00 0.00 3.69
169 170 2.484264 CGTGGGAAGATTTTGTCACCTC 59.516 50.000 0.00 0.00 0.00 3.85
170 171 2.158667 ACGTGGGAAGATTTTGTCACCT 60.159 45.455 0.00 0.00 0.00 4.00
171 172 2.225727 GACGTGGGAAGATTTTGTCACC 59.774 50.000 0.00 0.00 0.00 4.02
172 173 2.875933 TGACGTGGGAAGATTTTGTCAC 59.124 45.455 0.00 0.00 30.61 3.67
173 174 3.201353 TGACGTGGGAAGATTTTGTCA 57.799 42.857 0.00 0.00 32.93 3.58
174 175 3.314080 TGTTGACGTGGGAAGATTTTGTC 59.686 43.478 0.00 0.00 0.00 3.18
175 176 3.283751 TGTTGACGTGGGAAGATTTTGT 58.716 40.909 0.00 0.00 0.00 2.83
176 177 3.980646 TGTTGACGTGGGAAGATTTTG 57.019 42.857 0.00 0.00 0.00 2.44
177 178 3.255642 CCATGTTGACGTGGGAAGATTTT 59.744 43.478 13.46 0.00 46.69 1.82
178 179 2.819608 CCATGTTGACGTGGGAAGATTT 59.180 45.455 13.46 0.00 46.69 2.17
179 180 2.436417 CCATGTTGACGTGGGAAGATT 58.564 47.619 13.46 0.00 46.69 2.40
180 181 2.113860 CCATGTTGACGTGGGAAGAT 57.886 50.000 13.46 0.00 46.69 2.40
181 182 3.623848 CCATGTTGACGTGGGAAGA 57.376 52.632 13.46 0.00 46.69 2.87
205 206 8.488764 CAAAAACGCCCTCGAAATATTTAAAAA 58.511 29.630 0.00 0.00 39.41 1.94
206 207 7.866393 TCAAAAACGCCCTCGAAATATTTAAAA 59.134 29.630 0.00 0.00 39.41 1.52
207 208 7.368833 TCAAAAACGCCCTCGAAATATTTAAA 58.631 30.769 0.00 0.00 39.41 1.52
208 209 6.910995 TCAAAAACGCCCTCGAAATATTTAA 58.089 32.000 0.00 0.00 39.41 1.52
209 210 6.497785 TCAAAAACGCCCTCGAAATATTTA 57.502 33.333 0.00 0.00 39.41 1.40
210 211 5.379732 TCAAAAACGCCCTCGAAATATTT 57.620 34.783 0.00 0.00 39.41 1.40
211 212 5.379732 TTCAAAAACGCCCTCGAAATATT 57.620 34.783 0.00 0.00 39.41 1.28
212 213 5.379732 TTTCAAAAACGCCCTCGAAATAT 57.620 34.783 0.00 0.00 39.41 1.28
213 214 4.832590 TTTCAAAAACGCCCTCGAAATA 57.167 36.364 0.00 0.00 39.41 1.40
214 215 3.719173 TTTCAAAAACGCCCTCGAAAT 57.281 38.095 0.00 0.00 39.41 2.17
215 216 3.505464 TTTTCAAAAACGCCCTCGAAA 57.495 38.095 0.00 0.00 39.41 3.46
216 217 3.505464 TTTTTCAAAAACGCCCTCGAA 57.495 38.095 0.00 0.00 39.41 3.71
243 244 0.107312 CAGAGAGAAGGGCCATGTGG 60.107 60.000 6.18 0.00 38.53 4.17
244 245 0.107312 CCAGAGAGAAGGGCCATGTG 60.107 60.000 6.18 0.00 0.00 3.21
245 246 0.548682 ACCAGAGAGAAGGGCCATGT 60.549 55.000 6.18 0.00 0.00 3.21
246 247 0.179936 GACCAGAGAGAAGGGCCATG 59.820 60.000 6.18 0.00 0.00 3.66
247 248 1.333636 CGACCAGAGAGAAGGGCCAT 61.334 60.000 6.18 0.00 0.00 4.40
248 249 1.984570 CGACCAGAGAGAAGGGCCA 60.985 63.158 6.18 0.00 0.00 5.36
249 250 1.682684 TCGACCAGAGAGAAGGGCC 60.683 63.158 0.00 0.00 0.00 5.80
250 251 4.019983 TCGACCAGAGAGAAGGGC 57.980 61.111 0.00 0.00 0.00 5.19
259 260 3.749064 GTCAGCCGCTCGACCAGA 61.749 66.667 10.25 0.00 0.00 3.86
263 264 2.887568 CATGGTCAGCCGCTCGAC 60.888 66.667 12.09 12.09 37.67 4.20
264 265 4.147449 CCATGGTCAGCCGCTCGA 62.147 66.667 2.57 0.00 37.67 4.04
271 272 4.147587 ATGGGGCCCATGGTCAGC 62.148 66.667 36.92 6.98 43.39 4.26
282 283 4.175337 TGACTAGGCGCATGGGGC 62.175 66.667 26.40 26.40 40.84 5.80
283 284 2.109799 CTGACTAGGCGCATGGGG 59.890 66.667 10.83 0.00 0.00 4.96
284 285 2.590007 GCTGACTAGGCGCATGGG 60.590 66.667 10.83 5.19 0.00 4.00
285 286 2.176273 GTGCTGACTAGGCGCATGG 61.176 63.158 16.28 6.86 39.63 3.66
286 287 1.448365 TGTGCTGACTAGGCGCATG 60.448 57.895 16.28 0.00 43.80 4.06
287 288 2.981302 TGTGCTGACTAGGCGCAT 59.019 55.556 16.28 3.98 43.80 4.73
289 290 0.103208 AGTATGTGCTGACTAGGCGC 59.897 55.000 0.00 0.00 40.19 6.53
290 291 1.269309 GGAGTATGTGCTGACTAGGCG 60.269 57.143 0.00 0.00 0.00 5.52
291 292 1.269309 CGGAGTATGTGCTGACTAGGC 60.269 57.143 0.00 0.00 0.00 3.93
292 293 2.025155 ACGGAGTATGTGCTGACTAGG 58.975 52.381 0.00 0.00 41.94 3.02
305 306 1.298602 TCGCGCTTATGTACGGAGTA 58.701 50.000 5.56 0.00 45.11 2.59
307 308 2.606717 TATCGCGCTTATGTACGGAG 57.393 50.000 5.56 0.00 0.00 4.63
308 309 2.919387 GCTTATCGCGCTTATGTACGGA 60.919 50.000 5.56 0.00 0.00 4.69
309 310 1.385743 GCTTATCGCGCTTATGTACGG 59.614 52.381 5.56 0.00 0.00 4.02
310 311 2.048498 TGCTTATCGCGCTTATGTACG 58.952 47.619 5.56 0.00 43.27 3.67
311 312 3.419815 GTGCTTATCGCGCTTATGTAC 57.580 47.619 5.56 5.81 45.56 2.90
320 321 1.656429 GCAAATACGGTGCTTATCGCG 60.656 52.381 0.00 0.00 43.27 5.87
321 322 1.329292 TGCAAATACGGTGCTTATCGC 59.671 47.619 0.00 0.00 42.69 4.58
322 323 2.596575 CGTGCAAATACGGTGCTTATCG 60.597 50.000 0.00 0.00 42.69 2.92
323 324 2.969055 CGTGCAAATACGGTGCTTATC 58.031 47.619 0.00 0.00 42.69 1.75
324 325 3.933955 TAACGTGCAAATACGGTGCTTAT 59.066 39.130 0.00 0.00 44.79 1.73
325 326 3.324117 TAACGTGCAAATACGGTGCTTA 58.676 40.909 0.00 0.00 44.79 3.09
326 327 2.144730 TAACGTGCAAATACGGTGCTT 58.855 42.857 0.00 0.00 44.79 3.91
327 328 1.798283 TAACGTGCAAATACGGTGCT 58.202 45.000 0.00 0.00 44.79 4.40
328 329 2.598000 TTAACGTGCAAATACGGTGC 57.402 45.000 0.00 0.00 44.79 5.01
329 330 4.073169 ACATTAACGTGCAAATACGGTG 57.927 40.909 0.00 0.00 44.79 4.94
333 334 7.617533 AAACTTGACATTAACGTGCAAATAC 57.382 32.000 0.00 0.00 0.00 1.89
334 335 8.535592 CAAAAACTTGACATTAACGTGCAAATA 58.464 29.630 0.00 0.00 0.00 1.40
335 336 7.397970 CAAAAACTTGACATTAACGTGCAAAT 58.602 30.769 0.00 0.00 0.00 2.32
336 337 6.670927 GCAAAAACTTGACATTAACGTGCAAA 60.671 34.615 0.00 0.00 0.00 3.68
337 338 5.220303 GCAAAAACTTGACATTAACGTGCAA 60.220 36.000 0.00 0.00 0.00 4.08
338 339 4.266502 GCAAAAACTTGACATTAACGTGCA 59.733 37.500 0.00 0.00 0.00 4.57
339 340 4.266502 TGCAAAAACTTGACATTAACGTGC 59.733 37.500 0.00 0.00 0.00 5.34
340 341 5.276161 GGTGCAAAAACTTGACATTAACGTG 60.276 40.000 0.00 0.00 0.00 4.49
341 342 4.801516 GGTGCAAAAACTTGACATTAACGT 59.198 37.500 0.00 0.00 0.00 3.99
342 343 4.800993 TGGTGCAAAAACTTGACATTAACG 59.199 37.500 0.00 0.00 0.00 3.18
343 344 5.810074 AGTGGTGCAAAAACTTGACATTAAC 59.190 36.000 0.00 0.00 0.00 2.01
344 345 5.971763 AGTGGTGCAAAAACTTGACATTAA 58.028 33.333 0.00 0.00 0.00 1.40
345 346 5.590530 AGTGGTGCAAAAACTTGACATTA 57.409 34.783 0.00 0.00 0.00 1.90
346 347 4.470334 AGTGGTGCAAAAACTTGACATT 57.530 36.364 0.00 0.00 0.00 2.71
347 348 4.081752 TGAAGTGGTGCAAAAACTTGACAT 60.082 37.500 13.05 0.00 34.37 3.06
348 349 3.256879 TGAAGTGGTGCAAAAACTTGACA 59.743 39.130 13.05 5.17 34.37 3.58
349 350 3.843999 TGAAGTGGTGCAAAAACTTGAC 58.156 40.909 13.05 3.07 34.37 3.18
350 351 4.527509 TTGAAGTGGTGCAAAAACTTGA 57.472 36.364 13.05 4.07 34.37 3.02
351 352 4.630940 ACATTGAAGTGGTGCAAAAACTTG 59.369 37.500 13.05 4.33 34.37 3.16
352 353 4.831107 ACATTGAAGTGGTGCAAAAACTT 58.169 34.783 9.09 9.09 36.87 2.66
353 354 4.470334 ACATTGAAGTGGTGCAAAAACT 57.530 36.364 0.00 0.00 0.00 2.66
354 355 5.005299 GTGTACATTGAAGTGGTGCAAAAAC 59.995 40.000 0.00 0.00 0.00 2.43
355 356 5.105752 GTGTACATTGAAGTGGTGCAAAAA 58.894 37.500 0.00 0.00 0.00 1.94
356 357 4.440802 GGTGTACATTGAAGTGGTGCAAAA 60.441 41.667 0.00 0.00 0.00 2.44
357 358 3.067461 GGTGTACATTGAAGTGGTGCAAA 59.933 43.478 0.00 0.00 0.00 3.68
358 359 2.621055 GGTGTACATTGAAGTGGTGCAA 59.379 45.455 0.00 0.00 0.00 4.08
359 360 2.226330 GGTGTACATTGAAGTGGTGCA 58.774 47.619 0.00 0.00 0.00 4.57
360 361 2.031157 GTGGTGTACATTGAAGTGGTGC 60.031 50.000 0.00 0.00 0.00 5.01
361 362 3.210227 TGTGGTGTACATTGAAGTGGTG 58.790 45.455 0.00 0.00 33.42 4.17
362 363 3.569194 TGTGGTGTACATTGAAGTGGT 57.431 42.857 0.00 0.00 33.42 4.16
363 364 3.882888 AGTTGTGGTGTACATTGAAGTGG 59.117 43.478 0.00 0.00 39.48 4.00
364 365 5.296780 AGAAGTTGTGGTGTACATTGAAGTG 59.703 40.000 0.00 0.00 39.48 3.16
365 366 5.437060 AGAAGTTGTGGTGTACATTGAAGT 58.563 37.500 0.00 0.00 39.48 3.01
366 367 6.347725 GCTAGAAGTTGTGGTGTACATTGAAG 60.348 42.308 0.00 0.00 39.48 3.02
367 368 5.468746 GCTAGAAGTTGTGGTGTACATTGAA 59.531 40.000 0.00 0.00 39.48 2.69
368 369 4.994852 GCTAGAAGTTGTGGTGTACATTGA 59.005 41.667 0.00 0.00 39.48 2.57
369 370 4.754618 TGCTAGAAGTTGTGGTGTACATTG 59.245 41.667 0.00 0.00 39.48 2.82
370 371 4.968259 TGCTAGAAGTTGTGGTGTACATT 58.032 39.130 0.00 0.00 39.48 2.71
371 372 4.617253 TGCTAGAAGTTGTGGTGTACAT 57.383 40.909 0.00 0.00 39.48 2.29
372 373 4.039852 TGATGCTAGAAGTTGTGGTGTACA 59.960 41.667 0.00 0.00 37.56 2.90
373 374 4.566004 TGATGCTAGAAGTTGTGGTGTAC 58.434 43.478 0.00 0.00 0.00 2.90
374 375 4.882842 TGATGCTAGAAGTTGTGGTGTA 57.117 40.909 0.00 0.00 0.00 2.90
375 376 3.769739 TGATGCTAGAAGTTGTGGTGT 57.230 42.857 0.00 0.00 0.00 4.16
376 377 4.516698 ACTTTGATGCTAGAAGTTGTGGTG 59.483 41.667 0.00 0.00 29.81 4.17
377 378 4.516698 CACTTTGATGCTAGAAGTTGTGGT 59.483 41.667 0.00 0.00 31.63 4.16
378 379 4.756642 TCACTTTGATGCTAGAAGTTGTGG 59.243 41.667 0.00 0.00 31.63 4.17
379 380 5.334414 GGTCACTTTGATGCTAGAAGTTGTG 60.334 44.000 0.00 0.00 31.63 3.33
380 381 4.757149 GGTCACTTTGATGCTAGAAGTTGT 59.243 41.667 0.00 0.00 31.63 3.32
381 382 4.756642 TGGTCACTTTGATGCTAGAAGTTG 59.243 41.667 0.00 0.00 31.63 3.16
382 383 4.973168 TGGTCACTTTGATGCTAGAAGTT 58.027 39.130 0.00 0.00 31.63 2.66
383 384 4.623932 TGGTCACTTTGATGCTAGAAGT 57.376 40.909 0.00 0.00 34.14 3.01
384 385 6.506500 AAATGGTCACTTTGATGCTAGAAG 57.493 37.500 0.00 0.00 0.00 2.85
385 386 6.092122 CGTAAATGGTCACTTTGATGCTAGAA 59.908 38.462 0.00 0.00 0.00 2.10
386 387 5.580691 CGTAAATGGTCACTTTGATGCTAGA 59.419 40.000 0.00 0.00 0.00 2.43
387 388 5.727791 GCGTAAATGGTCACTTTGATGCTAG 60.728 44.000 0.00 0.00 28.97 3.42
388 389 4.094294 GCGTAAATGGTCACTTTGATGCTA 59.906 41.667 0.00 0.00 28.97 3.49
389 390 3.119849 GCGTAAATGGTCACTTTGATGCT 60.120 43.478 0.00 0.00 28.97 3.79
390 391 3.171277 GCGTAAATGGTCACTTTGATGC 58.829 45.455 0.00 0.00 0.00 3.91
391 392 3.190327 TGGCGTAAATGGTCACTTTGATG 59.810 43.478 0.00 0.00 0.00 3.07
392 393 3.417101 TGGCGTAAATGGTCACTTTGAT 58.583 40.909 0.00 0.00 0.00 2.57
393 394 2.852449 TGGCGTAAATGGTCACTTTGA 58.148 42.857 0.00 0.00 0.00 2.69
394 395 3.004315 ACTTGGCGTAAATGGTCACTTTG 59.996 43.478 0.00 0.00 0.00 2.77
395 396 3.219281 ACTTGGCGTAAATGGTCACTTT 58.781 40.909 0.00 0.00 0.00 2.66
396 397 2.858745 ACTTGGCGTAAATGGTCACTT 58.141 42.857 0.00 0.00 0.00 3.16
397 398 2.561478 ACTTGGCGTAAATGGTCACT 57.439 45.000 0.00 0.00 0.00 3.41
398 399 4.957759 ATAACTTGGCGTAAATGGTCAC 57.042 40.909 0.00 0.00 0.00 3.67
399 400 4.573201 GCTATAACTTGGCGTAAATGGTCA 59.427 41.667 0.00 0.00 0.00 4.02
400 401 4.573201 TGCTATAACTTGGCGTAAATGGTC 59.427 41.667 0.00 0.00 0.00 4.02
401 402 4.334481 GTGCTATAACTTGGCGTAAATGGT 59.666 41.667 0.00 0.00 0.00 3.55
402 403 4.261031 GGTGCTATAACTTGGCGTAAATGG 60.261 45.833 0.00 0.00 0.00 3.16
403 404 4.334203 TGGTGCTATAACTTGGCGTAAATG 59.666 41.667 0.00 0.00 0.00 2.32
404 405 4.519213 TGGTGCTATAACTTGGCGTAAAT 58.481 39.130 0.00 0.00 0.00 1.40
405 406 3.940319 TGGTGCTATAACTTGGCGTAAA 58.060 40.909 0.00 0.00 0.00 2.01
406 407 3.613494 TGGTGCTATAACTTGGCGTAA 57.387 42.857 0.00 0.00 0.00 3.18
407 408 3.133183 TGATGGTGCTATAACTTGGCGTA 59.867 43.478 0.00 0.00 0.00 4.42
408 409 2.093181 TGATGGTGCTATAACTTGGCGT 60.093 45.455 0.00 0.00 0.00 5.68
409 410 2.545526 CTGATGGTGCTATAACTTGGCG 59.454 50.000 0.00 0.00 0.00 5.69
410 411 3.313526 CACTGATGGTGCTATAACTTGGC 59.686 47.826 0.00 0.00 39.22 4.52
423 424 7.721399 AGAAAAAGAGTCAATTACACTGATGGT 59.279 33.333 0.00 0.00 0.00 3.55
424 425 8.103948 AGAAAAAGAGTCAATTACACTGATGG 57.896 34.615 0.00 0.00 0.00 3.51
427 428 9.607988 TGTTAGAAAAAGAGTCAATTACACTGA 57.392 29.630 0.00 0.00 0.00 3.41
428 429 9.869844 CTGTTAGAAAAAGAGTCAATTACACTG 57.130 33.333 0.00 0.00 0.00 3.66
429 430 9.832445 TCTGTTAGAAAAAGAGTCAATTACACT 57.168 29.630 0.00 0.00 0.00 3.55
430 431 9.865484 GTCTGTTAGAAAAAGAGTCAATTACAC 57.135 33.333 0.00 0.00 0.00 2.90
431 432 9.607988 TGTCTGTTAGAAAAAGAGTCAATTACA 57.392 29.630 0.00 0.00 0.00 2.41
434 435 8.964476 TCTGTCTGTTAGAAAAAGAGTCAATT 57.036 30.769 0.00 0.00 0.00 2.32
435 436 8.964476 TTCTGTCTGTTAGAAAAAGAGTCAAT 57.036 30.769 0.00 0.00 31.62 2.57
436 437 8.786826 TTTCTGTCTGTTAGAAAAAGAGTCAA 57.213 30.769 0.00 0.00 40.21 3.18
437 438 8.786826 TTTTCTGTCTGTTAGAAAAAGAGTCA 57.213 30.769 14.60 0.00 45.80 3.41
447 448 9.257651 GCTTTTAGTAGTTTTCTGTCTGTTAGA 57.742 33.333 0.00 0.00 0.00 2.10
450 451 7.553044 AGTGCTTTTAGTAGTTTTCTGTCTGTT 59.447 33.333 0.00 0.00 0.00 3.16
497 500 8.827677 CAGTTAGGTGAAGGTGCTTATAATAAC 58.172 37.037 0.00 0.00 0.00 1.89
515 518 5.839606 ACTCTCCTTGTAACTTCAGTTAGGT 59.160 40.000 0.00 0.00 40.74 3.08
571 585 1.227527 CGCATGGATCACGGGCTAA 60.228 57.895 0.00 0.00 0.00 3.09
573 587 2.329539 ATTCGCATGGATCACGGGCT 62.330 55.000 0.00 0.00 0.00 5.19
574 588 1.893808 ATTCGCATGGATCACGGGC 60.894 57.895 0.00 0.00 0.00 6.13
622 636 2.943993 GCTATACAGCTACTAACCGGC 58.056 52.381 0.00 0.00 44.93 6.13
690 712 1.851021 CGCCGGACTTGTTCATTGCA 61.851 55.000 5.05 0.00 0.00 4.08
717 744 3.435186 GCTTCCGCCTTGCTGTCC 61.435 66.667 0.00 0.00 0.00 4.02
744 771 0.109272 TCACTGATTGCTCGTCGTCC 60.109 55.000 0.00 0.00 0.00 4.79
752 779 4.858850 TGGGATTTACATCACTGATTGCT 58.141 39.130 0.00 0.00 33.38 3.91
764 795 4.258543 GACGGATCAAGTTGGGATTTACA 58.741 43.478 2.34 0.00 0.00 2.41
869 912 0.599204 ACGACGAAGGCAATGACGTT 60.599 50.000 0.00 0.00 39.04 3.99
929 980 0.818040 GTGTGTTTTCTCCGGCTGGT 60.818 55.000 12.43 0.00 36.30 4.00
946 997 1.010462 TCGTGTCGTGTGTCTCGTG 60.010 57.895 0.00 0.00 0.00 4.35
947 998 1.010350 GTCGTGTCGTGTGTCTCGT 60.010 57.895 0.00 0.00 0.00 4.18
948 999 1.724929 GGTCGTGTCGTGTGTCTCG 60.725 63.158 0.00 0.00 0.00 4.04
949 1000 0.039437 ATGGTCGTGTCGTGTGTCTC 60.039 55.000 0.00 0.00 0.00 3.36
951 1002 0.039437 AGATGGTCGTGTCGTGTGTC 60.039 55.000 0.00 0.00 0.00 3.67
952 1003 1.241165 TAGATGGTCGTGTCGTGTGT 58.759 50.000 0.00 0.00 0.00 3.72
953 1004 2.451132 GATAGATGGTCGTGTCGTGTG 58.549 52.381 0.00 0.00 0.00 3.82
960 1017 4.499865 CCACTAACTGGATAGATGGTCGTG 60.500 50.000 0.00 0.00 43.95 4.35
1020 1092 2.504244 GCGACCAAGACGACGAGG 60.504 66.667 0.00 0.08 0.00 4.63
1073 1145 0.597568 CCAGCCGTTGAAGCAAATGA 59.402 50.000 0.00 0.00 0.00 2.57
1176 1278 1.065491 CAGCTGGTGGTGTAATAGCCA 60.065 52.381 5.57 0.00 36.97 4.75
1211 1328 4.907034 CGGCCTCCGTGACGATCG 62.907 72.222 14.88 14.88 42.73 3.69
1247 1926 0.923358 AATGCCGGGGTTCTTATCCA 59.077 50.000 2.18 0.00 0.00 3.41
1248 1927 1.318576 CAATGCCGGGGTTCTTATCC 58.681 55.000 2.18 0.00 0.00 2.59
1249 1928 1.318576 CCAATGCCGGGGTTCTTATC 58.681 55.000 2.18 0.00 0.00 1.75
1250 1929 0.755327 GCCAATGCCGGGGTTCTTAT 60.755 55.000 2.18 0.00 0.00 1.73
1251 1930 1.379309 GCCAATGCCGGGGTTCTTA 60.379 57.895 2.18 0.00 0.00 2.10
1252 1931 2.679996 GCCAATGCCGGGGTTCTT 60.680 61.111 2.18 0.00 0.00 2.52
1341 2026 5.147162 GTTCTTGTATTTTGGAACAGAGCG 58.853 41.667 0.00 0.00 42.39 5.03
1345 2030 6.572254 CGTAACGTTCTTGTATTTTGGAACAG 59.428 38.462 2.82 0.00 42.39 3.16
1346 2031 6.036953 ACGTAACGTTCTTGTATTTTGGAACA 59.963 34.615 2.82 0.00 36.35 3.18
1363 2056 6.907212 CGTCCTATAATACAAGAACGTAACGT 59.093 38.462 0.00 0.00 43.97 3.99
1365 2058 7.417612 TCCGTCCTATAATACAAGAACGTAAC 58.582 38.462 0.00 0.00 0.00 2.50
1366 2059 7.255242 CCTCCGTCCTATAATACAAGAACGTAA 60.255 40.741 0.00 0.00 0.00 3.18
1367 2060 6.205464 CCTCCGTCCTATAATACAAGAACGTA 59.795 42.308 0.00 0.00 0.00 3.57
1368 2061 5.009410 CCTCCGTCCTATAATACAAGAACGT 59.991 44.000 0.00 0.00 0.00 3.99
1369 2062 5.458891 CCTCCGTCCTATAATACAAGAACG 58.541 45.833 0.00 0.00 0.00 3.95
1370 2063 5.537674 TCCCTCCGTCCTATAATACAAGAAC 59.462 44.000 0.00 0.00 0.00 3.01
1372 2065 5.163012 ACTCCCTCCGTCCTATAATACAAGA 60.163 44.000 0.00 0.00 0.00 3.02
1373 2066 5.047943 CACTCCCTCCGTCCTATAATACAAG 60.048 48.000 0.00 0.00 0.00 3.16
1374 2067 4.831155 CACTCCCTCCGTCCTATAATACAA 59.169 45.833 0.00 0.00 0.00 2.41
1376 2093 3.762823 CCACTCCCTCCGTCCTATAATAC 59.237 52.174 0.00 0.00 0.00 1.89
1381 2098 1.457831 GCCACTCCCTCCGTCCTAT 60.458 63.158 0.00 0.00 0.00 2.57
1383 2100 2.164332 TAAGCCACTCCCTCCGTCCT 62.164 60.000 0.00 0.00 0.00 3.85
1385 2102 0.389757 GATAAGCCACTCCCTCCGTC 59.610 60.000 0.00 0.00 0.00 4.79
1393 2110 5.415701 TGGAAGAAATGTTGATAAGCCACTC 59.584 40.000 0.00 0.00 0.00 3.51
1397 2114 4.394920 TCGTGGAAGAAATGTTGATAAGCC 59.605 41.667 0.00 0.00 0.00 4.35
1398 2115 5.122396 AGTCGTGGAAGAAATGTTGATAAGC 59.878 40.000 0.00 0.00 0.00 3.09
1399 2116 6.537566 CAGTCGTGGAAGAAATGTTGATAAG 58.462 40.000 0.00 0.00 0.00 1.73
1401 2118 4.391830 GCAGTCGTGGAAGAAATGTTGATA 59.608 41.667 0.00 0.00 0.00 2.15
1404 2121 2.290367 TGCAGTCGTGGAAGAAATGTTG 59.710 45.455 0.00 0.00 0.00 3.33
1405 2122 2.571212 TGCAGTCGTGGAAGAAATGTT 58.429 42.857 0.00 0.00 0.00 2.71
1406 2123 2.254546 TGCAGTCGTGGAAGAAATGT 57.745 45.000 0.00 0.00 0.00 2.71
1407 2124 3.058016 ACAATGCAGTCGTGGAAGAAATG 60.058 43.478 0.00 0.00 0.00 2.32
1408 2125 3.149196 ACAATGCAGTCGTGGAAGAAAT 58.851 40.909 0.00 0.00 0.00 2.17
1409 2126 2.548057 GACAATGCAGTCGTGGAAGAAA 59.452 45.455 0.00 0.00 0.00 2.52
1410 2127 2.143122 GACAATGCAGTCGTGGAAGAA 58.857 47.619 0.00 0.00 0.00 2.52
1411 2128 1.069978 TGACAATGCAGTCGTGGAAGA 59.930 47.619 0.00 0.00 41.41 2.87
1412 2129 1.195448 GTGACAATGCAGTCGTGGAAG 59.805 52.381 0.00 0.00 41.41 3.46
1413 2130 1.225855 GTGACAATGCAGTCGTGGAA 58.774 50.000 0.00 0.00 41.41 3.53
1414 2131 0.943835 CGTGACAATGCAGTCGTGGA 60.944 55.000 0.00 0.00 41.41 4.02
1415 2132 1.221466 ACGTGACAATGCAGTCGTGG 61.221 55.000 0.00 0.00 41.41 4.94
1416 2133 0.581529 AACGTGACAATGCAGTCGTG 59.418 50.000 0.00 0.00 41.41 4.35
1417 2134 1.260561 GAAACGTGACAATGCAGTCGT 59.739 47.619 0.00 0.00 41.41 4.34
1418 2135 1.260297 TGAAACGTGACAATGCAGTCG 59.740 47.619 0.00 0.00 41.41 4.18
1419 2136 2.031560 TGTGAAACGTGACAATGCAGTC 59.968 45.455 0.00 0.00 42.39 3.51
1432 2149 5.509771 TGAACATGTTGATCTTGTGAAACG 58.490 37.500 17.58 0.00 42.39 3.60
1433 2150 7.935338 AATGAACATGTTGATCTTGTGAAAC 57.065 32.000 17.58 0.00 35.17 2.78
1460 2201 2.828868 GCATCGCACCCCTGGATA 59.171 61.111 0.00 0.00 0.00 2.59
1461 2202 4.552365 CGCATCGCACCCCTGGAT 62.552 66.667 0.00 0.00 0.00 3.41
1478 2219 1.080705 CGTGTTGAGGAGGACGGAC 60.081 63.158 0.00 0.00 0.00 4.79
1514 2255 2.283529 GCCTTCCCTCTCCGTGTCA 61.284 63.158 0.00 0.00 0.00 3.58
1544 2285 1.600916 GAACCCTCGCAGGCTGTTT 60.601 57.895 17.16 0.14 32.73 2.83
1572 2313 1.320344 ATCGCTGTCTTGGCCTCGTA 61.320 55.000 3.32 0.00 0.00 3.43
1607 2348 0.855349 CCGCGCATGAGACTGTATTC 59.145 55.000 8.75 0.00 0.00 1.75
1807 2679 2.036731 TGACCATCTCGACGGGGT 59.963 61.111 0.00 0.00 36.05 4.95
1813 2685 1.377366 GGAGAGCGTGACCATCTCGA 61.377 60.000 4.60 0.00 40.32 4.04
1859 2731 1.538047 GGCTGGAGAAGAACATGCAA 58.462 50.000 0.00 0.00 0.00 4.08
1929 2801 1.159098 TTGGTGTTACCGTTGTCGCC 61.159 55.000 0.00 0.00 42.58 5.54
1940 2812 2.937799 GTCTTGGTTCACGTTGGTGTTA 59.062 45.455 0.00 0.00 44.68 2.41
1962 2834 1.548719 CAGGACGTTGGAGGTCACATA 59.451 52.381 0.00 0.00 34.90 2.29
2057 2929 1.325355 TCACCTCCGTTCTCGTTTCT 58.675 50.000 0.00 0.00 35.01 2.52
2151 3036 3.349006 CACGCTTTGCTGGTCGCT 61.349 61.111 0.00 0.00 40.11 4.93
2202 3087 4.736473 ACTGGCCAACCTTATTTGTAGTT 58.264 39.130 7.01 0.00 36.63 2.24
2203 3088 4.382386 ACTGGCCAACCTTATTTGTAGT 57.618 40.909 7.01 0.00 36.63 2.73
2204 3089 5.497474 ACTACTGGCCAACCTTATTTGTAG 58.503 41.667 17.04 17.04 36.63 2.74
2205 3090 5.508280 ACTACTGGCCAACCTTATTTGTA 57.492 39.130 7.01 0.82 36.63 2.41
2206 3091 4.382386 ACTACTGGCCAACCTTATTTGT 57.618 40.909 7.01 0.00 36.63 2.83
2207 3092 6.680378 GCATTACTACTGGCCAACCTTATTTG 60.680 42.308 7.01 0.00 36.63 2.32
2208 3093 5.359860 GCATTACTACTGGCCAACCTTATTT 59.640 40.000 7.01 0.00 36.63 1.40
2209 3094 4.887655 GCATTACTACTGGCCAACCTTATT 59.112 41.667 7.01 0.00 36.63 1.40
2210 3095 4.461198 GCATTACTACTGGCCAACCTTAT 58.539 43.478 7.01 0.00 36.63 1.73
2214 3099 1.014352 CGCATTACTACTGGCCAACC 58.986 55.000 7.01 0.00 0.00 3.77
2329 3220 0.177836 TCACACACACACACAGGGAG 59.822 55.000 0.00 0.00 0.00 4.30
2331 3222 0.177836 TCTCACACACACACACAGGG 59.822 55.000 0.00 0.00 0.00 4.45
2332 3223 1.136891 TCTCTCACACACACACACAGG 59.863 52.381 0.00 0.00 0.00 4.00
2333 3224 2.099756 TCTCTCTCACACACACACACAG 59.900 50.000 0.00 0.00 0.00 3.66
2347 3238 4.160439 TCACTCACTCTCTCTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
2348 3239 4.096681 TCACTCACTCTCTCTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
2349 3240 4.081420 ACTCACTCACTCTCTCTCTCTCTC 60.081 50.000 0.00 0.00 0.00 3.20
2350 3241 3.840666 ACTCACTCACTCTCTCTCTCTCT 59.159 47.826 0.00 0.00 0.00 3.10
2351 3242 3.935203 CACTCACTCACTCTCTCTCTCTC 59.065 52.174 0.00 0.00 0.00 3.20
2352 3243 3.582647 TCACTCACTCACTCTCTCTCTCT 59.417 47.826 0.00 0.00 0.00 3.10
2353 3244 3.935203 CTCACTCACTCACTCTCTCTCTC 59.065 52.174 0.00 0.00 0.00 3.20
2354 3245 3.327757 ACTCACTCACTCACTCTCTCTCT 59.672 47.826 0.00 0.00 0.00 3.10
2355 3246 3.436704 CACTCACTCACTCACTCTCTCTC 59.563 52.174 0.00 0.00 0.00 3.20
2356 3247 3.181445 ACACTCACTCACTCACTCTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
2357 3248 3.058293 CACACTCACTCACTCACTCTCTC 60.058 52.174 0.00 0.00 0.00 3.20
2358 3249 2.884012 CACACTCACTCACTCACTCTCT 59.116 50.000 0.00 0.00 0.00 3.10
2359 3250 2.621055 ACACACTCACTCACTCACTCTC 59.379 50.000 0.00 0.00 0.00 3.20
2360 3251 2.360483 CACACACTCACTCACTCACTCT 59.640 50.000 0.00 0.00 0.00 3.24
2361 3252 2.099921 ACACACACTCACTCACTCACTC 59.900 50.000 0.00 0.00 0.00 3.51
2362 3253 2.103373 ACACACACTCACTCACTCACT 58.897 47.619 0.00 0.00 0.00 3.41
2363 3254 2.196749 CACACACACTCACTCACTCAC 58.803 52.381 0.00 0.00 0.00 3.51
2364 3255 1.824852 ACACACACACTCACTCACTCA 59.175 47.619 0.00 0.00 0.00 3.41
2365 3256 2.196749 CACACACACACTCACTCACTC 58.803 52.381 0.00 0.00 0.00 3.51
2366 3257 1.550524 ACACACACACACTCACTCACT 59.449 47.619 0.00 0.00 0.00 3.41
2367 3258 1.660607 CACACACACACACTCACTCAC 59.339 52.381 0.00 0.00 0.00 3.51
2368 3259 1.275010 ACACACACACACACTCACTCA 59.725 47.619 0.00 0.00 0.00 3.41
2369 3260 1.660607 CACACACACACACACTCACTC 59.339 52.381 0.00 0.00 0.00 3.51
2370 3261 1.001974 ACACACACACACACACTCACT 59.998 47.619 0.00 0.00 0.00 3.41
2371 3262 1.128507 CACACACACACACACACTCAC 59.871 52.381 0.00 0.00 0.00 3.51
2372 3263 1.270571 ACACACACACACACACACTCA 60.271 47.619 0.00 0.00 0.00 3.41
2373 3264 1.128507 CACACACACACACACACACTC 59.871 52.381 0.00 0.00 0.00 3.51
2374 3265 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
2451 3397 6.137104 AGTCCTAGGTGAACTGAAGTACTA 57.863 41.667 9.08 0.00 0.00 1.82
2470 3416 5.379827 CCGAAACAACGAGAAAATTAGTCC 58.620 41.667 0.00 0.00 35.09 3.85
2476 3587 1.069500 CGCCCGAAACAACGAGAAAAT 60.069 47.619 0.00 0.00 35.09 1.82
2483 3594 2.381665 TTTGCTCGCCCGAAACAACG 62.382 55.000 5.59 0.00 0.00 4.10
2492 3603 0.317854 GTGTCTGTTTTTGCTCGCCC 60.318 55.000 0.00 0.00 0.00 6.13
2498 3609 2.682856 TCCTGTCAGTGTCTGTTTTTGC 59.317 45.455 0.00 0.00 32.61 3.68
2499 3610 4.191544 TCTCCTGTCAGTGTCTGTTTTTG 58.808 43.478 0.00 0.00 32.61 2.44
2558 3696 6.714810 ACTGCAACTAGTGGTTCAATCATTTA 59.285 34.615 0.00 0.00 35.74 1.40
2573 3712 3.058293 TGGCGAAAAATGACTGCAACTAG 60.058 43.478 0.00 0.00 0.00 2.57
2774 3920 6.639686 TCAAAGTCAGTACGTCATGAACTTAC 59.360 38.462 0.00 0.00 33.82 2.34
2781 3927 7.328493 TGTTTAGATCAAAGTCAGTACGTCATG 59.672 37.037 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.