Multiple sequence alignment - TraesCS3B01G338400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G338400 chr3B 100.000 2438 0 0 1 2438 544923297 544920860 0.000000e+00 4503
1 TraesCS3B01G338400 chr3B 92.468 1726 91 21 728 2438 545009205 545007504 0.000000e+00 2431
2 TraesCS3B01G338400 chr3B 91.758 182 13 2 1444 1624 544818780 544818600 4.020000e-63 252
3 TraesCS3B01G338400 chr3B 94.262 122 3 4 1625 1743 544818557 544818437 1.490000e-42 183
4 TraesCS3B01G338400 chr3B 89.706 136 13 1 1297 1432 544819027 544818893 3.220000e-39 172
5 TraesCS3B01G338400 chr3D 86.725 1032 87 21 619 1624 418705991 418704984 0.000000e+00 1101
6 TraesCS3B01G338400 chr3D 94.786 537 26 2 1090 1624 418482627 418482091 0.000000e+00 835
7 TraesCS3B01G338400 chr3D 90.064 624 24 14 486 1094 418483431 418482831 0.000000e+00 774
8 TraesCS3B01G338400 chr3D 88.571 385 35 3 1056 1432 418410759 418410376 2.210000e-125 459
9 TraesCS3B01G338400 chr3D 90.476 273 26 0 1160 1432 416404365 416404637 6.410000e-96 361
10 TraesCS3B01G338400 chr3D 81.424 323 31 20 723 1025 416404043 416404356 1.130000e-58 237
11 TraesCS3B01G338400 chr3D 93.939 132 5 3 1625 1753 418482048 418481917 1.910000e-46 196
12 TraesCS3B01G338400 chr3D 83.871 155 10 2 1471 1624 418410256 418410116 1.520000e-27 134
13 TraesCS3B01G338400 chr3A 87.393 936 77 18 604 1520 532487864 532488777 0.000000e+00 1037
14 TraesCS3B01G338400 chr3A 86.705 346 36 4 981 1326 532644441 532644776 2.290000e-100 375
15 TraesCS3B01G338400 chr3A 84.729 203 16 4 580 776 532644150 532644343 3.200000e-44 189
16 TraesCS3B01G338400 chr3A 94.215 121 4 3 1625 1743 532645156 532645275 5.350000e-42 182
17 TraesCS3B01G338400 chr3A 83.060 183 16 2 1443 1624 532644944 532645112 4.200000e-33 152
18 TraesCS3B01G338400 chr3A 88.696 115 8 4 3 112 534174372 534174258 4.230000e-28 135
19 TraesCS3B01G338400 chr2D 93.853 667 41 0 1772 2438 147354012 147354678 0.000000e+00 1005
20 TraesCS3B01G338400 chr1B 92.274 686 53 0 1753 2438 269085457 269086142 0.000000e+00 974
21 TraesCS3B01G338400 chr1B 77.071 676 137 17 1752 2418 95629873 95629207 8.230000e-100 374
22 TraesCS3B01G338400 chr1B 89.241 158 14 2 160 315 39705604 39705760 6.880000e-46 195
23 TraesCS3B01G338400 chr7B 91.266 687 58 2 1752 2438 138662488 138663172 0.000000e+00 935
24 TraesCS3B01G338400 chr7D 91.241 685 60 0 1754 2438 252026469 252025785 0.000000e+00 933
25 TraesCS3B01G338400 chr7D 86.555 119 10 4 525 641 6443022 6443136 2.540000e-25 126
26 TraesCS3B01G338400 chr4D 90.625 544 51 0 1752 2295 276625681 276626224 0.000000e+00 723
27 TraesCS3B01G338400 chr6A 77.299 696 141 14 1752 2438 596204450 596203763 6.320000e-106 394
28 TraesCS3B01G338400 chr5B 76.868 696 144 14 1752 2438 686848413 686849100 6.360000e-101 377
29 TraesCS3B01G338400 chr1D 89.873 158 13 2 160 315 24157980 24158136 1.480000e-47 200
30 TraesCS3B01G338400 chr1A 87.975 158 16 2 160 315 25288987 25289143 1.490000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G338400 chr3B 544920860 544923297 2437 True 4503.000000 4503 100.000000 1 2438 1 chr3B.!!$R1 2437
1 TraesCS3B01G338400 chr3B 545007504 545009205 1701 True 2431.000000 2431 92.468000 728 2438 1 chr3B.!!$R2 1710
2 TraesCS3B01G338400 chr3B 544818437 544819027 590 True 202.333333 252 91.908667 1297 1743 3 chr3B.!!$R3 446
3 TraesCS3B01G338400 chr3D 418704984 418705991 1007 True 1101.000000 1101 86.725000 619 1624 1 chr3D.!!$R1 1005
4 TraesCS3B01G338400 chr3D 418481917 418483431 1514 True 601.666667 835 92.929667 486 1753 3 chr3D.!!$R3 1267
5 TraesCS3B01G338400 chr3D 416404043 416404637 594 False 299.000000 361 85.950000 723 1432 2 chr3D.!!$F1 709
6 TraesCS3B01G338400 chr3D 418410116 418410759 643 True 296.500000 459 86.221000 1056 1624 2 chr3D.!!$R2 568
7 TraesCS3B01G338400 chr3A 532487864 532488777 913 False 1037.000000 1037 87.393000 604 1520 1 chr3A.!!$F1 916
8 TraesCS3B01G338400 chr3A 532644150 532645275 1125 False 224.500000 375 87.177250 580 1743 4 chr3A.!!$F2 1163
9 TraesCS3B01G338400 chr2D 147354012 147354678 666 False 1005.000000 1005 93.853000 1772 2438 1 chr2D.!!$F1 666
10 TraesCS3B01G338400 chr1B 269085457 269086142 685 False 974.000000 974 92.274000 1753 2438 1 chr1B.!!$F2 685
11 TraesCS3B01G338400 chr1B 95629207 95629873 666 True 374.000000 374 77.071000 1752 2418 1 chr1B.!!$R1 666
12 TraesCS3B01G338400 chr7B 138662488 138663172 684 False 935.000000 935 91.266000 1752 2438 1 chr7B.!!$F1 686
13 TraesCS3B01G338400 chr7D 252025785 252026469 684 True 933.000000 933 91.241000 1754 2438 1 chr7D.!!$R1 684
14 TraesCS3B01G338400 chr4D 276625681 276626224 543 False 723.000000 723 90.625000 1752 2295 1 chr4D.!!$F1 543
15 TraesCS3B01G338400 chr6A 596203763 596204450 687 True 394.000000 394 77.299000 1752 2438 1 chr6A.!!$R1 686
16 TraesCS3B01G338400 chr5B 686848413 686849100 687 False 377.000000 377 76.868000 1752 2438 1 chr5B.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.037232 CTCCACTTCCTTGTCGACCC 60.037 60.0 14.12 0.00 0.00 4.46 F
428 429 0.116940 ATTTGGCCTCCATGGTGGTT 59.883 50.0 29.03 10.52 39.03 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1484 0.742990 CCCGAACGCCTCTTTGCATA 60.743 55.000 0.0 0.0 0.0 3.14 R
2151 2571 1.071542 TCGACTTGGGCTGTGATTTGA 59.928 47.619 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.615496 CCGAATAACTAGTTGTGGGTTCG 59.385 47.826 18.56 20.51 37.35 3.95
23 24 4.240096 CGAATAACTAGTTGTGGGTTCGT 58.760 43.478 18.56 0.00 35.19 3.85
24 25 5.401550 CGAATAACTAGTTGTGGGTTCGTA 58.598 41.667 18.56 0.00 35.19 3.43
25 26 5.287035 CGAATAACTAGTTGTGGGTTCGTAC 59.713 44.000 18.56 0.00 35.19 3.67
26 27 2.712057 ACTAGTTGTGGGTTCGTACG 57.288 50.000 9.53 9.53 0.00 3.67
27 28 1.956477 ACTAGTTGTGGGTTCGTACGT 59.044 47.619 16.05 0.00 0.00 3.57
28 29 2.362077 ACTAGTTGTGGGTTCGTACGTT 59.638 45.455 16.05 0.00 0.00 3.99
29 30 1.856802 AGTTGTGGGTTCGTACGTTC 58.143 50.000 16.05 9.31 0.00 3.95
30 31 1.136695 AGTTGTGGGTTCGTACGTTCA 59.863 47.619 16.05 6.81 0.00 3.18
31 32 1.523934 GTTGTGGGTTCGTACGTTCAG 59.476 52.381 16.05 0.00 0.00 3.02
32 33 1.031235 TGTGGGTTCGTACGTTCAGA 58.969 50.000 16.05 5.54 0.00 3.27
33 34 1.269206 TGTGGGTTCGTACGTTCAGAC 60.269 52.381 16.05 8.59 0.00 3.51
34 35 1.000938 GTGGGTTCGTACGTTCAGACT 60.001 52.381 16.05 0.00 0.00 3.24
35 36 1.001048 TGGGTTCGTACGTTCAGACTG 60.001 52.381 16.05 0.00 0.00 3.51
36 37 1.000938 GGGTTCGTACGTTCAGACTGT 60.001 52.381 16.05 0.00 0.00 3.55
37 38 2.049228 GGTTCGTACGTTCAGACTGTG 58.951 52.381 16.05 0.00 0.00 3.66
38 39 2.049228 GTTCGTACGTTCAGACTGTGG 58.951 52.381 16.05 0.00 0.00 4.17
39 40 1.596603 TCGTACGTTCAGACTGTGGA 58.403 50.000 16.05 0.00 0.00 4.02
40 41 1.948834 TCGTACGTTCAGACTGTGGAA 59.051 47.619 16.05 0.00 0.00 3.53
41 42 2.358582 TCGTACGTTCAGACTGTGGAAA 59.641 45.455 16.05 0.00 0.00 3.13
42 43 2.724690 CGTACGTTCAGACTGTGGAAAG 59.275 50.000 7.22 0.00 0.00 2.62
43 44 2.240493 ACGTTCAGACTGTGGAAAGG 57.760 50.000 1.59 0.00 0.00 3.11
44 45 1.485066 ACGTTCAGACTGTGGAAAGGT 59.515 47.619 1.59 0.00 0.00 3.50
45 46 1.867233 CGTTCAGACTGTGGAAAGGTG 59.133 52.381 1.59 0.00 0.00 4.00
46 47 2.222027 GTTCAGACTGTGGAAAGGTGG 58.778 52.381 1.59 0.00 0.00 4.61
47 48 0.108585 TCAGACTGTGGAAAGGTGGC 59.891 55.000 1.59 0.00 0.00 5.01
48 49 0.109342 CAGACTGTGGAAAGGTGGCT 59.891 55.000 0.00 0.00 0.00 4.75
49 50 0.109342 AGACTGTGGAAAGGTGGCTG 59.891 55.000 0.00 0.00 0.00 4.85
50 51 0.179018 GACTGTGGAAAGGTGGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
51 52 1.071699 GACTGTGGAAAGGTGGCTGTA 59.928 52.381 0.00 0.00 0.00 2.74
52 53 1.705186 ACTGTGGAAAGGTGGCTGTAT 59.295 47.619 0.00 0.00 0.00 2.29
53 54 2.108250 ACTGTGGAAAGGTGGCTGTATT 59.892 45.455 0.00 0.00 0.00 1.89
54 55 3.157087 CTGTGGAAAGGTGGCTGTATTT 58.843 45.455 0.00 0.00 0.00 1.40
55 56 3.571590 TGTGGAAAGGTGGCTGTATTTT 58.428 40.909 0.00 0.00 0.00 1.82
56 57 3.572255 TGTGGAAAGGTGGCTGTATTTTC 59.428 43.478 0.00 0.00 0.00 2.29
57 58 3.056821 GTGGAAAGGTGGCTGTATTTTCC 60.057 47.826 7.22 7.22 44.38 3.13
58 59 2.163613 GGAAAGGTGGCTGTATTTTCCG 59.836 50.000 0.00 0.00 37.93 4.30
59 60 2.579410 AAGGTGGCTGTATTTTCCGT 57.421 45.000 0.00 0.00 0.00 4.69
60 61 2.109425 AGGTGGCTGTATTTTCCGTC 57.891 50.000 0.00 0.00 0.00 4.79
61 62 1.092348 GGTGGCTGTATTTTCCGTCC 58.908 55.000 0.00 0.00 0.00 4.79
62 63 1.612199 GGTGGCTGTATTTTCCGTCCA 60.612 52.381 0.00 0.00 0.00 4.02
63 64 2.365582 GTGGCTGTATTTTCCGTCCAT 58.634 47.619 0.00 0.00 0.00 3.41
64 65 2.752903 GTGGCTGTATTTTCCGTCCATT 59.247 45.455 0.00 0.00 0.00 3.16
65 66 2.752354 TGGCTGTATTTTCCGTCCATTG 59.248 45.455 0.00 0.00 0.00 2.82
66 67 2.479560 GGCTGTATTTTCCGTCCATTGC 60.480 50.000 0.00 0.00 0.00 3.56
67 68 2.479560 GCTGTATTTTCCGTCCATTGCC 60.480 50.000 0.00 0.00 0.00 4.52
68 69 2.752354 CTGTATTTTCCGTCCATTGCCA 59.248 45.455 0.00 0.00 0.00 4.92
69 70 2.490115 TGTATTTTCCGTCCATTGCCAC 59.510 45.455 0.00 0.00 0.00 5.01
70 71 0.525761 ATTTTCCGTCCATTGCCACG 59.474 50.000 0.65 0.65 35.72 4.94
71 72 0.820074 TTTTCCGTCCATTGCCACGT 60.820 50.000 5.87 0.00 34.06 4.49
72 73 0.820074 TTTCCGTCCATTGCCACGTT 60.820 50.000 0.00 0.00 34.06 3.99
73 74 1.511318 TTCCGTCCATTGCCACGTTG 61.511 55.000 0.00 0.00 34.06 4.10
74 75 1.963855 CCGTCCATTGCCACGTTGA 60.964 57.895 0.00 0.00 34.06 3.18
75 76 1.497278 CGTCCATTGCCACGTTGAG 59.503 57.895 0.00 0.00 0.00 3.02
76 77 1.210155 GTCCATTGCCACGTTGAGC 59.790 57.895 0.00 0.00 0.00 4.26
77 78 1.073025 TCCATTGCCACGTTGAGCT 59.927 52.632 0.00 0.00 0.00 4.09
78 79 1.210931 CCATTGCCACGTTGAGCTG 59.789 57.895 0.00 0.00 0.00 4.24
79 80 1.518056 CCATTGCCACGTTGAGCTGT 61.518 55.000 0.00 0.00 0.00 4.40
80 81 0.386352 CATTGCCACGTTGAGCTGTG 60.386 55.000 0.00 0.00 35.87 3.66
81 82 0.819259 ATTGCCACGTTGAGCTGTGT 60.819 50.000 0.00 0.00 34.28 3.72
82 83 1.436195 TTGCCACGTTGAGCTGTGTC 61.436 55.000 0.00 0.00 34.28 3.67
83 84 2.607892 GCCACGTTGAGCTGTGTCC 61.608 63.158 0.00 0.00 34.28 4.02
84 85 1.961277 CCACGTTGAGCTGTGTCCC 60.961 63.158 0.00 0.00 34.28 4.46
85 86 2.029073 ACGTTGAGCTGTGTCCCG 59.971 61.111 0.00 0.00 0.00 5.14
86 87 2.029073 CGTTGAGCTGTGTCCCGT 59.971 61.111 0.00 0.00 0.00 5.28
87 88 1.287815 CGTTGAGCTGTGTCCCGTA 59.712 57.895 0.00 0.00 0.00 4.02
88 89 0.108804 CGTTGAGCTGTGTCCCGTAT 60.109 55.000 0.00 0.00 0.00 3.06
89 90 1.671850 CGTTGAGCTGTGTCCCGTATT 60.672 52.381 0.00 0.00 0.00 1.89
90 91 2.000447 GTTGAGCTGTGTCCCGTATTC 59.000 52.381 0.00 0.00 0.00 1.75
91 92 0.535335 TGAGCTGTGTCCCGTATTCC 59.465 55.000 0.00 0.00 0.00 3.01
92 93 0.535335 GAGCTGTGTCCCGTATTCCA 59.465 55.000 0.00 0.00 0.00 3.53
93 94 1.139058 GAGCTGTGTCCCGTATTCCAT 59.861 52.381 0.00 0.00 0.00 3.41
94 95 2.364324 GAGCTGTGTCCCGTATTCCATA 59.636 50.000 0.00 0.00 0.00 2.74
95 96 2.769663 AGCTGTGTCCCGTATTCCATAA 59.230 45.455 0.00 0.00 0.00 1.90
96 97 3.131396 GCTGTGTCCCGTATTCCATAAG 58.869 50.000 0.00 0.00 0.00 1.73
97 98 3.728845 CTGTGTCCCGTATTCCATAAGG 58.271 50.000 0.00 0.00 34.64 2.69
98 99 2.158871 TGTGTCCCGTATTCCATAAGGC 60.159 50.000 0.00 0.00 33.68 4.35
99 100 2.120312 TGTCCCGTATTCCATAAGGCA 58.880 47.619 0.00 0.00 33.68 4.75
100 101 2.506231 TGTCCCGTATTCCATAAGGCAA 59.494 45.455 0.00 0.00 33.68 4.52
101 102 3.137544 TGTCCCGTATTCCATAAGGCAAT 59.862 43.478 0.00 0.00 33.68 3.56
102 103 4.348461 TGTCCCGTATTCCATAAGGCAATA 59.652 41.667 0.00 0.00 33.68 1.90
103 104 5.163184 TGTCCCGTATTCCATAAGGCAATAA 60.163 40.000 0.00 0.00 33.68 1.40
104 105 5.180680 GTCCCGTATTCCATAAGGCAATAAC 59.819 44.000 0.00 0.00 33.68 1.89
105 106 5.072600 TCCCGTATTCCATAAGGCAATAACT 59.927 40.000 0.00 0.00 33.68 2.24
106 107 5.411669 CCCGTATTCCATAAGGCAATAACTC 59.588 44.000 0.00 0.00 33.68 3.01
107 108 5.120208 CCGTATTCCATAAGGCAATAACTCG 59.880 44.000 0.00 0.00 33.74 4.18
108 109 5.120208 CGTATTCCATAAGGCAATAACTCGG 59.880 44.000 0.00 0.00 33.74 4.63
109 110 4.497291 TTCCATAAGGCAATAACTCGGT 57.503 40.909 0.00 0.00 33.74 4.69
110 111 5.617528 TTCCATAAGGCAATAACTCGGTA 57.382 39.130 0.00 0.00 33.74 4.02
111 112 5.209818 TCCATAAGGCAATAACTCGGTAG 57.790 43.478 0.00 0.00 33.74 3.18
112 113 4.652421 TCCATAAGGCAATAACTCGGTAGT 59.348 41.667 0.00 0.00 33.75 2.73
113 114 4.750098 CCATAAGGCAATAACTCGGTAGTG 59.250 45.833 0.00 0.00 35.62 2.74
114 115 2.981859 AGGCAATAACTCGGTAGTGG 57.018 50.000 0.00 0.00 35.62 4.00
115 116 2.463752 AGGCAATAACTCGGTAGTGGA 58.536 47.619 0.00 0.00 35.62 4.02
116 117 2.835764 AGGCAATAACTCGGTAGTGGAA 59.164 45.455 0.00 0.00 35.62 3.53
117 118 3.118738 AGGCAATAACTCGGTAGTGGAAG 60.119 47.826 0.00 0.00 35.62 3.46
118 119 3.118884 GGCAATAACTCGGTAGTGGAAGA 60.119 47.826 0.00 0.00 35.62 2.87
119 120 4.501071 GCAATAACTCGGTAGTGGAAGAA 58.499 43.478 0.00 0.00 35.62 2.52
120 121 4.933400 GCAATAACTCGGTAGTGGAAGAAA 59.067 41.667 0.00 0.00 35.62 2.52
121 122 5.410439 GCAATAACTCGGTAGTGGAAGAAAA 59.590 40.000 0.00 0.00 35.62 2.29
122 123 6.072893 GCAATAACTCGGTAGTGGAAGAAAAA 60.073 38.462 0.00 0.00 35.62 1.94
123 124 7.361799 GCAATAACTCGGTAGTGGAAGAAAAAT 60.362 37.037 0.00 0.00 35.62 1.82
124 125 8.512138 CAATAACTCGGTAGTGGAAGAAAAATT 58.488 33.333 0.00 0.00 35.62 1.82
125 126 9.729281 AATAACTCGGTAGTGGAAGAAAAATTA 57.271 29.630 0.00 0.00 35.62 1.40
126 127 7.430992 AACTCGGTAGTGGAAGAAAAATTAC 57.569 36.000 0.00 0.00 35.62 1.89
127 128 6.766429 ACTCGGTAGTGGAAGAAAAATTACT 58.234 36.000 0.00 0.00 33.57 2.24
128 129 6.872547 ACTCGGTAGTGGAAGAAAAATTACTC 59.127 38.462 0.00 0.00 33.57 2.59
129 130 7.001099 TCGGTAGTGGAAGAAAAATTACTCT 57.999 36.000 0.00 0.00 0.00 3.24
130 131 6.872020 TCGGTAGTGGAAGAAAAATTACTCTG 59.128 38.462 0.00 0.00 0.00 3.35
131 132 6.872020 CGGTAGTGGAAGAAAAATTACTCTGA 59.128 38.462 0.00 0.00 0.00 3.27
132 133 7.148623 CGGTAGTGGAAGAAAAATTACTCTGAC 60.149 40.741 0.00 0.00 0.00 3.51
133 134 7.660208 GGTAGTGGAAGAAAAATTACTCTGACA 59.340 37.037 0.00 0.00 0.00 3.58
134 135 9.220767 GTAGTGGAAGAAAAATTACTCTGACAT 57.779 33.333 0.00 0.00 0.00 3.06
135 136 8.329203 AGTGGAAGAAAAATTACTCTGACATC 57.671 34.615 0.00 0.00 0.00 3.06
136 137 7.118390 AGTGGAAGAAAAATTACTCTGACATCG 59.882 37.037 0.00 0.00 0.00 3.84
137 138 6.371548 TGGAAGAAAAATTACTCTGACATCGG 59.628 38.462 0.00 0.00 0.00 4.18
138 139 5.803020 AGAAAAATTACTCTGACATCGGC 57.197 39.130 0.00 0.00 0.00 5.54
139 140 5.245531 AGAAAAATTACTCTGACATCGGCA 58.754 37.500 0.00 0.00 0.00 5.69
140 141 4.946784 AAAATTACTCTGACATCGGCAC 57.053 40.909 0.00 0.00 0.00 5.01
153 154 2.782615 GGCACGTTCGGTACATGC 59.217 61.111 0.00 0.00 44.89 4.06
154 155 2.394136 GCACGTTCGGTACATGCG 59.606 61.111 0.00 0.00 36.10 4.73
155 156 2.377310 GCACGTTCGGTACATGCGT 61.377 57.895 0.00 0.00 36.10 5.24
156 157 1.700029 CACGTTCGGTACATGCGTC 59.300 57.895 0.00 0.00 33.28 5.19
157 158 1.798725 ACGTTCGGTACATGCGTCG 60.799 57.895 0.00 1.89 0.00 5.12
158 159 1.512522 CGTTCGGTACATGCGTCGA 60.513 57.895 0.00 0.00 0.00 4.20
159 160 0.864377 CGTTCGGTACATGCGTCGAT 60.864 55.000 0.00 0.00 0.00 3.59
160 161 0.844503 GTTCGGTACATGCGTCGATC 59.155 55.000 0.00 2.74 0.00 3.69
161 162 0.452585 TTCGGTACATGCGTCGATCA 59.547 50.000 0.00 0.00 0.00 2.92
162 163 0.248336 TCGGTACATGCGTCGATCAC 60.248 55.000 0.00 0.00 0.00 3.06
163 164 0.248498 CGGTACATGCGTCGATCACT 60.248 55.000 0.00 0.00 0.00 3.41
164 165 1.797713 CGGTACATGCGTCGATCACTT 60.798 52.381 0.00 0.00 0.00 3.16
165 166 1.588404 GGTACATGCGTCGATCACTTG 59.412 52.381 0.00 0.00 0.00 3.16
166 167 2.259618 GTACATGCGTCGATCACTTGT 58.740 47.619 0.00 0.00 0.00 3.16
167 168 1.795768 ACATGCGTCGATCACTTGTT 58.204 45.000 0.00 0.00 0.00 2.83
168 169 1.726791 ACATGCGTCGATCACTTGTTC 59.273 47.619 0.00 0.00 0.00 3.18
169 170 1.995484 CATGCGTCGATCACTTGTTCT 59.005 47.619 0.00 0.00 0.00 3.01
170 171 2.148916 TGCGTCGATCACTTGTTCTT 57.851 45.000 0.00 0.00 0.00 2.52
171 172 1.792367 TGCGTCGATCACTTGTTCTTG 59.208 47.619 0.00 0.00 0.00 3.02
172 173 1.126846 GCGTCGATCACTTGTTCTTGG 59.873 52.381 0.00 0.00 0.00 3.61
173 174 1.126846 CGTCGATCACTTGTTCTTGGC 59.873 52.381 0.00 0.00 0.00 4.52
174 175 1.126846 GTCGATCACTTGTTCTTGGCG 59.873 52.381 0.00 0.00 0.00 5.69
175 176 1.000394 TCGATCACTTGTTCTTGGCGA 60.000 47.619 0.00 0.00 0.00 5.54
176 177 1.391485 CGATCACTTGTTCTTGGCGAG 59.609 52.381 0.00 0.00 0.00 5.03
177 178 1.129437 GATCACTTGTTCTTGGCGAGC 59.871 52.381 0.00 0.00 0.00 5.03
178 179 0.179059 TCACTTGTTCTTGGCGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
179 180 0.662619 CACTTGTTCTTGGCGAGCAA 59.337 50.000 0.00 0.00 40.02 3.91
180 181 0.663153 ACTTGTTCTTGGCGAGCAAC 59.337 50.000 0.00 3.80 37.84 4.17
181 182 0.662619 CTTGTTCTTGGCGAGCAACA 59.337 50.000 12.73 12.73 37.84 3.33
182 183 0.380378 TTGTTCTTGGCGAGCAACAC 59.620 50.000 15.08 3.77 37.84 3.32
183 184 1.082756 GTTCTTGGCGAGCAACACG 60.083 57.895 0.00 0.00 0.00 4.49
184 185 1.522806 TTCTTGGCGAGCAACACGT 60.523 52.632 0.00 0.00 0.00 4.49
185 186 1.495584 TTCTTGGCGAGCAACACGTC 61.496 55.000 0.00 0.00 35.87 4.34
186 187 3.281751 CTTGGCGAGCAACACGTCG 62.282 63.158 0.00 0.00 38.23 5.12
189 190 3.470567 GCGAGCAACACGTCGGAG 61.471 66.667 0.00 0.00 36.67 4.63
190 191 2.254350 CGAGCAACACGTCGGAGA 59.746 61.111 0.00 0.00 32.40 3.71
191 192 1.797933 CGAGCAACACGTCGGAGAG 60.798 63.158 0.00 0.00 36.95 3.20
193 194 1.863662 GAGCAACACGTCGGAGAGGA 61.864 60.000 0.00 0.00 46.48 3.71
194 195 1.733399 GCAACACGTCGGAGAGGAC 60.733 63.158 0.00 0.00 46.48 3.85
200 201 2.876219 GTCGGAGAGGACGGTGTC 59.124 66.667 0.00 0.00 36.95 3.67
201 202 2.745100 TCGGAGAGGACGGTGTCG 60.745 66.667 0.00 0.00 43.02 4.35
202 203 3.812019 CGGAGAGGACGGTGTCGG 61.812 72.222 0.00 0.00 41.39 4.79
203 204 2.360852 GGAGAGGACGGTGTCGGA 60.361 66.667 0.00 0.00 41.39 4.55
204 205 2.408241 GGAGAGGACGGTGTCGGAG 61.408 68.421 0.00 0.00 41.39 4.63
205 206 3.053849 GAGAGGACGGTGTCGGAGC 62.054 68.421 0.00 0.00 41.39 4.70
245 246 4.554036 GAGCCCCTCGTCCATGCC 62.554 72.222 0.00 0.00 0.00 4.40
248 249 4.530857 CCCCTCGTCCATGCCGAC 62.531 72.222 2.04 0.00 0.00 4.79
261 262 3.467119 CCGACGCCGACGAACTTG 61.467 66.667 11.04 0.00 43.93 3.16
262 263 2.728383 CGACGCCGACGAACTTGT 60.728 61.111 2.16 0.00 43.93 3.16
263 264 2.704193 CGACGCCGACGAACTTGTC 61.704 63.158 2.16 0.00 43.93 3.18
271 272 3.479269 CGAACTTGTCGGCGCTCC 61.479 66.667 7.64 0.00 46.45 4.70
272 273 2.357034 GAACTTGTCGGCGCTCCA 60.357 61.111 7.64 0.00 0.00 3.86
273 274 2.665185 AACTTGTCGGCGCTCCAC 60.665 61.111 7.64 1.78 0.00 4.02
274 275 3.165160 AACTTGTCGGCGCTCCACT 62.165 57.895 7.64 0.00 0.00 4.00
275 276 2.357517 CTTGTCGGCGCTCCACTT 60.358 61.111 7.64 0.00 0.00 3.16
276 277 2.357034 TTGTCGGCGCTCCACTTC 60.357 61.111 7.64 0.00 0.00 3.01
277 278 3.876589 TTGTCGGCGCTCCACTTCC 62.877 63.158 7.64 0.00 0.00 3.46
278 279 4.070552 GTCGGCGCTCCACTTCCT 62.071 66.667 7.64 0.00 0.00 3.36
279 280 3.311110 TCGGCGCTCCACTTCCTT 61.311 61.111 7.64 0.00 0.00 3.36
280 281 3.121030 CGGCGCTCCACTTCCTTG 61.121 66.667 7.64 0.00 0.00 3.61
281 282 2.032681 GGCGCTCCACTTCCTTGT 59.967 61.111 7.64 0.00 0.00 3.16
282 283 2.035442 GGCGCTCCACTTCCTTGTC 61.035 63.158 7.64 0.00 0.00 3.18
283 284 2.383527 GCGCTCCACTTCCTTGTCG 61.384 63.158 0.00 0.00 0.00 4.35
284 285 1.289066 CGCTCCACTTCCTTGTCGA 59.711 57.895 0.00 0.00 0.00 4.20
285 286 1.009389 CGCTCCACTTCCTTGTCGAC 61.009 60.000 9.11 9.11 0.00 4.20
286 287 0.670854 GCTCCACTTCCTTGTCGACC 60.671 60.000 14.12 0.00 0.00 4.79
287 288 0.037232 CTCCACTTCCTTGTCGACCC 60.037 60.000 14.12 0.00 0.00 4.46
288 289 0.471211 TCCACTTCCTTGTCGACCCT 60.471 55.000 14.12 0.00 0.00 4.34
289 290 0.320771 CCACTTCCTTGTCGACCCTG 60.321 60.000 14.12 2.81 0.00 4.45
290 291 0.679505 CACTTCCTTGTCGACCCTGA 59.320 55.000 14.12 3.42 0.00 3.86
291 292 1.070134 CACTTCCTTGTCGACCCTGAA 59.930 52.381 14.12 11.25 0.00 3.02
292 293 1.070289 ACTTCCTTGTCGACCCTGAAC 59.930 52.381 14.12 0.00 0.00 3.18
293 294 1.344763 CTTCCTTGTCGACCCTGAACT 59.655 52.381 14.12 0.00 0.00 3.01
294 295 1.420430 TCCTTGTCGACCCTGAACTT 58.580 50.000 14.12 0.00 0.00 2.66
295 296 1.070134 TCCTTGTCGACCCTGAACTTG 59.930 52.381 14.12 0.00 0.00 3.16
296 297 1.202651 CCTTGTCGACCCTGAACTTGT 60.203 52.381 14.12 0.00 0.00 3.16
297 298 2.561569 CTTGTCGACCCTGAACTTGTT 58.438 47.619 14.12 0.00 0.00 2.83
298 299 1.948104 TGTCGACCCTGAACTTGTTG 58.052 50.000 14.12 0.00 0.00 3.33
299 300 1.483004 TGTCGACCCTGAACTTGTTGA 59.517 47.619 14.12 0.00 0.00 3.18
300 301 2.104111 TGTCGACCCTGAACTTGTTGAT 59.896 45.455 14.12 0.00 0.00 2.57
301 302 2.480419 GTCGACCCTGAACTTGTTGATG 59.520 50.000 3.51 0.00 0.00 3.07
302 303 1.197721 CGACCCTGAACTTGTTGATGC 59.802 52.381 0.00 0.00 0.00 3.91
303 304 2.508526 GACCCTGAACTTGTTGATGCT 58.491 47.619 0.00 0.00 0.00 3.79
304 305 2.227388 GACCCTGAACTTGTTGATGCTG 59.773 50.000 0.00 0.00 0.00 4.41
305 306 1.542915 CCCTGAACTTGTTGATGCTGG 59.457 52.381 0.00 0.00 0.00 4.85
306 307 2.507484 CCTGAACTTGTTGATGCTGGA 58.493 47.619 0.00 0.00 0.00 3.86
307 308 2.486982 CCTGAACTTGTTGATGCTGGAG 59.513 50.000 0.00 0.00 0.00 3.86
308 309 3.405831 CTGAACTTGTTGATGCTGGAGA 58.594 45.455 0.00 0.00 0.00 3.71
309 310 4.008330 CTGAACTTGTTGATGCTGGAGAT 58.992 43.478 0.00 0.00 0.00 2.75
310 311 3.754850 TGAACTTGTTGATGCTGGAGATG 59.245 43.478 0.00 0.00 0.00 2.90
311 312 2.719739 ACTTGTTGATGCTGGAGATGG 58.280 47.619 0.00 0.00 0.00 3.51
312 313 1.404391 CTTGTTGATGCTGGAGATGGC 59.596 52.381 0.00 0.00 0.00 4.40
313 314 0.622136 TGTTGATGCTGGAGATGGCT 59.378 50.000 0.00 0.00 0.00 4.75
314 315 1.022735 GTTGATGCTGGAGATGGCTG 58.977 55.000 0.00 0.00 0.00 4.85
315 316 0.913924 TTGATGCTGGAGATGGCTGA 59.086 50.000 0.00 0.00 0.00 4.26
316 317 0.913924 TGATGCTGGAGATGGCTGAA 59.086 50.000 0.00 0.00 0.00 3.02
317 318 1.307097 GATGCTGGAGATGGCTGAAC 58.693 55.000 0.00 0.00 0.00 3.18
318 319 0.917533 ATGCTGGAGATGGCTGAACT 59.082 50.000 0.00 0.00 0.00 3.01
319 320 0.694771 TGCTGGAGATGGCTGAACTT 59.305 50.000 0.00 0.00 0.00 2.66
320 321 1.339438 TGCTGGAGATGGCTGAACTTC 60.339 52.381 0.00 0.00 0.00 3.01
321 322 1.065564 GCTGGAGATGGCTGAACTTCT 60.066 52.381 0.00 0.00 0.00 2.85
322 323 2.903798 CTGGAGATGGCTGAACTTCTC 58.096 52.381 0.00 0.00 39.58 2.87
323 324 1.205655 TGGAGATGGCTGAACTTCTCG 59.794 52.381 0.00 0.00 40.58 4.04
324 325 1.472376 GGAGATGGCTGAACTTCTCGG 60.472 57.143 0.00 0.00 40.58 4.63
328 329 2.433318 GCTGAACTTCTCGGCGCT 60.433 61.111 7.64 0.00 46.37 5.92
329 330 2.448705 GCTGAACTTCTCGGCGCTC 61.449 63.158 7.64 0.00 46.37 5.03
330 331 1.807573 CTGAACTTCTCGGCGCTCC 60.808 63.158 7.64 0.00 0.00 4.70
331 332 2.261671 GAACTTCTCGGCGCTCCA 59.738 61.111 7.64 0.00 0.00 3.86
332 333 1.807573 GAACTTCTCGGCGCTCCAG 60.808 63.158 7.64 0.28 0.00 3.86
333 334 3.941657 AACTTCTCGGCGCTCCAGC 62.942 63.158 7.64 0.00 37.78 4.85
343 344 3.785859 GCTCCAGCCCATCGGTGA 61.786 66.667 0.00 0.00 42.92 4.02
344 345 2.989639 CTCCAGCCCATCGGTGAA 59.010 61.111 0.00 0.00 42.92 3.18
345 346 1.450312 CTCCAGCCCATCGGTGAAC 60.450 63.158 0.00 0.00 42.92 3.18
346 347 2.819595 CCAGCCCATCGGTGAACG 60.820 66.667 0.00 0.00 42.92 3.95
356 357 4.688419 GGTGAACGACGACGCCGA 62.688 66.667 11.37 0.00 43.96 5.54
357 358 3.164011 GTGAACGACGACGCCGAG 61.164 66.667 11.37 0.00 43.96 4.63
358 359 4.394078 TGAACGACGACGCCGAGG 62.394 66.667 11.37 0.00 43.96 4.63
387 388 4.077188 GCAGACGGCAGCACGAAC 62.077 66.667 0.00 4.41 43.97 3.95
388 389 3.767230 CAGACGGCAGCACGAACG 61.767 66.667 9.87 0.00 37.61 3.95
395 396 3.414700 CAGCACGAACGCCACCTC 61.415 66.667 0.00 0.00 0.00 3.85
398 399 4.657824 CACGAACGCCACCTCGGT 62.658 66.667 0.00 0.00 39.38 4.69
399 400 4.353437 ACGAACGCCACCTCGGTC 62.353 66.667 0.00 0.00 42.32 4.79
404 405 3.900892 CGCCACCTCGGTCGCTAT 61.901 66.667 4.26 0.00 36.97 2.97
405 406 2.027751 GCCACCTCGGTCGCTATC 59.972 66.667 0.00 0.00 36.97 2.08
406 407 2.782222 GCCACCTCGGTCGCTATCA 61.782 63.158 0.00 0.00 36.97 2.15
407 408 1.065928 CCACCTCGGTCGCTATCAC 59.934 63.158 0.00 0.00 0.00 3.06
408 409 1.065928 CACCTCGGTCGCTATCACC 59.934 63.158 0.00 0.00 0.00 4.02
409 410 1.379443 ACCTCGGTCGCTATCACCA 60.379 57.895 0.00 0.00 32.89 4.17
410 411 0.755698 ACCTCGGTCGCTATCACCAT 60.756 55.000 0.00 0.00 32.89 3.55
411 412 0.389391 CCTCGGTCGCTATCACCATT 59.611 55.000 0.00 0.00 32.89 3.16
412 413 1.202533 CCTCGGTCGCTATCACCATTT 60.203 52.381 0.00 0.00 32.89 2.32
413 414 1.860950 CTCGGTCGCTATCACCATTTG 59.139 52.381 0.00 0.00 32.89 2.32
414 415 0.937304 CGGTCGCTATCACCATTTGG 59.063 55.000 0.00 0.00 42.17 3.28
415 416 0.663153 GGTCGCTATCACCATTTGGC 59.337 55.000 0.00 0.00 39.32 4.52
416 417 0.663153 GTCGCTATCACCATTTGGCC 59.337 55.000 0.00 0.00 39.32 5.36
417 418 0.546122 TCGCTATCACCATTTGGCCT 59.454 50.000 3.32 0.00 39.32 5.19
418 419 0.947244 CGCTATCACCATTTGGCCTC 59.053 55.000 3.32 0.00 39.32 4.70
419 420 1.322442 GCTATCACCATTTGGCCTCC 58.678 55.000 3.32 0.00 39.32 4.30
420 421 1.410083 GCTATCACCATTTGGCCTCCA 60.410 52.381 3.32 0.00 39.32 3.86
421 422 2.754186 GCTATCACCATTTGGCCTCCAT 60.754 50.000 3.32 0.00 39.32 3.41
422 423 1.784358 ATCACCATTTGGCCTCCATG 58.216 50.000 3.32 3.21 39.32 3.66
423 424 0.324552 TCACCATTTGGCCTCCATGG 60.325 55.000 20.78 20.78 39.04 3.66
424 425 0.615544 CACCATTTGGCCTCCATGGT 60.616 55.000 21.82 21.82 44.82 3.55
425 426 0.615544 ACCATTTGGCCTCCATGGTG 60.616 55.000 24.96 9.53 43.03 4.17
426 427 1.332144 CCATTTGGCCTCCATGGTGG 61.332 60.000 25.75 25.75 39.43 4.61
427 428 0.615544 CATTTGGCCTCCATGGTGGT 60.616 55.000 29.03 10.41 39.03 4.16
428 429 0.116940 ATTTGGCCTCCATGGTGGTT 59.883 50.000 29.03 10.52 39.03 3.67
429 430 0.831288 TTTGGCCTCCATGGTGGTTG 60.831 55.000 29.03 9.06 39.03 3.77
430 431 2.017668 TTGGCCTCCATGGTGGTTGT 62.018 55.000 29.03 0.00 39.03 3.32
431 432 1.978617 GGCCTCCATGGTGGTTGTG 60.979 63.158 29.03 8.39 39.03 3.33
432 433 1.978617 GCCTCCATGGTGGTTGTGG 60.979 63.158 29.03 14.02 39.03 4.17
433 434 1.978617 CCTCCATGGTGGTTGTGGC 60.979 63.158 22.53 0.00 39.03 5.01
434 435 2.282110 TCCATGGTGGTTGTGGCG 60.282 61.111 12.58 0.00 39.03 5.69
435 436 4.054825 CCATGGTGGTTGTGGCGC 62.055 66.667 2.57 0.00 31.35 6.53
436 437 3.293714 CATGGTGGTTGTGGCGCA 61.294 61.111 10.83 0.00 0.00 6.09
437 438 2.985282 ATGGTGGTTGTGGCGCAG 60.985 61.111 10.83 0.00 0.00 5.18
438 439 3.790416 ATGGTGGTTGTGGCGCAGT 62.790 57.895 10.83 0.00 0.00 4.40
439 440 2.281208 GGTGGTTGTGGCGCAGTA 60.281 61.111 10.83 0.00 0.00 2.74
440 441 2.613506 GGTGGTTGTGGCGCAGTAC 61.614 63.158 10.83 5.66 0.00 2.73
441 442 2.281208 TGGTTGTGGCGCAGTACC 60.281 61.111 10.83 13.71 0.00 3.34
442 443 3.053896 GGTTGTGGCGCAGTACCC 61.054 66.667 10.83 0.00 0.00 3.69
443 444 2.281208 GTTGTGGCGCAGTACCCA 60.281 61.111 10.83 0.00 0.00 4.51
444 445 2.031919 TTGTGGCGCAGTACCCAG 59.968 61.111 10.83 0.00 0.00 4.45
445 446 4.697756 TGTGGCGCAGTACCCAGC 62.698 66.667 10.83 0.00 0.00 4.85
454 455 4.137872 GTACCCAGCGCAGGCGTA 62.138 66.667 14.35 13.86 46.35 4.42
455 456 4.137872 TACCCAGCGCAGGCGTAC 62.138 66.667 14.35 0.00 46.35 3.67
457 458 4.838152 CCCAGCGCAGGCGTACAT 62.838 66.667 14.35 0.00 46.35 2.29
458 459 3.264897 CCAGCGCAGGCGTACATC 61.265 66.667 11.47 0.00 46.35 3.06
459 460 2.202797 CAGCGCAGGCGTACATCT 60.203 61.111 11.47 0.13 46.35 2.90
460 461 1.811266 CAGCGCAGGCGTACATCTT 60.811 57.895 11.47 0.00 46.35 2.40
461 462 1.811266 AGCGCAGGCGTACATCTTG 60.811 57.895 11.47 0.00 46.35 3.02
462 463 2.813179 GCGCAGGCGTACATCTTGG 61.813 63.158 15.64 0.00 42.09 3.61
463 464 2.813179 CGCAGGCGTACATCTTGGC 61.813 63.158 5.34 0.00 34.35 4.52
464 465 1.745115 GCAGGCGTACATCTTGGCA 60.745 57.895 0.00 0.00 0.00 4.92
465 466 1.709147 GCAGGCGTACATCTTGGCAG 61.709 60.000 0.00 0.00 0.00 4.85
466 467 1.450312 AGGCGTACATCTTGGCAGC 60.450 57.895 0.00 0.00 0.00 5.25
467 468 1.745115 GGCGTACATCTTGGCAGCA 60.745 57.895 0.00 0.00 0.00 4.41
468 469 1.425428 GCGTACATCTTGGCAGCAC 59.575 57.895 0.00 0.00 0.00 4.40
469 470 1.021390 GCGTACATCTTGGCAGCACT 61.021 55.000 0.00 0.00 0.00 4.40
470 471 1.739035 GCGTACATCTTGGCAGCACTA 60.739 52.381 0.00 0.00 0.00 2.74
471 472 2.196749 CGTACATCTTGGCAGCACTAG 58.803 52.381 0.00 0.00 0.00 2.57
472 473 1.936547 GTACATCTTGGCAGCACTAGC 59.063 52.381 0.00 0.00 42.56 3.42
478 479 4.436998 GGCAGCACTAGCCGACGT 62.437 66.667 0.00 0.00 43.15 4.34
479 480 2.881352 GCAGCACTAGCCGACGTC 60.881 66.667 5.18 5.18 43.56 4.34
480 481 2.202623 CAGCACTAGCCGACGTCC 60.203 66.667 10.58 0.00 43.56 4.79
481 482 3.450115 AGCACTAGCCGACGTCCC 61.450 66.667 10.58 0.95 43.56 4.46
482 483 4.849329 GCACTAGCCGACGTCCCG 62.849 72.222 10.58 0.00 33.58 5.14
483 484 3.129502 CACTAGCCGACGTCCCGA 61.130 66.667 10.58 0.00 0.00 5.14
484 485 2.823147 ACTAGCCGACGTCCCGAG 60.823 66.667 10.58 9.42 0.00 4.63
566 567 1.616865 GCACGGTATATGTAGGAGGCA 59.383 52.381 0.00 0.00 0.00 4.75
587 588 2.361104 AAATCCATGGCACGGCGT 60.361 55.556 6.77 6.77 0.00 5.68
593 594 1.739929 CATGGCACGGCGTAGTTGA 60.740 57.895 14.22 0.00 0.00 3.18
655 661 6.154363 TCAAAAGAAGTTCACTGGGTCAAAAT 59.846 34.615 5.50 0.00 0.00 1.82
665 671 5.067674 TCACTGGGTCAAAATTGAAGTTCAG 59.932 40.000 5.56 6.20 39.21 3.02
717 724 0.472471 TGGTTCTCGCCTCCAAGTTT 59.528 50.000 0.00 0.00 0.00 2.66
801 808 3.243771 ACTCTTGGTGTCACCGTAGAAAG 60.244 47.826 20.84 16.33 42.58 2.62
805 812 2.631062 TGGTGTCACCGTAGAAAGTCAT 59.369 45.455 17.27 0.00 42.58 3.06
968 1003 0.825010 CAAAGACAAGCCCACCTGCT 60.825 55.000 0.00 0.00 45.43 4.24
969 1004 0.825010 AAAGACAAGCCCACCTGCTG 60.825 55.000 0.00 0.00 41.80 4.41
1025 1060 1.456296 GCATCATGTGAGTTCAGGCA 58.544 50.000 0.00 0.00 0.00 4.75
1167 1410 4.796231 GCAGACGCCGACGGTGAT 62.796 66.667 32.86 17.99 46.04 3.06
1241 1484 2.476199 CAAGGAGGAAGAGGGAGACAT 58.524 52.381 0.00 0.00 0.00 3.06
1347 1590 2.573869 CTGCACCTGGACGTCGAT 59.426 61.111 9.92 0.00 0.00 3.59
1362 1613 1.890979 CGATGAGTGCCAGGCCATC 60.891 63.158 9.64 13.53 33.86 3.51
1597 1967 4.928615 TGAGAAAAACAAAGTGCCAAACTG 59.071 37.500 0.00 0.00 39.81 3.16
1603 1973 5.605564 AACAAAGTGCCAAACTGAAAAAC 57.394 34.783 0.00 0.00 39.81 2.43
1743 2159 5.878116 TGGTCCTAATTAAAACAGATGGACG 59.122 40.000 9.08 0.00 42.39 4.79
1745 2161 6.766467 GGTCCTAATTAAAACAGATGGACGAT 59.234 38.462 9.08 0.00 42.39 3.73
1859 2279 5.055642 TCAATACAACACTACTCCTCACG 57.944 43.478 0.00 0.00 0.00 4.35
2427 2847 0.177141 GCACCGAGTAGTGGCCATTA 59.823 55.000 9.72 6.20 38.24 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.615496 CGAACCCACAACTAGTTATTCGG 59.385 47.826 19.72 14.64 34.80 4.30
3 4 5.163513 CGTACGAACCCACAACTAGTTATT 58.836 41.667 10.44 0.00 0.00 1.40
4 5 4.218417 ACGTACGAACCCACAACTAGTTAT 59.782 41.667 24.41 0.00 0.00 1.89
6 7 2.362077 ACGTACGAACCCACAACTAGTT 59.638 45.455 24.41 1.12 0.00 2.24
7 8 1.956477 ACGTACGAACCCACAACTAGT 59.044 47.619 24.41 0.00 0.00 2.57
8 9 2.712057 ACGTACGAACCCACAACTAG 57.288 50.000 24.41 0.00 0.00 2.57
9 10 2.360483 TGAACGTACGAACCCACAACTA 59.640 45.455 24.41 0.00 0.00 2.24
10 11 1.136695 TGAACGTACGAACCCACAACT 59.863 47.619 24.41 0.00 0.00 3.16
11 12 1.523934 CTGAACGTACGAACCCACAAC 59.476 52.381 24.41 2.87 0.00 3.32
12 13 1.408340 TCTGAACGTACGAACCCACAA 59.592 47.619 24.41 0.00 0.00 3.33
13 14 1.031235 TCTGAACGTACGAACCCACA 58.969 50.000 24.41 10.67 0.00 4.17
14 15 1.000938 AGTCTGAACGTACGAACCCAC 60.001 52.381 24.41 12.22 0.00 4.61
15 16 1.001048 CAGTCTGAACGTACGAACCCA 60.001 52.381 24.41 12.10 0.00 4.51
16 17 1.000938 ACAGTCTGAACGTACGAACCC 60.001 52.381 24.41 8.03 0.00 4.11
17 18 2.049228 CACAGTCTGAACGTACGAACC 58.951 52.381 24.41 10.56 0.00 3.62
18 19 2.049228 CCACAGTCTGAACGTACGAAC 58.951 52.381 24.41 15.11 0.00 3.95
19 20 1.948834 TCCACAGTCTGAACGTACGAA 59.051 47.619 24.41 6.08 0.00 3.85
20 21 1.596603 TCCACAGTCTGAACGTACGA 58.403 50.000 24.41 0.00 0.00 3.43
21 22 2.410785 TTCCACAGTCTGAACGTACG 57.589 50.000 15.01 15.01 0.00 3.67
22 23 3.057734 CCTTTCCACAGTCTGAACGTAC 58.942 50.000 6.91 0.00 0.00 3.67
23 24 2.696707 ACCTTTCCACAGTCTGAACGTA 59.303 45.455 6.91 0.00 0.00 3.57
24 25 1.485066 ACCTTTCCACAGTCTGAACGT 59.515 47.619 6.91 0.00 0.00 3.99
25 26 1.867233 CACCTTTCCACAGTCTGAACG 59.133 52.381 6.91 0.00 0.00 3.95
26 27 2.222027 CCACCTTTCCACAGTCTGAAC 58.778 52.381 6.91 0.00 0.00 3.18
27 28 1.476833 GCCACCTTTCCACAGTCTGAA 60.477 52.381 6.91 0.00 0.00 3.02
28 29 0.108585 GCCACCTTTCCACAGTCTGA 59.891 55.000 6.91 0.00 0.00 3.27
29 30 0.109342 AGCCACCTTTCCACAGTCTG 59.891 55.000 0.00 0.00 0.00 3.51
30 31 0.109342 CAGCCACCTTTCCACAGTCT 59.891 55.000 0.00 0.00 0.00 3.24
31 32 0.179018 ACAGCCACCTTTCCACAGTC 60.179 55.000 0.00 0.00 0.00 3.51
32 33 1.136828 TACAGCCACCTTTCCACAGT 58.863 50.000 0.00 0.00 0.00 3.55
33 34 2.496899 ATACAGCCACCTTTCCACAG 57.503 50.000 0.00 0.00 0.00 3.66
34 35 2.969821 AATACAGCCACCTTTCCACA 57.030 45.000 0.00 0.00 0.00 4.17
35 36 3.056821 GGAAAATACAGCCACCTTTCCAC 60.057 47.826 6.95 0.00 42.97 4.02
36 37 3.161866 GGAAAATACAGCCACCTTTCCA 58.838 45.455 6.95 0.00 42.97 3.53
37 38 2.163613 CGGAAAATACAGCCACCTTTCC 59.836 50.000 0.00 0.00 41.00 3.13
38 39 2.817844 ACGGAAAATACAGCCACCTTTC 59.182 45.455 0.00 0.00 0.00 2.62
39 40 2.817844 GACGGAAAATACAGCCACCTTT 59.182 45.455 0.00 0.00 0.00 3.11
40 41 2.433436 GACGGAAAATACAGCCACCTT 58.567 47.619 0.00 0.00 0.00 3.50
41 42 1.339727 GGACGGAAAATACAGCCACCT 60.340 52.381 0.00 0.00 0.00 4.00
42 43 1.092348 GGACGGAAAATACAGCCACC 58.908 55.000 0.00 0.00 0.00 4.61
43 44 1.816074 TGGACGGAAAATACAGCCAC 58.184 50.000 0.00 0.00 0.00 5.01
44 45 2.752354 CAATGGACGGAAAATACAGCCA 59.248 45.455 0.00 0.00 0.00 4.75
45 46 2.479560 GCAATGGACGGAAAATACAGCC 60.480 50.000 0.00 0.00 0.00 4.85
46 47 2.479560 GGCAATGGACGGAAAATACAGC 60.480 50.000 0.00 0.00 0.00 4.40
47 48 2.752354 TGGCAATGGACGGAAAATACAG 59.248 45.455 0.00 0.00 0.00 2.74
48 49 2.490115 GTGGCAATGGACGGAAAATACA 59.510 45.455 0.00 0.00 0.00 2.29
49 50 2.477189 CGTGGCAATGGACGGAAAATAC 60.477 50.000 0.00 0.00 31.84 1.89
50 51 1.740585 CGTGGCAATGGACGGAAAATA 59.259 47.619 0.00 0.00 31.84 1.40
51 52 0.525761 CGTGGCAATGGACGGAAAAT 59.474 50.000 0.00 0.00 31.84 1.82
52 53 0.820074 ACGTGGCAATGGACGGAAAA 60.820 50.000 0.00 0.00 39.94 2.29
53 54 0.820074 AACGTGGCAATGGACGGAAA 60.820 50.000 0.00 0.00 39.94 3.13
54 55 1.228003 AACGTGGCAATGGACGGAA 60.228 52.632 0.00 0.00 39.94 4.30
55 56 1.963855 CAACGTGGCAATGGACGGA 60.964 57.895 0.00 0.00 39.94 4.69
56 57 1.911293 CTCAACGTGGCAATGGACGG 61.911 60.000 0.00 0.00 39.94 4.79
57 58 1.497278 CTCAACGTGGCAATGGACG 59.503 57.895 0.00 0.00 41.41 4.79
58 59 1.210155 GCTCAACGTGGCAATGGAC 59.790 57.895 0.00 0.00 0.00 4.02
59 60 1.073025 AGCTCAACGTGGCAATGGA 59.927 52.632 10.26 0.00 0.00 3.41
60 61 1.210931 CAGCTCAACGTGGCAATGG 59.789 57.895 10.26 0.00 0.00 3.16
61 62 0.386352 CACAGCTCAACGTGGCAATG 60.386 55.000 10.26 4.39 0.00 2.82
62 63 0.819259 ACACAGCTCAACGTGGCAAT 60.819 50.000 6.83 0.00 37.45 3.56
63 64 1.436195 GACACAGCTCAACGTGGCAA 61.436 55.000 2.96 0.00 41.06 4.52
64 65 1.887242 GACACAGCTCAACGTGGCA 60.887 57.895 2.96 0.00 41.06 4.92
65 66 2.607892 GGACACAGCTCAACGTGGC 61.608 63.158 6.83 3.22 40.64 5.01
66 67 1.961277 GGGACACAGCTCAACGTGG 60.961 63.158 6.83 0.00 37.45 4.94
67 68 2.310233 CGGGACACAGCTCAACGTG 61.310 63.158 0.00 0.61 39.10 4.49
68 69 1.457823 TACGGGACACAGCTCAACGT 61.458 55.000 0.00 0.00 36.93 3.99
69 70 0.108804 ATACGGGACACAGCTCAACG 60.109 55.000 0.00 0.00 0.00 4.10
70 71 2.000447 GAATACGGGACACAGCTCAAC 59.000 52.381 0.00 0.00 0.00 3.18
71 72 1.066430 GGAATACGGGACACAGCTCAA 60.066 52.381 0.00 0.00 0.00 3.02
72 73 0.535335 GGAATACGGGACACAGCTCA 59.465 55.000 0.00 0.00 0.00 4.26
73 74 0.535335 TGGAATACGGGACACAGCTC 59.465 55.000 0.00 0.00 0.00 4.09
74 75 1.204146 ATGGAATACGGGACACAGCT 58.796 50.000 0.00 0.00 0.00 4.24
75 76 2.902705 TATGGAATACGGGACACAGC 57.097 50.000 0.00 0.00 0.00 4.40
76 77 3.728845 CCTTATGGAATACGGGACACAG 58.271 50.000 0.00 0.00 34.75 3.66
77 78 2.158871 GCCTTATGGAATACGGGACACA 60.159 50.000 0.00 0.00 38.56 3.72
78 79 2.158871 TGCCTTATGGAATACGGGACAC 60.159 50.000 0.00 0.00 38.56 3.67
79 80 2.120312 TGCCTTATGGAATACGGGACA 58.880 47.619 0.00 0.00 38.56 4.02
80 81 2.922740 TGCCTTATGGAATACGGGAC 57.077 50.000 0.00 0.00 38.56 4.46
81 82 5.072600 AGTTATTGCCTTATGGAATACGGGA 59.927 40.000 0.00 0.00 38.56 5.14
82 83 5.313712 AGTTATTGCCTTATGGAATACGGG 58.686 41.667 0.00 0.00 38.56 5.28
83 84 5.120208 CGAGTTATTGCCTTATGGAATACGG 59.880 44.000 0.00 0.00 40.93 4.02
84 85 5.120208 CCGAGTTATTGCCTTATGGAATACG 59.880 44.000 0.00 0.00 34.57 3.06
85 86 5.995897 ACCGAGTTATTGCCTTATGGAATAC 59.004 40.000 0.00 0.00 34.57 1.89
86 87 6.182507 ACCGAGTTATTGCCTTATGGAATA 57.817 37.500 0.00 0.00 34.57 1.75
87 88 5.048846 ACCGAGTTATTGCCTTATGGAAT 57.951 39.130 0.00 0.00 34.57 3.01
88 89 4.497291 ACCGAGTTATTGCCTTATGGAA 57.503 40.909 0.00 0.00 34.57 3.53
89 90 4.652421 ACTACCGAGTTATTGCCTTATGGA 59.348 41.667 0.00 0.00 29.78 3.41
90 91 4.750098 CACTACCGAGTTATTGCCTTATGG 59.250 45.833 0.00 0.00 31.73 2.74
91 92 4.750098 CCACTACCGAGTTATTGCCTTATG 59.250 45.833 0.00 0.00 31.73 1.90
92 93 4.652421 TCCACTACCGAGTTATTGCCTTAT 59.348 41.667 0.00 0.00 31.73 1.73
93 94 4.025360 TCCACTACCGAGTTATTGCCTTA 58.975 43.478 0.00 0.00 31.73 2.69
94 95 2.835764 TCCACTACCGAGTTATTGCCTT 59.164 45.455 0.00 0.00 31.73 4.35
95 96 2.463752 TCCACTACCGAGTTATTGCCT 58.536 47.619 0.00 0.00 31.73 4.75
96 97 2.973694 TCCACTACCGAGTTATTGCC 57.026 50.000 0.00 0.00 31.73 4.52
97 98 4.119442 TCTTCCACTACCGAGTTATTGC 57.881 45.455 0.00 0.00 31.73 3.56
98 99 7.429636 TTTTTCTTCCACTACCGAGTTATTG 57.570 36.000 0.00 0.00 31.73 1.90
99 100 8.631480 AATTTTTCTTCCACTACCGAGTTATT 57.369 30.769 0.00 0.00 31.73 1.40
100 101 9.159364 GTAATTTTTCTTCCACTACCGAGTTAT 57.841 33.333 0.00 0.00 31.73 1.89
101 102 8.370182 AGTAATTTTTCTTCCACTACCGAGTTA 58.630 33.333 0.00 0.00 31.73 2.24
102 103 7.222161 AGTAATTTTTCTTCCACTACCGAGTT 58.778 34.615 0.00 0.00 31.73 3.01
103 104 6.766429 AGTAATTTTTCTTCCACTACCGAGT 58.234 36.000 0.00 0.00 35.80 4.18
104 105 7.063544 CAGAGTAATTTTTCTTCCACTACCGAG 59.936 40.741 0.00 0.00 0.00 4.63
105 106 6.872020 CAGAGTAATTTTTCTTCCACTACCGA 59.128 38.462 0.00 0.00 0.00 4.69
106 107 6.872020 TCAGAGTAATTTTTCTTCCACTACCG 59.128 38.462 0.00 0.00 0.00 4.02
107 108 7.660208 TGTCAGAGTAATTTTTCTTCCACTACC 59.340 37.037 0.00 0.00 0.00 3.18
108 109 8.603242 TGTCAGAGTAATTTTTCTTCCACTAC 57.397 34.615 0.00 0.00 0.00 2.73
109 110 9.436957 GATGTCAGAGTAATTTTTCTTCCACTA 57.563 33.333 0.00 0.00 0.00 2.74
110 111 7.118390 CGATGTCAGAGTAATTTTTCTTCCACT 59.882 37.037 0.00 0.00 0.00 4.00
111 112 7.237173 CGATGTCAGAGTAATTTTTCTTCCAC 58.763 38.462 0.00 0.00 0.00 4.02
112 113 6.371548 CCGATGTCAGAGTAATTTTTCTTCCA 59.628 38.462 0.00 0.00 0.00 3.53
113 114 6.675728 GCCGATGTCAGAGTAATTTTTCTTCC 60.676 42.308 0.00 0.00 0.00 3.46
114 115 6.128282 TGCCGATGTCAGAGTAATTTTTCTTC 60.128 38.462 0.00 0.00 0.00 2.87
115 116 5.705441 TGCCGATGTCAGAGTAATTTTTCTT 59.295 36.000 0.00 0.00 0.00 2.52
116 117 5.122396 GTGCCGATGTCAGAGTAATTTTTCT 59.878 40.000 0.00 0.00 0.00 2.52
117 118 5.324697 GTGCCGATGTCAGAGTAATTTTTC 58.675 41.667 0.00 0.00 0.00 2.29
118 119 4.142902 CGTGCCGATGTCAGAGTAATTTTT 60.143 41.667 0.00 0.00 0.00 1.94
119 120 3.370978 CGTGCCGATGTCAGAGTAATTTT 59.629 43.478 0.00 0.00 0.00 1.82
120 121 2.930040 CGTGCCGATGTCAGAGTAATTT 59.070 45.455 0.00 0.00 0.00 1.82
121 122 2.094182 ACGTGCCGATGTCAGAGTAATT 60.094 45.455 1.50 0.00 0.00 1.40
122 123 1.476891 ACGTGCCGATGTCAGAGTAAT 59.523 47.619 1.50 0.00 0.00 1.89
123 124 0.885879 ACGTGCCGATGTCAGAGTAA 59.114 50.000 1.50 0.00 0.00 2.24
124 125 0.885879 AACGTGCCGATGTCAGAGTA 59.114 50.000 0.00 0.00 0.00 2.59
125 126 0.388649 GAACGTGCCGATGTCAGAGT 60.389 55.000 0.00 0.00 0.00 3.24
126 127 1.406219 CGAACGTGCCGATGTCAGAG 61.406 60.000 4.82 0.00 0.00 3.35
127 128 1.443702 CGAACGTGCCGATGTCAGA 60.444 57.895 4.82 0.00 0.00 3.27
128 129 2.444624 CCGAACGTGCCGATGTCAG 61.445 63.158 11.52 0.00 0.00 3.51
129 130 1.864725 TACCGAACGTGCCGATGTCA 61.865 55.000 11.52 0.00 0.00 3.58
130 131 1.153978 TACCGAACGTGCCGATGTC 60.154 57.895 11.52 0.00 0.00 3.06
131 132 1.444895 GTACCGAACGTGCCGATGT 60.445 57.895 11.52 5.30 0.00 3.06
132 133 0.804544 ATGTACCGAACGTGCCGATG 60.805 55.000 11.52 0.00 0.00 3.84
133 134 0.804544 CATGTACCGAACGTGCCGAT 60.805 55.000 11.52 0.00 38.25 4.18
134 135 1.444724 CATGTACCGAACGTGCCGA 60.445 57.895 11.52 0.00 38.25 5.54
135 136 3.077705 CATGTACCGAACGTGCCG 58.922 61.111 0.00 0.00 38.25 5.69
138 139 1.700029 GACGCATGTACCGAACGTG 59.300 57.895 5.25 5.90 46.25 4.49
139 140 1.798725 CGACGCATGTACCGAACGT 60.799 57.895 0.00 0.73 40.11 3.99
140 141 0.864377 ATCGACGCATGTACCGAACG 60.864 55.000 8.89 8.53 34.59 3.95
141 142 0.844503 GATCGACGCATGTACCGAAC 59.155 55.000 8.89 4.18 34.59 3.95
142 143 0.452585 TGATCGACGCATGTACCGAA 59.547 50.000 8.89 0.00 34.59 4.30
143 144 0.248336 GTGATCGACGCATGTACCGA 60.248 55.000 7.63 7.63 35.43 4.69
144 145 0.248498 AGTGATCGACGCATGTACCG 60.248 55.000 0.00 0.00 0.00 4.02
145 146 1.588404 CAAGTGATCGACGCATGTACC 59.412 52.381 0.00 0.00 0.00 3.34
146 147 2.259618 ACAAGTGATCGACGCATGTAC 58.740 47.619 7.36 0.00 38.79 2.90
147 148 2.647529 ACAAGTGATCGACGCATGTA 57.352 45.000 7.36 0.00 38.79 2.29
148 149 1.726791 GAACAAGTGATCGACGCATGT 59.273 47.619 0.00 0.00 41.60 3.21
149 150 1.995484 AGAACAAGTGATCGACGCATG 59.005 47.619 0.00 0.00 34.48 4.06
150 151 2.370281 AGAACAAGTGATCGACGCAT 57.630 45.000 0.00 0.00 0.00 4.73
151 152 1.792367 CAAGAACAAGTGATCGACGCA 59.208 47.619 0.00 0.00 0.00 5.24
152 153 1.126846 CCAAGAACAAGTGATCGACGC 59.873 52.381 0.00 0.00 0.00 5.19
153 154 1.126846 GCCAAGAACAAGTGATCGACG 59.873 52.381 0.00 0.00 0.00 5.12
154 155 1.126846 CGCCAAGAACAAGTGATCGAC 59.873 52.381 0.00 0.00 0.00 4.20
155 156 1.000394 TCGCCAAGAACAAGTGATCGA 60.000 47.619 0.00 0.00 0.00 3.59
156 157 1.391485 CTCGCCAAGAACAAGTGATCG 59.609 52.381 0.00 0.00 0.00 3.69
157 158 1.129437 GCTCGCCAAGAACAAGTGATC 59.871 52.381 0.00 0.00 0.00 2.92
158 159 1.160137 GCTCGCCAAGAACAAGTGAT 58.840 50.000 0.00 0.00 0.00 3.06
159 160 0.179059 TGCTCGCCAAGAACAAGTGA 60.179 50.000 0.00 0.00 0.00 3.41
160 161 0.662619 TTGCTCGCCAAGAACAAGTG 59.337 50.000 0.00 0.00 30.70 3.16
161 162 0.663153 GTTGCTCGCCAAGAACAAGT 59.337 50.000 0.00 0.00 35.81 3.16
162 163 0.662619 TGTTGCTCGCCAAGAACAAG 59.337 50.000 0.00 0.00 35.81 3.16
163 164 0.380378 GTGTTGCTCGCCAAGAACAA 59.620 50.000 0.00 0.00 33.01 2.83
164 165 1.771073 CGTGTTGCTCGCCAAGAACA 61.771 55.000 0.00 0.00 33.21 3.18
165 166 1.082756 CGTGTTGCTCGCCAAGAAC 60.083 57.895 0.00 0.00 33.21 3.01
166 167 1.495584 GACGTGTTGCTCGCCAAGAA 61.496 55.000 0.00 0.00 33.21 2.52
167 168 1.954146 GACGTGTTGCTCGCCAAGA 60.954 57.895 0.00 0.00 33.21 3.02
168 169 2.551270 GACGTGTTGCTCGCCAAG 59.449 61.111 0.00 0.00 33.21 3.61
169 170 3.334751 CGACGTGTTGCTCGCCAA 61.335 61.111 0.00 0.00 0.00 4.52
172 173 3.470567 CTCCGACGTGTTGCTCGC 61.471 66.667 0.00 0.00 0.00 5.03
173 174 1.797933 CTCTCCGACGTGTTGCTCG 60.798 63.158 0.00 0.00 0.00 5.03
174 175 1.444553 CCTCTCCGACGTGTTGCTC 60.445 63.158 0.00 0.00 0.00 4.26
175 176 1.901948 TCCTCTCCGACGTGTTGCT 60.902 57.895 0.00 0.00 0.00 3.91
176 177 1.733399 GTCCTCTCCGACGTGTTGC 60.733 63.158 0.00 0.00 0.00 4.17
177 178 4.554163 GTCCTCTCCGACGTGTTG 57.446 61.111 0.00 0.00 0.00 3.33
183 184 2.876219 GACACCGTCCTCTCCGAC 59.124 66.667 0.00 0.00 0.00 4.79
184 185 2.745100 CGACACCGTCCTCTCCGA 60.745 66.667 0.00 0.00 0.00 4.55
185 186 3.812019 CCGACACCGTCCTCTCCG 61.812 72.222 0.00 0.00 0.00 4.63
186 187 2.360852 TCCGACACCGTCCTCTCC 60.361 66.667 0.00 0.00 0.00 3.71
187 188 3.053849 GCTCCGACACCGTCCTCTC 62.054 68.421 0.00 0.00 0.00 3.20
188 189 3.063084 GCTCCGACACCGTCCTCT 61.063 66.667 0.00 0.00 0.00 3.69
189 190 4.477975 CGCTCCGACACCGTCCTC 62.478 72.222 0.00 0.00 0.00 3.71
192 193 4.477975 CTCCGCTCCGACACCGTC 62.478 72.222 0.00 0.00 0.00 4.79
215 216 4.168291 GGCTCGGCCTCCTCAAGG 62.168 72.222 0.00 0.00 46.69 3.61
228 229 4.554036 GGCATGGACGAGGGGCTC 62.554 72.222 0.00 0.00 0.00 4.70
231 232 4.530857 GTCGGCATGGACGAGGGG 62.531 72.222 0.00 0.00 46.55 4.79
244 245 3.467119 CAAGTTCGTCGGCGTCGG 61.467 66.667 24.52 6.06 39.49 4.79
245 246 2.704193 GACAAGTTCGTCGGCGTCG 61.704 63.158 19.85 19.85 39.49 5.12
246 247 3.144605 GACAAGTTCGTCGGCGTC 58.855 61.111 10.18 4.10 39.49 5.19
255 256 2.357034 TGGAGCGCCGACAAGTTC 60.357 61.111 2.29 0.00 36.79 3.01
256 257 2.660258 AAGTGGAGCGCCGACAAGTT 62.660 55.000 2.29 0.00 36.79 2.66
257 258 3.165160 AAGTGGAGCGCCGACAAGT 62.165 57.895 2.29 0.00 36.79 3.16
258 259 2.357517 AAGTGGAGCGCCGACAAG 60.358 61.111 2.29 0.00 36.79 3.16
259 260 2.357034 GAAGTGGAGCGCCGACAA 60.357 61.111 2.29 0.00 36.79 3.18
260 261 4.373116 GGAAGTGGAGCGCCGACA 62.373 66.667 2.29 0.00 36.79 4.35
261 262 3.591254 AAGGAAGTGGAGCGCCGAC 62.591 63.158 2.29 3.05 36.79 4.79
262 263 3.311110 AAGGAAGTGGAGCGCCGA 61.311 61.111 2.29 0.00 36.79 5.54
263 264 3.121030 CAAGGAAGTGGAGCGCCG 61.121 66.667 2.29 0.00 36.79 6.46
264 265 2.032681 ACAAGGAAGTGGAGCGCC 59.967 61.111 2.29 0.00 0.00 6.53
265 266 2.383527 CGACAAGGAAGTGGAGCGC 61.384 63.158 0.00 0.00 0.00 5.92
266 267 1.009389 GTCGACAAGGAAGTGGAGCG 61.009 60.000 11.55 0.00 0.00 5.03
267 268 0.670854 GGTCGACAAGGAAGTGGAGC 60.671 60.000 18.91 0.00 37.52 4.70
268 269 0.037232 GGGTCGACAAGGAAGTGGAG 60.037 60.000 18.91 0.00 0.00 3.86
269 270 0.471211 AGGGTCGACAAGGAAGTGGA 60.471 55.000 18.91 0.00 0.00 4.02
270 271 0.320771 CAGGGTCGACAAGGAAGTGG 60.321 60.000 18.91 0.00 0.00 4.00
271 272 0.679505 TCAGGGTCGACAAGGAAGTG 59.320 55.000 18.91 3.53 0.00 3.16
272 273 1.070289 GTTCAGGGTCGACAAGGAAGT 59.930 52.381 18.91 0.00 0.00 3.01
273 274 1.344763 AGTTCAGGGTCGACAAGGAAG 59.655 52.381 18.91 0.70 0.00 3.46
274 275 1.420430 AGTTCAGGGTCGACAAGGAA 58.580 50.000 18.91 13.64 0.00 3.36
275 276 1.070134 CAAGTTCAGGGTCGACAAGGA 59.930 52.381 18.91 8.02 0.00 3.36
276 277 1.202651 ACAAGTTCAGGGTCGACAAGG 60.203 52.381 18.91 5.56 0.00 3.61
277 278 2.240493 ACAAGTTCAGGGTCGACAAG 57.760 50.000 18.91 6.34 0.00 3.16
278 279 2.093394 TCAACAAGTTCAGGGTCGACAA 60.093 45.455 18.91 0.00 0.00 3.18
279 280 1.483004 TCAACAAGTTCAGGGTCGACA 59.517 47.619 18.91 0.00 0.00 4.35
280 281 2.234300 TCAACAAGTTCAGGGTCGAC 57.766 50.000 7.13 7.13 0.00 4.20
281 282 2.766313 CATCAACAAGTTCAGGGTCGA 58.234 47.619 0.00 0.00 0.00 4.20
282 283 1.197721 GCATCAACAAGTTCAGGGTCG 59.802 52.381 0.00 0.00 0.00 4.79
283 284 2.227388 CAGCATCAACAAGTTCAGGGTC 59.773 50.000 0.00 0.00 0.00 4.46
284 285 2.233271 CAGCATCAACAAGTTCAGGGT 58.767 47.619 0.00 0.00 0.00 4.34
285 286 1.542915 CCAGCATCAACAAGTTCAGGG 59.457 52.381 0.00 0.00 0.00 4.45
286 287 2.486982 CTCCAGCATCAACAAGTTCAGG 59.513 50.000 0.00 0.00 0.00 3.86
287 288 3.405831 TCTCCAGCATCAACAAGTTCAG 58.594 45.455 0.00 0.00 0.00 3.02
288 289 3.490439 TCTCCAGCATCAACAAGTTCA 57.510 42.857 0.00 0.00 0.00 3.18
289 290 3.128242 CCATCTCCAGCATCAACAAGTTC 59.872 47.826 0.00 0.00 0.00 3.01
290 291 3.087031 CCATCTCCAGCATCAACAAGTT 58.913 45.455 0.00 0.00 0.00 2.66
291 292 2.719739 CCATCTCCAGCATCAACAAGT 58.280 47.619 0.00 0.00 0.00 3.16
292 293 1.404391 GCCATCTCCAGCATCAACAAG 59.596 52.381 0.00 0.00 0.00 3.16
293 294 1.005097 AGCCATCTCCAGCATCAACAA 59.995 47.619 0.00 0.00 0.00 2.83
294 295 0.622136 AGCCATCTCCAGCATCAACA 59.378 50.000 0.00 0.00 0.00 3.33
295 296 1.022735 CAGCCATCTCCAGCATCAAC 58.977 55.000 0.00 0.00 0.00 3.18
296 297 0.913924 TCAGCCATCTCCAGCATCAA 59.086 50.000 0.00 0.00 0.00 2.57
297 298 0.913924 TTCAGCCATCTCCAGCATCA 59.086 50.000 0.00 0.00 0.00 3.07
298 299 1.134159 AGTTCAGCCATCTCCAGCATC 60.134 52.381 0.00 0.00 0.00 3.91
299 300 0.917533 AGTTCAGCCATCTCCAGCAT 59.082 50.000 0.00 0.00 0.00 3.79
300 301 0.694771 AAGTTCAGCCATCTCCAGCA 59.305 50.000 0.00 0.00 0.00 4.41
301 302 1.065564 AGAAGTTCAGCCATCTCCAGC 60.066 52.381 5.50 0.00 0.00 4.85
302 303 2.738000 CGAGAAGTTCAGCCATCTCCAG 60.738 54.545 5.50 0.00 35.91 3.86
303 304 1.205655 CGAGAAGTTCAGCCATCTCCA 59.794 52.381 5.50 0.00 35.91 3.86
304 305 1.472376 CCGAGAAGTTCAGCCATCTCC 60.472 57.143 5.50 0.00 35.91 3.71
305 306 1.933247 CCGAGAAGTTCAGCCATCTC 58.067 55.000 5.50 0.00 35.95 2.75
306 307 0.107945 GCCGAGAAGTTCAGCCATCT 60.108 55.000 5.50 0.00 0.00 2.90
307 308 1.424493 CGCCGAGAAGTTCAGCCATC 61.424 60.000 5.50 0.00 0.00 3.51
308 309 1.448540 CGCCGAGAAGTTCAGCCAT 60.449 57.895 5.50 0.00 0.00 4.40
309 310 2.048222 CGCCGAGAAGTTCAGCCA 60.048 61.111 5.50 0.00 0.00 4.75
310 311 3.491652 GCGCCGAGAAGTTCAGCC 61.492 66.667 5.50 0.00 0.00 4.85
311 312 2.433318 AGCGCCGAGAAGTTCAGC 60.433 61.111 2.29 4.18 0.00 4.26
312 313 1.807573 GGAGCGCCGAGAAGTTCAG 60.808 63.158 2.29 0.00 0.00 3.02
313 314 2.261671 GGAGCGCCGAGAAGTTCA 59.738 61.111 2.29 0.00 0.00 3.18
314 315 1.807573 CTGGAGCGCCGAGAAGTTC 60.808 63.158 2.29 0.00 36.79 3.01
315 316 2.262915 CTGGAGCGCCGAGAAGTT 59.737 61.111 2.29 0.00 36.79 2.66
316 317 4.443266 GCTGGAGCGCCGAGAAGT 62.443 66.667 2.29 0.00 36.79 3.01
326 327 3.329542 TTCACCGATGGGCTGGAGC 62.330 63.158 0.00 0.00 41.14 4.70
327 328 1.450312 GTTCACCGATGGGCTGGAG 60.450 63.158 0.00 0.00 36.48 3.86
328 329 2.668632 GTTCACCGATGGGCTGGA 59.331 61.111 0.00 0.00 36.48 3.86
329 330 2.819595 CGTTCACCGATGGGCTGG 60.820 66.667 0.00 0.00 39.56 4.85
330 331 2.264480 TCGTTCACCGATGGGCTG 59.736 61.111 0.00 0.00 41.60 4.85
337 338 4.688419 GGCGTCGTCGTTCACCGA 62.688 66.667 3.66 0.00 45.00 4.69
339 340 4.688419 TCGGCGTCGTCGTTCACC 62.688 66.667 19.81 0.00 39.49 4.02
340 341 3.164011 CTCGGCGTCGTCGTTCAC 61.164 66.667 19.81 0.00 39.49 3.18
341 342 4.394078 CCTCGGCGTCGTCGTTCA 62.394 66.667 19.81 0.00 39.49 3.18
369 370 4.299547 TTCGTGCTGCCGTCTGCT 62.300 61.111 9.66 0.00 42.00 4.24
370 371 4.077188 GTTCGTGCTGCCGTCTGC 62.077 66.667 9.66 0.00 41.77 4.26
371 372 3.767230 CGTTCGTGCTGCCGTCTG 61.767 66.667 9.66 0.00 0.00 3.51
378 379 3.414700 GAGGTGGCGTTCGTGCTG 61.415 66.667 0.00 0.00 34.52 4.41
381 382 4.657824 ACCGAGGTGGCGTTCGTG 62.658 66.667 0.00 0.33 43.94 4.35
382 383 4.353437 GACCGAGGTGGCGTTCGT 62.353 66.667 0.00 0.00 43.94 3.85
389 390 1.065928 GTGATAGCGACCGAGGTGG 59.934 63.158 0.00 0.00 46.41 4.61
390 391 1.065928 GGTGATAGCGACCGAGGTG 59.934 63.158 0.00 0.00 0.00 4.00
391 392 0.755698 ATGGTGATAGCGACCGAGGT 60.756 55.000 0.00 0.00 36.12 3.85
392 393 0.389391 AATGGTGATAGCGACCGAGG 59.611 55.000 0.00 0.00 36.12 4.63
393 394 1.860950 CAAATGGTGATAGCGACCGAG 59.139 52.381 0.00 0.00 36.12 4.63
394 395 1.472552 CCAAATGGTGATAGCGACCGA 60.473 52.381 0.00 0.00 36.12 4.69
395 396 0.937304 CCAAATGGTGATAGCGACCG 59.063 55.000 0.00 0.00 36.12 4.79
396 397 0.663153 GCCAAATGGTGATAGCGACC 59.337 55.000 0.71 0.00 37.57 4.79
397 398 0.663153 GGCCAAATGGTGATAGCGAC 59.337 55.000 0.00 0.00 37.57 5.19
398 399 0.546122 AGGCCAAATGGTGATAGCGA 59.454 50.000 5.01 0.00 37.57 4.93
399 400 0.947244 GAGGCCAAATGGTGATAGCG 59.053 55.000 5.01 0.00 37.57 4.26
400 401 1.322442 GGAGGCCAAATGGTGATAGC 58.678 55.000 5.01 0.00 37.57 2.97
401 402 2.734755 TGGAGGCCAAATGGTGATAG 57.265 50.000 5.01 0.00 37.57 2.08
402 403 2.424667 CCATGGAGGCCAAATGGTGATA 60.425 50.000 18.61 0.00 36.95 2.15
403 404 1.690209 CCATGGAGGCCAAATGGTGAT 60.690 52.381 18.61 0.00 36.95 3.06
404 405 0.324552 CCATGGAGGCCAAATGGTGA 60.325 55.000 18.61 0.00 36.95 4.02
405 406 0.615544 ACCATGGAGGCCAAATGGTG 60.616 55.000 27.18 10.12 43.03 4.17
406 407 0.615544 CACCATGGAGGCCAAATGGT 60.616 55.000 24.06 24.06 44.82 3.55
407 408 1.332144 CCACCATGGAGGCCAAATGG 61.332 60.000 21.47 22.99 40.96 3.16
408 409 0.615544 ACCACCATGGAGGCCAAATG 60.616 55.000 26.47 7.88 40.96 2.32
409 410 0.116940 AACCACCATGGAGGCCAAAT 59.883 50.000 26.47 5.29 40.96 2.32
410 411 0.831288 CAACCACCATGGAGGCCAAA 60.831 55.000 26.47 0.00 40.96 3.28
411 412 1.228831 CAACCACCATGGAGGCCAA 60.229 57.895 26.47 0.00 40.96 4.52
412 413 2.440147 CAACCACCATGGAGGCCA 59.560 61.111 26.47 0.00 40.96 5.36
413 414 1.978617 CACAACCACCATGGAGGCC 60.979 63.158 26.47 0.00 40.96 5.19
414 415 1.978617 CCACAACCACCATGGAGGC 60.979 63.158 26.47 0.00 40.96 4.70
415 416 1.978617 GCCACAACCACCATGGAGG 60.979 63.158 25.14 25.14 40.96 4.30
416 417 2.334946 CGCCACAACCACCATGGAG 61.335 63.158 21.47 11.19 40.96 3.86
417 418 2.282110 CGCCACAACCACCATGGA 60.282 61.111 21.47 0.00 40.96 3.41
418 419 4.054825 GCGCCACAACCACCATGG 62.055 66.667 11.19 11.19 45.02 3.66
419 420 3.271706 CTGCGCCACAACCACCATG 62.272 63.158 4.18 0.00 0.00 3.66
420 421 2.404566 TACTGCGCCACAACCACCAT 62.405 55.000 4.18 0.00 0.00 3.55
421 422 3.108288 TACTGCGCCACAACCACCA 62.108 57.895 4.18 0.00 0.00 4.17
422 423 2.281208 TACTGCGCCACAACCACC 60.281 61.111 4.18 0.00 0.00 4.61
423 424 2.613506 GGTACTGCGCCACAACCAC 61.614 63.158 4.18 0.00 0.00 4.16
424 425 2.281208 GGTACTGCGCCACAACCA 60.281 61.111 4.18 0.00 0.00 3.67
425 426 3.053896 GGGTACTGCGCCACAACC 61.054 66.667 4.18 7.38 0.00 3.77
426 427 2.281208 TGGGTACTGCGCCACAAC 60.281 61.111 4.18 0.00 0.00 3.32
427 428 2.031919 CTGGGTACTGCGCCACAA 59.968 61.111 4.18 0.00 0.00 3.33
428 429 4.697756 GCTGGGTACTGCGCCACA 62.698 66.667 4.18 0.00 0.00 4.17
437 438 4.137872 TACGCCTGCGCTGGGTAC 62.138 66.667 31.28 15.93 44.19 3.34
438 439 4.137872 GTACGCCTGCGCTGGGTA 62.138 66.667 31.28 25.94 44.19 3.69
440 441 4.838152 ATGTACGCCTGCGCTGGG 62.838 66.667 31.28 23.25 44.19 4.45
441 442 3.264897 GATGTACGCCTGCGCTGG 61.265 66.667 27.42 27.42 44.19 4.85
442 443 1.811266 AAGATGTACGCCTGCGCTG 60.811 57.895 9.73 8.47 44.19 5.18
443 444 1.811266 CAAGATGTACGCCTGCGCT 60.811 57.895 9.73 1.78 44.19 5.92
444 445 2.703409 CAAGATGTACGCCTGCGC 59.297 61.111 12.03 0.00 44.19 6.09
445 446 2.813179 GCCAAGATGTACGCCTGCG 61.813 63.158 10.40 10.40 46.03 5.18
446 447 1.709147 CTGCCAAGATGTACGCCTGC 61.709 60.000 0.00 0.00 0.00 4.85
447 448 1.709147 GCTGCCAAGATGTACGCCTG 61.709 60.000 0.00 0.00 0.00 4.85
448 449 1.450312 GCTGCCAAGATGTACGCCT 60.450 57.895 0.00 0.00 0.00 5.52
449 450 1.745115 TGCTGCCAAGATGTACGCC 60.745 57.895 0.00 0.00 0.00 5.68
450 451 1.021390 AGTGCTGCCAAGATGTACGC 61.021 55.000 0.00 0.00 0.00 4.42
451 452 2.196749 CTAGTGCTGCCAAGATGTACG 58.803 52.381 0.00 0.00 0.00 3.67
452 453 1.936547 GCTAGTGCTGCCAAGATGTAC 59.063 52.381 0.00 0.00 36.03 2.90
453 454 2.315925 GCTAGTGCTGCCAAGATGTA 57.684 50.000 0.00 0.00 36.03 2.29
454 455 3.165606 GCTAGTGCTGCCAAGATGT 57.834 52.632 0.00 0.00 36.03 3.06
461 462 4.436998 ACGTCGGCTAGTGCTGCC 62.437 66.667 0.00 0.00 44.83 4.85
462 463 2.881352 GACGTCGGCTAGTGCTGC 60.881 66.667 0.00 0.00 44.83 5.25
463 464 2.202623 GGACGTCGGCTAGTGCTG 60.203 66.667 9.92 0.00 46.48 4.41
464 465 3.450115 GGGACGTCGGCTAGTGCT 61.450 66.667 9.92 0.00 39.59 4.40
566 567 1.032014 GCCGTGCCATGGATTTGTAT 58.968 50.000 18.40 0.00 0.00 2.29
587 588 0.753867 TTCAGTGGCACCGTCAACTA 59.246 50.000 15.27 0.00 0.00 2.24
593 594 1.227556 GTGAGTTCAGTGGCACCGT 60.228 57.895 15.27 0.00 0.00 4.83
655 661 6.634805 TGTGCCATTTAAAACTGAACTTCAA 58.365 32.000 0.00 0.00 0.00 2.69
665 671 2.432206 ACCGCTGTGCCATTTAAAAC 57.568 45.000 0.00 0.00 0.00 2.43
679 685 2.154462 CATGGTTTCTTCAGAACCGCT 58.846 47.619 2.02 0.00 33.13 5.52
717 724 7.624360 ACTTCTTTGACGGAATATATTGCAA 57.376 32.000 16.12 0.00 0.00 4.08
779 786 1.991121 TCTACGGTGACACCAAGAGT 58.009 50.000 24.18 15.44 38.47 3.24
801 808 7.065803 TCAGCAACTAAGCCAAATAGTAATGAC 59.934 37.037 0.00 0.00 33.36 3.06
805 812 6.940298 AGTTCAGCAACTAAGCCAAATAGTAA 59.060 34.615 0.00 0.00 41.39 2.24
887 916 3.373439 GGTCGAGAACTAGCTCTTCGTTA 59.627 47.826 0.00 0.00 32.71 3.18
968 1003 1.746615 GCTGGGAAGATTGAGCGCA 60.747 57.895 11.47 0.00 0.00 6.09
969 1004 2.476320 GGCTGGGAAGATTGAGCGC 61.476 63.158 0.00 0.00 31.89 5.92
972 1007 0.539051 ACTCGGCTGGGAAGATTGAG 59.461 55.000 0.00 0.00 0.00 3.02
973 1008 0.250234 CACTCGGCTGGGAAGATTGA 59.750 55.000 0.00 0.00 0.00 2.57
1025 1060 3.773630 CGAACGCCGCGAACATGT 61.774 61.111 21.79 0.00 0.00 3.21
1027 1062 3.475774 GTCGAACGCCGCGAACAT 61.476 61.111 21.79 2.10 39.73 2.71
1167 1410 2.525629 TCCTCGTCCAGCAACCCA 60.526 61.111 0.00 0.00 0.00 4.51
1241 1484 0.742990 CCCGAACGCCTCTTTGCATA 60.743 55.000 0.00 0.00 0.00 3.14
1347 1590 1.225426 GATGATGGCCTGGCACTCA 59.775 57.895 22.05 21.00 0.00 3.41
1362 1613 4.143333 AGGTCGAACCGGCGGATG 62.143 66.667 35.78 20.93 44.90 3.51
1461 1822 6.371548 TCGAATTAGAATCAACCAGACAAAGG 59.628 38.462 0.00 0.00 0.00 3.11
1597 1967 7.632721 AGCATTGTCATTTGTTCATGTTTTTC 58.367 30.769 0.00 0.00 0.00 2.29
1603 1973 4.390603 CCCAAGCATTGTCATTTGTTCATG 59.609 41.667 0.00 0.00 46.99 3.07
1859 2279 2.496470 AGGTTAGAACGGTGGATGAGTC 59.504 50.000 0.00 0.00 0.00 3.36
2151 2571 1.071542 TCGACTTGGGCTGTGATTTGA 59.928 47.619 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.