Multiple sequence alignment - TraesCS3B01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G339000 chr3B 100.000 5695 0 0 1 5695 545065345 545071039 0.000000e+00 10517.0
1 TraesCS3B01G339000 chr3B 97.849 93 1 1 5254 5345 621537373 621537465 5.910000e-35 159.0
2 TraesCS3B01G339000 chr3B 74.820 417 71 25 218 611 60360101 60359696 2.120000e-34 158.0
3 TraesCS3B01G339000 chr3B 88.889 81 7 2 5615 5694 39440165 39440244 1.310000e-16 99.0
4 TraesCS3B01G339000 chr3D 90.345 4930 312 94 76 4951 418726386 418731205 0.000000e+00 6316.0
5 TraesCS3B01G339000 chr3D 92.958 284 13 6 5352 5629 418731214 418731496 1.910000e-109 407.0
6 TraesCS3B01G339000 chr3D 88.462 312 28 6 4950 5258 554150109 554149803 2.510000e-98 370.0
7 TraesCS3B01G339000 chr3D 75.682 403 67 22 233 614 37959795 37959403 7.590000e-39 172.0
8 TraesCS3B01G339000 chr3D 74.876 402 74 19 218 607 312885233 312885619 2.120000e-34 158.0
9 TraesCS3B01G339000 chr3D 96.512 86 3 0 5262 5347 425066790 425066705 5.950000e-30 143.0
10 TraesCS3B01G339000 chr3D 91.781 73 5 1 2 74 418726283 418726354 3.630000e-17 100.0
11 TraesCS3B01G339000 chr3D 87.342 79 10 0 5614 5692 611689911 611689833 2.190000e-14 91.6
12 TraesCS3B01G339000 chr3D 100.000 46 0 0 2440 2485 418728635 418728680 1.020000e-12 86.1
13 TraesCS3B01G339000 chr3D 73.684 285 46 11 244 512 471964611 471964340 3.660000e-12 84.2
14 TraesCS3B01G339000 chr3D 89.231 65 5 2 9 73 111903056 111902994 4.730000e-11 80.5
15 TraesCS3B01G339000 chr3A 92.175 4128 223 45 851 4951 532451462 532447408 0.000000e+00 5742.0
16 TraesCS3B01G339000 chr3A 89.636 357 21 12 5345 5695 532447403 532447057 1.880000e-119 440.0
17 TraesCS3B01G339000 chr3A 89.610 77 8 0 5618 5694 578928679 578928603 1.310000e-16 99.0
18 TraesCS3B01G339000 chr3A 76.271 177 30 5 283 457 144444894 144444728 3.660000e-12 84.2
19 TraesCS3B01G339000 chr3A 86.667 75 8 2 1 74 635539743 635539670 1.320000e-11 82.4
20 TraesCS3B01G339000 chr7B 90.968 310 26 2 4950 5258 548114016 548113708 3.170000e-112 416.0
21 TraesCS3B01G339000 chr7B 77.477 333 55 10 278 598 380505997 380506321 1.260000e-41 182.0
22 TraesCS3B01G339000 chr1D 89.968 309 28 3 4950 5257 435798802 435799108 4.140000e-106 396.0
23 TraesCS3B01G339000 chr1D 91.083 157 14 0 1138 1294 423043280 423043124 4.470000e-51 213.0
24 TraesCS3B01G339000 chr1D 87.838 74 7 2 2 74 235581987 235581915 1.020000e-12 86.1
25 TraesCS3B01G339000 chr6B 89.172 314 30 4 4950 5262 67538823 67539133 6.920000e-104 388.0
26 TraesCS3B01G339000 chr6B 89.024 82 9 0 5614 5695 500829824 500829743 1.010000e-17 102.0
27 TraesCS3B01G339000 chr6B 89.394 66 5 2 2 66 717804099 717804035 1.320000e-11 82.4
28 TraesCS3B01G339000 chr6D 89.172 314 29 3 4950 5261 41542345 41542655 2.490000e-103 387.0
29 TraesCS3B01G339000 chr6D 77.468 395 61 20 230 611 45617880 45617501 1.610000e-50 211.0
30 TraesCS3B01G339000 chr6D 89.610 77 8 0 5618 5694 96739154 96739230 1.310000e-16 99.0
31 TraesCS3B01G339000 chr7D 90.278 288 25 3 4972 5258 265173603 265173318 1.940000e-99 374.0
32 TraesCS3B01G339000 chr7D 78.519 270 41 10 342 607 30484061 30484317 1.640000e-35 161.0
33 TraesCS3B01G339000 chr7D 91.429 70 5 1 5 74 386352503 386352571 1.690000e-15 95.3
34 TraesCS3B01G339000 chr7D 90.141 71 4 3 3 73 568036836 568036769 7.860000e-14 89.8
35 TraesCS3B01G339000 chr7D 88.525 61 6 1 6 66 448526378 448526319 7.920000e-09 73.1
36 TraesCS3B01G339000 chr7D 84.000 75 9 3 1 73 209835457 209835530 1.020000e-07 69.4
37 TraesCS3B01G339000 chr7D 100.000 29 0 0 285 313 136941188 136941216 3.000000e-03 54.7
38 TraesCS3B01G339000 chr4D 88.291 316 29 6 4950 5262 238640023 238640333 6.970000e-99 372.0
39 TraesCS3B01G339000 chr2D 87.419 310 38 1 4950 5258 445189682 445189991 7.020000e-94 355.0
40 TraesCS3B01G339000 chr2D 79.787 282 36 10 249 509 619937194 619937475 9.740000e-43 185.0
41 TraesCS3B01G339000 chr2D 90.476 105 9 1 5254 5357 32020814 32020710 2.770000e-28 137.0
42 TraesCS3B01G339000 chr2D 91.892 74 4 2 2 74 605383914 605383842 1.010000e-17 102.0
43 TraesCS3B01G339000 chr2D 90.278 72 6 1 4 74 592397473 592397544 6.080000e-15 93.5
44 TraesCS3B01G339000 chr2D 88.000 75 9 0 465 539 629422644 629422718 7.860000e-14 89.8
45 TraesCS3B01G339000 chr2D 88.000 75 7 2 1 74 448193294 448193367 2.830000e-13 87.9
46 TraesCS3B01G339000 chr2D 88.235 68 6 2 6 73 607085673 607085738 4.730000e-11 80.5
47 TraesCS3B01G339000 chr5D 86.817 311 36 3 4949 5258 27095355 27095661 5.460000e-90 342.0
48 TraesCS3B01G339000 chr5D 83.377 379 54 8 231 602 333989528 333989152 5.460000e-90 342.0
49 TraesCS3B01G339000 chr5D 89.773 264 23 4 5094 5355 231475437 231475698 9.140000e-88 335.0
50 TraesCS3B01G339000 chr5D 85.714 70 9 1 5 74 7927510 7927442 7.920000e-09 73.1
51 TraesCS3B01G339000 chr5D 84.000 75 10 2 1 74 501071147 501071220 2.850000e-08 71.3
52 TraesCS3B01G339000 chr5D 83.077 65 7 4 10 73 32318123 32318062 7.970000e-04 56.5
53 TraesCS3B01G339000 chr5A 77.860 542 82 16 78 611 435686681 435686170 9.270000e-78 302.0
54 TraesCS3B01G339000 chr4A 74.708 684 113 34 76 746 596828993 596829629 3.410000e-62 250.0
55 TraesCS3B01G339000 chr4A 91.753 97 8 0 5259 5355 544888290 544888194 9.950000e-28 135.0
56 TraesCS3B01G339000 chr1A 92.357 157 12 0 1138 1294 518974118 518973962 2.060000e-54 224.0
57 TraesCS3B01G339000 chr1A 96.471 85 3 0 5263 5347 67222686 67222602 2.140000e-29 141.0
58 TraesCS3B01G339000 chr1A 83.562 73 9 3 2 73 518726519 518726589 1.320000e-06 65.8
59 TraesCS3B01G339000 chr1A 84.848 66 8 2 2 66 527966514 527966578 1.320000e-06 65.8
60 TraesCS3B01G339000 chr1B 91.083 157 14 0 1138 1294 572295414 572295258 4.470000e-51 213.0
61 TraesCS3B01G339000 chr1B 76.648 364 69 14 258 614 341935425 341935071 2.710000e-43 187.0
62 TraesCS3B01G339000 chr1B 75.710 317 58 13 237 536 120036800 120037114 2.140000e-29 141.0
63 TraesCS3B01G339000 chr2B 93.000 100 7 0 5263 5362 111483691 111483592 4.600000e-31 147.0
64 TraesCS3B01G339000 chr2B 95.506 89 4 0 5260 5348 167084525 167084613 5.950000e-30 143.0
65 TraesCS3B01G339000 chr2B 88.889 81 8 1 5615 5694 492089774 492089854 1.310000e-16 99.0
66 TraesCS3B01G339000 chr4B 76.557 273 53 9 312 573 39296615 39296887 7.690000e-29 139.0
67 TraesCS3B01G339000 chr4B 89.610 77 8 0 5618 5694 165306625 165306549 1.310000e-16 99.0
68 TraesCS3B01G339000 chr2A 90.566 106 8 2 5245 5348 4139323 4139218 7.690000e-29 139.0
69 TraesCS3B01G339000 chr5B 88.608 79 9 0 5615 5693 418017448 418017526 4.700000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G339000 chr3B 545065345 545071039 5694 False 10517.000 10517 100.0000 1 5695 1 chr3B.!!$F2 5694
1 TraesCS3B01G339000 chr3D 418726283 418731496 5213 False 1727.275 6316 93.7710 2 5629 4 chr3D.!!$F2 5627
2 TraesCS3B01G339000 chr3A 532447057 532451462 4405 True 3091.000 5742 90.9055 851 5695 2 chr3A.!!$R4 4844
3 TraesCS3B01G339000 chr5A 435686170 435686681 511 True 302.000 302 77.8600 78 611 1 chr5A.!!$R1 533
4 TraesCS3B01G339000 chr4A 596828993 596829629 636 False 250.000 250 74.7080 76 746 1 chr4A.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 471 0.605589 GCCTATCCCAGAGTCCATCG 59.394 60.000 0.00 0.0 0.00 3.84 F
1304 1390 0.031721 GGCGAGGTATTCTACACCCG 59.968 60.000 0.00 0.0 36.67 5.28 F
1381 1483 0.037326 AGCACGAGGAATTTCTGCGA 60.037 50.000 14.89 0.0 32.92 5.10 F
1649 1751 0.179045 AGTTTCTGCTGGTTGCTCGT 60.179 50.000 0.00 0.0 43.37 4.18 F
1650 1752 0.235926 GTTTCTGCTGGTTGCTCGTC 59.764 55.000 0.00 0.0 43.37 4.20 F
2816 2959 1.683385 GGCCAATTGTCATTCCCTAGC 59.317 52.381 4.43 0.0 0.00 3.42 F
3767 3912 0.673437 CAATGGTCAAACGCCTTGGT 59.327 50.000 0.00 0.0 35.56 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1464 0.037326 TCGCAGAAATTCCTCGTGCT 60.037 50.000 3.97 0.0 31.74 4.40 R
2934 3078 1.066143 AGGTCTAACTGGACATTGCCG 60.066 52.381 0.00 0.0 37.91 5.69 R
2972 3116 1.347050 CCAGAGCCAGATACCATGAGG 59.653 57.143 0.00 0.0 42.21 3.86 R
3305 3450 2.425312 CTCAGGCGTCACATACTCTCTT 59.575 50.000 0.00 0.0 0.00 2.85 R
3408 3553 4.772624 AGCAGTACACAGGAGTAATCAAGA 59.227 41.667 0.00 0.0 0.00 3.02 R
3865 4013 0.396417 AGAGCTCTCCTGCACGGTAT 60.396 55.000 11.45 0.0 34.99 2.73 R
5380 5544 0.965866 TGGAGTCAGTCAGCCTACCG 60.966 60.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.341156 CCACATCCACCTCCTCCCTC 61.341 65.000 0.00 0.00 0.00 4.30
42 43 0.900647 CACCTCCTCCCTCTTCGTGT 60.901 60.000 0.00 0.00 0.00 4.49
45 46 0.961358 CTCCTCCCTCTTCGTGTCGT 60.961 60.000 0.00 0.00 0.00 4.34
52 53 0.791238 CTCTTCGTGTCGTCAGCTCG 60.791 60.000 0.00 0.00 0.00 5.03
60 61 2.185350 CGTCAGCTCGAGCCCATT 59.815 61.111 32.94 12.76 43.38 3.16
67 68 1.450312 CTCGAGCCCATTCCACCAC 60.450 63.158 0.00 0.00 0.00 4.16
74 75 0.995024 CCCATTCCACCACCTCTCTT 59.005 55.000 0.00 0.00 0.00 2.85
111 142 2.632028 AGACCACCTATGCTATGCTCAG 59.368 50.000 0.00 0.00 0.00 3.35
148 179 3.954258 TCTACATTGAGCAGGAGATTCGA 59.046 43.478 0.00 0.00 0.00 3.71
151 182 0.897621 TTGAGCAGGAGATTCGAGCA 59.102 50.000 0.00 0.00 0.00 4.26
235 266 4.888325 CCAGAGGCGGGGGAGGAT 62.888 72.222 0.00 0.00 0.00 3.24
236 267 3.554342 CAGAGGCGGGGGAGGATG 61.554 72.222 0.00 0.00 0.00 3.51
237 268 3.767268 AGAGGCGGGGGAGGATGA 61.767 66.667 0.00 0.00 0.00 2.92
238 269 3.237741 GAGGCGGGGGAGGATGAG 61.238 72.222 0.00 0.00 0.00 2.90
239 270 4.888325 AGGCGGGGGAGGATGAGG 62.888 72.222 0.00 0.00 0.00 3.86
240 271 4.880426 GGCGGGGGAGGATGAGGA 62.880 72.222 0.00 0.00 0.00 3.71
241 272 3.237741 GCGGGGGAGGATGAGGAG 61.238 72.222 0.00 0.00 0.00 3.69
242 273 3.237741 CGGGGGAGGATGAGGAGC 61.238 72.222 0.00 0.00 0.00 4.70
243 274 2.040464 GGGGGAGGATGAGGAGCA 60.040 66.667 0.00 0.00 0.00 4.26
244 275 2.146061 GGGGGAGGATGAGGAGCAG 61.146 68.421 0.00 0.00 0.00 4.24
245 276 2.817056 GGGGAGGATGAGGAGCAGC 61.817 68.421 0.00 0.00 0.00 5.25
251 282 1.446791 GATGAGGAGCAGCCAGAGG 59.553 63.158 0.00 0.00 40.02 3.69
252 283 2.042404 GATGAGGAGCAGCCAGAGGG 62.042 65.000 0.00 0.00 40.02 4.30
318 366 4.346049 CGAAGGAGGAGGAGCTGA 57.654 61.111 0.00 0.00 0.00 4.26
405 453 1.424493 CGAGATGGCGGAGAAACAGC 61.424 60.000 0.00 0.00 38.89 4.40
423 471 0.605589 GCCTATCCCAGAGTCCATCG 59.394 60.000 0.00 0.00 0.00 3.84
436 484 0.683412 TCCATCGAGGATGAGGCATG 59.317 55.000 0.00 0.00 43.07 4.06
611 674 3.906660 GTGGACATCACCGACAAGA 57.093 52.632 0.00 0.00 40.39 3.02
612 675 2.163818 GTGGACATCACCGACAAGAA 57.836 50.000 0.00 0.00 40.39 2.52
613 676 2.069273 GTGGACATCACCGACAAGAAG 58.931 52.381 0.00 0.00 40.39 2.85
614 677 1.001974 TGGACATCACCGACAAGAAGG 59.998 52.381 0.00 0.00 0.00 3.46
621 684 4.627284 TCACCGACAAGAAGGGATAAAA 57.373 40.909 0.00 0.00 0.00 1.52
665 736 3.987220 GCTGGATTTTATTGTTTGCACGT 59.013 39.130 0.00 0.00 0.00 4.49
672 743 8.119845 GGATTTTATTGTTTGCACGTTTTTCTT 58.880 29.630 0.00 0.00 0.00 2.52
677 748 5.508124 TGTTTGCACGTTTTTCTTTGAAG 57.492 34.783 0.00 0.00 0.00 3.02
687 758 6.262273 ACGTTTTTCTTTGAAGGATAGCAGAA 59.738 34.615 0.00 0.00 0.00 3.02
825 910 4.773149 ACTTGTACCTCTTCTACCCTTCAG 59.227 45.833 0.00 0.00 0.00 3.02
832 917 4.238514 CTCTTCTACCCTTCAGTTTCACG 58.761 47.826 0.00 0.00 0.00 4.35
840 925 3.491964 CCCTTCAGTTTCACGTGTAGACA 60.492 47.826 16.51 0.00 0.00 3.41
896 981 1.100510 GGGATAAAACTGGAACGGGC 58.899 55.000 0.00 0.00 40.47 6.13
897 982 1.614850 GGGATAAAACTGGAACGGGCA 60.615 52.381 0.00 0.00 40.47 5.36
1302 1388 1.027357 TCGGCGAGGTATTCTACACC 58.973 55.000 4.99 0.00 36.22 4.16
1304 1390 0.031721 GGCGAGGTATTCTACACCCG 59.968 60.000 0.00 0.00 36.67 5.28
1344 1430 2.863153 GCAATGCTTCGCTCGTGT 59.137 55.556 0.00 0.00 0.00 4.49
1351 1437 1.991430 CTTCGCTCGTGTGATTCGG 59.009 57.895 1.04 0.00 32.25 4.30
1362 1464 0.669318 GTGATTCGGTCCTGCGTTCA 60.669 55.000 0.00 0.00 0.00 3.18
1380 1482 0.095935 CAGCACGAGGAATTTCTGCG 59.904 55.000 0.00 0.00 32.92 5.18
1381 1483 0.037326 AGCACGAGGAATTTCTGCGA 60.037 50.000 14.89 0.00 32.92 5.10
1382 1484 0.371645 GCACGAGGAATTTCTGCGAG 59.628 55.000 14.89 9.94 0.00 5.03
1383 1485 1.996292 CACGAGGAATTTCTGCGAGA 58.004 50.000 14.89 0.00 0.00 4.04
1384 1486 1.656095 CACGAGGAATTTCTGCGAGAC 59.344 52.381 14.89 0.00 0.00 3.36
1385 1487 1.272490 ACGAGGAATTTCTGCGAGACA 59.728 47.619 14.89 0.00 0.00 3.41
1395 1497 2.999507 CTGCGAGACAGTAGAGTGTT 57.000 50.000 0.00 0.00 41.86 3.32
1396 1498 2.857618 CTGCGAGACAGTAGAGTGTTC 58.142 52.381 0.00 0.00 41.86 3.18
1397 1499 1.197036 TGCGAGACAGTAGAGTGTTCG 59.803 52.381 13.22 13.22 35.70 3.95
1398 1500 1.884756 CGAGACAGTAGAGTGTTCGC 58.115 55.000 8.23 0.00 30.21 4.70
1399 1501 1.465387 CGAGACAGTAGAGTGTTCGCT 59.535 52.381 8.23 0.00 30.21 4.93
1400 1502 2.095668 CGAGACAGTAGAGTGTTCGCTT 60.096 50.000 8.23 0.00 30.21 4.68
1401 1503 3.609644 CGAGACAGTAGAGTGTTCGCTTT 60.610 47.826 8.23 0.00 30.21 3.51
1402 1504 3.903360 AGACAGTAGAGTGTTCGCTTTC 58.097 45.455 0.00 0.00 0.00 2.62
1403 1505 2.657372 GACAGTAGAGTGTTCGCTTTCG 59.343 50.000 0.00 0.00 0.00 3.46
1407 1509 1.204312 GAGTGTTCGCTTTCGGTGC 59.796 57.895 0.00 0.00 36.13 5.01
1408 1510 1.222115 GAGTGTTCGCTTTCGGTGCT 61.222 55.000 0.00 0.00 36.13 4.40
1522 1624 1.956170 CATGGTGCTCGGCGATACC 60.956 63.158 26.90 26.90 0.00 2.73
1528 1630 2.808315 CTCGGCGATACCTGCACT 59.192 61.111 11.27 0.00 35.61 4.40
1603 1705 1.073763 CCCATGGAACCTCTGAACACA 59.926 52.381 15.22 0.00 0.00 3.72
1648 1750 0.947244 AAGTTTCTGCTGGTTGCTCG 59.053 50.000 0.00 0.00 43.37 5.03
1649 1751 0.179045 AGTTTCTGCTGGTTGCTCGT 60.179 50.000 0.00 0.00 43.37 4.18
1650 1752 0.235926 GTTTCTGCTGGTTGCTCGTC 59.764 55.000 0.00 0.00 43.37 4.20
1665 1769 3.119245 TGCTCGTCTACAGATTTACCACC 60.119 47.826 0.00 0.00 0.00 4.61
1669 1773 6.682113 GCTCGTCTACAGATTTACCACCATTA 60.682 42.308 0.00 0.00 0.00 1.90
1686 1790 5.645067 CACCATTAGCTTGTCATCTTTGAGA 59.355 40.000 0.00 0.00 30.85 3.27
1692 1796 3.683822 GCTTGTCATCTTTGAGAGACTGG 59.316 47.826 0.00 0.00 37.17 4.00
1710 1814 9.403583 AGAGACTGGTTTAGTAAGAAGAGATAG 57.596 37.037 0.00 0.00 40.53 2.08
1752 1856 7.173047 AGTTTGGATTTGAACCAATGCAAATAC 59.827 33.333 16.29 0.00 45.09 1.89
1762 1866 8.194104 TGAACCAATGCAAATACGCTAATTTAT 58.806 29.630 0.00 0.00 0.00 1.40
1851 1955 6.870439 TGACAAGTGTTGATAGAGATGACTTG 59.130 38.462 0.00 0.00 42.81 3.16
1981 2090 7.011857 GTGCTAAAGATTTCTGGACTTCCTATG 59.988 40.741 0.00 0.00 36.82 2.23
1996 2105 2.158957 TCCTATGCAGGAGCTAAAACCG 60.159 50.000 0.00 0.00 46.58 4.44
2020 2129 5.140454 GGGATATTGGTGGAATGCTTAACT 58.860 41.667 0.00 0.00 0.00 2.24
2155 2264 1.867233 CGAGCAGGGTAATTTGATCCG 59.133 52.381 0.00 0.00 0.00 4.18
2156 2265 2.483013 CGAGCAGGGTAATTTGATCCGA 60.483 50.000 0.00 0.00 0.00 4.55
2160 2269 3.882888 GCAGGGTAATTTGATCCGATGAA 59.117 43.478 0.00 0.00 0.00 2.57
2173 2282 3.213506 TCCGATGAATTTAGTGGCATGG 58.786 45.455 0.00 0.00 0.00 3.66
2176 2285 3.709987 GATGAATTTAGTGGCATGGCAC 58.290 45.455 37.59 37.59 0.00 5.01
2215 2324 8.947055 ATTGTAAAATTGAAGTTTGAAGCACT 57.053 26.923 0.35 0.00 0.00 4.40
2225 2334 9.555727 TTGAAGTTTGAAGCACTAATAACTACT 57.444 29.630 0.00 0.00 0.00 2.57
2293 2402 3.587797 TCCGGAACAGCTAAAGTACAG 57.412 47.619 0.00 0.00 0.00 2.74
2343 2453 9.035890 TCTTGTTTACTTCTGATATTCTCCTCA 57.964 33.333 0.00 0.00 0.00 3.86
2355 2465 9.770097 CTGATATTCTCCTCAAAGCTATACAAA 57.230 33.333 0.00 0.00 0.00 2.83
2380 2490 6.440965 AGGCTAGAGGTTTGAAACACTATAGT 59.559 38.462 19.52 0.00 31.74 2.12
2382 2492 7.705752 GGCTAGAGGTTTGAAACACTATAGTAC 59.294 40.741 19.52 13.60 31.74 2.73
2383 2493 7.431668 GCTAGAGGTTTGAAACACTATAGTACG 59.568 40.741 19.52 0.00 31.74 3.67
2534 2671 5.462068 TGACACTTGAATCAGTTCTACAACG 59.538 40.000 0.00 0.00 37.61 4.10
2692 2835 5.598416 TGTGTACCATATCAGAGACCTTG 57.402 43.478 0.00 0.00 0.00 3.61
2816 2959 1.683385 GGCCAATTGTCATTCCCTAGC 59.317 52.381 4.43 0.00 0.00 3.42
2845 2988 3.277715 TGTCTTCAGTTTGCATGACACA 58.722 40.909 0.00 0.00 30.78 3.72
2869 3012 8.389603 ACAGTGTGTTTTATTTGAATTTTGCTG 58.610 29.630 0.00 0.00 0.00 4.41
2951 3095 3.410631 TTTCGGCAATGTCCAGTTAGA 57.589 42.857 0.00 0.00 0.00 2.10
2955 3099 2.633488 GGCAATGTCCAGTTAGACCTC 58.367 52.381 0.00 0.00 35.83 3.85
2960 3104 4.920640 ATGTCCAGTTAGACCTCGTATG 57.079 45.455 0.00 0.00 35.83 2.39
2962 3106 3.693085 TGTCCAGTTAGACCTCGTATGTC 59.307 47.826 0.00 0.00 35.83 3.06
2963 3107 3.946558 GTCCAGTTAGACCTCGTATGTCT 59.053 47.826 8.74 8.74 44.85 3.41
2965 3109 4.639310 TCCAGTTAGACCTCGTATGTCTTC 59.361 45.833 8.95 4.86 42.78 2.87
2966 3110 4.641094 CCAGTTAGACCTCGTATGTCTTCT 59.359 45.833 8.95 6.49 42.78 2.85
2972 3116 5.956642 AGACCTCGTATGTCTTCTTTCTTC 58.043 41.667 0.00 0.00 40.06 2.87
2995 3140 2.435805 TCATGGTATCTGGCTCTGGAAC 59.564 50.000 0.00 0.00 0.00 3.62
2996 3141 1.951209 TGGTATCTGGCTCTGGAACA 58.049 50.000 0.00 0.00 0.00 3.18
3006 3151 5.028549 TGGCTCTGGAACAATCTCTTATC 57.971 43.478 0.00 0.00 38.70 1.75
3150 3295 4.682860 GTGAAACAAGCCATGATTGACTTG 59.317 41.667 15.07 12.01 43.99 3.16
3214 3359 1.846439 AGGTTAGCCCTGTATGCACAT 59.154 47.619 0.00 0.00 44.08 3.21
3240 3385 9.685828 TTTTAACTTTGGTGTAGCATGTAATTC 57.314 29.630 0.00 0.00 0.00 2.17
3244 3389 8.574251 ACTTTGGTGTAGCATGTAATTCAATA 57.426 30.769 0.00 0.00 0.00 1.90
3245 3390 9.189156 ACTTTGGTGTAGCATGTAATTCAATAT 57.811 29.630 0.00 0.00 0.00 1.28
3248 3393 8.978874 TGGTGTAGCATGTAATTCAATATTCT 57.021 30.769 0.00 0.00 0.00 2.40
3305 3450 5.583495 CCAACAGAAAAACATTTGACGGTA 58.417 37.500 0.00 0.00 0.00 4.02
3396 3541 1.848652 TGCTAGTGGACCTCTGGTAC 58.151 55.000 6.32 0.00 35.25 3.34
3408 3553 2.094182 CCTCTGGTACGTGCTACATGTT 60.094 50.000 2.30 0.00 35.12 2.71
3409 3554 3.179830 CTCTGGTACGTGCTACATGTTC 58.820 50.000 2.30 0.00 35.12 3.18
3495 3640 6.721208 TCTGGAAATATTATCTTGATTGCCCC 59.279 38.462 0.00 0.00 28.14 5.80
3500 3645 3.386932 TTATCTTGATTGCCCCTGCTT 57.613 42.857 0.00 0.00 38.71 3.91
3587 3732 4.263506 GGGCATGTAGTTCCATAATAGCCT 60.264 45.833 0.00 0.00 38.43 4.58
3630 3775 0.770557 AACAGGTGGACAAGCCCCTA 60.771 55.000 0.00 0.00 36.08 3.53
3639 3784 4.520492 GTGGACAAGCCCCTATTTCATATG 59.480 45.833 0.00 0.00 34.97 1.78
3767 3912 0.673437 CAATGGTCAAACGCCTTGGT 59.327 50.000 0.00 0.00 35.56 3.67
3837 3985 5.173774 TGCATGAACTCACTTTCTTTGTC 57.826 39.130 0.00 0.00 0.00 3.18
3846 3994 3.311322 TCACTTTCTTTGTCGTGCGATTT 59.689 39.130 0.00 0.00 0.00 2.17
3865 4013 1.124780 TTTGTCAGGTCCGGTCTTCA 58.875 50.000 0.00 0.28 0.00 3.02
4033 4183 3.948004 AAAAGCGGGGGCGGCATAA 62.948 57.895 12.47 0.00 32.04 1.90
4034 4184 3.731766 AAAGCGGGGGCGGCATAAT 62.732 57.895 12.47 0.00 32.04 1.28
4035 4185 4.643387 AGCGGGGGCGGCATAATC 62.643 66.667 12.47 0.00 32.04 1.75
4128 4279 1.050988 ACTGTAGATGCCCGGATGCT 61.051 55.000 0.73 0.00 0.00 3.79
4194 4346 6.491714 AAGCTATTCATGAGTAGTCCACAT 57.508 37.500 22.07 2.16 0.00 3.21
4195 4347 5.851720 AGCTATTCATGAGTAGTCCACATG 58.148 41.667 22.07 0.00 41.55 3.21
4196 4348 5.600069 AGCTATTCATGAGTAGTCCACATGA 59.400 40.000 22.07 0.00 45.27 3.07
4201 4353 4.956075 TCATGAGTAGTCCACATGAAGCTA 59.044 41.667 0.00 0.00 44.42 3.32
4210 4362 2.224475 CCACATGAAGCTATCCCTCTGG 60.224 54.545 0.00 0.00 0.00 3.86
4211 4363 1.419387 ACATGAAGCTATCCCTCTGGC 59.581 52.381 0.00 0.00 0.00 4.85
4265 4417 1.405526 GGAGAACGCATCCAGCACTTA 60.406 52.381 0.00 0.00 46.13 2.24
4271 4423 1.739466 CGCATCCAGCACTTACATGTT 59.261 47.619 2.30 0.00 46.13 2.71
4534 4694 9.550811 GATGCTTTGAATTTGGATTTGAAATTC 57.449 29.630 0.00 0.00 44.67 2.17
4704 4866 3.242518 CAAACTCGAGAGCACGTGATAA 58.757 45.455 22.23 0.00 34.70 1.75
4733 4896 3.230134 TGGAATGTGTTTTAGGCTTGCT 58.770 40.909 0.00 0.00 0.00 3.91
4745 4908 8.085909 TGTTTTAGGCTTGCTTTTATCTTTACC 58.914 33.333 0.00 0.00 0.00 2.85
4808 4971 6.568844 CGGTTTCTTTAATGGAAATGGACGAA 60.569 38.462 0.00 0.00 35.55 3.85
4818 4981 4.000988 GGAAATGGACGAAGAGCTTGTTA 58.999 43.478 0.00 0.00 0.00 2.41
4856 5019 8.290277 AGGTTCTTAATAATCCTCTGGTAGAGA 58.710 37.037 7.39 0.00 45.07 3.10
4862 5025 1.835494 TCCTCTGGTAGAGAACGTGG 58.165 55.000 7.39 0.00 45.07 4.94
4867 5030 3.489355 TCTGGTAGAGAACGTGGTACAA 58.511 45.455 0.00 0.00 44.16 2.41
4880 5043 6.051646 ACGTGGTACAATGTTAACAAACTC 57.948 37.500 13.23 0.00 44.16 3.01
4886 5049 9.575783 TGGTACAATGTTAACAAACTCTTTTTC 57.424 29.630 13.23 0.00 31.92 2.29
4951 5114 9.906660 TGTACAGATCAACCAAAAATGAATTAC 57.093 29.630 0.00 0.00 0.00 1.89
4955 5118 9.565213 CAGATCAACCAAAAATGAATTACTCTC 57.435 33.333 0.00 0.00 0.00 3.20
4956 5119 9.525826 AGATCAACCAAAAATGAATTACTCTCT 57.474 29.630 0.00 0.00 0.00 3.10
4957 5120 9.780413 GATCAACCAAAAATGAATTACTCTCTC 57.220 33.333 0.00 0.00 0.00 3.20
4958 5121 8.924511 TCAACCAAAAATGAATTACTCTCTCT 57.075 30.769 0.00 0.00 0.00 3.10
4959 5122 8.786898 TCAACCAAAAATGAATTACTCTCTCTG 58.213 33.333 0.00 0.00 0.00 3.35
4960 5123 8.571336 CAACCAAAAATGAATTACTCTCTCTGT 58.429 33.333 0.00 0.00 0.00 3.41
4961 5124 8.697507 ACCAAAAATGAATTACTCTCTCTGTT 57.302 30.769 0.00 0.00 0.00 3.16
4962 5125 8.787852 ACCAAAAATGAATTACTCTCTCTGTTC 58.212 33.333 0.00 0.00 0.00 3.18
4963 5126 8.239998 CCAAAAATGAATTACTCTCTCTGTTCC 58.760 37.037 0.00 0.00 0.00 3.62
4964 5127 9.007901 CAAAAATGAATTACTCTCTCTGTTCCT 57.992 33.333 0.00 0.00 0.00 3.36
4965 5128 8.785329 AAAATGAATTACTCTCTCTGTTCCTC 57.215 34.615 0.00 0.00 0.00 3.71
4966 5129 7.487822 AATGAATTACTCTCTCTGTTCCTCA 57.512 36.000 0.00 0.00 0.00 3.86
4967 5130 6.918067 TGAATTACTCTCTCTGTTCCTCAA 57.082 37.500 0.00 0.00 0.00 3.02
4968 5131 7.487822 TGAATTACTCTCTCTGTTCCTCAAT 57.512 36.000 0.00 0.00 0.00 2.57
4969 5132 8.595362 TGAATTACTCTCTCTGTTCCTCAATA 57.405 34.615 0.00 0.00 0.00 1.90
4970 5133 9.206690 TGAATTACTCTCTCTGTTCCTCAATAT 57.793 33.333 0.00 0.00 0.00 1.28
4973 5136 9.829507 ATTACTCTCTCTGTTCCTCAATATTTG 57.170 33.333 0.00 0.00 0.00 2.32
4974 5137 7.251321 ACTCTCTCTGTTCCTCAATATTTGT 57.749 36.000 0.00 0.00 0.00 2.83
4975 5138 7.327214 ACTCTCTCTGTTCCTCAATATTTGTC 58.673 38.462 0.00 0.00 0.00 3.18
4976 5139 7.180051 ACTCTCTCTGTTCCTCAATATTTGTCT 59.820 37.037 0.00 0.00 0.00 3.41
4977 5140 7.911651 TCTCTCTGTTCCTCAATATTTGTCTT 58.088 34.615 0.00 0.00 0.00 3.01
4978 5141 8.037758 TCTCTCTGTTCCTCAATATTTGTCTTC 58.962 37.037 0.00 0.00 0.00 2.87
4979 5142 7.106239 TCTCTGTTCCTCAATATTTGTCTTCC 58.894 38.462 0.00 0.00 0.00 3.46
4980 5143 7.020827 TCTGTTCCTCAATATTTGTCTTCCT 57.979 36.000 0.00 0.00 0.00 3.36
4981 5144 8.146053 TCTGTTCCTCAATATTTGTCTTCCTA 57.854 34.615 0.00 0.00 0.00 2.94
4982 5145 8.602424 TCTGTTCCTCAATATTTGTCTTCCTAA 58.398 33.333 0.00 0.00 0.00 2.69
4983 5146 9.231297 CTGTTCCTCAATATTTGTCTTCCTAAA 57.769 33.333 0.00 0.00 0.00 1.85
4984 5147 9.231297 TGTTCCTCAATATTTGTCTTCCTAAAG 57.769 33.333 0.00 0.00 0.00 1.85
4985 5148 9.449719 GTTCCTCAATATTTGTCTTCCTAAAGA 57.550 33.333 0.00 0.00 39.22 2.52
4995 5158 9.971922 ATTTGTCTTCCTAAAGATTTCAACAAG 57.028 29.630 0.00 0.00 43.26 3.16
4996 5159 8.519799 TTGTCTTCCTAAAGATTTCAACAAGT 57.480 30.769 0.00 0.00 43.26 3.16
4997 5160 7.930217 TGTCTTCCTAAAGATTTCAACAAGTG 58.070 34.615 0.00 0.00 43.26 3.16
4998 5161 7.773224 TGTCTTCCTAAAGATTTCAACAAGTGA 59.227 33.333 0.00 0.00 43.26 3.41
4999 5162 8.070769 GTCTTCCTAAAGATTTCAACAAGTGAC 58.929 37.037 0.00 0.00 43.26 3.67
5000 5163 7.993183 TCTTCCTAAAGATTTCAACAAGTGACT 59.007 33.333 0.00 0.00 36.59 3.41
5001 5164 9.273016 CTTCCTAAAGATTTCAACAAGTGACTA 57.727 33.333 0.00 0.00 33.05 2.59
5002 5165 8.603242 TCCTAAAGATTTCAACAAGTGACTAC 57.397 34.615 0.00 0.00 35.39 2.73
5003 5166 8.208224 TCCTAAAGATTTCAACAAGTGACTACA 58.792 33.333 0.00 0.00 35.39 2.74
5004 5167 9.003658 CCTAAAGATTTCAACAAGTGACTACAT 57.996 33.333 0.00 0.00 35.39 2.29
5007 5170 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
5008 5171 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5009 5172 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5010 5173 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5011 5174 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5012 5175 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5013 5176 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5014 5177 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5015 5178 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5016 5179 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5017 5180 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5018 5181 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5019 5182 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5020 5183 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5021 5184 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5022 5185 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5023 5186 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5024 5187 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5025 5188 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5026 5189 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5027 5190 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5028 5191 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5029 5192 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5030 5193 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5066 5229 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
5068 5231 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
5069 5232 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
5070 5233 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
5071 5234 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
5072 5235 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
5073 5236 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
5074 5237 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
5075 5238 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
5076 5239 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
5077 5240 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
5078 5241 7.441157 TCCGTATGTGATAGTCCATTTGAAATC 59.559 37.037 0.00 0.00 0.00 2.17
5079 5242 7.442364 CCGTATGTGATAGTCCATTTGAAATCT 59.558 37.037 0.00 0.00 0.00 2.40
5080 5243 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
5081 5244 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
5084 5247 9.958180 TGTGATAGTCCATTTGAAATCTCTAAA 57.042 29.630 0.00 0.00 0.00 1.85
5090 5253 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
5091 5254 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
5101 5264 9.674068 AATCTCTAAAAAGACAAATACTCCCTC 57.326 33.333 0.00 0.00 0.00 4.30
5102 5265 7.621796 TCTCTAAAAAGACAAATACTCCCTCC 58.378 38.462 0.00 0.00 0.00 4.30
5103 5266 6.403878 TCTAAAAAGACAAATACTCCCTCCG 58.596 40.000 0.00 0.00 0.00 4.63
5104 5267 4.635699 AAAAGACAAATACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
5105 5268 4.635699 AAAGACAAATACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
5106 5269 3.889520 AGACAAATACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
5107 5270 2.500504 AGACAAATACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
5108 5271 1.558294 ACAAATACTCCCTCCGTTCCC 59.442 52.381 0.00 0.00 0.00 3.97
5109 5272 1.557832 CAAATACTCCCTCCGTTCCCA 59.442 52.381 0.00 0.00 0.00 4.37
5110 5273 1.961133 AATACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
5111 5274 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5112 5275 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
5113 5276 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5114 5277 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5115 5278 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
5116 5279 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
5117 5280 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
5118 5281 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
5119 5282 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
5120 5283 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
5121 5284 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
5122 5285 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
5123 5286 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
5124 5287 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
5125 5288 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
5126 5289 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
5127 5290 7.415206 CCGTTCCCAAATATTTGTCTTTCTAGG 60.415 40.741 23.24 15.51 36.45 3.02
5128 5291 7.258441 GTTCCCAAATATTTGTCTTTCTAGGC 58.742 38.462 23.24 3.57 36.45 3.93
5129 5292 6.489603 TCCCAAATATTTGTCTTTCTAGGCA 58.510 36.000 23.24 5.94 36.45 4.75
5130 5293 7.125391 TCCCAAATATTTGTCTTTCTAGGCAT 58.875 34.615 23.24 0.00 35.56 4.40
5131 5294 7.619302 TCCCAAATATTTGTCTTTCTAGGCATT 59.381 33.333 23.24 0.00 35.56 3.56
5132 5295 8.260114 CCCAAATATTTGTCTTTCTAGGCATTT 58.740 33.333 23.24 0.00 35.56 2.32
5133 5296 9.305925 CCAAATATTTGTCTTTCTAGGCATTTC 57.694 33.333 23.24 0.00 35.56 2.17
5134 5297 9.859427 CAAATATTTGTCTTTCTAGGCATTTCA 57.141 29.630 18.32 0.00 35.56 2.69
5138 5301 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
5139 5302 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
5140 5303 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
5141 5304 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
5142 5305 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
5143 5306 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
5144 5307 3.689161 TCTAGGCATTTCAAATGGACACG 59.311 43.478 12.14 0.00 0.00 4.49
5145 5308 2.513753 AGGCATTTCAAATGGACACGA 58.486 42.857 12.14 0.00 0.00 4.35
5146 5309 2.228822 AGGCATTTCAAATGGACACGAC 59.771 45.455 12.14 0.00 0.00 4.34
5147 5310 2.030363 GGCATTTCAAATGGACACGACA 60.030 45.455 12.14 0.00 0.00 4.35
5148 5311 3.367292 GGCATTTCAAATGGACACGACAT 60.367 43.478 12.14 0.00 0.00 3.06
5149 5312 4.142491 GGCATTTCAAATGGACACGACATA 60.142 41.667 12.14 0.00 0.00 2.29
5150 5313 4.793216 GCATTTCAAATGGACACGACATAC 59.207 41.667 12.14 0.00 0.00 2.39
5157 5320 2.367486 TGGACACGACATACGGATGTA 58.633 47.619 14.70 0.00 46.64 2.29
5158 5321 2.953648 TGGACACGACATACGGATGTAT 59.046 45.455 14.70 1.66 46.64 2.29
5197 5360 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5198 5361 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5199 5362 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5200 5363 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5201 5364 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5202 5365 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
5203 5366 2.333926 TCACTCATTTTGCTCCGTACG 58.666 47.619 8.69 8.69 0.00 3.67
5204 5367 2.066262 CACTCATTTTGCTCCGTACGT 58.934 47.619 15.21 0.00 0.00 3.57
5205 5368 3.057386 TCACTCATTTTGCTCCGTACGTA 60.057 43.478 15.21 0.00 0.00 3.57
5206 5369 3.303495 CACTCATTTTGCTCCGTACGTAG 59.697 47.826 15.21 9.26 0.00 3.51
5208 5371 3.504863 TCATTTTGCTCCGTACGTAGTC 58.495 45.455 15.21 5.03 43.93 2.59
5209 5372 3.057386 TCATTTTGCTCCGTACGTAGTCA 60.057 43.478 15.21 7.62 43.93 3.41
5210 5373 2.336554 TTTGCTCCGTACGTAGTCAC 57.663 50.000 15.21 0.00 43.93 3.67
5211 5374 1.527034 TTGCTCCGTACGTAGTCACT 58.473 50.000 15.21 0.00 43.93 3.41
5212 5375 1.527034 TGCTCCGTACGTAGTCACTT 58.473 50.000 15.21 0.00 43.93 3.16
5213 5376 1.198408 TGCTCCGTACGTAGTCACTTG 59.802 52.381 15.21 0.00 43.93 3.16
5214 5377 1.198637 GCTCCGTACGTAGTCACTTGT 59.801 52.381 15.21 0.00 43.93 3.16
5215 5378 2.351157 GCTCCGTACGTAGTCACTTGTT 60.351 50.000 15.21 0.00 43.93 2.83
5216 5379 3.231965 CTCCGTACGTAGTCACTTGTTG 58.768 50.000 15.21 0.00 43.93 3.33
5217 5380 2.877786 TCCGTACGTAGTCACTTGTTGA 59.122 45.455 15.21 0.00 43.93 3.18
5218 5381 3.314913 TCCGTACGTAGTCACTTGTTGAA 59.685 43.478 15.21 0.00 43.93 2.69
5219 5382 4.043750 CCGTACGTAGTCACTTGTTGAAA 58.956 43.478 15.21 0.00 43.93 2.69
5220 5383 4.682860 CCGTACGTAGTCACTTGTTGAAAT 59.317 41.667 15.21 0.00 43.93 2.17
5221 5384 5.164119 CCGTACGTAGTCACTTGTTGAAATC 60.164 44.000 15.21 0.00 43.93 2.17
5222 5385 5.628193 CGTACGTAGTCACTTGTTGAAATCT 59.372 40.000 7.22 0.00 43.93 2.40
5223 5386 6.183359 CGTACGTAGTCACTTGTTGAAATCTC 60.183 42.308 7.22 0.00 43.93 2.75
5224 5387 5.844004 ACGTAGTCACTTGTTGAAATCTCT 58.156 37.500 0.00 0.00 29.74 3.10
5225 5388 6.978338 ACGTAGTCACTTGTTGAAATCTCTA 58.022 36.000 0.00 0.00 29.74 2.43
5226 5389 7.085116 ACGTAGTCACTTGTTGAAATCTCTAG 58.915 38.462 0.00 0.00 29.74 2.43
5227 5390 7.040617 ACGTAGTCACTTGTTGAAATCTCTAGA 60.041 37.037 0.00 0.00 29.74 2.43
5228 5391 7.808381 CGTAGTCACTTGTTGAAATCTCTAGAA 59.192 37.037 0.00 0.00 35.39 2.10
5229 5392 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5230 5393 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5231 5394 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5232 5395 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5233 5396 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5234 5397 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5235 5398 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
5236 5399 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5243 5406 8.934507 AATCTCTAGAAAGACAAGTATTTCGG 57.065 34.615 12.86 10.57 43.35 4.30
5244 5407 7.698506 TCTCTAGAAAGACAAGTATTTCGGA 57.301 36.000 12.86 13.29 43.35 4.55
5245 5408 8.118976 TCTCTAGAAAGACAAGTATTTCGGAA 57.881 34.615 12.86 4.56 43.35 4.30
5246 5409 8.027771 TCTCTAGAAAGACAAGTATTTCGGAAC 58.972 37.037 12.86 0.00 43.35 3.62
5264 5427 5.131594 GGAACGGAGGGAGTATATTGTAC 57.868 47.826 0.00 0.00 0.00 2.90
5265 5428 4.831710 GGAACGGAGGGAGTATATTGTACT 59.168 45.833 0.00 0.00 0.00 2.73
5266 5429 5.048154 GGAACGGAGGGAGTATATTGTACTC 60.048 48.000 11.08 11.08 42.28 2.59
5278 5441 9.880157 GAGTATATTGTACTCCCTTTGTAAACA 57.120 33.333 8.90 0.00 38.33 2.83
5289 5452 8.957466 ACTCCCTTTGTAAACAAATATAAGAGC 58.043 33.333 8.62 0.00 43.92 4.09
5290 5453 8.871629 TCCCTTTGTAAACAAATATAAGAGCA 57.128 30.769 8.62 0.00 43.92 4.26
5291 5454 9.474313 TCCCTTTGTAAACAAATATAAGAGCAT 57.526 29.630 8.62 0.00 43.92 3.79
5341 5504 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
5342 5505 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
5343 5506 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
5372 5536 4.114794 AGCAAAGTTTGTTGAAGCATGAC 58.885 39.130 16.70 0.00 0.00 3.06
5380 5544 2.223548 TGTTGAAGCATGACAGCACAAC 60.224 45.455 19.47 19.47 45.18 3.32
5403 5567 1.190833 AGGCTGACTGACTCCACAGG 61.191 60.000 0.00 0.00 41.59 4.00
5437 5601 6.001460 ACCGAAAGATAAAAGATGGTCACAA 58.999 36.000 0.00 0.00 0.00 3.33
5463 5631 3.777465 TCGTAATGACCTAGTGAGCAC 57.223 47.619 0.00 0.00 0.00 4.40
5485 5653 2.686405 ACGTGGAGGTGGTTTTCTTTTC 59.314 45.455 0.00 0.00 0.00 2.29
5553 5722 7.036996 TGTGTTTCTTGTGCAGATTTCATTA 57.963 32.000 0.00 0.00 0.00 1.90
5631 5801 4.194678 AGAAATATACTCCCTCCGTCCA 57.805 45.455 0.00 0.00 0.00 4.02
5634 5804 4.405756 AATATACTCCCTCCGTCCAGAT 57.594 45.455 0.00 0.00 0.00 2.90
5643 5813 2.894126 CCTCCGTCCAGATATACTTGCT 59.106 50.000 0.00 0.00 0.00 3.91
5660 5830 8.773033 ATACTTGCTGGAGAAATGGATTTATT 57.227 30.769 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.007323 GGCTAGGGTTGGGGACGT 61.007 66.667 0.00 0.00 0.00 4.34
35 36 0.791238 CTCGAGCTGACGACACGAAG 60.791 60.000 0.00 0.00 37.37 3.79
42 43 2.284798 GAATGGGCTCGAGCTGACGA 62.285 60.000 34.46 17.32 41.70 4.20
45 46 1.989508 TGGAATGGGCTCGAGCTGA 60.990 57.895 34.46 22.18 41.70 4.26
52 53 1.077429 GAGGTGGTGGAATGGGCTC 60.077 63.158 0.00 0.00 0.00 4.70
60 61 3.257627 ACCAAAGAGAGGTGGTGGA 57.742 52.632 0.00 0.00 46.53 4.02
67 68 1.604604 TTTGCCGAACCAAAGAGAGG 58.395 50.000 0.00 0.00 31.55 3.69
74 75 1.135333 GGTCTTGTTTTGCCGAACCAA 59.865 47.619 0.00 0.00 0.00 3.67
130 161 1.865970 GCTCGAATCTCCTGCTCAATG 59.134 52.381 0.00 0.00 0.00 2.82
188 219 3.764466 CTCCTGCTCGGGCGAGTT 61.764 66.667 1.14 0.00 43.70 3.01
220 251 3.765257 CTCATCCTCCCCCGCCTCT 62.765 68.421 0.00 0.00 0.00 3.69
227 258 2.817056 GCTGCTCCTCATCCTCCCC 61.817 68.421 0.00 0.00 0.00 4.81
228 259 2.817056 GGCTGCTCCTCATCCTCCC 61.817 68.421 0.00 0.00 0.00 4.30
229 260 2.042404 CTGGCTGCTCCTCATCCTCC 62.042 65.000 0.00 0.00 32.27 4.30
230 261 1.047596 TCTGGCTGCTCCTCATCCTC 61.048 60.000 0.00 0.00 32.27 3.71
231 262 1.002662 TCTGGCTGCTCCTCATCCT 59.997 57.895 0.00 0.00 32.27 3.24
232 263 1.446791 CTCTGGCTGCTCCTCATCC 59.553 63.158 0.00 0.00 35.26 3.51
233 264 1.446791 CCTCTGGCTGCTCCTCATC 59.553 63.158 0.00 0.00 35.26 2.92
234 265 2.071262 CCCTCTGGCTGCTCCTCAT 61.071 63.158 0.00 0.00 35.26 2.90
235 266 2.686470 CCCTCTGGCTGCTCCTCA 60.686 66.667 0.00 0.00 35.26 3.86
246 277 4.888325 ATCCTCCCCCGCCCTCTG 62.888 72.222 0.00 0.00 0.00 3.35
247 278 4.888325 CATCCTCCCCCGCCCTCT 62.888 72.222 0.00 0.00 0.00 3.69
248 279 4.880426 TCATCCTCCCCCGCCCTC 62.880 72.222 0.00 0.00 0.00 4.30
249 280 4.888325 CTCATCCTCCCCCGCCCT 62.888 72.222 0.00 0.00 0.00 5.19
251 282 4.880426 TCCTCATCCTCCCCCGCC 62.880 72.222 0.00 0.00 0.00 6.13
252 283 3.237741 CTCCTCATCCTCCCCCGC 61.238 72.222 0.00 0.00 0.00 6.13
253 284 3.237741 GCTCCTCATCCTCCCCCG 61.238 72.222 0.00 0.00 0.00 5.73
254 285 1.694169 TTGCTCCTCATCCTCCCCC 60.694 63.158 0.00 0.00 0.00 5.40
399 447 1.840635 GGACTCTGGGATAGGCTGTTT 59.159 52.381 0.00 0.00 0.00 2.83
405 453 2.166829 CTCGATGGACTCTGGGATAGG 58.833 57.143 0.00 0.00 0.00 2.57
407 455 1.780919 TCCTCGATGGACTCTGGGATA 59.219 52.381 0.11 0.00 40.56 2.59
423 471 0.543277 TCCACACATGCCTCATCCTC 59.457 55.000 0.00 0.00 0.00 3.71
558 618 2.045340 GGGTACATGGCGGCAACT 60.045 61.111 18.31 6.35 0.00 3.16
586 647 1.947456 TCGGTGATGTCCACTATCTCG 59.053 52.381 0.00 0.00 45.03 4.04
611 674 9.503369 AGATAACCTGTACTACTTTTATCCCTT 57.497 33.333 0.00 0.00 29.74 3.95
612 675 8.925338 CAGATAACCTGTACTACTTTTATCCCT 58.075 37.037 0.00 0.00 38.10 4.20
613 676 8.921205 TCAGATAACCTGTACTACTTTTATCCC 58.079 37.037 0.00 0.00 43.38 3.85
621 684 6.264292 CAGCAGATCAGATAACCTGTACTACT 59.736 42.308 0.00 0.00 43.38 2.57
643 706 3.987220 ACGTGCAAACAATAAAATCCAGC 59.013 39.130 0.00 0.00 0.00 4.85
711 785 7.386573 TGATCACGTGTTAAATTTGCTTCTCTA 59.613 33.333 16.51 0.00 0.00 2.43
768 853 1.081892 CTGCCGATGAACACAAGGAG 58.918 55.000 0.00 0.00 0.00 3.69
825 910 3.562505 ACGAGATGTCTACACGTGAAAC 58.437 45.455 25.01 16.48 33.96 2.78
832 917 2.412089 GCAAACCACGAGATGTCTACAC 59.588 50.000 0.00 0.00 0.00 2.90
880 965 4.373527 GTTTTTGCCCGTTCCAGTTTTAT 58.626 39.130 0.00 0.00 0.00 1.40
896 981 1.810755 GAGCGAGGGGTAAGGTTTTTG 59.189 52.381 0.00 0.00 0.00 2.44
897 982 1.271762 GGAGCGAGGGGTAAGGTTTTT 60.272 52.381 0.00 0.00 0.00 1.94
985 1071 2.279851 CATCGTGGCCGGCGAATA 60.280 61.111 22.54 8.54 41.84 1.75
1344 1430 0.389817 CTGAACGCAGGACCGAATCA 60.390 55.000 0.00 0.00 38.51 2.57
1362 1464 0.037326 TCGCAGAAATTCCTCGTGCT 60.037 50.000 3.97 0.00 31.74 4.40
1380 1482 3.562567 AAGCGAACACTCTACTGTCTC 57.437 47.619 0.00 0.00 0.00 3.36
1381 1483 3.609644 CGAAAGCGAACACTCTACTGTCT 60.610 47.826 0.00 0.00 40.82 3.41
1382 1484 2.657372 CGAAAGCGAACACTCTACTGTC 59.343 50.000 0.00 0.00 40.82 3.51
1383 1485 2.607282 CCGAAAGCGAACACTCTACTGT 60.607 50.000 0.00 0.00 40.82 3.55
1384 1486 1.986378 CCGAAAGCGAACACTCTACTG 59.014 52.381 0.00 0.00 40.82 2.74
1385 1487 1.612463 ACCGAAAGCGAACACTCTACT 59.388 47.619 0.00 0.00 40.82 2.57
1386 1488 1.719780 CACCGAAAGCGAACACTCTAC 59.280 52.381 0.00 0.00 40.82 2.59
1387 1489 1.933500 GCACCGAAAGCGAACACTCTA 60.934 52.381 0.00 0.00 40.82 2.43
1389 1491 1.204312 GCACCGAAAGCGAACACTC 59.796 57.895 0.00 0.00 40.82 3.51
1390 1492 1.227556 AGCACCGAAAGCGAACACT 60.228 52.632 0.00 0.00 40.82 3.55
1391 1493 1.082756 CAGCACCGAAAGCGAACAC 60.083 57.895 0.00 0.00 40.82 3.32
1392 1494 2.250939 CCAGCACCGAAAGCGAACA 61.251 57.895 0.00 0.00 40.82 3.18
1393 1495 2.556287 CCAGCACCGAAAGCGAAC 59.444 61.111 0.00 0.00 40.82 3.95
1394 1496 2.668212 CCCAGCACCGAAAGCGAA 60.668 61.111 0.00 0.00 40.82 4.70
1397 1499 1.241315 TTAAGCCCAGCACCGAAAGC 61.241 55.000 0.00 0.00 0.00 3.51
1398 1500 0.521735 GTTAAGCCCAGCACCGAAAG 59.478 55.000 0.00 0.00 0.00 2.62
1399 1501 1.231958 CGTTAAGCCCAGCACCGAAA 61.232 55.000 0.00 0.00 0.00 3.46
1400 1502 1.669760 CGTTAAGCCCAGCACCGAA 60.670 57.895 0.00 0.00 0.00 4.30
1401 1503 2.047655 CGTTAAGCCCAGCACCGA 60.048 61.111 0.00 0.00 0.00 4.69
1402 1504 1.231958 TTTCGTTAAGCCCAGCACCG 61.232 55.000 0.00 0.00 0.00 4.94
1403 1505 1.132453 GATTTCGTTAAGCCCAGCACC 59.868 52.381 0.00 0.00 0.00 5.01
1407 1509 2.096496 CAGCAGATTTCGTTAAGCCCAG 59.904 50.000 0.00 0.00 0.00 4.45
1408 1510 2.083774 CAGCAGATTTCGTTAAGCCCA 58.916 47.619 0.00 0.00 0.00 5.36
1412 1514 4.089065 GCAAAAGCAGCAGATTTCGTTAAG 59.911 41.667 0.00 0.00 30.96 1.85
1440 1542 2.031012 CTCCGTTCCAGCACTGCA 59.969 61.111 3.30 0.00 0.00 4.41
1486 1588 2.361104 ATGGTCGCCGTGGCAATT 60.361 55.556 12.06 0.00 42.06 2.32
1546 1648 1.891919 GTTGCTGGTCTTCACGGCA 60.892 57.895 0.00 0.00 32.43 5.69
1603 1705 3.297620 CTTGCAACGGCCAAGGCT 61.298 61.111 11.40 0.00 41.60 4.58
1648 1750 6.583562 AGCTAATGGTGGTAAATCTGTAGAC 58.416 40.000 0.00 0.00 0.00 2.59
1649 1751 6.808321 AGCTAATGGTGGTAAATCTGTAGA 57.192 37.500 0.00 0.00 0.00 2.59
1650 1752 6.823689 ACAAGCTAATGGTGGTAAATCTGTAG 59.176 38.462 0.00 0.00 0.00 2.74
1665 1769 6.817641 AGTCTCTCAAAGATGACAAGCTAATG 59.182 38.462 0.00 0.00 36.11 1.90
1669 1773 4.563168 CCAGTCTCTCAAAGATGACAAGCT 60.563 45.833 0.00 0.00 36.11 3.74
1686 1790 7.201750 CGCTATCTCTTCTTACTAAACCAGTCT 60.202 40.741 0.00 0.00 38.80 3.24
1692 1796 5.459434 GCACCGCTATCTCTTCTTACTAAAC 59.541 44.000 0.00 0.00 0.00 2.01
1710 1814 3.367630 CCAAACTTCATAAATTGCACCGC 59.632 43.478 0.00 0.00 0.00 5.68
1752 1856 8.016801 TGTGTAATCATGCATCATAAATTAGCG 58.983 33.333 0.00 0.00 0.00 4.26
1762 1866 8.152246 TCAGATATTCTGTGTAATCATGCATCA 58.848 33.333 0.00 0.00 44.58 3.07
1791 1895 5.703130 GTCTACTCTGGAAAGAACAGCATTT 59.297 40.000 0.00 0.00 35.94 2.32
1863 1967 1.200948 GTCTGAGCAAAATGGCCACTC 59.799 52.381 8.16 10.86 0.00 3.51
1944 2053 6.865205 AGAAATCTTTAGCACAGCATTTTGAC 59.135 34.615 0.00 0.00 0.00 3.18
1952 2061 4.006319 AGTCCAGAAATCTTTAGCACAGC 58.994 43.478 0.00 0.00 0.00 4.40
1954 2063 5.003804 GGAAGTCCAGAAATCTTTAGCACA 58.996 41.667 0.00 0.00 35.64 4.57
1955 2064 5.249420 AGGAAGTCCAGAAATCTTTAGCAC 58.751 41.667 0.00 0.00 38.89 4.40
1981 2090 1.749258 CCCCGGTTTTAGCTCCTGC 60.749 63.158 0.00 0.00 40.05 4.85
1990 2099 1.641714 TCCACCAATATCCCCGGTTTT 59.358 47.619 0.00 0.00 0.00 2.43
1996 2105 2.683211 AGCATTCCACCAATATCCCC 57.317 50.000 0.00 0.00 0.00 4.81
2020 2129 2.094700 CAGATCACCTCGAAAGTCCGAA 60.095 50.000 0.00 0.00 38.17 4.30
2155 2264 3.382546 AGTGCCATGCCACTAAATTCATC 59.617 43.478 7.71 0.00 43.86 2.92
2156 2265 3.131577 CAGTGCCATGCCACTAAATTCAT 59.868 43.478 9.31 0.00 43.85 2.57
2160 2269 2.220653 ACAGTGCCATGCCACTAAAT 57.779 45.000 9.31 0.00 43.85 1.40
2258 2367 3.694043 TCCGGAATTGTTGATGAGTGA 57.306 42.857 0.00 0.00 0.00 3.41
2293 2402 2.580966 AACCGGAAGTAGCGATTCTC 57.419 50.000 9.46 0.00 0.00 2.87
2343 2453 5.959583 ACCTCTAGCCTTTGTATAGCTTT 57.040 39.130 0.00 0.00 38.06 3.51
2355 2465 5.763876 ATAGTGTTTCAAACCTCTAGCCT 57.236 39.130 0.00 0.00 0.00 4.58
2439 2576 3.475566 TTCAGCCAGGACTATGCATAC 57.524 47.619 1.16 0.00 0.00 2.39
2534 2671 4.487948 TCACATTGCCGTAGTACAGTTAC 58.512 43.478 0.38 0.00 0.00 2.50
2692 2835 5.283060 TCTGCTTTTGATCGAAACTAAGC 57.717 39.130 14.84 14.84 38.68 3.09
2775 2918 7.781056 TGGCCATCTAAAAGAAATAATCCAAC 58.219 34.615 0.00 0.00 0.00 3.77
2816 2959 3.754850 TGCAAACTGAAGACATCCAGATG 59.245 43.478 6.09 6.09 44.15 2.90
2845 2988 8.715191 TCAGCAAAATTCAAATAAAACACACT 57.285 26.923 0.00 0.00 0.00 3.55
2861 3004 5.766174 ACAGGCATGAAAATTTCAGCAAAAT 59.234 32.000 21.99 2.97 43.98 1.82
2874 3017 7.350744 AGCATTTATATCAACAGGCATGAAA 57.649 32.000 4.84 0.00 0.00 2.69
2875 3018 6.964807 AGCATTTATATCAACAGGCATGAA 57.035 33.333 4.84 0.00 0.00 2.57
2877 3020 7.524912 GTCTAGCATTTATATCAACAGGCATG 58.475 38.462 0.00 0.00 0.00 4.06
2879 3022 5.696270 CGTCTAGCATTTATATCAACAGGCA 59.304 40.000 0.00 0.00 0.00 4.75
2933 3077 1.066430 GGTCTAACTGGACATTGCCGA 60.066 52.381 0.00 0.00 37.91 5.54
2934 3078 1.066143 AGGTCTAACTGGACATTGCCG 60.066 52.381 0.00 0.00 37.91 5.69
2951 3095 4.773149 AGGAAGAAAGAAGACATACGAGGT 59.227 41.667 0.00 0.00 0.00 3.85
2955 3099 5.521735 CCATGAGGAAGAAAGAAGACATACG 59.478 44.000 0.00 0.00 36.89 3.06
2960 3104 6.760770 CAGATACCATGAGGAAGAAAGAAGAC 59.239 42.308 0.00 0.00 38.69 3.01
2962 3106 6.054295 CCAGATACCATGAGGAAGAAAGAAG 58.946 44.000 0.00 0.00 38.69 2.85
2963 3107 5.630069 GCCAGATACCATGAGGAAGAAAGAA 60.630 44.000 0.00 0.00 38.69 2.52
2965 3109 4.133078 GCCAGATACCATGAGGAAGAAAG 58.867 47.826 0.00 0.00 38.69 2.62
2966 3110 3.782523 AGCCAGATACCATGAGGAAGAAA 59.217 43.478 0.00 0.00 38.69 2.52
2972 3116 1.347050 CCAGAGCCAGATACCATGAGG 59.653 57.143 0.00 0.00 42.21 3.86
3006 3151 7.496920 TGCTCATATCTGTAAAAATGAGAGGTG 59.503 37.037 13.78 0.00 45.29 4.00
3150 3295 2.489938 TATCAACACCAACTGCCCTC 57.510 50.000 0.00 0.00 0.00 4.30
3208 3353 5.163509 TGCTACACCAAAGTTAAAATGTGCA 60.164 36.000 0.00 0.00 0.00 4.57
3209 3354 5.285651 TGCTACACCAAAGTTAAAATGTGC 58.714 37.500 0.00 0.00 0.00 4.57
3212 3357 9.638239 ATTACATGCTACACCAAAGTTAAAATG 57.362 29.630 0.00 0.00 0.00 2.32
3214 3359 9.685828 GAATTACATGCTACACCAAAGTTAAAA 57.314 29.630 0.00 0.00 0.00 1.52
3262 3407 6.017440 TGTTGGCTGTAACATCAAGTAGTTTC 60.017 38.462 0.00 0.00 35.75 2.78
3305 3450 2.425312 CTCAGGCGTCACATACTCTCTT 59.575 50.000 0.00 0.00 0.00 2.85
3353 3498 6.399639 ACATAACAAAAACCCAACGATTCT 57.600 33.333 0.00 0.00 0.00 2.40
3396 3541 5.005779 GGAGTAATCAAGAACATGTAGCACG 59.994 44.000 0.00 0.00 0.00 5.34
3408 3553 4.772624 AGCAGTACACAGGAGTAATCAAGA 59.227 41.667 0.00 0.00 0.00 3.02
3409 3554 4.867047 CAGCAGTACACAGGAGTAATCAAG 59.133 45.833 0.00 0.00 0.00 3.02
3444 3589 8.251383 ACTTCAGTTATGCATACTAGTACCAT 57.749 34.615 5.74 17.28 0.00 3.55
3453 3598 6.985188 TTCCAGAACTTCAGTTATGCATAC 57.015 37.500 5.74 2.14 43.62 2.39
3639 3784 5.638596 ACCATCTTTTTACGGATTTCACC 57.361 39.130 0.00 0.00 0.00 4.02
3656 3801 7.113658 TCAGACTCCTGAACTATTAACCATC 57.886 40.000 0.00 0.00 45.74 3.51
3767 3912 5.561919 CGTTTGTATGCTTGCAAAACCTAGA 60.562 40.000 15.60 0.00 38.84 2.43
3806 3951 2.410730 GTGAGTTCATGCAAATTGCTGC 59.589 45.455 19.34 4.87 45.31 5.25
3807 3952 3.909430 AGTGAGTTCATGCAAATTGCTG 58.091 40.909 19.34 13.95 45.31 4.41
3808 3953 4.595762 AAGTGAGTTCATGCAAATTGCT 57.404 36.364 19.34 1.86 45.31 3.91
3837 3985 1.399727 GGACCTGACAAAAATCGCACG 60.400 52.381 0.00 0.00 0.00 5.34
3846 3994 1.124780 TGAAGACCGGACCTGACAAA 58.875 50.000 9.46 0.00 0.00 2.83
3865 4013 0.396417 AGAGCTCTCCTGCACGGTAT 60.396 55.000 11.45 0.00 34.99 2.73
4135 4286 7.446931 TCTTTCAAAGGTAATGATACAGCAACA 59.553 33.333 0.00 0.00 33.45 3.33
4194 4346 1.402896 CGGCCAGAGGGATAGCTTCA 61.403 60.000 2.24 0.00 35.59 3.02
4195 4347 1.369321 CGGCCAGAGGGATAGCTTC 59.631 63.158 2.24 0.00 35.59 3.86
4196 4348 0.983378 AACGGCCAGAGGGATAGCTT 60.983 55.000 2.24 0.00 35.59 3.74
4197 4349 0.983378 AAACGGCCAGAGGGATAGCT 60.983 55.000 2.24 0.00 35.59 3.32
4201 4353 0.625849 AATCAAACGGCCAGAGGGAT 59.374 50.000 2.24 0.00 35.59 3.85
4210 4362 1.002468 AGCATCGCATAATCAAACGGC 60.002 47.619 0.00 0.00 0.00 5.68
4211 4363 3.338818 AAGCATCGCATAATCAAACGG 57.661 42.857 0.00 0.00 0.00 4.44
4265 4417 4.320870 CACCGGAAGTACCTAAAACATGT 58.679 43.478 9.46 0.00 36.31 3.21
4271 4423 1.002315 GGTGCACCGGAAGTACCTAAA 59.998 52.381 22.49 0.00 38.53 1.85
4439 4594 7.862372 GCTACTTCAAATTGAACTGTGAATTCA 59.138 33.333 3.38 3.38 32.21 2.57
4512 4672 9.872757 CACAGAATTTCAAATCCAAATTCAAAG 57.127 29.630 16.34 10.11 46.26 2.77
4569 4729 7.876068 ACAATAAGAGTCACGGAAAATTCTACA 59.124 33.333 0.00 0.00 0.00 2.74
4570 4730 8.169268 CACAATAAGAGTCACGGAAAATTCTAC 58.831 37.037 0.00 0.00 0.00 2.59
4704 4866 6.891908 AGCCTAAAACACATTCCATATCAACT 59.108 34.615 0.00 0.00 0.00 3.16
4733 4896 8.454570 AAACAGAAGGAACGGTAAAGATAAAA 57.545 30.769 0.00 0.00 0.00 1.52
4745 4908 6.319399 ACACAAACTAAAAACAGAAGGAACG 58.681 36.000 0.00 0.00 0.00 3.95
4856 5019 6.316890 AGAGTTTGTTAACATTGTACCACGTT 59.683 34.615 9.56 0.00 36.70 3.99
4862 5025 9.575783 TGGAAAAAGAGTTTGTTAACATTGTAC 57.424 29.630 9.56 5.93 36.70 2.90
4867 5030 8.527810 TGTTCTGGAAAAAGAGTTTGTTAACAT 58.472 29.630 9.56 0.00 36.70 2.71
4906 5069 9.838975 TCTGTACATATTGTAAATTTTGCAGTG 57.161 29.630 0.00 6.63 34.21 3.66
4951 5114 7.555087 AGACAAATATTGAGGAACAGAGAGAG 58.445 38.462 0.00 0.00 0.00 3.20
4952 5115 7.487822 AGACAAATATTGAGGAACAGAGAGA 57.512 36.000 0.00 0.00 0.00 3.10
4953 5116 7.279758 GGAAGACAAATATTGAGGAACAGAGAG 59.720 40.741 0.00 0.00 0.00 3.20
4955 5118 7.108847 AGGAAGACAAATATTGAGGAACAGAG 58.891 38.462 0.00 0.00 0.00 3.35
4956 5119 7.020827 AGGAAGACAAATATTGAGGAACAGA 57.979 36.000 0.00 0.00 0.00 3.41
4957 5120 8.792830 TTAGGAAGACAAATATTGAGGAACAG 57.207 34.615 0.00 0.00 0.00 3.16
4958 5121 9.231297 CTTTAGGAAGACAAATATTGAGGAACA 57.769 33.333 0.00 0.00 34.71 3.18
4959 5122 9.449719 TCTTTAGGAAGACAAATATTGAGGAAC 57.550 33.333 0.00 0.00 36.99 3.62
4969 5132 9.971922 CTTGTTGAAATCTTTAGGAAGACAAAT 57.028 29.630 0.00 0.00 44.27 2.32
4970 5133 8.966868 ACTTGTTGAAATCTTTAGGAAGACAAA 58.033 29.630 0.00 0.00 44.27 2.83
4971 5134 8.405531 CACTTGTTGAAATCTTTAGGAAGACAA 58.594 33.333 0.00 0.00 44.27 3.18
4972 5135 7.773224 TCACTTGTTGAAATCTTTAGGAAGACA 59.227 33.333 0.00 0.00 44.27 3.41
4973 5136 8.070769 GTCACTTGTTGAAATCTTTAGGAAGAC 58.929 37.037 0.00 0.00 39.28 3.01
4974 5137 7.993183 AGTCACTTGTTGAAATCTTTAGGAAGA 59.007 33.333 0.00 0.00 40.11 2.87
4975 5138 8.159344 AGTCACTTGTTGAAATCTTTAGGAAG 57.841 34.615 0.00 0.00 35.39 3.46
4976 5139 9.052759 GTAGTCACTTGTTGAAATCTTTAGGAA 57.947 33.333 0.00 0.00 35.39 3.36
4977 5140 8.208224 TGTAGTCACTTGTTGAAATCTTTAGGA 58.792 33.333 0.00 0.00 35.39 2.94
4978 5141 8.378172 TGTAGTCACTTGTTGAAATCTTTAGG 57.622 34.615 0.00 0.00 35.39 2.69
4981 5144 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
4982 5145 7.117812 CCGTATGTAGTCACTTGTTGAAATCTT 59.882 37.037 0.00 0.00 35.39 2.40
4983 5146 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
4984 5147 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4985 5148 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4986 5149 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4987 5150 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4988 5151 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4989 5152 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4990 5153 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4991 5154 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4992 5155 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4993 5156 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4994 5157 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4995 5158 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4996 5159 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4997 5160 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4998 5161 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4999 5162 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5000 5163 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5001 5164 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5002 5165 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5003 5166 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5004 5167 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5005 5168 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5006 5169 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5007 5170 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5008 5171 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5040 5203 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
5042 5205 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
5043 5206 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
5044 5207 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
5045 5208 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
5046 5209 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
5047 5210 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
5048 5211 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
5050 5213 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
5051 5214 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
5052 5215 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
5053 5216 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
5054 5217 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
5055 5218 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
5058 5221 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
5064 5227 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
5065 5228 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
5075 5238 9.674068 GAGGGAGTATTTGTCTTTTTAGAGATT 57.326 33.333 0.00 0.00 0.00 2.40
5076 5239 8.268605 GGAGGGAGTATTTGTCTTTTTAGAGAT 58.731 37.037 0.00 0.00 0.00 2.75
5077 5240 7.578955 CGGAGGGAGTATTTGTCTTTTTAGAGA 60.579 40.741 0.00 0.00 0.00 3.10
5078 5241 6.535508 CGGAGGGAGTATTTGTCTTTTTAGAG 59.464 42.308 0.00 0.00 0.00 2.43
5079 5242 6.013984 ACGGAGGGAGTATTTGTCTTTTTAGA 60.014 38.462 0.00 0.00 0.00 2.10
5080 5243 6.171213 ACGGAGGGAGTATTTGTCTTTTTAG 58.829 40.000 0.00 0.00 0.00 1.85
5081 5244 6.117975 ACGGAGGGAGTATTTGTCTTTTTA 57.882 37.500 0.00 0.00 0.00 1.52
5082 5245 4.981812 ACGGAGGGAGTATTTGTCTTTTT 58.018 39.130 0.00 0.00 0.00 1.94
5083 5246 4.635699 ACGGAGGGAGTATTTGTCTTTT 57.364 40.909 0.00 0.00 0.00 2.27
5084 5247 4.565028 GGAACGGAGGGAGTATTTGTCTTT 60.565 45.833 0.00 0.00 0.00 2.52
5085 5248 3.055312 GGAACGGAGGGAGTATTTGTCTT 60.055 47.826 0.00 0.00 0.00 3.01
5086 5249 2.500504 GGAACGGAGGGAGTATTTGTCT 59.499 50.000 0.00 0.00 0.00 3.41
5087 5250 2.419713 GGGAACGGAGGGAGTATTTGTC 60.420 54.545 0.00 0.00 0.00 3.18
5088 5251 1.558294 GGGAACGGAGGGAGTATTTGT 59.442 52.381 0.00 0.00 0.00 2.83
5089 5252 1.557832 TGGGAACGGAGGGAGTATTTG 59.442 52.381 0.00 0.00 0.00 2.32
5090 5253 1.961133 TGGGAACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
5091 5254 1.961133 TTGGGAACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
5092 5255 1.961133 TTTGGGAACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
5093 5256 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5094 5257 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5095 5258 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
5096 5259 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
5097 5260 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
5098 5261 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
5099 5262 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
5100 5263 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
5101 5264 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
5102 5265 7.472543 CCTAGAAAGACAAATATTTGGGAACG 58.527 38.462 27.43 6.31 42.34 3.95
5103 5266 7.093945 TGCCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 42.34 3.62
5104 5267 6.951198 TGCCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 11.57 42.34 3.97
5105 5268 6.489603 TGCCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 8.88 42.34 4.37
5106 5269 6.773976 TGCCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 18.18 42.34 4.12
5107 5270 9.305925 GAAATGCCTAGAAAGACAAATATTTGG 57.694 33.333 27.43 12.85 42.34 3.28
5108 5271 9.859427 TGAAATGCCTAGAAAGACAAATATTTG 57.141 29.630 23.60 23.60 43.62 2.32
5112 5275 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
5113 5276 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
5114 5277 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
5115 5278 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
5116 5279 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
5117 5280 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
5118 5281 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
5119 5282 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
5120 5283 5.335583 CGTGTCCATTTGAAATGCCTAGAAA 60.336 40.000 12.26 0.00 0.00 2.52
5121 5284 4.155826 CGTGTCCATTTGAAATGCCTAGAA 59.844 41.667 12.26 0.00 0.00 2.10
5122 5285 3.689161 CGTGTCCATTTGAAATGCCTAGA 59.311 43.478 12.26 1.83 0.00 2.43
5123 5286 3.689161 TCGTGTCCATTTGAAATGCCTAG 59.311 43.478 12.26 0.00 0.00 3.02
5124 5287 3.438781 GTCGTGTCCATTTGAAATGCCTA 59.561 43.478 12.26 0.00 0.00 3.93
5125 5288 2.228822 GTCGTGTCCATTTGAAATGCCT 59.771 45.455 12.26 0.00 0.00 4.75
5126 5289 2.030363 TGTCGTGTCCATTTGAAATGCC 60.030 45.455 12.26 5.75 0.00 4.40
5127 5290 3.281341 TGTCGTGTCCATTTGAAATGC 57.719 42.857 12.26 0.87 0.00 3.56
5128 5291 5.021389 CGTATGTCGTGTCCATTTGAAATG 58.979 41.667 10.84 10.84 34.52 2.32
5129 5292 4.094294 CCGTATGTCGTGTCCATTTGAAAT 59.906 41.667 0.00 0.00 37.94 2.17
5130 5293 3.433957 CCGTATGTCGTGTCCATTTGAAA 59.566 43.478 0.00 0.00 37.94 2.69
5131 5294 2.997303 CCGTATGTCGTGTCCATTTGAA 59.003 45.455 0.00 0.00 37.94 2.69
5132 5295 2.231721 TCCGTATGTCGTGTCCATTTGA 59.768 45.455 0.00 0.00 37.94 2.69
5133 5296 2.612604 TCCGTATGTCGTGTCCATTTG 58.387 47.619 0.00 0.00 37.94 2.32
5134 5297 3.194861 CATCCGTATGTCGTGTCCATTT 58.805 45.455 0.00 0.00 37.94 2.32
5135 5298 2.167693 ACATCCGTATGTCGTGTCCATT 59.832 45.455 0.00 0.00 42.92 3.16
5136 5299 1.754803 ACATCCGTATGTCGTGTCCAT 59.245 47.619 0.00 0.00 42.92 3.41
5137 5300 1.179152 ACATCCGTATGTCGTGTCCA 58.821 50.000 0.00 0.00 42.92 4.02
5138 5301 3.305964 CATACATCCGTATGTCGTGTCC 58.694 50.000 0.00 0.00 46.70 4.02
5175 5338 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5176 5339 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5177 5340 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5178 5341 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5179 5342 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5180 5343 4.492570 CGTACGGAGCAAAATGAGTGAATC 60.493 45.833 7.57 0.00 0.00 2.52
5181 5344 3.370978 CGTACGGAGCAAAATGAGTGAAT 59.629 43.478 7.57 0.00 0.00 2.57
5182 5345 2.734606 CGTACGGAGCAAAATGAGTGAA 59.265 45.455 7.57 0.00 0.00 3.18
5183 5346 2.288579 ACGTACGGAGCAAAATGAGTGA 60.289 45.455 21.06 0.00 0.00 3.41
5184 5347 2.066262 ACGTACGGAGCAAAATGAGTG 58.934 47.619 21.06 0.00 0.00 3.51
5185 5348 2.450609 ACGTACGGAGCAAAATGAGT 57.549 45.000 21.06 0.00 0.00 3.41
5186 5349 3.508762 ACTACGTACGGAGCAAAATGAG 58.491 45.455 27.33 1.42 0.00 2.90
5187 5350 3.057386 TGACTACGTACGGAGCAAAATGA 60.057 43.478 27.33 0.00 0.00 2.57
5188 5351 3.060363 GTGACTACGTACGGAGCAAAATG 59.940 47.826 27.33 3.03 0.00 2.32
5189 5352 3.057033 AGTGACTACGTACGGAGCAAAAT 60.057 43.478 27.33 7.40 0.00 1.82
5190 5353 2.294233 AGTGACTACGTACGGAGCAAAA 59.706 45.455 27.33 7.64 0.00 2.44
5191 5354 1.881973 AGTGACTACGTACGGAGCAAA 59.118 47.619 27.33 10.27 0.00 3.68
5192 5355 1.527034 AGTGACTACGTACGGAGCAA 58.473 50.000 27.33 12.96 0.00 3.91
5193 5356 1.198408 CAAGTGACTACGTACGGAGCA 59.802 52.381 27.33 21.55 0.00 4.26
5194 5357 1.198637 ACAAGTGACTACGTACGGAGC 59.801 52.381 27.33 19.29 0.00 4.70
5195 5358 3.058708 TCAACAAGTGACTACGTACGGAG 60.059 47.826 25.90 25.90 0.00 4.63
5196 5359 2.877786 TCAACAAGTGACTACGTACGGA 59.122 45.455 21.06 10.81 0.00 4.69
5197 5360 3.272439 TCAACAAGTGACTACGTACGG 57.728 47.619 21.06 5.00 0.00 4.02
5198 5361 5.628193 AGATTTCAACAAGTGACTACGTACG 59.372 40.000 15.01 15.01 35.39 3.67
5199 5362 6.862090 AGAGATTTCAACAAGTGACTACGTAC 59.138 38.462 0.00 0.00 35.39 3.67
5200 5363 6.978338 AGAGATTTCAACAAGTGACTACGTA 58.022 36.000 0.00 0.00 35.39 3.57
5201 5364 5.844004 AGAGATTTCAACAAGTGACTACGT 58.156 37.500 0.00 0.00 35.39 3.57
5202 5365 7.306213 TCTAGAGATTTCAACAAGTGACTACG 58.694 38.462 0.00 0.00 35.39 3.51
5203 5366 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5204 5367 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5205 5368 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5206 5369 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5207 5370 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5208 5371 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5209 5372 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5210 5373 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
5211 5374 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
5217 5380 9.372369 CCGAAATACTTGTCTTTCTAGAGATTT 57.628 33.333 9.02 0.00 30.80 2.17
5218 5381 8.750298 TCCGAAATACTTGTCTTTCTAGAGATT 58.250 33.333 9.02 0.00 30.80 2.40
5219 5382 8.294954 TCCGAAATACTTGTCTTTCTAGAGAT 57.705 34.615 9.02 0.00 30.80 2.75
5220 5383 7.698506 TCCGAAATACTTGTCTTTCTAGAGA 57.301 36.000 9.02 0.00 30.80 3.10
5221 5384 7.008447 CGTTCCGAAATACTTGTCTTTCTAGAG 59.992 40.741 9.02 0.00 30.80 2.43
5222 5385 6.805271 CGTTCCGAAATACTTGTCTTTCTAGA 59.195 38.462 9.02 0.00 30.80 2.43
5223 5386 6.034683 CCGTTCCGAAATACTTGTCTTTCTAG 59.965 42.308 9.02 0.00 30.80 2.43
5224 5387 5.865552 CCGTTCCGAAATACTTGTCTTTCTA 59.134 40.000 9.02 0.00 30.80 2.10
5225 5388 4.689345 CCGTTCCGAAATACTTGTCTTTCT 59.311 41.667 9.02 0.00 30.80 2.52
5226 5389 4.687483 TCCGTTCCGAAATACTTGTCTTTC 59.313 41.667 0.00 2.73 0.00 2.62
5227 5390 4.634199 TCCGTTCCGAAATACTTGTCTTT 58.366 39.130 0.00 0.00 0.00 2.52
5228 5391 4.243270 CTCCGTTCCGAAATACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
5229 5392 3.368116 CCTCCGTTCCGAAATACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
5230 5393 2.928116 CCTCCGTTCCGAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5231 5394 2.354403 CCCTCCGTTCCGAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5232 5395 2.093869 TCCCTCCGTTCCGAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5233 5396 2.167900 CTCCCTCCGTTCCGAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5234 5397 1.755380 CTCCCTCCGTTCCGAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5235 5398 1.479730 ACTCCCTCCGTTCCGAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5236 5399 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5237 5400 1.856629 TACTCCCTCCGTTCCGAAAT 58.143 50.000 0.00 0.00 0.00 2.17
5238 5401 1.856629 ATACTCCCTCCGTTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
5239 5402 2.734755 TATACTCCCTCCGTTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
5240 5403 2.889045 CAATATACTCCCTCCGTTCCGA 59.111 50.000 0.00 0.00 0.00 4.55
5241 5404 2.626743 ACAATATACTCCCTCCGTTCCG 59.373 50.000 0.00 0.00 0.00 4.30
5242 5405 4.831710 AGTACAATATACTCCCTCCGTTCC 59.168 45.833 0.00 0.00 0.00 3.62
5243 5406 6.011476 GAGTACAATATACTCCCTCCGTTC 57.989 45.833 0.00 0.00 38.33 3.95
5252 5415 9.880157 TGTTTACAAAGGGAGTACAATATACTC 57.120 33.333 5.67 5.67 42.28 2.59
5315 5478 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
5316 5479 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
5317 5480 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
5318 5481 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
5319 5482 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
5320 5483 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
5321 5484 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
5322 5485 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
5323 5486 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
5324 5487 8.537728 TTGTACTCCCTCCGTAAAGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
5325 5488 7.427989 TTGTACTCCCTCCGTAAAGAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
5326 5489 6.855763 TTGTACTCCCTCCGTAAAGAAATA 57.144 37.500 0.00 0.00 0.00 1.40
5327 5490 5.750352 TTGTACTCCCTCCGTAAAGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
5328 5491 5.544650 CTTTGTACTCCCTCCGTAAAGAAA 58.455 41.667 0.00 0.00 0.00 2.52
5329 5492 4.562143 GCTTTGTACTCCCTCCGTAAAGAA 60.562 45.833 0.00 0.00 0.00 2.52
5330 5493 3.056322 GCTTTGTACTCCCTCCGTAAAGA 60.056 47.826 0.00 0.00 0.00 2.52
5331 5494 3.259902 GCTTTGTACTCCCTCCGTAAAG 58.740 50.000 0.00 0.00 0.00 1.85
5332 5495 2.633967 TGCTTTGTACTCCCTCCGTAAA 59.366 45.455 0.00 0.00 0.00 2.01
5333 5496 2.250031 TGCTTTGTACTCCCTCCGTAA 58.750 47.619 0.00 0.00 0.00 3.18
5334 5497 1.927487 TGCTTTGTACTCCCTCCGTA 58.073 50.000 0.00 0.00 0.00 4.02
5335 5498 1.053424 TTGCTTTGTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
5336 5499 2.076863 CTTTGCTTTGTACTCCCTCCG 58.923 52.381 0.00 0.00 0.00 4.63
5337 5500 3.141767 ACTTTGCTTTGTACTCCCTCC 57.858 47.619 0.00 0.00 0.00 4.30
5338 5501 4.338400 ACAAACTTTGCTTTGTACTCCCTC 59.662 41.667 1.14 0.00 41.57 4.30
5339 5502 4.278310 ACAAACTTTGCTTTGTACTCCCT 58.722 39.130 1.14 0.00 41.57 4.20
5340 5503 4.649088 ACAAACTTTGCTTTGTACTCCC 57.351 40.909 1.14 0.00 41.57 4.30
5341 5504 5.646606 TCAACAAACTTTGCTTTGTACTCC 58.353 37.500 1.14 0.00 42.36 3.85
5342 5505 6.237569 GCTTCAACAAACTTTGCTTTGTACTC 60.238 38.462 1.14 0.00 42.36 2.59
5343 5506 5.576774 GCTTCAACAAACTTTGCTTTGTACT 59.423 36.000 1.14 0.00 42.36 2.73
5372 5536 3.566261 CAGCCTACCGTTGTGCTG 58.434 61.111 8.28 8.28 44.43 4.41
5380 5544 0.965866 TGGAGTCAGTCAGCCTACCG 60.966 60.000 0.00 0.00 0.00 4.02
5403 5567 8.091385 TCTTTTATCTTTCGGTGGACTTAAAC 57.909 34.615 0.00 0.00 0.00 2.01
5437 5601 5.401531 TCACTAGGTCATTACGAAGCTTT 57.598 39.130 0.00 0.00 0.00 3.51
5463 5631 1.675552 AAGAAAACCACCTCCACGTG 58.324 50.000 9.08 9.08 0.00 4.49
5471 5639 8.887036 ATTGAAACATAGAAAAGAAAACCACC 57.113 30.769 0.00 0.00 0.00 4.61
5631 5801 6.753913 TCCATTTCTCCAGCAAGTATATCT 57.246 37.500 0.00 0.00 0.00 1.98
5634 5804 9.866655 AATAAATCCATTTCTCCAGCAAGTATA 57.133 29.630 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.