Multiple sequence alignment - TraesCS3B01G339200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G339200 chr3B 100.000 7881 0 0 1 7881 545194697 545202577 0.000000e+00 14554.0
1 TraesCS3B01G339200 chr3B 88.535 785 54 26 4376 5140 332940695 332939927 0.000000e+00 918.0
2 TraesCS3B01G339200 chr3D 89.756 3612 252 61 11 3564 418775811 418779362 0.000000e+00 4512.0
3 TraesCS3B01G339200 chr3D 91.332 1569 81 18 5674 7225 418781132 418782662 0.000000e+00 2093.0
4 TraesCS3B01G339200 chr3D 96.254 614 23 0 7268 7881 418782662 418783275 0.000000e+00 1007.0
5 TraesCS3B01G339200 chr3D 95.882 340 12 1 4036 4375 418780800 418781137 4.160000e-152 549.0
6 TraesCS3B01G339200 chr3D 88.095 420 33 11 3563 3978 418779434 418779840 4.280000e-132 483.0
7 TraesCS3B01G339200 chr3D 94.845 194 9 1 5482 5675 346722748 346722940 1.290000e-77 302.0
8 TraesCS3B01G339200 chr3D 93.103 58 4 0 3977 4034 418780709 418780766 1.410000e-12 86.1
9 TraesCS3B01G339200 chr3A 93.080 2818 146 24 775 3563 532325942 532323145 0.000000e+00 4078.0
10 TraesCS3B01G339200 chr3A 91.066 2261 112 26 5674 7881 532321900 532319677 0.000000e+00 2974.0
11 TraesCS3B01G339200 chr3A 91.304 713 43 10 4376 5081 29431001 29431701 0.000000e+00 955.0
12 TraesCS3B01G339200 chr3A 95.000 340 10 2 4036 4375 532322227 532321895 1.950000e-145 527.0
13 TraesCS3B01G339200 chr3A 89.474 399 34 6 3582 3978 532322753 532322361 1.530000e-136 497.0
14 TraesCS3B01G339200 chr3A 80.000 200 13 9 571 767 532328774 532328599 1.070000e-23 122.0
15 TraesCS3B01G339200 chr7A 86.651 1251 111 20 4375 5596 709368498 709369721 0.000000e+00 1334.0
16 TraesCS3B01G339200 chr2A 91.983 711 37 8 4376 5081 148596420 148595725 0.000000e+00 979.0
17 TraesCS3B01G339200 chr4A 90.095 737 47 15 4417 5142 200095006 200094285 0.000000e+00 933.0
18 TraesCS3B01G339200 chr4A 91.817 611 37 8 4375 4981 340501782 340501181 0.000000e+00 839.0
19 TraesCS3B01G339200 chr7D 86.295 861 87 16 4831 5674 616480391 616481237 0.000000e+00 907.0
20 TraesCS3B01G339200 chr7D 91.941 273 21 1 5284 5556 110935641 110935912 1.600000e-101 381.0
21 TraesCS3B01G339200 chr6A 93.092 608 26 7 4376 4978 268985570 268986166 0.000000e+00 876.0
22 TraesCS3B01G339200 chr6A 95.628 183 8 0 5492 5674 268986700 268986882 2.150000e-75 294.0
23 TraesCS3B01G339200 chr2B 92.233 618 32 7 4376 4988 352284206 352284812 0.000000e+00 861.0
24 TraesCS3B01G339200 chr2B 95.122 123 4 1 4376 4498 309495850 309495730 8.070000e-45 193.0
25 TraesCS3B01G339200 chr2B 90.647 139 7 3 4376 4514 352285453 352285585 6.280000e-41 180.0
26 TraesCS3B01G339200 chr2D 91.734 617 34 7 4376 4988 295804359 295803756 0.000000e+00 841.0
27 TraesCS3B01G339200 chr4B 86.425 744 68 25 4375 5107 115885644 115884923 0.000000e+00 784.0
28 TraesCS3B01G339200 chr1D 81.410 624 83 15 153 762 452262620 452263224 5.530000e-131 479.0
29 TraesCS3B01G339200 chr6D 89.744 273 25 2 5284 5556 464435229 464434960 5.850000e-91 346.0
30 TraesCS3B01G339200 chr6D 95.812 191 5 2 5486 5674 199650351 199650540 9.940000e-79 305.0
31 TraesCS3B01G339200 chr6D 91.827 208 12 4 5469 5674 214552002 214552206 1.290000e-72 285.0
32 TraesCS3B01G339200 chr6D 90.777 206 19 0 5469 5674 194237449 194237654 7.790000e-70 276.0
33 TraesCS3B01G339200 chr5B 95.699 186 7 1 5492 5677 269975513 269975329 1.660000e-76 298.0
34 TraesCS3B01G339200 chr1B 95.628 183 7 1 5492 5674 217720937 217720756 7.740000e-75 292.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G339200 chr3B 545194697 545202577 7880 False 14554.000000 14554 100.000000 1 7881 1 chr3B.!!$F1 7880
1 TraesCS3B01G339200 chr3B 332939927 332940695 768 True 918.000000 918 88.535000 4376 5140 1 chr3B.!!$R1 764
2 TraesCS3B01G339200 chr3D 418775811 418783275 7464 False 1455.016667 4512 92.403667 11 7881 6 chr3D.!!$F2 7870
3 TraesCS3B01G339200 chr3A 532319677 532328774 9097 True 1639.600000 4078 89.724000 571 7881 5 chr3A.!!$R1 7310
4 TraesCS3B01G339200 chr3A 29431001 29431701 700 False 955.000000 955 91.304000 4376 5081 1 chr3A.!!$F1 705
5 TraesCS3B01G339200 chr7A 709368498 709369721 1223 False 1334.000000 1334 86.651000 4375 5596 1 chr7A.!!$F1 1221
6 TraesCS3B01G339200 chr2A 148595725 148596420 695 True 979.000000 979 91.983000 4376 5081 1 chr2A.!!$R1 705
7 TraesCS3B01G339200 chr4A 200094285 200095006 721 True 933.000000 933 90.095000 4417 5142 1 chr4A.!!$R1 725
8 TraesCS3B01G339200 chr4A 340501181 340501782 601 True 839.000000 839 91.817000 4375 4981 1 chr4A.!!$R2 606
9 TraesCS3B01G339200 chr7D 616480391 616481237 846 False 907.000000 907 86.295000 4831 5674 1 chr7D.!!$F2 843
10 TraesCS3B01G339200 chr6A 268985570 268986882 1312 False 585.000000 876 94.360000 4376 5674 2 chr6A.!!$F1 1298
11 TraesCS3B01G339200 chr2B 352284206 352285585 1379 False 520.500000 861 91.440000 4376 4988 2 chr2B.!!$F1 612
12 TraesCS3B01G339200 chr2D 295803756 295804359 603 True 841.000000 841 91.734000 4376 4988 1 chr2D.!!$R1 612
13 TraesCS3B01G339200 chr4B 115884923 115885644 721 True 784.000000 784 86.425000 4375 5107 1 chr4B.!!$R1 732
14 TraesCS3B01G339200 chr1D 452262620 452263224 604 False 479.000000 479 81.410000 153 762 1 chr1D.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 367 0.032815 TCAGATTGTCGTCGCCAACA 59.967 50.0 0.00 0.0 0.00 3.33 F
363 372 0.249699 TTGTCGTCGCCAACATCTGT 60.250 50.0 0.00 0.0 0.00 3.41 F
2096 4774 0.319211 CACGTTCTTCTACCGCACCA 60.319 55.0 0.00 0.0 0.00 4.17 F
3501 6225 0.167689 GAGAAGCTGCTTTTGCCGAG 59.832 55.0 17.10 0.0 46.87 4.63 F
3645 6741 0.477993 TGGCCCCAAACCTTAGGGTA 60.478 55.0 2.32 0.0 46.67 3.69 F
3844 6942 0.616891 CCTGCCTACTTACCGGGTTT 59.383 55.0 4.31 0.0 0.00 3.27 F
4063 8063 1.194218 AATATGCAGTTTGGGGTGGC 58.806 50.0 0.00 0.0 0.00 5.01 F
5317 9646 0.530744 TCAACTTCGATCGGACCTGG 59.469 55.0 16.41 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 4857 0.607489 ATGACAGAAGGGCACAGTGC 60.607 55.000 17.97 17.97 44.08 4.40 R
2181 4859 1.701847 AGAATGACAGAAGGGCACAGT 59.298 47.619 0.00 0.00 0.00 3.55 R
3820 6918 0.103208 CGGTAAGTAGGCAGGAGCTG 59.897 60.000 0.00 0.00 41.70 4.24 R
4591 8612 0.040336 GACGACACTCTCAAGACGCA 60.040 55.000 0.00 0.00 0.00 5.24 R
5244 9359 0.107312 AGCTGCTCCTTGCTACCATG 60.107 55.000 0.00 0.00 43.37 3.66 R
5249 9364 0.176680 GTGCTAGCTGCTCCTTGCTA 59.823 55.000 17.23 0.00 43.37 3.49 R
5414 9989 0.652592 CGGTTGCCATCAAGATCGAC 59.347 55.000 0.00 0.00 31.93 4.20 R
7238 11946 0.031043 TCAACGACCACCAGTACGTG 59.969 55.000 0.00 0.00 38.92 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 7.602265 AGTTGGTTAAATATTGCACCATTTGAC 59.398 33.333 16.26 14.23 39.10 3.18
110 111 8.807118 TGGTTAAATATTGCACCATTTGACTTA 58.193 29.630 18.67 10.75 34.23 2.24
115 116 9.777297 AAATATTGCACCATTTGACTTAACTTT 57.223 25.926 4.33 0.00 0.00 2.66
220 221 6.924060 ACCTAATCATAGTCATAACTTCGTGC 59.076 38.462 0.00 0.00 36.92 5.34
227 228 3.498397 AGTCATAACTTCGTGCTTTGGTG 59.502 43.478 0.00 0.00 28.74 4.17
228 229 3.250040 GTCATAACTTCGTGCTTTGGTGT 59.750 43.478 0.00 0.00 0.00 4.16
239 240 1.346068 GCTTTGGTGTCTGACTCCTCT 59.654 52.381 24.51 0.00 33.16 3.69
240 241 2.611722 GCTTTGGTGTCTGACTCCTCTC 60.612 54.545 24.51 11.05 33.16 3.20
244 245 1.621992 GTGTCTGACTCCTCTCACCA 58.378 55.000 9.51 0.00 0.00 4.17
245 246 2.175202 GTGTCTGACTCCTCTCACCAT 58.825 52.381 9.51 0.00 0.00 3.55
247 248 1.480137 GTCTGACTCCTCTCACCATGG 59.520 57.143 11.19 11.19 0.00 3.66
252 261 0.617413 CTCCTCTCACCATGGCAAGT 59.383 55.000 13.04 0.00 0.00 3.16
258 267 3.499338 TCTCACCATGGCAAGTTTTGAT 58.501 40.909 13.04 0.00 0.00 2.57
281 290 2.069273 CATCGGTGACTTTGTGAGGTC 58.931 52.381 0.00 0.00 0.00 3.85
303 312 0.324368 GTCCCCCTGGATTTTGGGTC 60.324 60.000 0.00 0.00 44.28 4.46
304 313 0.778078 TCCCCCTGGATTTTGGGTCA 60.778 55.000 0.00 0.00 41.82 4.02
312 321 3.758554 CTGGATTTTGGGTCATCGTCTTT 59.241 43.478 0.00 0.00 0.00 2.52
330 339 1.894756 TTTTTCTGTGGGACGGCGG 60.895 57.895 13.24 0.00 0.00 6.13
345 354 3.472263 GCGGTTTGCGTTTCAGATT 57.528 47.368 0.00 0.00 0.00 2.40
346 355 1.052287 GCGGTTTGCGTTTCAGATTG 58.948 50.000 0.00 0.00 0.00 2.67
356 365 1.529438 GTTTCAGATTGTCGTCGCCAA 59.471 47.619 0.00 0.00 0.00 4.52
357 366 1.144969 TTCAGATTGTCGTCGCCAAC 58.855 50.000 0.00 0.00 0.00 3.77
358 367 0.032815 TCAGATTGTCGTCGCCAACA 59.967 50.000 0.00 0.00 0.00 3.33
362 371 1.061131 GATTGTCGTCGCCAACATCTG 59.939 52.381 0.00 0.00 0.00 2.90
363 372 0.249699 TTGTCGTCGCCAACATCTGT 60.250 50.000 0.00 0.00 0.00 3.41
366 375 2.063266 GTCGTCGCCAACATCTGTTAA 58.937 47.619 0.00 0.00 36.32 2.01
367 376 2.671396 GTCGTCGCCAACATCTGTTAAT 59.329 45.455 0.00 0.00 36.32 1.40
370 379 3.370978 CGTCGCCAACATCTGTTAATTCT 59.629 43.478 0.00 0.00 36.32 2.40
374 383 5.647658 TCGCCAACATCTGTTAATTCTGATT 59.352 36.000 0.00 0.00 36.32 2.57
417 427 0.949105 CAACGTTTCCCTGACTCCGG 60.949 60.000 0.00 0.00 0.00 5.14
419 429 1.370064 CGTTTCCCTGACTCCGGTT 59.630 57.895 0.00 0.00 0.00 4.44
447 457 1.045407 GTGGTCCATAGGCGGTATCA 58.955 55.000 0.00 0.00 0.00 2.15
453 463 4.196971 GTCCATAGGCGGTATCAAGTTTT 58.803 43.478 0.00 0.00 0.00 2.43
458 468 1.202031 GGCGGTATCAAGTTTTGCTCG 60.202 52.381 0.00 0.00 0.00 5.03
628 640 2.572191 ATCGACTTAACCGAATGCGA 57.428 45.000 0.00 0.00 39.62 5.10
630 642 1.200716 TCGACTTAACCGAATGCGACT 59.799 47.619 0.00 0.00 40.82 4.18
643 658 2.383527 GCGACTCGGTGGCAAAGAG 61.384 63.158 16.04 16.04 37.24 2.85
665 680 1.478105 GAGCGGGGCATTTCTCAAAAT 59.522 47.619 0.00 0.00 35.43 1.82
670 685 4.693095 GCGGGGCATTTCTCAAAATAAAAA 59.307 37.500 0.00 0.00 33.27 1.94
671 686 5.353956 GCGGGGCATTTCTCAAAATAAAAAT 59.646 36.000 0.00 0.00 33.27 1.82
673 688 7.065204 GCGGGGCATTTCTCAAAATAAAAATAA 59.935 33.333 0.00 0.00 33.27 1.40
769 785 4.639135 GGTTTCAAAGATGATACCCAGC 57.361 45.455 7.07 0.00 46.24 4.85
770 786 3.381590 GGTTTCAAAGATGATACCCAGCC 59.618 47.826 7.07 0.00 46.24 4.85
772 788 1.140852 TCAAAGATGATACCCAGCCGG 59.859 52.381 0.00 0.00 37.81 6.13
804 3470 3.953712 TCTTGCTCGTTATCCTGAACA 57.046 42.857 0.00 0.00 0.00 3.18
827 3493 0.770557 AACCTTGGTACCCAGCCAGA 60.771 55.000 10.07 0.00 37.31 3.86
878 3544 3.003173 TCCCAGTTCCAGCTCCCG 61.003 66.667 0.00 0.00 0.00 5.14
958 3631 2.362397 TCTTCATCCTCCTCGATTTCGG 59.638 50.000 0.00 0.00 40.29 4.30
1037 3710 0.991920 CCTTGGCTCTTCCCAGGTAA 59.008 55.000 0.00 0.00 41.67 2.85
1051 3724 2.259618 CAGGTAACGTCATGTTCCTCG 58.740 52.381 0.00 0.00 42.09 4.63
1230 3907 1.580845 CCTGCCTTTGACGCTCCAAG 61.581 60.000 0.00 0.00 0.00 3.61
1244 3921 3.308530 GCTCCAAGTTGTCGAAAATTGG 58.691 45.455 22.36 22.36 41.45 3.16
1608 4286 3.062466 GGCAAGAAACCCGGGAGC 61.062 66.667 32.02 19.43 0.00 4.70
1732 4410 6.268617 TCCACTAGATGATACATTGGAGGAAG 59.731 42.308 0.00 0.00 0.00 3.46
1761 4439 7.125536 TGATTCGCTGAATGAATATGTCATC 57.874 36.000 8.22 0.00 46.80 2.92
1974 4652 3.450578 TGTTGACACGGTTAGTTCTCAC 58.549 45.455 0.00 0.00 0.00 3.51
1998 4676 2.229784 GCCTGCACTTATAATGATGGCC 59.770 50.000 0.00 0.00 33.56 5.36
2007 4685 6.093219 CACTTATAATGATGGCCTGTGATAGC 59.907 42.308 3.32 0.00 0.00 2.97
2018 4696 4.399303 GGCCTGTGATAGCTTTTATTGTGT 59.601 41.667 0.00 0.00 0.00 3.72
2060 4738 8.993121 CAACATGGCCAGTTAGTAGAATATAAG 58.007 37.037 13.05 0.00 0.00 1.73
2061 4739 7.162082 ACATGGCCAGTTAGTAGAATATAAGC 58.838 38.462 13.05 0.00 0.00 3.09
2083 4761 2.408050 ACACAGCAGAGATTCACGTTC 58.592 47.619 0.00 0.00 0.00 3.95
2096 4774 0.319211 CACGTTCTTCTACCGCACCA 60.319 55.000 0.00 0.00 0.00 4.17
2151 4829 0.904865 CCCAGTCCAGGTAGCACAGA 60.905 60.000 0.00 0.00 0.00 3.41
2179 4857 1.202639 TGCACTAGGGCATAACGATGG 60.203 52.381 17.75 0.00 39.25 3.51
2187 4865 0.248215 GCATAACGATGGCACTGTGC 60.248 55.000 24.02 24.02 44.08 4.57
2213 4891 6.128445 CCTTCTGTCATTCTGTATGTGTGAAC 60.128 42.308 0.00 0.00 35.64 3.18
2234 4912 3.073062 ACCATTGTCAGGTTCAAGCTAGT 59.927 43.478 0.00 0.00 35.33 2.57
2243 4921 4.756642 CAGGTTCAAGCTAGTTTGTCATGA 59.243 41.667 17.56 0.00 0.00 3.07
2265 4943 7.943079 TGATTTTCCAATGCATCTTCTAGAA 57.057 32.000 4.81 4.81 0.00 2.10
2296 4988 4.689612 AATGTGAACAGAGTGGTGTAGT 57.310 40.909 0.00 0.00 0.00 2.73
2304 4996 3.245797 CAGAGTGGTGTAGTCAATGACG 58.754 50.000 7.83 0.00 37.67 4.35
2323 5015 4.201773 TGACGAAGCCAATATTTTGCGTAG 60.202 41.667 0.00 2.47 31.12 3.51
2331 5023 3.782656 ATATTTTGCGTAGGGGTAGGG 57.217 47.619 0.00 0.00 0.00 3.53
2355 5047 7.417456 GGGGTGTTAAAATATCAAATGACCCTC 60.417 40.741 0.00 0.00 39.48 4.30
2356 5048 7.342026 GGGTGTTAAAATATCAAATGACCCTCT 59.658 37.037 0.00 0.00 37.02 3.69
2365 5065 3.593328 TCAAATGACCCTCTCATCCCTTT 59.407 43.478 0.00 0.00 38.82 3.11
2372 5072 4.439860 ACCCTCTCATCCCTTTTAACTCT 58.560 43.478 0.00 0.00 0.00 3.24
2383 5083 5.724854 TCCCTTTTAACTCTGCTACTGGTAT 59.275 40.000 0.00 0.00 0.00 2.73
2388 5088 4.891992 AACTCTGCTACTGGTATTGTGT 57.108 40.909 0.00 0.00 0.00 3.72
2425 5125 2.223641 CGTGGCATGCAAGCATTATCTT 60.224 45.455 21.36 0.00 33.90 2.40
2428 5128 3.181484 TGGCATGCAAGCATTATCTTGTC 60.181 43.478 21.36 0.00 43.92 3.18
2523 5223 2.602257 TTATGACACATCCAGCTCCG 57.398 50.000 0.00 0.00 0.00 4.63
2525 5225 0.615331 ATGACACATCCAGCTCCGTT 59.385 50.000 0.00 0.00 0.00 4.44
2552 5252 4.691685 TGCTTCAATTTTGATCCACATTGC 59.308 37.500 1.68 0.00 37.00 3.56
2559 5259 2.951457 TGATCCACATTGCAATGCTG 57.049 45.000 33.94 28.00 40.04 4.41
2693 5393 5.845391 TTTACACAAAGAGGAAAGGTTGG 57.155 39.130 0.00 0.00 0.00 3.77
2694 5394 2.666317 ACACAAAGAGGAAAGGTTGGG 58.334 47.619 0.00 0.00 0.00 4.12
2740 5440 6.510799 GCTCATAAGTATACACTGCAGCTTTG 60.511 42.308 15.27 7.51 34.36 2.77
2748 5448 0.395586 ACTGCAGCTTTGTTGGACCA 60.396 50.000 15.27 0.00 0.00 4.02
2759 5459 4.620589 TTGTTGGACCATTTCATTGCAT 57.379 36.364 0.00 0.00 0.00 3.96
2784 5484 0.947244 CAGTTGTGCACACCTTCCTC 59.053 55.000 21.56 4.41 0.00 3.71
2787 5487 1.604278 GTTGTGCACACCTTCCTCTTC 59.396 52.381 21.56 0.00 0.00 2.87
2801 5501 6.208204 ACCTTCCTCTTCATGTTGAATCTTTG 59.792 38.462 0.00 0.00 35.59 2.77
2804 5504 6.973843 TCCTCTTCATGTTGAATCTTTGTTG 58.026 36.000 0.00 0.00 35.59 3.33
2807 5507 7.380602 CCTCTTCATGTTGAATCTTTGTTGTTC 59.619 37.037 0.00 0.00 35.59 3.18
2811 5511 7.202526 TCATGTTGAATCTTTGTTGTTCTTCC 58.797 34.615 0.00 0.00 0.00 3.46
2817 5521 8.421249 TGAATCTTTGTTGTTCTTCCCAATAT 57.579 30.769 0.00 0.00 0.00 1.28
2821 5525 8.017418 TCTTTGTTGTTCTTCCCAATATTTGT 57.983 30.769 0.00 0.00 0.00 2.83
2844 5548 8.474006 TGTAATACCATTAGCATTGTATAGCG 57.526 34.615 0.00 0.00 35.48 4.26
2872 5576 3.882888 TCCCGCCATATTCTGAAACATTC 59.117 43.478 0.00 0.00 0.00 2.67
2877 5581 6.199531 CCGCCATATTCTGAAACATTCATTTG 59.800 38.462 0.00 0.00 39.30 2.32
2893 5597 8.805175 ACATTCATTTGAACACATCTTCCATTA 58.195 29.630 0.00 0.00 36.80 1.90
2894 5598 9.079833 CATTCATTTGAACACATCTTCCATTAC 57.920 33.333 0.00 0.00 36.80 1.89
2895 5599 7.757941 TCATTTGAACACATCTTCCATTACA 57.242 32.000 0.00 0.00 0.00 2.41
2901 5605 8.044060 TGAACACATCTTCCATTACAAATCTC 57.956 34.615 0.00 0.00 0.00 2.75
2902 5606 7.121168 TGAACACATCTTCCATTACAAATCTCC 59.879 37.037 0.00 0.00 0.00 3.71
2906 5610 7.337689 CACATCTTCCATTACAAATCTCCTTGA 59.662 37.037 0.00 0.00 0.00 3.02
2946 5650 8.807948 AATATGTGGTGGAACATTATATAGGC 57.192 34.615 0.00 0.00 44.52 3.93
2957 5661 6.925939 ACATTATATAGGCCCAATACCCAT 57.074 37.500 0.00 0.00 0.00 4.00
2976 5680 0.687920 TGGGTTTATGCGTCACTGGA 59.312 50.000 0.00 0.00 0.00 3.86
2978 5682 1.737793 GGGTTTATGCGTCACTGGAAG 59.262 52.381 0.00 0.00 42.29 3.46
2981 5685 3.120304 GGTTTATGCGTCACTGGAAGAAC 60.120 47.826 0.00 0.00 37.43 3.01
2994 5705 3.243535 CTGGAAGAACTTTGACCAAAGCC 60.244 47.826 19.14 13.24 43.86 4.35
3060 5772 8.311109 ACAAAATACTTCTGGACAACTGTTTTT 58.689 29.630 0.00 0.00 0.00 1.94
3061 5773 8.807581 CAAAATACTTCTGGACAACTGTTTTTC 58.192 33.333 0.00 0.00 0.00 2.29
3062 5774 7.639113 AATACTTCTGGACAACTGTTTTTCA 57.361 32.000 0.00 0.00 0.00 2.69
3073 5785 2.669364 CTGTTTTTCAGCATGGCAGAC 58.331 47.619 0.00 0.00 37.36 3.51
3074 5786 2.030371 TGTTTTTCAGCATGGCAGACA 58.970 42.857 0.00 0.00 36.16 3.41
3075 5787 2.429971 TGTTTTTCAGCATGGCAGACAA 59.570 40.909 0.00 0.00 36.16 3.18
3076 5788 3.054878 GTTTTTCAGCATGGCAGACAAG 58.945 45.455 0.00 0.00 36.16 3.16
3077 5789 1.985473 TTTCAGCATGGCAGACAAGT 58.015 45.000 0.00 0.00 36.16 3.16
3078 5790 1.241165 TTCAGCATGGCAGACAAGTG 58.759 50.000 0.00 0.00 36.16 3.16
3079 5791 1.211969 CAGCATGGCAGACAAGTGC 59.788 57.895 0.34 0.34 43.19 4.40
3080 5792 1.074423 AGCATGGCAGACAAGTGCT 59.926 52.632 5.24 5.24 43.45 4.40
3081 5793 0.538977 AGCATGGCAGACAAGTGCTT 60.539 50.000 5.24 0.00 41.41 3.91
3082 5794 0.316204 GCATGGCAGACAAGTGCTTT 59.684 50.000 1.43 0.00 43.45 3.51
3186 5908 4.150897 ACACAGGTTAGAAGCAGAACAA 57.849 40.909 0.00 0.00 0.00 2.83
3213 5935 7.625682 AGGAGACTAGAAGAAATAGGACCAATT 59.374 37.037 0.00 0.00 40.61 2.32
3305 6027 3.175438 TGAGGAGACTGGTGAAGATGA 57.825 47.619 0.00 0.00 44.43 2.92
3439 6161 9.871238 GTGAAGACCAGATTAAACAGAGTATTA 57.129 33.333 0.00 0.00 0.00 0.98
3467 6191 4.550076 TGGCCCAATTTTCGATTGATTT 57.450 36.364 0.00 0.00 0.00 2.17
3482 6206 6.069563 CGATTGATTTATCTTGCTGACATCG 58.930 40.000 0.00 0.00 0.00 3.84
3498 6222 0.807496 ATCGAGAAGCTGCTTTTGCC 59.193 50.000 17.10 3.45 46.87 4.52
3501 6225 0.167689 GAGAAGCTGCTTTTGCCGAG 59.832 55.000 17.10 0.00 46.87 4.63
3529 6253 8.883731 AGTTATGTGCAGTTCATCTTACATTAC 58.116 33.333 0.00 0.00 34.94 1.89
3560 6284 8.370940 TCTAATAATCCTGCAAAGTCTAGATGG 58.629 37.037 0.00 0.00 0.00 3.51
3569 6661 6.664515 TGCAAAGTCTAGATGGTTTTAAACG 58.335 36.000 0.00 0.00 0.00 3.60
3595 6691 9.363401 GGTATTTAATTAAGGGGTTGCTTAGAT 57.637 33.333 0.00 0.00 0.00 1.98
3599 6695 2.514458 AAGGGGTTGCTTAGATGGTG 57.486 50.000 0.00 0.00 0.00 4.17
3604 6700 3.442625 GGGGTTGCTTAGATGGTGTTAAC 59.557 47.826 0.00 0.00 0.00 2.01
3619 6715 2.067013 GTTAACGCTCAGGGAGTTGTC 58.933 52.381 0.00 0.00 38.36 3.18
3645 6741 0.477993 TGGCCCCAAACCTTAGGGTA 60.478 55.000 2.32 0.00 46.67 3.69
3653 6749 5.013183 CCCCAAACCTTAGGGTATGATCTAG 59.987 48.000 2.32 0.00 46.67 2.43
3704 6802 2.555199 AGTATTTAAGAGCTGCTGCCG 58.445 47.619 7.01 0.00 40.80 5.69
3709 6807 2.099652 TAAGAGCTGCTGCCGTGTGT 62.100 55.000 7.01 0.00 40.80 3.72
3719 6817 1.394917 CTGCCGTGTGTCTTAGAATGC 59.605 52.381 0.00 0.00 0.00 3.56
3723 6821 3.119849 GCCGTGTGTCTTAGAATGCATTT 60.120 43.478 14.33 6.39 0.00 2.32
3745 6843 7.466746 TTTAATGAAGAAGCTGCTTGGTAAT 57.533 32.000 21.25 5.58 0.00 1.89
3746 6844 5.990120 AATGAAGAAGCTGCTTGGTAATT 57.010 34.783 21.25 11.16 0.00 1.40
3806 6904 6.707440 TTCTGGAACTTAATGCAAAAGACA 57.293 33.333 16.60 11.53 0.00 3.41
3807 6905 6.317789 TCTGGAACTTAATGCAAAAGACAG 57.682 37.500 16.60 17.76 0.00 3.51
3814 6912 7.333528 ACTTAATGCAAAAGACAGAGAAACA 57.666 32.000 16.60 0.00 0.00 2.83
3820 6918 6.035843 TGCAAAAGACAGAGAAACAATTGTC 58.964 36.000 12.39 0.00 40.08 3.18
3822 6920 6.197842 GCAAAAGACAGAGAAACAATTGTCAG 59.802 38.462 12.39 0.00 41.74 3.51
3844 6942 0.616891 CCTGCCTACTTACCGGGTTT 59.383 55.000 4.31 0.00 0.00 3.27
3846 6944 2.419159 CCTGCCTACTTACCGGGTTTAC 60.419 54.545 4.31 0.00 0.00 2.01
3857 6955 3.250617 ACCGGGTTTACCTAGGAAAAGA 58.749 45.455 17.98 0.00 37.28 2.52
3889 6987 8.492673 TGGAGTTGAACACAATATGACTTATC 57.507 34.615 0.00 0.00 0.00 1.75
3924 7022 5.011329 AGTTTCATCATTCACATGCCACTTT 59.989 36.000 0.00 0.00 0.00 2.66
4030 7998 7.763528 TGTTTGACTTGTTTGAACTTATGCAAT 59.236 29.630 0.00 0.00 0.00 3.56
4034 8002 7.763528 TGACTTGTTTGAACTTATGCAATTGTT 59.236 29.630 7.40 0.00 0.00 2.83
4042 8042 8.659925 TGAACTTATGCAATTGTTTGACATTT 57.340 26.923 7.40 0.00 34.60 2.32
4063 8063 1.194218 AATATGCAGTTTGGGGTGGC 58.806 50.000 0.00 0.00 0.00 5.01
4213 8215 5.772672 TCCCACATAAAGCATTTTACACTGT 59.227 36.000 0.00 0.00 40.09 3.55
4214 8216 5.863397 CCCACATAAAGCATTTTACACTGTG 59.137 40.000 6.19 6.19 40.09 3.66
4280 8282 7.611467 TGGAGATCCATAACACCATAAATATGC 59.389 37.037 0.00 0.00 42.01 3.14
4330 8332 7.205992 ACTATATAACACATCACTCAGCACTG 58.794 38.462 0.00 0.00 0.00 3.66
4347 8349 5.565259 CAGCACTGAAAATGTTAATCGTGTC 59.435 40.000 0.00 0.00 0.00 3.67
4671 8692 2.039084 GGGGATAACGAAGAGATGGCAT 59.961 50.000 0.00 0.00 0.00 4.40
4834 8869 1.750193 CGGCAAGAGAATGGGCTTAA 58.250 50.000 0.00 0.00 0.00 1.85
4907 8945 3.941483 CAGAAAAAGGCTGACGGACATAT 59.059 43.478 0.00 0.00 35.39 1.78
4970 9010 2.031919 ATTTGGTGGACGCAGCGA 59.968 55.556 24.65 0.00 0.00 4.93
4982 9022 2.778386 GACGCAGCGAAAAATATGAAGC 59.222 45.455 24.65 0.00 0.00 3.86
4983 9023 2.420022 ACGCAGCGAAAAATATGAAGCT 59.580 40.909 24.65 0.00 35.06 3.74
4985 9025 4.206843 CGCAGCGAAAAATATGAAGCTAG 58.793 43.478 9.98 0.00 33.24 3.42
4988 9028 5.906285 GCAGCGAAAAATATGAAGCTAGAAG 59.094 40.000 0.00 0.00 33.24 2.85
4989 9029 6.425504 CAGCGAAAAATATGAAGCTAGAAGG 58.574 40.000 0.00 0.00 33.24 3.46
4990 9030 6.258727 CAGCGAAAAATATGAAGCTAGAAGGA 59.741 38.462 0.00 0.00 33.24 3.36
5005 9052 2.158957 AGAAGGAAAGCACACACGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
5008 9055 2.354821 AGGAAAGCACACACGAGAAAAC 59.645 45.455 0.00 0.00 0.00 2.43
5024 9071 3.005684 AGAAAACGATGCAAAAGCCATCA 59.994 39.130 0.00 0.00 39.17 3.07
5030 9077 4.821260 ACGATGCAAAAGCCATCATGTATA 59.179 37.500 0.00 0.00 39.17 1.47
5047 9094 7.851228 TCATGTATACAGAAGACATTGGACTT 58.149 34.615 11.91 0.00 31.44 3.01
5048 9095 8.977412 TCATGTATACAGAAGACATTGGACTTA 58.023 33.333 11.91 0.00 31.44 2.24
5049 9096 9.770097 CATGTATACAGAAGACATTGGACTTAT 57.230 33.333 11.91 0.00 31.44 1.73
5094 9148 1.965754 ATCGGAGTGGAGCAGAAGCC 61.966 60.000 0.00 0.00 43.56 4.35
5235 9350 4.735132 GCACCACGTAGCAGCGGA 62.735 66.667 5.03 0.00 35.98 5.54
5236 9351 2.809601 CACCACGTAGCAGCGGAC 60.810 66.667 5.03 0.00 35.98 4.79
5237 9352 3.299977 ACCACGTAGCAGCGGACA 61.300 61.111 5.03 0.00 35.98 4.02
5276 9395 2.510238 CAGCTAGCACCAGCGGAC 60.510 66.667 18.83 0.00 46.52 4.79
5300 9629 2.512286 GCGTGCAGGCAGCTATCA 60.512 61.111 25.57 0.00 45.94 2.15
5315 9644 2.034812 GCTATCAACTTCGATCGGACCT 59.965 50.000 16.41 0.00 0.00 3.85
5317 9646 0.530744 TCAACTTCGATCGGACCTGG 59.469 55.000 16.41 0.00 0.00 4.45
5405 9980 1.708993 TTGGAGCAGCAGGTGGAGTT 61.709 55.000 0.86 0.00 0.00 3.01
5406 9981 1.673665 GGAGCAGCAGGTGGAGTTG 60.674 63.158 0.86 0.00 0.00 3.16
5414 9989 3.365265 GGTGGAGTTGCTTGGGCG 61.365 66.667 0.00 0.00 42.25 6.13
5433 10008 0.652592 GTCGATCTTGATGGCAACCG 59.347 55.000 0.00 0.00 0.00 4.44
5449 10024 4.680237 CGGTTGAGGCGGCAGACA 62.680 66.667 13.08 5.54 0.00 3.41
5552 10158 7.304497 ACCTAAGCTCTAATACCATGTTAGG 57.696 40.000 8.93 8.93 40.69 2.69
5607 10215 8.660435 AGGGGCATATATATATTACACATGACC 58.340 37.037 15.15 15.15 39.03 4.02
5633 10242 7.391620 TGAGGTGTAAGGAAACTAAACATAGG 58.608 38.462 0.00 0.00 42.68 2.57
5767 10378 1.734465 GCACGTTTGATGGAAGAGGAG 59.266 52.381 0.00 0.00 0.00 3.69
5774 10385 2.103373 TGATGGAAGAGGAGGAAGACG 58.897 52.381 0.00 0.00 0.00 4.18
5777 10388 0.452585 GGAAGAGGAGGAAGACGTCG 59.547 60.000 10.46 0.00 0.00 5.12
5811 10422 2.549349 CGGTACACCTTAAACTGCACCT 60.549 50.000 0.00 0.00 0.00 4.00
5852 10463 5.623169 TGATTGCATATCATAGGTCTTGCA 58.377 37.500 7.27 0.00 38.24 4.08
5859 10470 7.068470 TGCATATCATAGGTCTTGCAAATTTCA 59.932 33.333 0.00 0.00 37.17 2.69
5864 10475 7.725251 TCATAGGTCTTGCAAATTTCACTTTT 58.275 30.769 0.00 0.00 0.00 2.27
5943 10554 5.118990 GCTACTGCTGTTGATATTGGAGAA 58.881 41.667 9.22 0.00 36.03 2.87
5947 10558 5.356190 ACTGCTGTTGATATTGGAGAACATG 59.644 40.000 0.00 0.00 0.00 3.21
5963 10574 2.867624 ACATGCTGTGAGTGTCCATTT 58.132 42.857 0.00 0.00 0.00 2.32
5978 10589 4.869297 TGTCCATTTGAAGTGCTTGTTTTG 59.131 37.500 0.00 0.00 0.00 2.44
5982 10593 6.429385 TCCATTTGAAGTGCTTGTTTTGTTTT 59.571 30.769 0.00 0.00 0.00 2.43
6209 10831 5.051816 TGAACTACTTTACTGGTTGGAACG 58.948 41.667 0.00 0.00 0.00 3.95
6214 10836 4.625028 ACTTTACTGGTTGGAACGTAGAC 58.375 43.478 0.00 0.00 0.00 2.59
6221 10843 3.575256 TGGTTGGAACGTAGACACTGTAT 59.425 43.478 0.00 0.00 0.00 2.29
6279 10901 2.890311 TGTGCAACCCCAACAATAGAAG 59.110 45.455 0.00 0.00 34.36 2.85
6285 10907 5.652452 GCAACCCCAACAATAGAAGAATAGT 59.348 40.000 0.00 0.00 0.00 2.12
6302 10924 7.959689 AGAATAGTCAGTTTGCTATATGCTG 57.040 36.000 0.00 0.00 43.37 4.41
6321 10943 1.380302 GTGGGGAGCTGGATGTTGT 59.620 57.895 0.00 0.00 0.00 3.32
6348 10970 3.799432 TGGTAACACTGGGCACTAAAT 57.201 42.857 0.00 0.00 46.17 1.40
6357 10990 5.661312 ACACTGGGCACTAAATAGATGTCTA 59.339 40.000 0.00 0.00 0.00 2.59
6358 10991 6.327626 ACACTGGGCACTAAATAGATGTCTAT 59.672 38.462 0.00 0.00 40.68 1.98
6390 11024 8.883731 ACTTGTCCTATCAAAGTTGATAATTCG 58.116 33.333 13.34 3.97 46.26 3.34
6433 11067 2.110006 GATGAGGAAGAGGGCGGC 59.890 66.667 0.00 0.00 0.00 6.53
6469 11103 4.078639 AGTTGAAGGGAAAGTGAGTCAG 57.921 45.455 0.00 0.00 0.00 3.51
6553 11187 6.600882 AAGCATTTTCTGATGGAAACAGAT 57.399 33.333 0.00 0.00 45.54 2.90
6571 11205 7.472334 AACAGATTGATTATGTCTTTTGGCT 57.528 32.000 0.00 0.00 0.00 4.75
6572 11206 7.472334 ACAGATTGATTATGTCTTTTGGCTT 57.528 32.000 0.00 0.00 0.00 4.35
6573 11207 8.579850 ACAGATTGATTATGTCTTTTGGCTTA 57.420 30.769 0.00 0.00 0.00 3.09
6587 11221 8.780249 GTCTTTTGGCTTATAGTAACACTGAAA 58.220 33.333 0.00 0.00 0.00 2.69
6633 11268 9.342308 CATATTGGATGTCTTACCTAATTGTGT 57.658 33.333 0.00 0.00 0.00 3.72
6634 11269 7.630242 ATTGGATGTCTTACCTAATTGTGTG 57.370 36.000 0.00 0.00 0.00 3.82
6635 11270 4.941263 TGGATGTCTTACCTAATTGTGTGC 59.059 41.667 0.00 0.00 0.00 4.57
6636 11271 4.941263 GGATGTCTTACCTAATTGTGTGCA 59.059 41.667 0.00 0.00 0.00 4.57
6637 11272 5.590259 GGATGTCTTACCTAATTGTGTGCAT 59.410 40.000 0.00 0.00 0.00 3.96
6638 11273 6.095440 GGATGTCTTACCTAATTGTGTGCATT 59.905 38.462 0.00 0.00 0.00 3.56
6655 11290 8.439286 TGTGTGCATTTGTTTTAGTTTCTTTTC 58.561 29.630 0.00 0.00 0.00 2.29
6758 11395 3.412386 ACTGTGGCAACTTCTATTCCAC 58.588 45.455 2.99 2.99 45.43 4.02
6771 11408 8.443953 ACTTCTATTCCACATAATGCTTCTTC 57.556 34.615 0.00 0.00 0.00 2.87
6835 11472 8.467598 TCACTTAAAGACGCTATTAATGAGTCT 58.532 33.333 14.07 14.07 44.21 3.24
6886 11523 9.928236 GACTTTGAAGAAGATGAGTAATATTGC 57.072 33.333 0.00 0.00 0.00 3.56
6896 11533 7.224297 AGATGAGTAATATTGCGGGTGTTTAT 58.776 34.615 0.00 0.00 0.00 1.40
6898 11535 7.633193 TGAGTAATATTGCGGGTGTTTATTT 57.367 32.000 0.00 0.00 0.00 1.40
6905 11542 4.657436 TGCGGGTGTTTATTTTCTGTTT 57.343 36.364 0.00 0.00 0.00 2.83
6910 11547 4.210328 GGGTGTTTATTTTCTGTTTTGCGG 59.790 41.667 0.00 0.00 0.00 5.69
7026 11665 3.444703 GAGCCATACTCACTCGATGTT 57.555 47.619 0.00 0.00 45.49 2.71
7057 11696 7.606839 GGTTGAGTTTCTAGGTTTAGTTGCTAT 59.393 37.037 0.00 0.00 0.00 2.97
7075 11714 5.839621 TGCTATAAACATACTCCCTTCGTC 58.160 41.667 0.00 0.00 0.00 4.20
7093 11732 2.095768 CGTCGGAAATGCAAGACATGTT 60.096 45.455 0.00 0.00 39.60 2.71
7094 11733 3.609175 CGTCGGAAATGCAAGACATGTTT 60.609 43.478 0.00 0.00 39.60 2.83
7117 11758 4.214437 GACTTTTCAGTCTTGAATGCACG 58.786 43.478 0.00 0.00 45.54 5.34
7118 11759 3.876914 ACTTTTCAGTCTTGAATGCACGA 59.123 39.130 0.00 0.00 42.60 4.35
7225 11933 9.778993 AATAATATTATTCGTGCATGCTCATTC 57.221 29.630 20.33 3.56 0.00 2.67
7226 11934 3.969117 TTATTCGTGCATGCTCATTCC 57.031 42.857 20.33 0.00 0.00 3.01
7227 11935 1.753930 ATTCGTGCATGCTCATTCCA 58.246 45.000 20.33 0.00 0.00 3.53
7228 11936 1.753930 TTCGTGCATGCTCATTCCAT 58.246 45.000 20.33 0.00 0.00 3.41
7229 11937 1.018910 TCGTGCATGCTCATTCCATG 58.981 50.000 20.33 1.82 42.23 3.66
7230 11938 0.736636 CGTGCATGCTCATTCCATGT 59.263 50.000 20.33 0.00 41.56 3.21
7231 11939 1.941975 CGTGCATGCTCATTCCATGTA 59.058 47.619 20.33 0.00 41.56 2.29
7232 11940 2.286595 CGTGCATGCTCATTCCATGTAC 60.287 50.000 20.33 11.03 46.22 2.90
7233 11941 2.947652 GTGCATGCTCATTCCATGTACT 59.052 45.455 20.33 0.00 46.20 2.73
7234 11942 3.379372 GTGCATGCTCATTCCATGTACTT 59.621 43.478 20.33 0.00 46.20 2.24
7235 11943 4.018490 TGCATGCTCATTCCATGTACTTT 58.982 39.130 20.33 0.00 41.56 2.66
7236 11944 4.463539 TGCATGCTCATTCCATGTACTTTT 59.536 37.500 20.33 0.00 41.56 2.27
7237 11945 5.651576 TGCATGCTCATTCCATGTACTTTTA 59.348 36.000 20.33 0.00 41.56 1.52
7238 11946 5.973565 GCATGCTCATTCCATGTACTTTTAC 59.026 40.000 11.37 0.00 41.56 2.01
7239 11947 6.404623 GCATGCTCATTCCATGTACTTTTACA 60.405 38.462 11.37 0.00 42.53 2.41
7240 11948 6.494893 TGCTCATTCCATGTACTTTTACAC 57.505 37.500 0.00 0.00 41.12 2.90
7241 11949 5.121611 TGCTCATTCCATGTACTTTTACACG 59.878 40.000 0.00 0.00 41.12 4.49
7242 11950 5.121768 GCTCATTCCATGTACTTTTACACGT 59.878 40.000 0.00 0.00 41.12 4.49
7243 11951 6.311935 GCTCATTCCATGTACTTTTACACGTA 59.688 38.462 0.00 0.00 41.12 3.57
7244 11952 7.585286 TCATTCCATGTACTTTTACACGTAC 57.415 36.000 0.00 0.00 41.12 3.67
7245 11953 7.380536 TCATTCCATGTACTTTTACACGTACT 58.619 34.615 0.00 0.00 41.12 2.73
7246 11954 7.329962 TCATTCCATGTACTTTTACACGTACTG 59.670 37.037 0.00 0.00 41.12 2.74
7247 11955 5.472148 TCCATGTACTTTTACACGTACTGG 58.528 41.667 0.00 0.00 41.12 4.00
7248 11956 5.010922 TCCATGTACTTTTACACGTACTGGT 59.989 40.000 0.00 0.00 41.12 4.00
7249 11957 5.119588 CCATGTACTTTTACACGTACTGGTG 59.880 44.000 0.00 0.00 41.12 4.17
7250 11958 4.619973 TGTACTTTTACACGTACTGGTGG 58.380 43.478 5.97 0.00 42.23 4.61
7251 11959 3.825143 ACTTTTACACGTACTGGTGGT 57.175 42.857 5.97 0.00 42.23 4.16
7252 11960 3.721035 ACTTTTACACGTACTGGTGGTC 58.279 45.455 5.97 0.00 42.23 4.02
7253 11961 2.420628 TTTACACGTACTGGTGGTCG 57.579 50.000 5.97 0.00 42.23 4.79
7254 11962 1.317613 TTACACGTACTGGTGGTCGT 58.682 50.000 5.97 0.00 42.23 4.34
7255 11963 1.317613 TACACGTACTGGTGGTCGTT 58.682 50.000 5.97 0.00 42.23 3.85
7256 11964 0.249155 ACACGTACTGGTGGTCGTTG 60.249 55.000 5.97 0.00 42.23 4.10
7257 11965 0.031043 CACGTACTGGTGGTCGTTGA 59.969 55.000 0.00 0.00 34.27 3.18
7258 11966 0.031178 ACGTACTGGTGGTCGTTGAC 59.969 55.000 0.00 0.00 31.47 3.18
7259 11967 0.313043 CGTACTGGTGGTCGTTGACT 59.687 55.000 0.00 0.00 32.47 3.41
7260 11968 1.779569 GTACTGGTGGTCGTTGACTG 58.220 55.000 0.00 0.00 32.47 3.51
7261 11969 0.032952 TACTGGTGGTCGTTGACTGC 59.967 55.000 0.00 0.00 32.47 4.40
7262 11970 1.227527 CTGGTGGTCGTTGACTGCA 60.228 57.895 0.00 0.00 32.47 4.41
7263 11971 0.813610 CTGGTGGTCGTTGACTGCAA 60.814 55.000 0.00 0.00 32.47 4.08
7264 11972 0.813610 TGGTGGTCGTTGACTGCAAG 60.814 55.000 0.00 0.00 42.29 4.01
7265 11973 1.279840 GTGGTCGTTGACTGCAAGC 59.720 57.895 0.00 0.00 37.60 4.01
7266 11974 1.153269 TGGTCGTTGACTGCAAGCA 60.153 52.632 0.00 0.00 37.60 3.91
7267 11975 0.534877 TGGTCGTTGACTGCAAGCAT 60.535 50.000 0.00 0.00 37.60 3.79
7274 11982 6.018262 GGTCGTTGACTGCAAGCATAATTATA 60.018 38.462 0.00 0.00 37.60 0.98
7284 11992 8.690203 TGCAAGCATAATTATACACCTTACAT 57.310 30.769 0.00 0.00 0.00 2.29
7317 12025 6.980416 AAGGGAGTATAGTCCATCAGTAAC 57.020 41.667 24.92 7.79 38.52 2.50
7327 12035 5.819991 AGTCCATCAGTAACATTGAATGGT 58.180 37.500 10.27 5.41 31.22 3.55
7358 12066 5.745294 GCGAAATCATGAATATGTTGCACTT 59.255 36.000 0.00 0.00 35.73 3.16
7567 12275 9.336171 ACACAAGCAAACCAAACAATTAATTAT 57.664 25.926 0.00 0.00 0.00 1.28
7660 12368 6.824704 GCACACACTTATAAATACCTGGGTAA 59.175 38.462 3.45 0.00 33.99 2.85
7665 12373 9.676861 ACACTTATAAATACCTGGGTAAAGAAC 57.323 33.333 12.40 0.00 33.99 3.01
7688 12396 5.253096 ACTTCTATACCCAGGGTTGTTCAAT 59.747 40.000 19.18 5.39 37.09 2.57
7715 12423 1.283487 GGCCAACCGTGTAAAACCG 59.717 57.895 0.00 0.00 0.00 4.44
7775 12483 3.160575 AGTATGGACCCCAATACCCTT 57.839 47.619 0.00 0.00 36.95 3.95
7776 12484 2.783510 AGTATGGACCCCAATACCCTTG 59.216 50.000 0.00 0.00 36.95 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.324163 AGGAAAACTGTCAACATCTACAATAC 57.676 34.615 0.00 0.00 0.00 1.89
62 63 6.209788 ACCAACTTTGTAAGGAAAACTGTCAA 59.790 34.615 0.00 0.00 0.00 3.18
63 64 5.712917 ACCAACTTTGTAAGGAAAACTGTCA 59.287 36.000 0.00 0.00 0.00 3.58
64 65 6.203808 ACCAACTTTGTAAGGAAAACTGTC 57.796 37.500 0.00 0.00 0.00 3.51
65 66 6.599356 AACCAACTTTGTAAGGAAAACTGT 57.401 33.333 0.00 0.00 0.00 3.55
115 116 9.807921 CTCCAAAAGGAAGGCCTATAAAATATA 57.192 33.333 5.16 0.00 46.28 0.86
119 120 5.899278 ACTCCAAAAGGAAGGCCTATAAAA 58.101 37.500 5.16 0.00 46.28 1.52
127 128 0.036306 TCCGACTCCAAAAGGAAGGC 59.964 55.000 0.00 0.00 0.00 4.35
170 171 8.601476 GTCTCGGTAAATACCAAACTTTGATAG 58.399 37.037 10.10 0.00 46.80 2.08
173 174 5.702209 GGTCTCGGTAAATACCAAACTTTGA 59.298 40.000 10.10 0.00 46.80 2.69
175 176 5.872963 AGGTCTCGGTAAATACCAAACTTT 58.127 37.500 10.10 0.00 46.80 2.66
198 199 8.817100 CAAAGCACGAAGTTATGACTATGATTA 58.183 33.333 0.00 0.00 41.61 1.75
201 202 5.580691 CCAAAGCACGAAGTTATGACTATGA 59.419 40.000 0.00 0.00 41.61 2.15
203 204 5.351465 CACCAAAGCACGAAGTTATGACTAT 59.649 40.000 0.00 0.00 41.61 2.12
220 221 2.630098 TGAGAGGAGTCAGACACCAAAG 59.370 50.000 18.30 0.00 30.76 2.77
227 228 1.480137 CCATGGTGAGAGGAGTCAGAC 59.520 57.143 2.57 0.00 0.00 3.51
228 229 1.857965 CCATGGTGAGAGGAGTCAGA 58.142 55.000 2.57 0.00 0.00 3.27
239 240 2.288948 GCATCAAAACTTGCCATGGTGA 60.289 45.455 14.67 7.54 0.00 4.02
240 241 2.070783 GCATCAAAACTTGCCATGGTG 58.929 47.619 14.67 6.79 0.00 4.17
247 248 1.067635 ACCGATGGCATCAAAACTTGC 60.068 47.619 25.88 0.00 0.00 4.01
252 261 2.198827 AGTCACCGATGGCATCAAAA 57.801 45.000 25.88 6.53 30.46 2.44
258 267 0.107643 TCACAAAGTCACCGATGGCA 59.892 50.000 0.00 0.00 30.46 4.92
312 321 1.894756 CCGCCGTCCCACAGAAAAA 60.895 57.895 0.00 0.00 0.00 1.94
330 339 2.964768 GACGACAATCTGAAACGCAAAC 59.035 45.455 0.00 0.00 0.00 2.93
346 355 1.705256 TAACAGATGTTGGCGACGAC 58.295 50.000 0.01 0.01 45.61 4.34
356 365 7.099764 AGTCGTCAATCAGAATTAACAGATGT 58.900 34.615 0.00 0.00 0.00 3.06
357 366 7.531280 AGTCGTCAATCAGAATTAACAGATG 57.469 36.000 0.00 0.00 0.00 2.90
358 367 7.278868 GGAAGTCGTCAATCAGAATTAACAGAT 59.721 37.037 0.00 0.00 0.00 2.90
362 371 5.220416 CCGGAAGTCGTCAATCAGAATTAAC 60.220 44.000 0.00 0.00 37.11 2.01
363 372 4.868171 CCGGAAGTCGTCAATCAGAATTAA 59.132 41.667 0.00 0.00 37.11 1.40
366 375 2.893637 CCGGAAGTCGTCAATCAGAAT 58.106 47.619 0.00 0.00 37.11 2.40
367 376 1.671850 GCCGGAAGTCGTCAATCAGAA 60.672 52.381 5.05 0.00 37.11 3.02
370 379 0.108804 GAGCCGGAAGTCGTCAATCA 60.109 55.000 5.05 0.00 37.11 2.57
406 416 2.052047 AACCACAACCGGAGTCAGGG 62.052 60.000 9.46 6.78 0.00 4.45
417 427 2.889200 TGGACCACCAAACCACAAC 58.111 52.632 0.00 0.00 43.91 3.32
447 457 4.683334 GCGCCGCGAGCAAAACTT 62.683 61.111 18.91 0.00 44.04 2.66
481 491 1.258445 AATCGACACCGCCTTCCTCT 61.258 55.000 0.00 0.00 35.37 3.69
628 640 0.605589 CTCTCTCTTTGCCACCGAGT 59.394 55.000 0.00 0.00 0.00 4.18
630 642 1.293498 GCTCTCTCTTTGCCACCGA 59.707 57.895 0.00 0.00 0.00 4.69
643 658 0.392998 TTGAGAAATGCCCCGCTCTC 60.393 55.000 0.00 0.00 35.82 3.20
683 698 7.549488 CCCGCTCTCTCTTTTTATTCTTTCTTA 59.451 37.037 0.00 0.00 0.00 2.10
737 752 5.423610 TCATCTTTGAAACCAGGGTTTTTCA 59.576 36.000 16.94 9.32 46.80 2.69
767 783 1.134438 AGAAGAAAGGGGTTCCGGCT 61.134 55.000 0.00 0.00 36.86 5.52
768 784 0.251209 AAGAAGAAAGGGGTTCCGGC 60.251 55.000 0.00 0.00 36.86 6.13
769 785 1.534729 CAAGAAGAAAGGGGTTCCGG 58.465 55.000 0.00 0.00 36.86 5.14
770 786 0.881796 GCAAGAAGAAAGGGGTTCCG 59.118 55.000 0.00 0.00 36.86 4.30
772 788 1.807142 CGAGCAAGAAGAAAGGGGTTC 59.193 52.381 0.00 0.00 36.38 3.62
827 3493 0.821711 CCGTGTGTTCCATGGTTGGT 60.822 55.000 12.58 0.00 44.11 3.67
878 3544 6.168270 AGAGTTATCTGGATTTAGGTGCTC 57.832 41.667 0.00 0.00 33.30 4.26
988 3661 3.864686 CGCCATGGTTCTTCGCCG 61.865 66.667 14.67 1.29 0.00 6.46
1037 3710 2.519377 TGAAACGAGGAACATGACGT 57.481 45.000 0.00 0.00 40.64 4.34
1051 3724 1.269569 CGGGGGTTTGAAGCTTGAAAC 60.270 52.381 27.20 27.20 34.22 2.78
1087 3760 3.265995 GGGGAGGTCAAATTCTCTGGTAA 59.734 47.826 0.00 0.00 0.00 2.85
1088 3761 2.844348 GGGGAGGTCAAATTCTCTGGTA 59.156 50.000 0.00 0.00 0.00 3.25
1230 3907 1.052287 CGCAGCCAATTTTCGACAAC 58.948 50.000 0.00 0.00 0.00 3.32
1353 4031 2.278857 ATCGTGCATCTCCGCGTC 60.279 61.111 4.92 0.00 39.54 5.19
1608 4286 1.282157 CCCTTGTACCCTTTCCTCCTG 59.718 57.143 0.00 0.00 0.00 3.86
1656 4334 3.314331 CCACTGGTCTCCGCACCT 61.314 66.667 0.00 0.00 37.34 4.00
1732 4410 6.639686 ACATATTCATTCAGCGAATCATTTGC 59.360 34.615 0.67 0.67 40.48 3.68
1761 4439 3.432051 CTCCTTGGGCGCCTCGTAG 62.432 68.421 28.56 17.21 0.00 3.51
1915 4593 2.821969 GCCATCTTGACCACATTTCTGT 59.178 45.455 0.00 0.00 35.44 3.41
1974 4652 4.558095 GCCATCATTATAAGTGCAGGCAAG 60.558 45.833 11.57 0.00 36.71 4.01
1998 4676 7.332926 AGACAGACACAATAAAAGCTATCACAG 59.667 37.037 0.00 0.00 0.00 3.66
2007 4685 7.226720 ACAACAGGTAGACAGACACAATAAAAG 59.773 37.037 0.00 0.00 0.00 2.27
2018 4696 4.503123 CCATGTTGACAACAGGTAGACAGA 60.503 45.833 26.15 1.74 45.95 3.41
2061 4739 3.223423 ACGTGAATCTCTGCTGTGTAG 57.777 47.619 0.00 0.00 0.00 2.74
2080 4758 1.873698 TTGTGGTGCGGTAGAAGAAC 58.126 50.000 0.00 0.00 0.00 3.01
2083 4761 3.938963 ACATAATTGTGGTGCGGTAGAAG 59.061 43.478 7.15 0.00 33.85 2.85
2134 4812 0.969149 TGTCTGTGCTACCTGGACTG 59.031 55.000 0.00 0.00 37.91 3.51
2179 4857 0.607489 ATGACAGAAGGGCACAGTGC 60.607 55.000 17.97 17.97 44.08 4.40
2181 4859 1.701847 AGAATGACAGAAGGGCACAGT 59.298 47.619 0.00 0.00 0.00 3.55
2187 4865 4.633126 CACACATACAGAATGACAGAAGGG 59.367 45.833 0.00 0.00 39.69 3.95
2213 4891 3.679389 ACTAGCTTGAACCTGACAATGG 58.321 45.455 1.04 0.00 0.00 3.16
2234 4912 6.703319 AGATGCATTGGAAAATCATGACAAA 58.297 32.000 0.00 0.00 0.00 2.83
2243 4921 8.302515 ACATTCTAGAAGATGCATTGGAAAAT 57.697 30.769 11.53 0.00 0.00 1.82
2265 4943 7.665559 ACCACTCTGTTCACATTTACATTACAT 59.334 33.333 0.00 0.00 0.00 2.29
2296 4988 5.101628 GCAAAATATTGGCTTCGTCATTGA 58.898 37.500 5.38 0.00 37.02 2.57
2304 4996 3.243401 CCCCTACGCAAAATATTGGCTTC 60.243 47.826 9.80 0.00 37.02 3.86
2323 5015 5.391577 TGATATTTTAACACCCCTACCCC 57.608 43.478 0.00 0.00 0.00 4.95
2331 5023 8.293699 AGAGGGTCATTTGATATTTTAACACC 57.706 34.615 0.00 0.00 0.00 4.16
2355 5047 5.814705 CAGTAGCAGAGTTAAAAGGGATGAG 59.185 44.000 0.00 0.00 0.00 2.90
2356 5048 5.338381 CCAGTAGCAGAGTTAAAAGGGATGA 60.338 44.000 0.00 0.00 0.00 2.92
2365 5065 6.163476 CACACAATACCAGTAGCAGAGTTAA 58.837 40.000 0.00 0.00 0.00 2.01
2372 5072 2.224402 TGCACACACAATACCAGTAGCA 60.224 45.455 0.00 0.00 0.00 3.49
2404 5104 1.335810 AGATAATGCTTGCATGCCACG 59.664 47.619 20.65 4.34 0.00 4.94
2425 5125 6.437928 ACATTAACTCGTAAACTGTACGACA 58.562 36.000 4.58 0.00 43.85 4.35
2428 5128 8.853345 ACATAACATTAACTCGTAAACTGTACG 58.147 33.333 0.00 0.00 41.79 3.67
2446 5146 6.594788 AAAACTGAATCAGGCACATAACAT 57.405 33.333 15.38 0.00 35.51 2.71
2523 5223 9.754382 ATGTGGATCAAAATTGAAGCATATAAC 57.246 29.630 0.00 0.00 41.13 1.89
2525 5225 9.752961 CAATGTGGATCAAAATTGAAGCATATA 57.247 29.630 7.16 0.00 41.13 0.86
2552 5252 6.538381 ACCTAAAAAGAACAAAACCAGCATTG 59.462 34.615 0.00 0.00 0.00 2.82
2559 5259 6.592220 TGCAAAGACCTAAAAAGAACAAAACC 59.408 34.615 0.00 0.00 0.00 3.27
2599 5299 7.285401 TCTCCAAATATTTTAATCTGCCCAGTC 59.715 37.037 0.00 0.00 0.00 3.51
2693 5393 9.116067 TGAGCAATAACTATTGTGGTATTTACC 57.884 33.333 10.38 0.00 43.72 2.85
2712 5412 5.468072 GCTGCAGTGTATACTTATGAGCAAT 59.532 40.000 16.64 0.00 32.57 3.56
2728 5428 0.031178 GGTCCAACAAAGCTGCAGTG 59.969 55.000 16.64 8.48 0.00 3.66
2729 5429 0.395586 TGGTCCAACAAAGCTGCAGT 60.396 50.000 16.64 0.00 0.00 4.40
2740 5440 5.521010 CACATATGCAATGAAATGGTCCAAC 59.479 40.000 13.53 0.00 0.00 3.77
2781 5481 6.742109 ACAACAAAGATTCAACATGAAGAGG 58.258 36.000 0.00 0.00 40.05 3.69
2784 5484 8.638685 AAGAACAACAAAGATTCAACATGAAG 57.361 30.769 0.00 0.00 40.05 3.02
2787 5487 6.421801 GGGAAGAACAACAAAGATTCAACATG 59.578 38.462 0.00 0.00 0.00 3.21
2801 5501 9.797556 GGTATTACAAATATTGGGAAGAACAAC 57.202 33.333 0.00 0.00 34.12 3.32
2821 5525 7.100409 TGCGCTATACAATGCTAATGGTATTA 58.900 34.615 9.73 0.00 35.06 0.98
2844 5548 2.622942 TCAGAATATGGCGGGAAAATGC 59.377 45.455 0.00 0.00 0.00 3.56
2872 5576 8.815141 TTTGTAATGGAAGATGTGTTCAAATG 57.185 30.769 0.00 0.00 0.00 2.32
2877 5581 7.337942 AGGAGATTTGTAATGGAAGATGTGTTC 59.662 37.037 0.00 0.00 0.00 3.18
2893 5597 3.438087 CGATGCAACTCAAGGAGATTTGT 59.562 43.478 0.00 0.00 38.68 2.83
2894 5598 3.438087 ACGATGCAACTCAAGGAGATTTG 59.562 43.478 0.00 0.00 39.25 2.32
2895 5599 3.679389 ACGATGCAACTCAAGGAGATTT 58.321 40.909 0.00 0.00 33.32 2.17
2901 5605 4.481930 TTTGTTACGATGCAACTCAAGG 57.518 40.909 0.00 0.00 0.00 3.61
2902 5606 7.216881 CACATATTTGTTACGATGCAACTCAAG 59.783 37.037 0.00 0.00 32.34 3.02
2906 5610 5.414454 ACCACATATTTGTTACGATGCAACT 59.586 36.000 0.00 0.00 32.34 3.16
2957 5661 0.687920 TCCAGTGACGCATAAACCCA 59.312 50.000 0.00 0.00 0.00 4.51
3024 5735 9.216117 GTCCAGAAGTATTTTGTAATACACACT 57.784 33.333 9.84 0.00 45.60 3.55
3030 5741 9.787435 ACAGTTGTCCAGAAGTATTTTGTAATA 57.213 29.630 0.00 0.00 0.00 0.98
3060 5772 1.239296 GCACTTGTCTGCCATGCTGA 61.239 55.000 0.00 0.00 34.32 4.26
3061 5773 1.211969 GCACTTGTCTGCCATGCTG 59.788 57.895 0.00 0.00 33.44 4.41
3062 5774 1.074423 AGCACTTGTCTGCCATGCT 59.926 52.632 0.00 0.00 41.72 3.79
3063 5775 0.316204 AAAGCACTTGTCTGCCATGC 59.684 50.000 0.00 0.00 37.96 4.06
3064 5776 2.806608 AAAAGCACTTGTCTGCCATG 57.193 45.000 0.00 0.00 37.96 3.66
3065 5777 2.694628 TGAAAAAGCACTTGTCTGCCAT 59.305 40.909 0.00 0.00 37.96 4.40
3066 5778 2.098614 TGAAAAAGCACTTGTCTGCCA 58.901 42.857 0.00 0.00 37.96 4.92
3067 5779 2.735823 CTGAAAAAGCACTTGTCTGCC 58.264 47.619 0.00 0.00 37.96 4.85
3078 5790 4.300803 TGACAATGTCATGCTGAAAAAGC 58.699 39.130 12.63 0.00 44.15 3.51
3079 5791 5.526115 ACTGACAATGTCATGCTGAAAAAG 58.474 37.500 17.10 3.62 41.94 2.27
3080 5792 5.518848 ACTGACAATGTCATGCTGAAAAA 57.481 34.783 17.10 0.00 41.94 1.94
3081 5793 6.262944 AGTTACTGACAATGTCATGCTGAAAA 59.737 34.615 17.10 3.34 41.94 2.29
3082 5794 5.764686 AGTTACTGACAATGTCATGCTGAAA 59.235 36.000 17.10 2.89 41.94 2.69
3092 5804 6.827727 AGTCCTTACAAGTTACTGACAATGT 58.172 36.000 0.00 0.00 35.55 2.71
3154 5876 6.183360 GCTTCTAACCTGTGTTTATTGCGTAT 60.183 38.462 0.00 0.00 35.87 3.06
3155 5877 5.121142 GCTTCTAACCTGTGTTTATTGCGTA 59.879 40.000 0.00 0.00 35.87 4.42
3156 5878 4.083484 GCTTCTAACCTGTGTTTATTGCGT 60.083 41.667 0.00 0.00 35.87 5.24
3157 5879 4.083537 TGCTTCTAACCTGTGTTTATTGCG 60.084 41.667 0.00 0.00 35.87 4.85
3186 5908 6.503944 TGGTCCTATTTCTTCTAGTCTCCTT 58.496 40.000 0.00 0.00 0.00 3.36
3213 5935 6.994421 TCTACCCATTCTGAATAGTATGCA 57.006 37.500 1.98 0.00 32.24 3.96
3454 6178 7.815641 TGTCAGCAAGATAAATCAATCGAAAA 58.184 30.769 0.00 0.00 0.00 2.29
3458 6182 6.069563 CGATGTCAGCAAGATAAATCAATCG 58.930 40.000 0.00 0.00 0.00 3.34
3467 6191 3.382865 AGCTTCTCGATGTCAGCAAGATA 59.617 43.478 7.70 0.00 34.49 1.98
3482 6206 0.167689 CTCGGCAAAAGCAGCTTCTC 59.832 55.000 8.48 0.41 0.00 2.87
3498 6222 5.344066 AGATGAACTGCACATAACTACTCG 58.656 41.667 0.00 0.00 0.00 4.18
3501 6225 7.827819 TGTAAGATGAACTGCACATAACTAC 57.172 36.000 0.00 0.00 0.00 2.73
3529 6253 8.286191 AGACTTTGCAGGATTATTAGAAAAGG 57.714 34.615 0.00 0.00 0.00 3.11
3569 6661 8.756486 TCTAAGCAACCCCTTAATTAAATACC 57.244 34.615 0.00 0.00 0.00 2.73
3577 6669 4.017499 ACACCATCTAAGCAACCCCTTAAT 60.017 41.667 0.00 0.00 0.00 1.40
3579 6671 2.916934 ACACCATCTAAGCAACCCCTTA 59.083 45.455 0.00 0.00 0.00 2.69
3580 6672 1.710809 ACACCATCTAAGCAACCCCTT 59.289 47.619 0.00 0.00 0.00 3.95
3595 6691 0.320374 CTCCCTGAGCGTTAACACCA 59.680 55.000 6.39 0.00 0.00 4.17
3599 6695 2.067013 GACAACTCCCTGAGCGTTAAC 58.933 52.381 0.00 0.00 32.04 2.01
3619 6715 2.989253 GTTTGGGGCCAAGTCGGG 60.989 66.667 4.39 0.00 37.24 5.14
3621 6717 0.250989 TAAGGTTTGGGGCCAAGTCG 60.251 55.000 4.39 0.00 37.24 4.18
3681 6779 4.570772 CGGCAGCAGCTCTTAAATACTTAA 59.429 41.667 0.00 0.00 41.70 1.85
3687 6785 1.089920 CACGGCAGCAGCTCTTAAAT 58.910 50.000 0.00 0.00 41.70 1.40
3690 6788 1.374631 CACACGGCAGCAGCTCTTA 60.375 57.895 0.00 0.00 41.70 2.10
3699 6797 1.394917 GCATTCTAAGACACACGGCAG 59.605 52.381 0.00 0.00 0.00 4.85
3704 6802 9.282247 CTTCATTAAATGCATTCTAAGACACAC 57.718 33.333 13.38 0.00 0.00 3.82
3709 6807 9.182214 AGCTTCTTCATTAAATGCATTCTAAGA 57.818 29.630 13.38 13.42 0.00 2.10
3719 6817 5.717119 ACCAAGCAGCTTCTTCATTAAATG 58.283 37.500 4.07 0.00 0.00 2.32
3723 6821 7.466746 AAATTACCAAGCAGCTTCTTCATTA 57.533 32.000 4.07 0.00 0.00 1.90
3804 6902 3.817647 GGAGCTGACAATTGTTTCTCTGT 59.182 43.478 23.00 5.85 0.00 3.41
3806 6904 4.070716 CAGGAGCTGACAATTGTTTCTCT 58.929 43.478 23.00 14.90 32.44 3.10
3807 6905 3.365767 GCAGGAGCTGACAATTGTTTCTC 60.366 47.826 13.36 17.10 37.91 2.87
3814 6912 1.912043 AGTAGGCAGGAGCTGACAATT 59.088 47.619 0.00 0.00 42.99 2.32
3820 6918 0.103208 CGGTAAGTAGGCAGGAGCTG 59.897 60.000 0.00 0.00 41.70 4.24
3822 6920 1.442148 CCGGTAAGTAGGCAGGAGC 59.558 63.158 0.00 0.00 41.10 4.70
3844 6942 6.945636 TCCAATGAGTTCTTTTCCTAGGTA 57.054 37.500 9.08 0.00 0.00 3.08
3880 6978 9.730705 TGAAACTGAAGAGAAATGATAAGTCAT 57.269 29.630 0.00 0.00 46.91 3.06
3889 6987 8.294577 TGTGAATGATGAAACTGAAGAGAAATG 58.705 33.333 0.00 0.00 0.00 2.32
4007 7975 7.763528 ACAATTGCATAAGTTCAAACAAGTCAA 59.236 29.630 5.05 0.00 0.00 3.18
4034 8002 7.102346 CCCCAAACTGCATATTTAAATGTCAA 58.898 34.615 11.05 0.00 0.00 3.18
4042 8042 2.763448 GCCACCCCAAACTGCATATTTA 59.237 45.455 0.00 0.00 0.00 1.40
4063 8063 2.742053 CACAGTTGGGTAAACAGGATCG 59.258 50.000 0.00 0.00 41.61 3.69
4129 8129 1.840635 GGGGTAGGCTCATGAAACTCT 59.159 52.381 0.00 0.00 0.00 3.24
4132 8132 1.559682 TCAGGGGTAGGCTCATGAAAC 59.440 52.381 0.00 0.00 32.42 2.78
4213 8215 5.188948 TGAATCTAGTAAACCTTAGCTGGCA 59.811 40.000 0.00 0.00 0.00 4.92
4214 8216 5.671493 TGAATCTAGTAAACCTTAGCTGGC 58.329 41.667 0.00 0.00 0.00 4.85
4280 8282 9.152595 GTACTAAAGACCCTTAGAAAGTTCATG 57.847 37.037 0.00 0.00 33.78 3.07
4322 8324 5.238432 ACACGATTAACATTTTCAGTGCTGA 59.762 36.000 0.00 0.00 37.91 4.26
4330 8332 6.855914 ACACATGTGACACGATTAACATTTTC 59.144 34.615 31.94 0.00 30.98 2.29
4347 8349 4.046938 ACTCCTATTAGCGACACATGTG 57.953 45.455 24.25 24.25 0.00 3.21
4438 8441 8.311836 TCTATGTTTAGTTTCCTTACACCTCAG 58.688 37.037 0.00 0.00 0.00 3.35
4472 8475 8.725256 AGACTATTAGTATTGGTCTAGGAGTCA 58.275 37.037 8.76 0.00 35.62 3.41
4495 8501 5.287674 GGGGGTGTTAAGGAGTATTAGAC 57.712 47.826 0.00 0.00 0.00 2.59
4542 8561 8.796475 AGTATTACACTTCTTCAAATGCAATGT 58.204 29.630 0.00 0.00 31.59 2.71
4591 8612 0.040336 GACGACACTCTCAAGACGCA 60.040 55.000 0.00 0.00 0.00 5.24
4671 8692 1.847328 TGCGGTGTCTTCCTCTGATA 58.153 50.000 0.00 0.00 0.00 2.15
4834 8869 3.056322 GGCCTCTCTTTGCATTGTTGATT 60.056 43.478 0.00 0.00 0.00 2.57
4907 8945 0.107643 TCATGCGAGTCCACCAAACA 59.892 50.000 0.00 0.00 0.00 2.83
4970 9010 8.246871 GTGCTTTCCTTCTAGCTTCATATTTTT 58.753 33.333 0.00 0.00 38.22 1.94
4982 9022 2.989840 CTCGTGTGTGCTTTCCTTCTAG 59.010 50.000 0.00 0.00 0.00 2.43
4983 9023 2.626266 TCTCGTGTGTGCTTTCCTTCTA 59.374 45.455 0.00 0.00 0.00 2.10
4985 9025 1.865865 TCTCGTGTGTGCTTTCCTTC 58.134 50.000 0.00 0.00 0.00 3.46
4988 9028 2.716398 GTTTTCTCGTGTGTGCTTTCC 58.284 47.619 0.00 0.00 0.00 3.13
4989 9029 2.029970 TCGTTTTCTCGTGTGTGCTTTC 59.970 45.455 0.00 0.00 0.00 2.62
4990 9030 2.004017 TCGTTTTCTCGTGTGTGCTTT 58.996 42.857 0.00 0.00 0.00 3.51
5065 9112 3.691609 GCTCCACTCCGATCTTGATTTTT 59.308 43.478 0.00 0.00 0.00 1.94
5066 9113 3.274288 GCTCCACTCCGATCTTGATTTT 58.726 45.455 0.00 0.00 0.00 1.82
5082 9136 2.033141 GTGCTGGCTTCTGCTCCA 59.967 61.111 0.00 0.00 39.59 3.86
5094 9148 3.864686 GTACATGGCCGCGTGCTG 61.865 66.667 17.07 11.79 40.92 4.41
5107 9161 2.357760 GCCTTTCCGCCACGTACA 60.358 61.111 0.00 0.00 0.00 2.90
5142 9255 1.299620 CTTTGCTGCTGCGTTTGCT 60.300 52.632 11.21 0.00 43.34 3.91
5244 9359 0.107312 AGCTGCTCCTTGCTACCATG 60.107 55.000 0.00 0.00 43.37 3.66
5245 9360 1.415659 CTAGCTGCTCCTTGCTACCAT 59.584 52.381 4.91 0.00 43.37 3.55
5247 9362 0.531753 GCTAGCTGCTCCTTGCTACC 60.532 60.000 4.91 0.00 43.37 3.18
5249 9364 0.176680 GTGCTAGCTGCTCCTTGCTA 59.823 55.000 17.23 0.00 43.37 3.49
5250 9365 1.078567 GTGCTAGCTGCTCCTTGCT 60.079 57.895 17.23 0.00 43.37 3.91
5256 9371 2.889503 CGCTGGTGCTAGCTGCTC 60.890 66.667 17.23 3.93 41.51 4.26
5261 9376 1.884926 GATGTCCGCTGGTGCTAGC 60.885 63.158 8.10 8.10 40.29 3.42
5276 9395 3.120979 CTGCCTGCACGCCATGATG 62.121 63.158 5.19 0.00 0.00 3.07
5294 9584 2.034812 AGGTCCGATCGAAGTTGATAGC 59.965 50.000 18.66 1.27 0.00 2.97
5300 9629 0.818296 CTCCAGGTCCGATCGAAGTT 59.182 55.000 18.66 0.00 0.00 2.66
5361 9936 1.522092 CGGCAAGCCTACTGGATCA 59.478 57.895 9.73 0.00 34.57 2.92
5405 9980 1.741401 CAAGATCGACGCCCAAGCA 60.741 57.895 0.00 0.00 39.83 3.91
5406 9981 0.811616 ATCAAGATCGACGCCCAAGC 60.812 55.000 0.00 0.00 0.00 4.01
5414 9989 0.652592 CGGTTGCCATCAAGATCGAC 59.347 55.000 0.00 0.00 31.93 4.20
5433 10008 2.743928 CTGTCTGCCGCCTCAACC 60.744 66.667 0.00 0.00 0.00 3.77
5449 10024 3.842923 CCTCCCGAGATGTGCGCT 61.843 66.667 9.73 0.00 0.00 5.92
5456 10031 2.841988 GCTGCTCCCTCCCGAGAT 60.842 66.667 0.00 0.00 30.97 2.75
5482 10057 1.005630 CCTCCCGATCCAATCTCGC 60.006 63.158 0.00 0.00 34.84 5.03
5552 10158 7.489435 GGCCTTCAATAAAGATAAGTTGCTTTC 59.511 37.037 0.00 0.00 37.12 2.62
5607 10215 7.549488 CCTATGTTTAGTTTCCTTACACCTCAG 59.451 40.741 0.00 0.00 0.00 3.35
5633 10242 8.808092 AGTATTGGTCTAGGAGTCATTATTAGC 58.192 37.037 0.00 0.00 0.00 3.09
5641 10250 7.943447 GGAGTATTAGTATTGGTCTAGGAGTCA 59.057 40.741 0.00 0.00 0.00 3.41
5675 10286 9.373603 AGTGCAATACATAAAGTTACGATACAA 57.626 29.630 0.00 0.00 0.00 2.41
5676 10287 8.936070 AGTGCAATACATAAAGTTACGATACA 57.064 30.769 0.00 0.00 0.00 2.29
5679 10290 9.162764 AGAAAGTGCAATACATAAAGTTACGAT 57.837 29.630 0.00 0.00 0.00 3.73
5680 10291 8.542497 AGAAAGTGCAATACATAAAGTTACGA 57.458 30.769 0.00 0.00 0.00 3.43
5681 10292 7.903431 GGAGAAAGTGCAATACATAAAGTTACG 59.097 37.037 0.00 0.00 0.00 3.18
5682 10293 8.947115 AGGAGAAAGTGCAATACATAAAGTTAC 58.053 33.333 0.00 0.00 0.00 2.50
5683 10294 9.515226 AAGGAGAAAGTGCAATACATAAAGTTA 57.485 29.630 0.00 0.00 0.00 2.24
5684 10295 8.409358 AAGGAGAAAGTGCAATACATAAAGTT 57.591 30.769 0.00 0.00 0.00 2.66
5685 10296 8.409358 AAAGGAGAAAGTGCAATACATAAAGT 57.591 30.769 0.00 0.00 0.00 2.66
5686 10297 8.514594 TGAAAGGAGAAAGTGCAATACATAAAG 58.485 33.333 0.00 0.00 0.00 1.85
5767 10378 2.631418 TGTCTTGATCGACGTCTTCC 57.369 50.000 14.70 2.59 36.71 3.46
5774 10385 2.279582 ACCGTGATGTCTTGATCGAC 57.720 50.000 0.00 0.00 34.52 4.20
5777 10388 3.119101 AGGTGTACCGTGATGTCTTGATC 60.119 47.826 0.00 0.00 42.08 2.92
5811 10422 5.926542 GCAATCAGTTATAGCCGAATCAGTA 59.073 40.000 0.00 0.00 0.00 2.74
5859 10470 6.245408 TGGCAGAACATGGATAAGTAAAAGT 58.755 36.000 0.00 0.00 0.00 2.66
5864 10475 4.136796 GCATGGCAGAACATGGATAAGTA 58.863 43.478 8.11 0.00 46.40 2.24
5947 10558 2.880890 ACTTCAAATGGACACTCACAGC 59.119 45.455 0.00 0.00 0.00 4.40
5963 10574 8.539770 TTTATGAAAACAAAACAAGCACTTCA 57.460 26.923 0.00 0.00 0.00 3.02
5978 10589 4.091365 GCACCGAGGCATTTTTATGAAAAC 59.909 41.667 0.00 0.00 37.56 2.43
5982 10593 2.441410 TGCACCGAGGCATTTTTATGA 58.559 42.857 0.00 0.00 39.25 2.15
6095 10717 9.104965 TCTTCATTGAACTTTCGAAAAGTAGAA 57.895 29.630 12.41 8.73 0.00 2.10
6156 10778 1.153745 CTAGTGACTCGGGCAGTGC 60.154 63.158 6.55 6.55 34.41 4.40
6193 10815 4.446719 GTGTCTACGTTCCAACCAGTAAAG 59.553 45.833 0.00 0.00 0.00 1.85
6246 10868 4.469227 TGGGGTTGCACATAATAAAAGCAT 59.531 37.500 0.00 0.00 34.87 3.79
6302 10924 1.379044 CAACATCCAGCTCCCCACC 60.379 63.158 0.00 0.00 0.00 4.61
6329 10951 5.093849 TCTATTTAGTGCCCAGTGTTACC 57.906 43.478 0.00 0.00 0.00 2.85
6357 10990 9.739276 TCAACTTTGATAGGACAAGTATTGAAT 57.261 29.630 0.00 0.00 39.54 2.57
6433 11067 1.081892 CAACTTCCACAGCCTCATCG 58.918 55.000 0.00 0.00 0.00 3.84
6469 11103 6.864165 CAGTAGTCTTTAGAACACTCCAGTTC 59.136 42.308 0.00 0.00 46.35 3.01
6530 11164 6.600882 ATCTGTTTCCATCAGAAAATGCTT 57.399 33.333 0.00 0.00 45.93 3.91
6531 11165 6.209986 TCAATCTGTTTCCATCAGAAAATGCT 59.790 34.615 0.00 0.00 45.93 3.79
6532 11166 6.392354 TCAATCTGTTTCCATCAGAAAATGC 58.608 36.000 0.00 0.00 45.93 3.56
6533 11167 8.997621 AATCAATCTGTTTCCATCAGAAAATG 57.002 30.769 0.00 0.00 45.93 2.32
6536 11170 9.246670 ACATAATCAATCTGTTTCCATCAGAAA 57.753 29.630 0.00 0.00 43.65 2.52
6537 11171 8.812513 ACATAATCAATCTGTTTCCATCAGAA 57.187 30.769 0.00 0.00 43.65 3.02
6538 11172 8.270030 AGACATAATCAATCTGTTTCCATCAGA 58.730 33.333 0.00 0.00 44.37 3.27
6539 11173 8.447924 AGACATAATCAATCTGTTTCCATCAG 57.552 34.615 0.00 0.00 0.00 2.90
6540 11174 8.812513 AAGACATAATCAATCTGTTTCCATCA 57.187 30.769 0.00 0.00 0.00 3.07
6542 11176 9.865321 CAAAAGACATAATCAATCTGTTTCCAT 57.135 29.630 0.00 0.00 0.00 3.41
6543 11177 8.306038 CCAAAAGACATAATCAATCTGTTTCCA 58.694 33.333 0.00 0.00 0.00 3.53
6544 11178 7.276438 GCCAAAAGACATAATCAATCTGTTTCC 59.724 37.037 0.00 0.00 0.00 3.13
6545 11179 8.031277 AGCCAAAAGACATAATCAATCTGTTTC 58.969 33.333 0.00 0.00 0.00 2.78
6546 11180 7.899973 AGCCAAAAGACATAATCAATCTGTTT 58.100 30.769 0.00 0.00 0.00 2.83
6547 11181 7.472334 AGCCAAAAGACATAATCAATCTGTT 57.528 32.000 0.00 0.00 0.00 3.16
6548 11182 7.472334 AAGCCAAAAGACATAATCAATCTGT 57.528 32.000 0.00 0.00 0.00 3.41
6587 11221 9.426837 CAATATGACCAACAAGAATTTCATTGT 57.573 29.630 0.00 4.23 41.28 2.71
6633 11268 7.329717 ACACGAAAAGAAACTAAAACAAATGCA 59.670 29.630 0.00 0.00 0.00 3.96
6634 11269 7.671827 ACACGAAAAGAAACTAAAACAAATGC 58.328 30.769 0.00 0.00 0.00 3.56
6655 11290 8.519492 ACTCAAAATTTCCATTGATTTACACG 57.481 30.769 0.00 0.00 35.20 4.49
6714 11351 1.814394 TGTACGGCGTACTCTGAACAT 59.186 47.619 39.53 7.56 39.49 2.71
6758 11395 9.947669 CTGGAAAGATAAAGAAGAAGCATTATG 57.052 33.333 0.00 0.00 0.00 1.90
6775 11412 9.421399 TCTTTCTTTAACTTTTCCTGGAAAGAT 57.579 29.630 20.25 13.39 40.92 2.40
6835 11472 7.182026 TCCATAAGGAAATCAGTAAGGTTCTCA 59.818 37.037 0.00 0.00 42.23 3.27
6886 11523 4.085312 CGCAAAACAGAAAATAAACACCCG 60.085 41.667 0.00 0.00 0.00 5.28
6896 11533 3.129462 TGTGTCATCCGCAAAACAGAAAA 59.871 39.130 0.00 0.00 0.00 2.29
6898 11535 2.293170 TGTGTCATCCGCAAAACAGAA 58.707 42.857 0.00 0.00 0.00 3.02
6905 11542 0.107643 TCACCTTGTGTCATCCGCAA 59.892 50.000 0.00 0.00 41.14 4.85
6910 11547 5.482908 ACTATTGACTCACCTTGTGTCATC 58.517 41.667 10.85 0.00 46.17 2.92
6991 11630 2.402564 TGGCTCAGGATTTCCTAGAGG 58.597 52.381 19.06 0.00 46.65 3.69
7026 11665 3.857157 ACCTAGAAACTCAACCAGCAA 57.143 42.857 0.00 0.00 0.00 3.91
7057 11696 3.355378 TCCGACGAAGGGAGTATGTTTA 58.645 45.455 0.00 0.00 0.00 2.01
7075 11714 3.670055 GTCAAACATGTCTTGCATTTCCG 59.330 43.478 0.00 0.00 35.19 4.30
7093 11732 5.581605 GTGCATTCAAGACTGAAAAGTCAA 58.418 37.500 8.47 0.00 44.64 3.18
7094 11733 4.260743 CGTGCATTCAAGACTGAAAAGTCA 60.261 41.667 8.47 0.00 44.64 3.41
7108 11749 9.853555 AAAATTATAGTCAAAATCGTGCATTCA 57.146 25.926 0.00 0.00 0.00 2.57
7173 11815 8.959548 TGTATGTCTTGCAATATTCATTTCTGT 58.040 29.630 0.00 0.00 0.00 3.41
7227 11935 5.221501 ACCACCAGTACGTGTAAAAGTACAT 60.222 40.000 11.13 0.00 43.98 2.29
7228 11936 4.099266 ACCACCAGTACGTGTAAAAGTACA 59.901 41.667 11.13 0.00 43.98 2.90
7229 11937 4.620982 ACCACCAGTACGTGTAAAAGTAC 58.379 43.478 0.00 1.20 42.42 2.73
7230 11938 4.556501 CGACCACCAGTACGTGTAAAAGTA 60.557 45.833 0.00 0.00 31.47 2.24
7231 11939 3.721035 GACCACCAGTACGTGTAAAAGT 58.279 45.455 0.00 0.00 31.47 2.66
7232 11940 2.727798 CGACCACCAGTACGTGTAAAAG 59.272 50.000 0.00 0.00 31.47 2.27
7233 11941 2.100584 ACGACCACCAGTACGTGTAAAA 59.899 45.455 0.00 0.00 37.58 1.52
7234 11942 1.680735 ACGACCACCAGTACGTGTAAA 59.319 47.619 0.00 0.00 37.58 2.01
7235 11943 1.317613 ACGACCACCAGTACGTGTAA 58.682 50.000 0.00 0.00 37.58 2.41
7236 11944 1.001487 CAACGACCACCAGTACGTGTA 60.001 52.381 0.00 0.00 38.92 2.90
7237 11945 0.249155 CAACGACCACCAGTACGTGT 60.249 55.000 0.00 0.00 38.92 4.49
7238 11946 0.031043 TCAACGACCACCAGTACGTG 59.969 55.000 0.00 0.00 38.92 4.49
7239 11947 0.031178 GTCAACGACCACCAGTACGT 59.969 55.000 0.00 0.00 40.64 3.57
7240 11948 0.313043 AGTCAACGACCACCAGTACG 59.687 55.000 0.00 0.00 32.18 3.67
7241 11949 1.779569 CAGTCAACGACCACCAGTAC 58.220 55.000 0.00 0.00 32.18 2.73
7242 11950 0.032952 GCAGTCAACGACCACCAGTA 59.967 55.000 0.00 0.00 32.18 2.74
7243 11951 1.227556 GCAGTCAACGACCACCAGT 60.228 57.895 0.00 0.00 32.18 4.00
7244 11952 0.813610 TTGCAGTCAACGACCACCAG 60.814 55.000 0.00 0.00 32.18 4.00
7245 11953 0.813610 CTTGCAGTCAACGACCACCA 60.814 55.000 0.00 0.00 32.18 4.17
7246 11954 1.941812 CTTGCAGTCAACGACCACC 59.058 57.895 0.00 0.00 32.18 4.61
7247 11955 1.279840 GCTTGCAGTCAACGACCAC 59.720 57.895 0.00 0.00 32.18 4.16
7248 11956 0.534877 ATGCTTGCAGTCAACGACCA 60.535 50.000 0.87 0.00 32.18 4.02
7249 11957 1.438651 TATGCTTGCAGTCAACGACC 58.561 50.000 0.87 0.00 32.18 4.79
7250 11958 3.747099 ATTATGCTTGCAGTCAACGAC 57.253 42.857 0.87 0.00 0.00 4.34
7251 11959 6.536941 TGTATAATTATGCTTGCAGTCAACGA 59.463 34.615 13.73 0.00 0.00 3.85
7252 11960 6.628856 GTGTATAATTATGCTTGCAGTCAACG 59.371 38.462 13.73 0.00 0.00 4.10
7253 11961 6.912591 GGTGTATAATTATGCTTGCAGTCAAC 59.087 38.462 13.73 1.87 0.00 3.18
7254 11962 6.828273 AGGTGTATAATTATGCTTGCAGTCAA 59.172 34.615 13.73 0.00 0.00 3.18
7255 11963 6.356556 AGGTGTATAATTATGCTTGCAGTCA 58.643 36.000 13.73 0.00 0.00 3.41
7256 11964 6.867662 AGGTGTATAATTATGCTTGCAGTC 57.132 37.500 13.73 0.00 0.00 3.51
7257 11965 7.773224 TGTAAGGTGTATAATTATGCTTGCAGT 59.227 33.333 13.73 0.00 0.00 4.40
7258 11966 8.153479 TGTAAGGTGTATAATTATGCTTGCAG 57.847 34.615 13.73 0.00 0.00 4.41
7259 11967 8.690203 ATGTAAGGTGTATAATTATGCTTGCA 57.310 30.769 13.73 10.00 0.00 4.08
7260 11968 9.965824 AAATGTAAGGTGTATAATTATGCTTGC 57.034 29.630 13.73 5.48 0.00 4.01
7274 11982 6.011981 TCCCTTTATCCAGAAATGTAAGGTGT 60.012 38.462 0.00 0.00 31.03 4.16
7284 11992 7.136885 TGGACTATACTCCCTTTATCCAGAAA 58.863 38.462 0.00 0.00 31.45 2.52
7292 12000 8.063153 TGTTACTGATGGACTATACTCCCTTTA 58.937 37.037 0.00 0.00 0.00 1.85
7293 12001 6.901300 TGTTACTGATGGACTATACTCCCTTT 59.099 38.462 0.00 0.00 0.00 3.11
7317 12025 5.794687 TTTCGCTACTGTACCATTCAATG 57.205 39.130 0.00 0.00 0.00 2.82
7327 12035 8.764287 CAACATATTCATGATTTCGCTACTGTA 58.236 33.333 0.00 0.00 35.96 2.74
7358 12066 4.827284 GGAAGGCCTAAAGCTATTTGCATA 59.173 41.667 5.16 0.00 45.94 3.14
7412 12120 7.345691 TGTTGAATCCCTTGAGCATATTAAGA 58.654 34.615 0.00 0.00 0.00 2.10
7567 12275 4.586421 TGGCATGGAGTTTGTGTTAATTCA 59.414 37.500 0.00 0.00 0.00 2.57
7584 12292 3.440173 AGGTCGAAGTGTTTTATGGCATG 59.560 43.478 10.98 0.00 0.00 4.06
7631 12339 6.258727 CCAGGTATTTATAAGTGTGTGCTGAG 59.741 42.308 0.00 0.00 0.00 3.35
7660 12368 4.850386 ACAACCCTGGGTATAGAAGTTCTT 59.150 41.667 20.91 0.00 33.12 2.52
7665 12373 4.837093 TGAACAACCCTGGGTATAGAAG 57.163 45.455 20.91 7.71 33.12 2.85
7715 12423 1.856802 CGGTTAGGGCCGTACATAAC 58.143 55.000 4.22 2.35 46.11 1.89
7825 12533 3.560453 GCATAGGTAGGGGTGTTCAAACA 60.560 47.826 0.00 0.00 36.38 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.