Multiple sequence alignment - TraesCS3B01G338300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G338300 chr3B 100.000 3495 0 0 1 3495 544827009 544830503 0.000000e+00 6455.0
1 TraesCS3B01G338300 chr3B 94.237 2898 116 31 624 3474 31137447 31140340 0.000000e+00 4379.0
2 TraesCS3B01G338300 chr3B 96.989 631 11 4 1 631 544926964 544927586 0.000000e+00 1053.0
3 TraesCS3B01G338300 chr3B 95.238 42 1 1 465 506 351291393 351291433 8.100000e-07 65.8
4 TraesCS3B01G338300 chr4B 97.588 1700 38 3 1362 3059 634465688 634467386 0.000000e+00 2909.0
5 TraesCS3B01G338300 chr4B 96.019 1683 35 18 1362 3042 634962891 634961239 0.000000e+00 2708.0
6 TraesCS3B01G338300 chr4B 95.618 1643 53 2 628 2252 610532037 610533678 0.000000e+00 2617.0
7 TraesCS3B01G338300 chr4B 97.128 766 21 1 629 1393 634464853 634465618 0.000000e+00 1291.0
8 TraesCS3B01G338300 chr4B 96.867 766 24 0 628 1393 634963725 634962960 0.000000e+00 1282.0
9 TraesCS3B01G338300 chr4B 93.083 665 43 3 2833 3495 634467738 634468401 0.000000e+00 970.0
10 TraesCS3B01G338300 chr4B 93.584 639 31 3 2859 3495 634960912 634960282 0.000000e+00 944.0
11 TraesCS3B01G338300 chr2B 95.461 1454 62 3 1649 3101 760246412 760244962 0.000000e+00 2316.0
12 TraesCS3B01G338300 chr2B 95.093 1019 48 2 628 1644 760247471 760246453 0.000000e+00 1604.0
13 TraesCS3B01G338300 chr2B 93.478 598 22 3 2912 3493 760244623 760244027 0.000000e+00 872.0
14 TraesCS3B01G338300 chr2B 95.376 173 7 1 2960 3131 760244623 760244451 1.240000e-69 274.0
15 TraesCS3B01G338300 chr1D 92.772 1425 77 10 1708 3131 386435771 386437170 0.000000e+00 2037.0
16 TraesCS3B01G338300 chr1D 93.058 1354 67 10 1708 3060 491850091 491848764 0.000000e+00 1954.0
17 TraesCS3B01G338300 chr1D 95.070 1136 50 5 1649 2783 416512932 416514062 0.000000e+00 1783.0
18 TraesCS3B01G338300 chr1D 93.386 1013 63 3 628 1639 491851252 491850243 0.000000e+00 1496.0
19 TraesCS3B01G338300 chr1D 89.967 299 27 3 2829 3125 386436915 386437212 1.970000e-102 383.0
20 TraesCS3B01G338300 chr1D 100.000 41 0 0 3455 3495 416519354 416519394 3.740000e-10 76.8
21 TraesCS3B01G338300 chr5D 95.511 1136 45 5 1649 2783 292686685 292687815 0.000000e+00 1810.0
22 TraesCS3B01G338300 chr5D 84.492 561 61 17 2957 3495 292688817 292689373 6.640000e-147 531.0
23 TraesCS3B01G338300 chrUn 95.335 1136 46 6 1649 2783 10230138 10229009 0.000000e+00 1797.0
24 TraesCS3B01G338300 chrUn 90.179 336 13 3 3127 3449 10214823 10214495 1.500000e-113 420.0
25 TraesCS3B01G338300 chrUn 100.000 41 0 0 3455 3495 10214435 10214395 3.740000e-10 76.8
26 TraesCS3B01G338300 chr6B 95.678 1018 39 3 628 1644 468286352 468285339 0.000000e+00 1631.0
27 TraesCS3B01G338300 chr6B 93.767 369 11 3 3127 3495 468282650 468282294 8.530000e-151 544.0
28 TraesCS3B01G338300 chr4A 94.897 1019 38 5 627 1644 722383684 722382679 0.000000e+00 1581.0
29 TraesCS3B01G338300 chr5B 87.430 1074 121 10 624 1696 186149884 186150944 0.000000e+00 1223.0
30 TraesCS3B01G338300 chr3D 93.699 492 23 5 141 631 418442565 418443049 0.000000e+00 730.0
31 TraesCS3B01G338300 chr3D 92.809 445 27 2 23 463 418559896 418560339 1.060000e-179 640.0
32 TraesCS3B01G338300 chr3D 94.167 120 6 1 512 631 418560346 418560464 7.710000e-42 182.0
33 TraesCS3B01G338300 chr2D 83.845 619 69 12 2861 3449 81286203 81286820 8.470000e-156 560.0
34 TraesCS3B01G338300 chr2D 97.806 319 7 0 3177 3495 622905470 622905788 5.100000e-153 551.0
35 TraesCS3B01G338300 chr2D 96.000 300 12 0 628 927 622905169 622905468 4.050000e-134 488.0
36 TraesCS3B01G338300 chr6A 81.887 657 93 17 2861 3495 592859729 592860381 6.640000e-147 531.0
37 TraesCS3B01G338300 chr6A 91.205 307 14 5 3156 3449 561581910 561581604 4.200000e-109 405.0
38 TraesCS3B01G338300 chr6A 91.205 307 14 5 3156 3449 561595077 561594771 4.200000e-109 405.0
39 TraesCS3B01G338300 chr7A 91.531 307 13 3 3156 3449 488482432 488482126 9.030000e-111 411.0
40 TraesCS3B01G338300 chr1A 90.879 307 15 5 3156 3449 565641091 565640785 1.950000e-107 399.0
41 TraesCS3B01G338300 chr3A 95.536 224 10 0 23 246 532629977 532629754 3.320000e-95 359.0
42 TraesCS3B01G338300 chr3A 91.518 224 15 1 244 463 532629407 532629184 4.380000e-79 305.0
43 TraesCS3B01G338300 chr3A 95.833 120 4 1 512 631 532629178 532629060 3.560000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G338300 chr3B 544827009 544830503 3494 False 6455.000000 6455 100.000000 1 3495 1 chr3B.!!$F3 3494
1 TraesCS3B01G338300 chr3B 31137447 31140340 2893 False 4379.000000 4379 94.237000 624 3474 1 chr3B.!!$F1 2850
2 TraesCS3B01G338300 chr3B 544926964 544927586 622 False 1053.000000 1053 96.989000 1 631 1 chr3B.!!$F4 630
3 TraesCS3B01G338300 chr4B 610532037 610533678 1641 False 2617.000000 2617 95.618000 628 2252 1 chr4B.!!$F1 1624
4 TraesCS3B01G338300 chr4B 634464853 634468401 3548 False 1723.333333 2909 95.933000 629 3495 3 chr4B.!!$F2 2866
5 TraesCS3B01G338300 chr4B 634960282 634963725 3443 True 1644.666667 2708 95.490000 628 3495 3 chr4B.!!$R1 2867
6 TraesCS3B01G338300 chr2B 760244027 760247471 3444 True 1266.500000 2316 94.852000 628 3493 4 chr2B.!!$R1 2865
7 TraesCS3B01G338300 chr1D 416512932 416514062 1130 False 1783.000000 1783 95.070000 1649 2783 1 chr1D.!!$F1 1134
8 TraesCS3B01G338300 chr1D 491848764 491851252 2488 True 1725.000000 1954 93.222000 628 3060 2 chr1D.!!$R1 2432
9 TraesCS3B01G338300 chr1D 386435771 386437212 1441 False 1210.000000 2037 91.369500 1708 3131 2 chr1D.!!$F3 1423
10 TraesCS3B01G338300 chr5D 292686685 292689373 2688 False 1170.500000 1810 90.001500 1649 3495 2 chr5D.!!$F1 1846
11 TraesCS3B01G338300 chrUn 10229009 10230138 1129 True 1797.000000 1797 95.335000 1649 2783 1 chrUn.!!$R1 1134
12 TraesCS3B01G338300 chr6B 468282294 468286352 4058 True 1087.500000 1631 94.722500 628 3495 2 chr6B.!!$R1 2867
13 TraesCS3B01G338300 chr4A 722382679 722383684 1005 True 1581.000000 1581 94.897000 627 1644 1 chr4A.!!$R1 1017
14 TraesCS3B01G338300 chr5B 186149884 186150944 1060 False 1223.000000 1223 87.430000 624 1696 1 chr5B.!!$F1 1072
15 TraesCS3B01G338300 chr3D 418559896 418560464 568 False 411.000000 640 93.488000 23 631 2 chr3D.!!$F2 608
16 TraesCS3B01G338300 chr2D 81286203 81286820 617 False 560.000000 560 83.845000 2861 3449 1 chr2D.!!$F1 588
17 TraesCS3B01G338300 chr2D 622905169 622905788 619 False 519.500000 551 96.903000 628 3495 2 chr2D.!!$F2 2867
18 TraesCS3B01G338300 chr6A 592859729 592860381 652 False 531.000000 531 81.887000 2861 3495 1 chr6A.!!$F1 634
19 TraesCS3B01G338300 chr3A 532629060 532629977 917 True 285.666667 359 94.295667 23 631 3 chr3A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 370 0.026803 GCAACTTTCCGCTAGCGATG 59.973 55.0 37.39 21.93 42.83 3.84 F
563 564 0.039256 CACAGTTTTGGCCGTCATGG 60.039 55.0 0.00 0.00 42.50 3.66 F
566 567 0.178975 AGTTTTGGCCGTCATGGGAA 60.179 50.0 0.00 0.00 38.63 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2629 2.488347 GCCTTCAAGTTCCCCACTACAA 60.488 50.000 0.0 0.0 32.94 2.41 R
2477 2912 3.898123 GCACCCTACTCATCTAAGATGGA 59.102 47.826 0.0 0.0 0.00 3.41 R
2759 3195 4.386867 TCTACTAAGCACATACACCAGC 57.613 45.455 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 7.483307 TGGCAATTAGCTGATAATTCAAGAAC 58.517 34.615 7.87 0.00 41.25 3.01
252 253 4.738243 GCATGCCATGACATCTAATTTGCA 60.738 41.667 9.33 0.00 0.00 4.08
253 254 4.374843 TGCCATGACATCTAATTTGCAC 57.625 40.909 0.00 0.00 0.00 4.57
254 255 3.762823 TGCCATGACATCTAATTTGCACA 59.237 39.130 0.00 0.00 0.00 4.57
255 256 4.403113 TGCCATGACATCTAATTTGCACAT 59.597 37.500 0.00 0.00 0.00 3.21
256 257 5.105269 TGCCATGACATCTAATTTGCACATT 60.105 36.000 3.19 3.19 0.00 2.71
257 258 5.813672 GCCATGACATCTAATTTGCACATTT 59.186 36.000 2.94 0.00 0.00 2.32
258 259 6.314400 GCCATGACATCTAATTTGCACATTTT 59.686 34.615 2.94 0.00 0.00 1.82
259 260 7.148373 GCCATGACATCTAATTTGCACATTTTT 60.148 33.333 2.94 0.00 0.00 1.94
281 282 8.592105 TTTTTCTGTTTCTGCATTGGATAAAG 57.408 30.769 0.00 0.00 0.00 1.85
282 283 7.523293 TTTCTGTTTCTGCATTGGATAAAGA 57.477 32.000 0.00 0.00 0.00 2.52
283 284 7.523293 TTCTGTTTCTGCATTGGATAAAGAA 57.477 32.000 0.00 0.00 0.00 2.52
284 285 7.523293 TCTGTTTCTGCATTGGATAAAGAAA 57.477 32.000 0.00 0.00 35.17 2.52
285 286 7.596494 TCTGTTTCTGCATTGGATAAAGAAAG 58.404 34.615 0.00 0.00 37.49 2.62
286 287 7.231317 TCTGTTTCTGCATTGGATAAAGAAAGT 59.769 33.333 0.00 0.00 37.49 2.66
287 288 7.370383 TGTTTCTGCATTGGATAAAGAAAGTC 58.630 34.615 0.00 0.00 37.49 3.01
288 289 7.014134 TGTTTCTGCATTGGATAAAGAAAGTCA 59.986 33.333 0.00 0.00 37.49 3.41
289 290 6.748333 TCTGCATTGGATAAAGAAAGTCAG 57.252 37.500 0.00 0.00 0.00 3.51
290 291 6.240894 TCTGCATTGGATAAAGAAAGTCAGT 58.759 36.000 0.00 0.00 0.00 3.41
291 292 6.372659 TCTGCATTGGATAAAGAAAGTCAGTC 59.627 38.462 0.00 0.00 0.00 3.51
292 293 6.240894 TGCATTGGATAAAGAAAGTCAGTCT 58.759 36.000 0.00 0.00 0.00 3.24
293 294 6.716628 TGCATTGGATAAAGAAAGTCAGTCTT 59.283 34.615 0.00 0.00 36.90 3.01
294 295 7.882791 TGCATTGGATAAAGAAAGTCAGTCTTA 59.117 33.333 0.00 0.00 34.19 2.10
295 296 8.897752 GCATTGGATAAAGAAAGTCAGTCTTAT 58.102 33.333 0.00 0.00 34.19 1.73
298 299 9.877178 TTGGATAAAGAAAGTCAGTCTTATCTC 57.123 33.333 0.00 0.00 34.19 2.75
299 300 9.261035 TGGATAAAGAAAGTCAGTCTTATCTCT 57.739 33.333 0.00 0.00 34.19 3.10
306 307 9.474313 AGAAAGTCAGTCTTATCTCTATTGACT 57.526 33.333 0.00 0.00 43.89 3.41
313 314 8.995027 AGTCTTATCTCTATTGACTGATGACT 57.005 34.615 0.00 0.00 36.74 3.41
314 315 9.420118 AGTCTTATCTCTATTGACTGATGACTT 57.580 33.333 0.00 0.00 36.74 3.01
315 316 9.462174 GTCTTATCTCTATTGACTGATGACTTG 57.538 37.037 0.00 0.00 0.00 3.16
316 317 8.637099 TCTTATCTCTATTGACTGATGACTTGG 58.363 37.037 0.00 0.00 0.00 3.61
317 318 8.539117 TTATCTCTATTGACTGATGACTTGGA 57.461 34.615 0.00 0.00 0.00 3.53
318 319 6.214191 TCTCTATTGACTGATGACTTGGAC 57.786 41.667 0.00 0.00 0.00 4.02
319 320 5.954752 TCTCTATTGACTGATGACTTGGACT 59.045 40.000 0.00 0.00 0.00 3.85
320 321 7.119387 TCTCTATTGACTGATGACTTGGACTA 58.881 38.462 0.00 0.00 0.00 2.59
321 322 7.615757 TCTCTATTGACTGATGACTTGGACTAA 59.384 37.037 0.00 0.00 0.00 2.24
322 323 7.548097 TCTATTGACTGATGACTTGGACTAAC 58.452 38.462 0.00 0.00 0.00 2.34
323 324 5.808366 TTGACTGATGACTTGGACTAACT 57.192 39.130 0.00 0.00 0.00 2.24
324 325 6.911250 TTGACTGATGACTTGGACTAACTA 57.089 37.500 0.00 0.00 0.00 2.24
325 326 6.516739 TGACTGATGACTTGGACTAACTAG 57.483 41.667 0.00 0.00 0.00 2.57
326 327 6.010850 TGACTGATGACTTGGACTAACTAGT 58.989 40.000 0.00 0.00 39.71 2.57
341 342 7.228314 ACTAACTAGTCACTAATTGCACTGA 57.772 36.000 0.00 0.00 0.00 3.41
342 343 7.091443 ACTAACTAGTCACTAATTGCACTGAC 58.909 38.462 0.00 0.00 34.42 3.51
343 344 5.468540 ACTAGTCACTAATTGCACTGACA 57.531 39.130 0.00 0.00 36.31 3.58
344 345 5.473931 ACTAGTCACTAATTGCACTGACAG 58.526 41.667 0.00 0.00 36.31 3.51
345 346 4.342862 AGTCACTAATTGCACTGACAGT 57.657 40.909 1.07 1.07 36.31 3.55
346 347 4.310769 AGTCACTAATTGCACTGACAGTC 58.689 43.478 4.74 1.74 36.31 3.51
347 348 3.121944 GTCACTAATTGCACTGACAGTCG 59.878 47.826 4.74 3.01 34.38 4.18
348 349 2.413112 CACTAATTGCACTGACAGTCGG 59.587 50.000 4.74 7.94 0.00 4.79
349 350 2.037251 ACTAATTGCACTGACAGTCGGT 59.963 45.455 9.45 9.45 36.16 4.69
353 354 4.436515 CACTGACAGTCGGTGCAA 57.563 55.556 26.22 0.00 45.52 4.08
354 355 1.934463 CACTGACAGTCGGTGCAAC 59.066 57.895 26.22 0.00 45.52 4.17
355 356 0.530650 CACTGACAGTCGGTGCAACT 60.531 55.000 26.22 0.00 45.52 3.16
356 357 0.178068 ACTGACAGTCGGTGCAACTT 59.822 50.000 14.67 0.00 34.08 2.66
357 358 1.299541 CTGACAGTCGGTGCAACTTT 58.700 50.000 0.00 0.00 36.74 2.66
358 359 1.261619 CTGACAGTCGGTGCAACTTTC 59.738 52.381 0.00 0.00 36.74 2.62
359 360 0.586802 GACAGTCGGTGCAACTTTCC 59.413 55.000 0.00 0.00 36.74 3.13
360 361 1.157870 ACAGTCGGTGCAACTTTCCG 61.158 55.000 6.36 6.36 44.76 4.30
361 362 2.251371 GTCGGTGCAACTTTCCGC 59.749 61.111 7.77 0.50 43.35 5.54
362 363 2.110213 TCGGTGCAACTTTCCGCT 59.890 55.556 7.77 0.00 43.35 5.52
363 364 0.947180 GTCGGTGCAACTTTCCGCTA 60.947 55.000 7.77 0.00 43.35 4.26
364 365 0.669318 TCGGTGCAACTTTCCGCTAG 60.669 55.000 7.77 0.00 43.35 3.42
365 366 1.502190 GGTGCAACTTTCCGCTAGC 59.498 57.895 4.06 4.06 36.74 3.42
366 367 1.132640 GTGCAACTTTCCGCTAGCG 59.867 57.895 29.93 29.93 39.44 4.26
367 368 1.005512 TGCAACTTTCCGCTAGCGA 60.006 52.632 37.39 20.61 42.83 4.93
368 369 0.391130 TGCAACTTTCCGCTAGCGAT 60.391 50.000 37.39 14.57 42.83 4.58
369 370 0.026803 GCAACTTTCCGCTAGCGATG 59.973 55.000 37.39 21.93 42.83 3.84
370 371 1.359848 CAACTTTCCGCTAGCGATGT 58.640 50.000 37.39 24.29 42.83 3.06
371 372 1.324736 CAACTTTCCGCTAGCGATGTC 59.675 52.381 37.39 0.00 42.83 3.06
372 373 0.530744 ACTTTCCGCTAGCGATGTCA 59.469 50.000 37.39 15.28 42.83 3.58
373 374 1.067142 ACTTTCCGCTAGCGATGTCAA 60.067 47.619 37.39 19.43 42.83 3.18
374 375 1.999735 CTTTCCGCTAGCGATGTCAAA 59.000 47.619 37.39 22.88 42.83 2.69
375 376 2.309528 TTCCGCTAGCGATGTCAAAT 57.690 45.000 37.39 0.00 42.83 2.32
376 377 1.852942 TCCGCTAGCGATGTCAAATC 58.147 50.000 37.39 0.00 42.83 2.17
377 378 0.861837 CCGCTAGCGATGTCAAATCC 59.138 55.000 37.39 0.00 42.83 3.01
378 379 1.570813 CGCTAGCGATGTCAAATCCA 58.429 50.000 32.98 0.00 42.83 3.41
379 380 1.933181 CGCTAGCGATGTCAAATCCAA 59.067 47.619 32.98 0.00 42.83 3.53
380 381 2.033407 CGCTAGCGATGTCAAATCCAAG 60.033 50.000 32.98 0.00 42.83 3.61
381 382 3.198068 GCTAGCGATGTCAAATCCAAGA 58.802 45.455 0.00 0.00 0.00 3.02
382 383 3.623060 GCTAGCGATGTCAAATCCAAGAA 59.377 43.478 0.00 0.00 0.00 2.52
383 384 4.494855 GCTAGCGATGTCAAATCCAAGAAC 60.495 45.833 0.00 0.00 0.00 3.01
384 385 3.679389 AGCGATGTCAAATCCAAGAACT 58.321 40.909 0.00 0.00 0.00 3.01
385 386 4.074970 AGCGATGTCAAATCCAAGAACTT 58.925 39.130 0.00 0.00 0.00 2.66
386 387 4.083110 AGCGATGTCAAATCCAAGAACTTG 60.083 41.667 7.49 7.49 40.13 3.16
399 400 5.997732 CAAGAACTTGGCAATTACGAATG 57.002 39.130 0.00 0.00 36.95 2.67
400 401 5.460646 CAAGAACTTGGCAATTACGAATGT 58.539 37.500 0.00 0.00 36.95 2.71
401 402 5.296813 AGAACTTGGCAATTACGAATGTC 57.703 39.130 0.00 0.00 0.00 3.06
402 403 4.759693 AGAACTTGGCAATTACGAATGTCA 59.240 37.500 0.00 0.00 0.00 3.58
403 404 4.419522 ACTTGGCAATTACGAATGTCAC 57.580 40.909 0.00 0.00 29.48 3.67
404 405 3.818210 ACTTGGCAATTACGAATGTCACA 59.182 39.130 0.00 0.00 29.48 3.58
405 406 3.822594 TGGCAATTACGAATGTCACAC 57.177 42.857 0.00 0.00 0.00 3.82
406 407 3.142174 TGGCAATTACGAATGTCACACA 58.858 40.909 0.00 0.00 0.00 3.72
407 408 3.058570 TGGCAATTACGAATGTCACACAC 60.059 43.478 0.00 0.00 0.00 3.82
408 409 3.058570 GGCAATTACGAATGTCACACACA 60.059 43.478 0.00 0.00 40.18 3.72
409 410 4.532276 GCAATTACGAATGTCACACACAA 58.468 39.130 0.00 0.00 38.97 3.33
410 411 5.153513 GCAATTACGAATGTCACACACAAT 58.846 37.500 0.00 0.00 38.97 2.71
411 412 5.059587 GCAATTACGAATGTCACACACAATG 59.940 40.000 0.00 0.00 38.97 2.82
412 413 5.940192 ATTACGAATGTCACACACAATGT 57.060 34.783 0.00 0.00 44.81 2.71
413 414 5.743026 TTACGAATGTCACACACAATGTT 57.257 34.783 0.00 0.00 40.64 2.71
414 415 4.630894 ACGAATGTCACACACAATGTTT 57.369 36.364 0.00 0.00 40.64 2.83
415 416 4.992688 ACGAATGTCACACACAATGTTTT 58.007 34.783 0.00 0.00 40.64 2.43
416 417 5.034152 ACGAATGTCACACACAATGTTTTC 58.966 37.500 0.00 0.00 40.64 2.29
417 418 5.163663 ACGAATGTCACACACAATGTTTTCT 60.164 36.000 0.00 0.00 40.64 2.52
418 419 5.396362 CGAATGTCACACACAATGTTTTCTC 59.604 40.000 0.00 0.00 40.64 2.87
419 420 5.833406 ATGTCACACACAATGTTTTCTCA 57.167 34.783 0.00 0.00 40.64 3.27
420 421 5.635417 TGTCACACACAATGTTTTCTCAA 57.365 34.783 0.00 0.00 40.64 3.02
421 422 6.018589 TGTCACACACAATGTTTTCTCAAA 57.981 33.333 0.00 0.00 40.64 2.69
422 423 6.092092 TGTCACACACAATGTTTTCTCAAAG 58.908 36.000 0.00 0.00 40.64 2.77
423 424 6.092748 GTCACACACAATGTTTTCTCAAAGT 58.907 36.000 0.00 0.00 40.64 2.66
424 425 6.586082 GTCACACACAATGTTTTCTCAAAGTT 59.414 34.615 0.00 0.00 40.64 2.66
425 426 7.753132 GTCACACACAATGTTTTCTCAAAGTTA 59.247 33.333 0.00 0.00 40.64 2.24
426 427 8.300286 TCACACACAATGTTTTCTCAAAGTTAA 58.700 29.630 0.00 0.00 40.64 2.01
427 428 9.086336 CACACACAATGTTTTCTCAAAGTTAAT 57.914 29.630 0.00 0.00 40.64 1.40
428 429 9.651913 ACACACAATGTTTTCTCAAAGTTAATT 57.348 25.926 0.00 0.00 38.98 1.40
445 446 6.246163 AGTTAATTTAACTCTGGGTTCAGGG 58.754 40.000 14.66 0.00 45.38 4.45
446 447 6.045106 AGTTAATTTAACTCTGGGTTCAGGGA 59.955 38.462 14.66 0.00 45.38 4.20
447 448 5.333566 AATTTAACTCTGGGTTCAGGGAA 57.666 39.130 0.00 0.00 44.15 3.97
448 449 4.367039 TTTAACTCTGGGTTCAGGGAAG 57.633 45.455 0.00 0.00 44.15 3.46
449 450 2.118403 AACTCTGGGTTCAGGGAAGA 57.882 50.000 0.00 0.00 44.15 2.87
450 451 2.118403 ACTCTGGGTTCAGGGAAGAA 57.882 50.000 0.00 0.00 44.15 2.52
451 452 2.418669 ACTCTGGGTTCAGGGAAGAAA 58.581 47.619 0.00 0.00 44.15 2.52
452 453 2.106684 ACTCTGGGTTCAGGGAAGAAAC 59.893 50.000 0.00 0.00 44.15 2.78
453 454 2.106511 CTCTGGGTTCAGGGAAGAAACA 59.893 50.000 0.00 0.00 44.15 2.83
454 455 2.158667 TCTGGGTTCAGGGAAGAAACAC 60.159 50.000 0.00 0.00 41.23 3.32
455 456 1.566703 TGGGTTCAGGGAAGAAACACA 59.433 47.619 0.00 0.00 36.94 3.72
456 457 1.954382 GGGTTCAGGGAAGAAACACAC 59.046 52.381 0.00 0.00 36.94 3.82
457 458 2.422945 GGGTTCAGGGAAGAAACACACT 60.423 50.000 0.00 0.00 36.94 3.55
458 459 3.288092 GGTTCAGGGAAGAAACACACTT 58.712 45.455 0.00 0.00 35.31 3.16
459 460 3.066760 GGTTCAGGGAAGAAACACACTTG 59.933 47.826 0.00 0.00 35.31 3.16
460 461 2.297701 TCAGGGAAGAAACACACTTGC 58.702 47.619 0.00 0.00 35.52 4.01
462 463 1.692411 GGGAAGAAACACACTTGCCT 58.308 50.000 10.14 0.00 47.00 4.75
463 464 2.858745 GGGAAGAAACACACTTGCCTA 58.141 47.619 10.14 0.00 47.00 3.93
464 465 2.814336 GGGAAGAAACACACTTGCCTAG 59.186 50.000 10.14 0.00 47.00 3.02
465 466 2.226674 GGAAGAAACACACTTGCCTAGC 59.773 50.000 0.00 0.00 31.30 3.42
466 467 2.938956 AGAAACACACTTGCCTAGCT 57.061 45.000 0.00 0.00 0.00 3.32
467 468 3.214696 AGAAACACACTTGCCTAGCTT 57.785 42.857 0.00 0.00 0.00 3.74
468 469 3.142174 AGAAACACACTTGCCTAGCTTC 58.858 45.455 0.00 0.00 0.00 3.86
469 470 2.638480 AACACACTTGCCTAGCTTCA 57.362 45.000 0.00 0.00 0.00 3.02
470 471 2.638480 ACACACTTGCCTAGCTTCAA 57.362 45.000 0.00 0.00 0.00 2.69
471 472 3.146104 ACACACTTGCCTAGCTTCAAT 57.854 42.857 0.00 0.00 0.00 2.57
472 473 3.490348 ACACACTTGCCTAGCTTCAATT 58.510 40.909 0.00 0.00 0.00 2.32
473 474 3.503748 ACACACTTGCCTAGCTTCAATTC 59.496 43.478 0.00 0.00 0.00 2.17
474 475 2.744202 ACACTTGCCTAGCTTCAATTCG 59.256 45.455 0.00 0.00 0.00 3.34
475 476 1.740025 ACTTGCCTAGCTTCAATTCGC 59.260 47.619 0.00 0.00 0.00 4.70
476 477 2.012673 CTTGCCTAGCTTCAATTCGCT 58.987 47.619 0.00 0.00 40.15 4.93
477 478 2.979814 TGCCTAGCTTCAATTCGCTA 57.020 45.000 0.00 0.00 37.68 4.26
478 479 3.260475 TGCCTAGCTTCAATTCGCTAA 57.740 42.857 0.00 0.00 38.18 3.09
479 480 3.605634 TGCCTAGCTTCAATTCGCTAAA 58.394 40.909 0.00 0.00 38.18 1.85
480 481 3.623060 TGCCTAGCTTCAATTCGCTAAAG 59.377 43.478 0.00 0.00 38.18 1.85
481 482 3.547014 GCCTAGCTTCAATTCGCTAAAGC 60.547 47.826 0.00 0.00 43.44 3.51
482 483 3.002759 CCTAGCTTCAATTCGCTAAAGCC 59.997 47.826 0.00 0.00 44.01 4.35
483 484 1.398390 AGCTTCAATTCGCTAAAGCCG 59.602 47.619 2.56 0.00 44.01 5.52
484 485 1.531883 GCTTCAATTCGCTAAAGCCGG 60.532 52.381 0.00 0.00 38.51 6.13
485 486 1.064060 CTTCAATTCGCTAAAGCCGGG 59.936 52.381 2.18 0.00 37.91 5.73
486 487 1.064134 CAATTCGCTAAAGCCGGGC 59.936 57.895 12.11 12.11 37.91 6.13
487 488 1.377987 AATTCGCTAAAGCCGGGCA 60.378 52.632 23.09 0.00 37.91 5.36
488 489 0.963355 AATTCGCTAAAGCCGGGCAA 60.963 50.000 23.09 4.85 37.91 4.52
489 490 1.376609 ATTCGCTAAAGCCGGGCAAG 61.377 55.000 23.09 15.88 37.91 4.01
490 491 4.179579 CGCTAAAGCCGGGCAAGC 62.180 66.667 23.09 23.23 37.91 4.01
491 492 4.179579 GCTAAAGCCGGGCAAGCG 62.180 66.667 23.09 7.88 34.64 4.68
492 493 2.746277 CTAAAGCCGGGCAAGCGT 60.746 61.111 23.09 3.50 34.64 5.07
493 494 2.744709 TAAAGCCGGGCAAGCGTC 60.745 61.111 23.09 0.00 34.64 5.19
494 495 3.248446 TAAAGCCGGGCAAGCGTCT 62.248 57.895 23.09 0.00 34.64 4.18
498 499 4.394712 CCGGGCAAGCGTCTCCTT 62.395 66.667 0.00 0.00 0.00 3.36
499 500 2.358737 CGGGCAAGCGTCTCCTTT 60.359 61.111 0.00 0.00 0.00 3.11
500 501 2.391389 CGGGCAAGCGTCTCCTTTC 61.391 63.158 0.00 0.00 0.00 2.62
501 502 1.003233 GGGCAAGCGTCTCCTTTCT 60.003 57.895 0.00 0.00 0.00 2.52
502 503 0.606673 GGGCAAGCGTCTCCTTTCTT 60.607 55.000 0.00 0.00 0.00 2.52
503 504 1.338769 GGGCAAGCGTCTCCTTTCTTA 60.339 52.381 0.00 0.00 0.00 2.10
504 505 2.423577 GGCAAGCGTCTCCTTTCTTAA 58.576 47.619 0.00 0.00 0.00 1.85
505 506 2.812011 GGCAAGCGTCTCCTTTCTTAAA 59.188 45.455 0.00 0.00 0.00 1.52
506 507 3.252458 GGCAAGCGTCTCCTTTCTTAAAA 59.748 43.478 0.00 0.00 0.00 1.52
507 508 4.467735 GCAAGCGTCTCCTTTCTTAAAAG 58.532 43.478 0.00 0.00 41.36 2.27
508 509 4.213482 GCAAGCGTCTCCTTTCTTAAAAGA 59.787 41.667 0.00 0.00 43.90 2.52
509 510 5.277828 GCAAGCGTCTCCTTTCTTAAAAGAA 60.278 40.000 1.00 1.00 43.90 2.52
524 525 8.990163 TCTTAAAAGAAAGGTATTTGTCCTGT 57.010 30.769 0.00 0.00 35.27 4.00
525 526 9.416284 TCTTAAAAGAAAGGTATTTGTCCTGTT 57.584 29.630 0.00 0.00 35.27 3.16
532 533 9.892130 AGAAAGGTATTTGTCCTGTTAATAGAG 57.108 33.333 0.00 0.00 35.27 2.43
533 534 9.886132 GAAAGGTATTTGTCCTGTTAATAGAGA 57.114 33.333 0.00 0.00 35.27 3.10
536 537 9.838339 AGGTATTTGTCCTGTTAATAGAGAATG 57.162 33.333 0.00 0.00 33.62 2.67
537 538 9.832445 GGTATTTGTCCTGTTAATAGAGAATGA 57.168 33.333 0.00 0.00 0.00 2.57
540 541 8.737168 TTTGTCCTGTTAATAGAGAATGATGG 57.263 34.615 0.00 0.00 0.00 3.51
541 542 7.437713 TGTCCTGTTAATAGAGAATGATGGT 57.562 36.000 0.00 0.00 0.00 3.55
542 543 7.275183 TGTCCTGTTAATAGAGAATGATGGTG 58.725 38.462 0.00 0.00 0.00 4.17
543 544 6.708054 GTCCTGTTAATAGAGAATGATGGTGG 59.292 42.308 0.00 0.00 0.00 4.61
544 545 5.471456 CCTGTTAATAGAGAATGATGGTGGC 59.529 44.000 0.00 0.00 0.00 5.01
545 546 6.000246 TGTTAATAGAGAATGATGGTGGCA 58.000 37.500 0.00 0.00 0.00 4.92
546 547 5.822519 TGTTAATAGAGAATGATGGTGGCAC 59.177 40.000 9.70 9.70 0.00 5.01
547 548 4.508551 AATAGAGAATGATGGTGGCACA 57.491 40.909 20.82 6.09 0.00 4.57
548 549 2.414994 AGAGAATGATGGTGGCACAG 57.585 50.000 20.82 0.00 41.80 3.66
549 550 1.632409 AGAGAATGATGGTGGCACAGT 59.368 47.619 20.82 6.85 41.80 3.55
550 551 2.040813 AGAGAATGATGGTGGCACAGTT 59.959 45.455 20.82 5.97 41.80 3.16
551 552 2.821969 GAGAATGATGGTGGCACAGTTT 59.178 45.455 20.82 5.16 41.80 2.66
552 553 3.233507 AGAATGATGGTGGCACAGTTTT 58.766 40.909 20.82 5.90 41.80 2.43
553 554 3.006110 AGAATGATGGTGGCACAGTTTTG 59.994 43.478 20.82 0.00 41.80 2.44
554 555 1.039068 TGATGGTGGCACAGTTTTGG 58.961 50.000 20.82 0.00 41.80 3.28
555 556 0.319813 GATGGTGGCACAGTTTTGGC 60.320 55.000 20.82 0.00 41.80 4.52
559 560 2.335011 GGCACAGTTTTGGCCGTC 59.665 61.111 0.00 0.00 38.04 4.79
560 561 2.485795 GGCACAGTTTTGGCCGTCA 61.486 57.895 0.00 0.00 38.04 4.35
561 562 1.659794 GCACAGTTTTGGCCGTCAT 59.340 52.632 0.00 0.00 0.00 3.06
562 563 0.664166 GCACAGTTTTGGCCGTCATG 60.664 55.000 0.00 0.00 0.00 3.07
563 564 0.039256 CACAGTTTTGGCCGTCATGG 60.039 55.000 0.00 0.00 42.50 3.66
564 565 1.178534 ACAGTTTTGGCCGTCATGGG 61.179 55.000 0.00 0.00 38.63 4.00
565 566 0.893270 CAGTTTTGGCCGTCATGGGA 60.893 55.000 0.00 0.00 38.63 4.37
566 567 0.178975 AGTTTTGGCCGTCATGGGAA 60.179 50.000 0.00 0.00 38.63 3.97
567 568 0.894835 GTTTTGGCCGTCATGGGAAT 59.105 50.000 0.00 0.00 38.63 3.01
568 569 0.894141 TTTTGGCCGTCATGGGAATG 59.106 50.000 0.00 0.00 38.63 2.67
569 570 0.969917 TTTGGCCGTCATGGGAATGG 60.970 55.000 0.00 0.00 38.63 3.16
570 571 2.519302 GGCCGTCATGGGAATGGG 60.519 66.667 0.00 0.00 38.63 4.00
571 572 2.595095 GCCGTCATGGGAATGGGA 59.405 61.111 0.00 0.00 38.63 4.37
572 573 1.526917 GCCGTCATGGGAATGGGAG 60.527 63.158 0.00 0.00 38.63 4.30
573 574 1.526917 CCGTCATGGGAATGGGAGC 60.527 63.158 0.00 0.00 0.00 4.70
574 575 1.224315 CGTCATGGGAATGGGAGCA 59.776 57.895 0.00 0.00 0.00 4.26
575 576 0.179009 CGTCATGGGAATGGGAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
576 577 1.072173 CGTCATGGGAATGGGAGCATA 59.928 52.381 0.00 0.00 0.00 3.14
577 578 2.787994 GTCATGGGAATGGGAGCATAG 58.212 52.381 0.00 0.00 0.00 2.23
578 579 2.107204 GTCATGGGAATGGGAGCATAGT 59.893 50.000 0.00 0.00 0.00 2.12
579 580 2.785269 TCATGGGAATGGGAGCATAGTT 59.215 45.455 0.00 0.00 0.00 2.24
580 581 3.980022 TCATGGGAATGGGAGCATAGTTA 59.020 43.478 0.00 0.00 0.00 2.24
581 582 4.603171 TCATGGGAATGGGAGCATAGTTAT 59.397 41.667 0.00 0.00 0.00 1.89
582 583 4.640771 TGGGAATGGGAGCATAGTTATC 57.359 45.455 0.00 0.00 0.00 1.75
583 584 3.330701 TGGGAATGGGAGCATAGTTATCC 59.669 47.826 0.00 0.00 0.00 2.59
584 585 3.330701 GGGAATGGGAGCATAGTTATCCA 59.669 47.826 0.00 0.00 34.62 3.41
585 586 4.202567 GGGAATGGGAGCATAGTTATCCAA 60.203 45.833 0.00 0.00 34.62 3.53
586 587 5.385198 GGAATGGGAGCATAGTTATCCAAA 58.615 41.667 0.00 0.00 34.62 3.28
587 588 5.241728 GGAATGGGAGCATAGTTATCCAAAC 59.758 44.000 0.00 0.00 34.62 2.93
588 589 5.653255 ATGGGAGCATAGTTATCCAAACT 57.347 39.130 0.00 0.00 34.62 2.66
589 590 5.450818 TGGGAGCATAGTTATCCAAACTT 57.549 39.130 0.00 0.00 34.62 2.66
590 591 5.826643 TGGGAGCATAGTTATCCAAACTTT 58.173 37.500 0.00 0.00 34.62 2.66
591 592 6.252995 TGGGAGCATAGTTATCCAAACTTTT 58.747 36.000 0.00 0.00 34.62 2.27
592 593 6.377146 TGGGAGCATAGTTATCCAAACTTTTC 59.623 38.462 0.00 0.00 34.62 2.29
593 594 6.603599 GGGAGCATAGTTATCCAAACTTTTCT 59.396 38.462 0.00 0.00 34.62 2.52
594 595 7.773690 GGGAGCATAGTTATCCAAACTTTTCTA 59.226 37.037 0.00 0.00 34.62 2.10
595 596 9.343539 GGAGCATAGTTATCCAAACTTTTCTAT 57.656 33.333 0.00 0.00 33.08 1.98
620 621 9.950496 ATTTACAAAACAGTAGAGTGATCATCT 57.050 29.630 0.00 5.83 0.00 2.90
621 622 9.778741 TTTACAAAACAGTAGAGTGATCATCTT 57.221 29.630 0.00 0.00 0.00 2.40
622 623 9.778741 TTACAAAACAGTAGAGTGATCATCTTT 57.221 29.630 0.00 0.00 0.00 2.52
625 626 7.664082 AAACAGTAGAGTGATCATCTTTGTG 57.336 36.000 0.00 4.66 0.00 3.33
871 873 0.675522 CTCCGCCGTGTGGGTAAAAT 60.676 55.000 4.03 0.00 38.44 1.82
910 912 1.272985 CCCCTCACACTCTCTCCTCTT 60.273 57.143 0.00 0.00 0.00 2.85
1215 1285 2.951642 ACGATCCGAATTTCAATGGCAT 59.048 40.909 0.00 0.00 0.00 4.40
1766 2133 5.306114 AGGCCTAAACTGTTGAGTAGTTT 57.694 39.130 1.29 8.04 46.69 2.66
2035 2420 9.538508 AAGCAATATCTTGAAATTAAGATTGCC 57.461 29.630 17.70 7.49 45.17 4.52
2206 2600 5.549742 ATCAGAAGGAGCAGAAGGAATAG 57.450 43.478 0.00 0.00 0.00 1.73
2235 2629 5.311265 TGTGAAGATTGTTGAGCTTGAGAT 58.689 37.500 0.00 0.00 33.28 2.75
2759 3195 5.618056 ATGTGAGTGCACTTTGATGTTAG 57.382 39.130 22.65 0.00 45.36 2.34
2804 3240 9.827198 AGAATTTGATATAAGATATTTGGGGCA 57.173 29.630 0.00 0.00 0.00 5.36
3209 6468 5.376625 AGCCAACTTGACACAAATAGAGAA 58.623 37.500 0.00 0.00 0.00 2.87
3221 6480 9.204570 GACACAAATAGAGAAGCTTAAGTACAA 57.795 33.333 0.00 0.00 0.00 2.41
3422 6762 7.366847 AGCATAGAAATAGTCTTTCAGCCTA 57.633 36.000 4.07 0.00 37.84 3.93
3424 6764 6.425417 GCATAGAAATAGTCTTTCAGCCTACC 59.575 42.308 4.07 0.00 37.84 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.956426 CCTACAAATAAAACAAGCTTCATAGGA 58.044 33.333 0.00 0.00 0.00 2.94
21 22 9.247861 AGATCCTACAAATAAAACAAGCTTCAT 57.752 29.630 0.00 0.00 0.00 2.57
157 158 4.601019 CAGCATAGGAAAAGGCATAAACG 58.399 43.478 0.00 0.00 0.00 3.60
256 257 8.420222 TCTTTATCCAATGCAGAAACAGAAAAA 58.580 29.630 0.00 0.00 0.00 1.94
257 258 7.950512 TCTTTATCCAATGCAGAAACAGAAAA 58.049 30.769 0.00 0.00 0.00 2.29
258 259 7.523293 TCTTTATCCAATGCAGAAACAGAAA 57.477 32.000 0.00 0.00 0.00 2.52
259 260 7.523293 TTCTTTATCCAATGCAGAAACAGAA 57.477 32.000 0.00 0.00 0.00 3.02
260 261 7.231317 ACTTTCTTTATCCAATGCAGAAACAGA 59.769 33.333 0.00 0.00 31.67 3.41
261 262 7.373493 ACTTTCTTTATCCAATGCAGAAACAG 58.627 34.615 0.00 0.00 31.67 3.16
262 263 7.014134 TGACTTTCTTTATCCAATGCAGAAACA 59.986 33.333 0.00 0.00 31.67 2.83
263 264 7.370383 TGACTTTCTTTATCCAATGCAGAAAC 58.630 34.615 0.00 0.00 31.67 2.78
264 265 7.231317 ACTGACTTTCTTTATCCAATGCAGAAA 59.769 33.333 0.00 0.00 33.48 2.52
265 266 6.716628 ACTGACTTTCTTTATCCAATGCAGAA 59.283 34.615 0.00 0.00 0.00 3.02
266 267 6.240894 ACTGACTTTCTTTATCCAATGCAGA 58.759 36.000 0.00 0.00 0.00 4.26
267 268 6.373774 AGACTGACTTTCTTTATCCAATGCAG 59.626 38.462 0.00 0.00 0.00 4.41
268 269 6.240894 AGACTGACTTTCTTTATCCAATGCA 58.759 36.000 0.00 0.00 0.00 3.96
269 270 6.749923 AGACTGACTTTCTTTATCCAATGC 57.250 37.500 0.00 0.00 0.00 3.56
272 273 9.877178 GAGATAAGACTGACTTTCTTTATCCAA 57.123 33.333 0.00 0.00 39.72 3.53
273 274 9.261035 AGAGATAAGACTGACTTTCTTTATCCA 57.739 33.333 0.00 0.00 39.72 3.41
280 281 9.474313 AGTCAATAGAGATAAGACTGACTTTCT 57.526 33.333 0.00 1.89 39.08 2.52
288 289 8.995027 AGTCATCAGTCAATAGAGATAAGACT 57.005 34.615 0.00 0.00 39.95 3.24
289 290 9.462174 CAAGTCATCAGTCAATAGAGATAAGAC 57.538 37.037 0.00 0.00 0.00 3.01
290 291 8.637099 CCAAGTCATCAGTCAATAGAGATAAGA 58.363 37.037 0.00 0.00 0.00 2.10
291 292 8.637099 TCCAAGTCATCAGTCAATAGAGATAAG 58.363 37.037 0.00 0.00 0.00 1.73
292 293 8.417106 GTCCAAGTCATCAGTCAATAGAGATAA 58.583 37.037 0.00 0.00 0.00 1.75
293 294 7.782168 AGTCCAAGTCATCAGTCAATAGAGATA 59.218 37.037 0.00 0.00 0.00 1.98
294 295 6.610830 AGTCCAAGTCATCAGTCAATAGAGAT 59.389 38.462 0.00 0.00 0.00 2.75
295 296 5.954752 AGTCCAAGTCATCAGTCAATAGAGA 59.045 40.000 0.00 0.00 0.00 3.10
296 297 6.219417 AGTCCAAGTCATCAGTCAATAGAG 57.781 41.667 0.00 0.00 0.00 2.43
297 298 7.397476 AGTTAGTCCAAGTCATCAGTCAATAGA 59.603 37.037 0.00 0.00 0.00 1.98
298 299 7.551585 AGTTAGTCCAAGTCATCAGTCAATAG 58.448 38.462 0.00 0.00 0.00 1.73
299 300 7.482169 AGTTAGTCCAAGTCATCAGTCAATA 57.518 36.000 0.00 0.00 0.00 1.90
300 301 6.365970 AGTTAGTCCAAGTCATCAGTCAAT 57.634 37.500 0.00 0.00 0.00 2.57
301 302 5.808366 AGTTAGTCCAAGTCATCAGTCAA 57.192 39.130 0.00 0.00 0.00 3.18
302 303 6.010850 ACTAGTTAGTCCAAGTCATCAGTCA 58.989 40.000 0.00 0.00 0.00 3.41
303 304 6.518208 ACTAGTTAGTCCAAGTCATCAGTC 57.482 41.667 0.00 0.00 0.00 3.51
304 305 6.518208 GACTAGTTAGTCCAAGTCATCAGT 57.482 41.667 7.88 0.00 45.33 3.41
317 318 7.091443 GTCAGTGCAATTAGTGACTAGTTAGT 58.909 38.462 0.00 0.00 44.08 2.24
318 319 7.090808 TGTCAGTGCAATTAGTGACTAGTTAG 58.909 38.462 14.42 0.00 46.38 2.34
319 320 6.988522 TGTCAGTGCAATTAGTGACTAGTTA 58.011 36.000 14.42 0.00 46.38 2.24
320 321 5.853936 TGTCAGTGCAATTAGTGACTAGTT 58.146 37.500 14.42 0.00 46.38 2.24
321 322 5.011125 ACTGTCAGTGCAATTAGTGACTAGT 59.989 40.000 4.21 12.79 46.38 2.57
322 323 5.473931 ACTGTCAGTGCAATTAGTGACTAG 58.526 41.667 4.21 12.35 46.38 2.57
323 324 5.468540 ACTGTCAGTGCAATTAGTGACTA 57.531 39.130 4.21 0.00 46.38 2.59
324 325 4.310769 GACTGTCAGTGCAATTAGTGACT 58.689 43.478 11.04 0.00 46.38 3.41
325 326 3.121944 CGACTGTCAGTGCAATTAGTGAC 59.878 47.826 11.04 8.64 46.41 3.67
326 327 3.317150 CGACTGTCAGTGCAATTAGTGA 58.683 45.455 11.04 0.00 0.00 3.41
327 328 2.413112 CCGACTGTCAGTGCAATTAGTG 59.587 50.000 11.04 0.00 0.00 2.74
328 329 2.037251 ACCGACTGTCAGTGCAATTAGT 59.963 45.455 11.04 0.00 0.00 2.24
329 330 2.413112 CACCGACTGTCAGTGCAATTAG 59.587 50.000 11.04 0.00 0.00 1.73
330 331 2.412870 CACCGACTGTCAGTGCAATTA 58.587 47.619 11.04 0.00 0.00 1.40
331 332 1.229428 CACCGACTGTCAGTGCAATT 58.771 50.000 11.04 0.00 0.00 2.32
332 333 2.918571 CACCGACTGTCAGTGCAAT 58.081 52.632 11.04 0.00 0.00 3.56
333 334 4.436515 CACCGACTGTCAGTGCAA 57.563 55.556 11.04 0.00 0.00 4.08
336 337 0.530650 AGTTGCACCGACTGTCAGTG 60.531 55.000 17.65 17.65 34.58 3.66
337 338 0.178068 AAGTTGCACCGACTGTCAGT 59.822 50.000 4.81 4.81 0.00 3.41
338 339 1.261619 GAAAGTTGCACCGACTGTCAG 59.738 52.381 8.73 0.00 33.46 3.51
339 340 1.295792 GAAAGTTGCACCGACTGTCA 58.704 50.000 8.73 0.00 33.46 3.58
340 341 0.586802 GGAAAGTTGCACCGACTGTC 59.413 55.000 0.00 0.00 32.69 3.51
341 342 2.702847 GGAAAGTTGCACCGACTGT 58.297 52.632 0.00 0.00 0.00 3.55
347 348 1.502190 GCTAGCGGAAAGTTGCACC 59.498 57.895 0.00 0.00 0.00 5.01
348 349 1.132640 CGCTAGCGGAAAGTTGCAC 59.867 57.895 29.29 0.00 35.56 4.57
349 350 0.391130 ATCGCTAGCGGAAAGTTGCA 60.391 50.000 34.76 14.33 40.25 4.08
350 351 0.026803 CATCGCTAGCGGAAAGTTGC 59.973 55.000 34.76 0.00 40.25 4.17
351 352 1.324736 GACATCGCTAGCGGAAAGTTG 59.675 52.381 34.76 22.78 40.25 3.16
352 353 1.067142 TGACATCGCTAGCGGAAAGTT 60.067 47.619 34.76 14.73 40.25 2.66
353 354 0.530744 TGACATCGCTAGCGGAAAGT 59.469 50.000 34.76 25.90 40.25 2.66
354 355 1.640428 TTGACATCGCTAGCGGAAAG 58.360 50.000 34.76 23.19 40.25 2.62
355 356 2.087501 TTTGACATCGCTAGCGGAAA 57.912 45.000 34.76 21.45 40.25 3.13
356 357 2.201732 GATTTGACATCGCTAGCGGAA 58.798 47.619 34.76 18.98 40.25 4.30
357 358 1.538204 GGATTTGACATCGCTAGCGGA 60.538 52.381 34.76 22.16 40.25 5.54
358 359 0.861837 GGATTTGACATCGCTAGCGG 59.138 55.000 34.76 22.77 40.25 5.52
359 360 1.570813 TGGATTTGACATCGCTAGCG 58.429 50.000 30.91 30.91 41.35 4.26
360 361 3.198068 TCTTGGATTTGACATCGCTAGC 58.802 45.455 4.06 4.06 0.00 3.42
361 362 4.872691 AGTTCTTGGATTTGACATCGCTAG 59.127 41.667 0.00 0.00 0.00 3.42
362 363 4.832248 AGTTCTTGGATTTGACATCGCTA 58.168 39.130 0.00 0.00 0.00 4.26
363 364 3.679389 AGTTCTTGGATTTGACATCGCT 58.321 40.909 0.00 0.00 0.00 4.93
364 365 4.161333 CAAGTTCTTGGATTTGACATCGC 58.839 43.478 4.80 0.00 0.00 4.58
365 366 4.726416 CCAAGTTCTTGGATTTGACATCG 58.274 43.478 22.67 0.00 44.82 3.84
366 367 4.022068 TGCCAAGTTCTTGGATTTGACATC 60.022 41.667 28.87 12.40 44.82 3.06
367 368 3.896888 TGCCAAGTTCTTGGATTTGACAT 59.103 39.130 28.87 0.00 44.82 3.06
368 369 3.295093 TGCCAAGTTCTTGGATTTGACA 58.705 40.909 28.87 16.13 44.82 3.58
369 370 4.320608 TTGCCAAGTTCTTGGATTTGAC 57.679 40.909 28.87 14.14 44.82 3.18
370 371 5.549742 AATTGCCAAGTTCTTGGATTTGA 57.450 34.783 28.87 12.95 44.82 2.69
371 372 5.345741 CGTAATTGCCAAGTTCTTGGATTTG 59.654 40.000 28.87 14.97 44.82 2.32
372 373 5.242838 TCGTAATTGCCAAGTTCTTGGATTT 59.757 36.000 28.87 20.36 44.82 2.17
373 374 4.764823 TCGTAATTGCCAAGTTCTTGGATT 59.235 37.500 28.87 22.16 44.82 3.01
374 375 4.331968 TCGTAATTGCCAAGTTCTTGGAT 58.668 39.130 28.87 15.22 44.82 3.41
375 376 3.745799 TCGTAATTGCCAAGTTCTTGGA 58.254 40.909 28.87 13.80 44.82 3.53
376 377 4.497473 TTCGTAATTGCCAAGTTCTTGG 57.503 40.909 22.75 22.75 44.82 3.61
377 378 5.460646 ACATTCGTAATTGCCAAGTTCTTG 58.539 37.500 5.66 5.66 0.00 3.02
378 379 5.240623 TGACATTCGTAATTGCCAAGTTCTT 59.759 36.000 0.00 0.00 0.00 2.52
379 380 4.759693 TGACATTCGTAATTGCCAAGTTCT 59.240 37.500 0.00 0.00 0.00 3.01
380 381 4.851558 GTGACATTCGTAATTGCCAAGTTC 59.148 41.667 0.00 0.00 0.00 3.01
381 382 4.277174 TGTGACATTCGTAATTGCCAAGTT 59.723 37.500 0.00 0.00 0.00 2.66
382 383 3.818210 TGTGACATTCGTAATTGCCAAGT 59.182 39.130 0.00 0.00 0.00 3.16
383 384 4.158384 GTGTGACATTCGTAATTGCCAAG 58.842 43.478 0.00 0.00 0.00 3.61
384 385 3.565902 TGTGTGACATTCGTAATTGCCAA 59.434 39.130 0.00 0.00 0.00 4.52
385 386 3.058570 GTGTGTGACATTCGTAATTGCCA 60.059 43.478 0.00 0.00 0.00 4.92
386 387 3.058570 TGTGTGTGACATTCGTAATTGCC 60.059 43.478 0.00 0.00 0.00 4.52
387 388 4.140518 TGTGTGTGACATTCGTAATTGC 57.859 40.909 0.00 0.00 0.00 3.56
388 389 6.142139 ACATTGTGTGTGACATTCGTAATTG 58.858 36.000 0.00 0.00 40.28 2.32
389 390 6.312399 ACATTGTGTGTGACATTCGTAATT 57.688 33.333 0.00 0.00 40.28 1.40
390 391 5.940192 ACATTGTGTGTGACATTCGTAAT 57.060 34.783 0.00 0.00 40.28 1.89
391 392 5.743026 AACATTGTGTGTGACATTCGTAA 57.257 34.783 0.00 0.00 41.14 3.18
392 393 5.743026 AAACATTGTGTGTGACATTCGTA 57.257 34.783 0.00 0.00 41.14 3.43
393 394 4.630894 AAACATTGTGTGTGACATTCGT 57.369 36.364 0.00 0.00 41.14 3.85
394 395 5.273170 AGAAAACATTGTGTGTGACATTCG 58.727 37.500 0.00 0.00 41.14 3.34
395 396 6.264832 TGAGAAAACATTGTGTGTGACATTC 58.735 36.000 0.00 0.00 41.14 2.67
396 397 6.206395 TGAGAAAACATTGTGTGTGACATT 57.794 33.333 0.00 0.00 41.14 2.71
397 398 5.833406 TGAGAAAACATTGTGTGTGACAT 57.167 34.783 0.00 0.00 41.14 3.06
398 399 5.635417 TTGAGAAAACATTGTGTGTGACA 57.365 34.783 0.00 0.00 41.14 3.58
399 400 6.092748 ACTTTGAGAAAACATTGTGTGTGAC 58.907 36.000 0.00 0.00 41.14 3.67
400 401 6.266168 ACTTTGAGAAAACATTGTGTGTGA 57.734 33.333 0.00 0.00 41.14 3.58
401 402 6.949578 AACTTTGAGAAAACATTGTGTGTG 57.050 33.333 0.00 0.00 41.14 3.82
402 403 9.651913 AATTAACTTTGAGAAAACATTGTGTGT 57.348 25.926 0.00 0.00 44.84 3.72
422 423 6.243148 TCCCTGAACCCAGAGTTAAATTAAC 58.757 40.000 7.75 7.75 43.02 2.01
423 424 6.457159 TCCCTGAACCCAGAGTTAAATTAA 57.543 37.500 0.00 0.00 43.02 1.40
424 425 6.273730 TCTTCCCTGAACCCAGAGTTAAATTA 59.726 38.462 0.00 0.00 43.02 1.40
425 426 5.074515 TCTTCCCTGAACCCAGAGTTAAATT 59.925 40.000 0.00 0.00 43.02 1.82
426 427 4.601857 TCTTCCCTGAACCCAGAGTTAAAT 59.398 41.667 0.00 0.00 43.02 1.40
427 428 3.977999 TCTTCCCTGAACCCAGAGTTAAA 59.022 43.478 0.00 0.00 43.02 1.52
428 429 3.593942 TCTTCCCTGAACCCAGAGTTAA 58.406 45.455 0.00 0.00 43.02 2.01
429 430 3.269592 TCTTCCCTGAACCCAGAGTTA 57.730 47.619 0.00 0.00 43.02 2.24
430 431 2.118403 TCTTCCCTGAACCCAGAGTT 57.882 50.000 0.00 0.00 43.02 3.01
431 432 2.106684 GTTTCTTCCCTGAACCCAGAGT 59.893 50.000 0.00 0.00 43.02 3.24
432 433 2.106511 TGTTTCTTCCCTGAACCCAGAG 59.893 50.000 0.00 0.00 43.02 3.35
433 434 2.131854 TGTTTCTTCCCTGAACCCAGA 58.868 47.619 0.00 0.00 43.02 3.86
434 435 2.230660 GTGTTTCTTCCCTGAACCCAG 58.769 52.381 0.00 0.00 40.09 4.45
435 436 1.566703 TGTGTTTCTTCCCTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
436 437 1.954382 GTGTGTTTCTTCCCTGAACCC 59.046 52.381 0.00 0.00 0.00 4.11
437 438 2.932261 AGTGTGTTTCTTCCCTGAACC 58.068 47.619 0.00 0.00 0.00 3.62
438 439 3.489229 GCAAGTGTGTTTCTTCCCTGAAC 60.489 47.826 0.00 0.00 0.00 3.18
439 440 2.687935 GCAAGTGTGTTTCTTCCCTGAA 59.312 45.455 0.00 0.00 0.00 3.02
440 441 2.297701 GCAAGTGTGTTTCTTCCCTGA 58.702 47.619 0.00 0.00 0.00 3.86
441 442 1.338020 GGCAAGTGTGTTTCTTCCCTG 59.662 52.381 0.00 0.00 0.00 4.45
442 443 1.215423 AGGCAAGTGTGTTTCTTCCCT 59.785 47.619 0.00 0.00 29.19 4.20
443 444 1.692411 AGGCAAGTGTGTTTCTTCCC 58.308 50.000 0.00 0.00 0.00 3.97
444 445 2.226674 GCTAGGCAAGTGTGTTTCTTCC 59.773 50.000 0.00 0.00 0.00 3.46
445 446 3.142174 AGCTAGGCAAGTGTGTTTCTTC 58.858 45.455 0.00 0.00 0.00 2.87
446 447 3.214696 AGCTAGGCAAGTGTGTTTCTT 57.785 42.857 0.00 0.00 0.00 2.52
447 448 2.938956 AGCTAGGCAAGTGTGTTTCT 57.061 45.000 0.00 0.00 0.00 2.52
448 449 2.878406 TGAAGCTAGGCAAGTGTGTTTC 59.122 45.455 0.00 0.00 0.00 2.78
449 450 2.930950 TGAAGCTAGGCAAGTGTGTTT 58.069 42.857 0.00 0.00 0.00 2.83
450 451 2.638480 TGAAGCTAGGCAAGTGTGTT 57.362 45.000 0.00 0.00 0.00 3.32
451 452 2.638480 TTGAAGCTAGGCAAGTGTGT 57.362 45.000 0.00 0.00 0.00 3.72
452 453 3.425359 CGAATTGAAGCTAGGCAAGTGTG 60.425 47.826 2.25 0.00 0.00 3.82
453 454 2.744202 CGAATTGAAGCTAGGCAAGTGT 59.256 45.455 2.25 0.00 0.00 3.55
454 455 2.476854 GCGAATTGAAGCTAGGCAAGTG 60.477 50.000 2.25 0.00 0.00 3.16
455 456 1.740025 GCGAATTGAAGCTAGGCAAGT 59.260 47.619 0.00 0.00 0.00 3.16
456 457 2.012673 AGCGAATTGAAGCTAGGCAAG 58.987 47.619 0.00 0.00 42.60 4.01
457 458 2.113860 AGCGAATTGAAGCTAGGCAA 57.886 45.000 0.00 0.00 42.60 4.52
458 459 2.979814 TAGCGAATTGAAGCTAGGCA 57.020 45.000 0.00 0.00 44.15 4.75
459 460 3.547014 GCTTTAGCGAATTGAAGCTAGGC 60.547 47.826 0.00 12.97 45.31 3.93
460 461 3.002759 GGCTTTAGCGAATTGAAGCTAGG 59.997 47.826 6.85 6.17 45.31 3.02
461 462 3.302740 CGGCTTTAGCGAATTGAAGCTAG 60.303 47.826 6.85 0.00 45.31 3.42
462 463 2.607635 CGGCTTTAGCGAATTGAAGCTA 59.392 45.455 6.85 3.57 44.15 3.32
463 464 1.398390 CGGCTTTAGCGAATTGAAGCT 59.602 47.619 6.85 5.23 46.53 3.74
464 465 1.531883 CCGGCTTTAGCGAATTGAAGC 60.532 52.381 0.00 0.00 42.76 3.86
465 466 1.064060 CCCGGCTTTAGCGAATTGAAG 59.936 52.381 0.00 0.00 43.26 3.02
466 467 1.091537 CCCGGCTTTAGCGAATTGAA 58.908 50.000 0.00 0.00 43.26 2.69
467 468 1.373590 GCCCGGCTTTAGCGAATTGA 61.374 55.000 0.71 0.00 43.26 2.57
468 469 1.064134 GCCCGGCTTTAGCGAATTG 59.936 57.895 0.71 0.00 43.26 2.32
469 470 0.963355 TTGCCCGGCTTTAGCGAATT 60.963 50.000 11.61 0.00 43.26 2.17
470 471 1.376609 CTTGCCCGGCTTTAGCGAAT 61.377 55.000 11.61 0.00 43.26 3.34
471 472 2.032834 TTGCCCGGCTTTAGCGAA 59.967 55.556 11.61 0.00 43.26 4.70
472 473 2.435938 CTTGCCCGGCTTTAGCGA 60.436 61.111 11.61 0.00 43.26 4.93
473 474 4.179579 GCTTGCCCGGCTTTAGCG 62.180 66.667 11.61 0.00 43.26 4.26
474 475 4.179579 CGCTTGCCCGGCTTTAGC 62.180 66.667 11.61 14.93 41.14 3.09
475 476 2.746277 ACGCTTGCCCGGCTTTAG 60.746 61.111 11.61 6.68 0.00 1.85
476 477 2.744709 GACGCTTGCCCGGCTTTA 60.745 61.111 11.61 0.00 32.31 1.85
477 478 4.643387 AGACGCTTGCCCGGCTTT 62.643 61.111 11.61 0.00 46.11 3.51
481 482 3.901797 AAAGGAGACGCTTGCCCGG 62.902 63.158 0.00 0.00 0.00 5.73
482 483 2.358737 AAAGGAGACGCTTGCCCG 60.359 61.111 0.00 0.00 0.00 6.13
483 484 0.606673 AAGAAAGGAGACGCTTGCCC 60.607 55.000 0.00 0.00 0.00 5.36
484 485 2.094762 TAAGAAAGGAGACGCTTGCC 57.905 50.000 0.00 0.00 0.00 4.52
485 486 4.213482 TCTTTTAAGAAAGGAGACGCTTGC 59.787 41.667 0.00 0.00 42.05 4.01
486 487 5.924475 TCTTTTAAGAAAGGAGACGCTTG 57.076 39.130 0.00 0.00 42.05 4.01
487 488 6.937436 TTTCTTTTAAGAAAGGAGACGCTT 57.063 33.333 12.38 0.00 46.80 4.68
498 499 9.416284 ACAGGACAAATACCTTTCTTTTAAGAA 57.584 29.630 0.89 0.89 42.91 2.52
499 500 8.990163 ACAGGACAAATACCTTTCTTTTAAGA 57.010 30.769 0.00 0.00 35.35 2.10
506 507 9.892130 CTCTATTAACAGGACAAATACCTTTCT 57.108 33.333 0.00 0.00 35.35 2.52
507 508 9.886132 TCTCTATTAACAGGACAAATACCTTTC 57.114 33.333 0.00 0.00 35.35 2.62
510 511 9.838339 CATTCTCTATTAACAGGACAAATACCT 57.162 33.333 0.00 0.00 38.40 3.08
511 512 9.832445 TCATTCTCTATTAACAGGACAAATACC 57.168 33.333 0.00 0.00 0.00 2.73
514 515 9.347240 CCATCATTCTCTATTAACAGGACAAAT 57.653 33.333 0.00 0.00 0.00 2.32
515 516 8.328758 ACCATCATTCTCTATTAACAGGACAAA 58.671 33.333 0.00 0.00 0.00 2.83
516 517 7.770433 CACCATCATTCTCTATTAACAGGACAA 59.230 37.037 0.00 0.00 0.00 3.18
517 518 7.275183 CACCATCATTCTCTATTAACAGGACA 58.725 38.462 0.00 0.00 0.00 4.02
518 519 6.708054 CCACCATCATTCTCTATTAACAGGAC 59.292 42.308 0.00 0.00 0.00 3.85
519 520 6.688922 GCCACCATCATTCTCTATTAACAGGA 60.689 42.308 0.00 0.00 0.00 3.86
520 521 5.471456 GCCACCATCATTCTCTATTAACAGG 59.529 44.000 0.00 0.00 0.00 4.00
521 522 6.017605 GTGCCACCATCATTCTCTATTAACAG 60.018 42.308 0.00 0.00 0.00 3.16
522 523 5.822519 GTGCCACCATCATTCTCTATTAACA 59.177 40.000 0.00 0.00 0.00 2.41
523 524 5.822519 TGTGCCACCATCATTCTCTATTAAC 59.177 40.000 0.00 0.00 0.00 2.01
524 525 6.000246 TGTGCCACCATCATTCTCTATTAA 58.000 37.500 0.00 0.00 0.00 1.40
525 526 5.130975 ACTGTGCCACCATCATTCTCTATTA 59.869 40.000 0.00 0.00 0.00 0.98
526 527 4.080129 ACTGTGCCACCATCATTCTCTATT 60.080 41.667 0.00 0.00 0.00 1.73
527 528 3.457380 ACTGTGCCACCATCATTCTCTAT 59.543 43.478 0.00 0.00 0.00 1.98
528 529 2.840038 ACTGTGCCACCATCATTCTCTA 59.160 45.455 0.00 0.00 0.00 2.43
529 530 1.632409 ACTGTGCCACCATCATTCTCT 59.368 47.619 0.00 0.00 0.00 3.10
530 531 2.119801 ACTGTGCCACCATCATTCTC 57.880 50.000 0.00 0.00 0.00 2.87
531 532 2.592102 AACTGTGCCACCATCATTCT 57.408 45.000 0.00 0.00 0.00 2.40
532 533 3.319755 CAAAACTGTGCCACCATCATTC 58.680 45.455 0.00 0.00 0.00 2.67
533 534 2.037511 CCAAAACTGTGCCACCATCATT 59.962 45.455 0.00 0.00 0.00 2.57
534 535 1.619827 CCAAAACTGTGCCACCATCAT 59.380 47.619 0.00 0.00 0.00 2.45
535 536 1.039068 CCAAAACTGTGCCACCATCA 58.961 50.000 0.00 0.00 0.00 3.07
536 537 0.319813 GCCAAAACTGTGCCACCATC 60.320 55.000 0.00 0.00 0.00 3.51
537 538 1.747774 GCCAAAACTGTGCCACCAT 59.252 52.632 0.00 0.00 0.00 3.55
538 539 2.430610 GGCCAAAACTGTGCCACCA 61.431 57.895 0.00 0.00 44.70 4.17
539 540 2.421314 GGCCAAAACTGTGCCACC 59.579 61.111 0.00 0.00 44.70 4.61
540 541 2.027460 CGGCCAAAACTGTGCCAC 59.973 61.111 2.24 0.00 45.63 5.01
541 542 2.441164 ACGGCCAAAACTGTGCCA 60.441 55.556 2.24 0.00 45.63 4.92
542 543 1.805428 ATGACGGCCAAAACTGTGCC 61.805 55.000 2.24 0.00 41.85 5.01
543 544 0.664166 CATGACGGCCAAAACTGTGC 60.664 55.000 2.24 0.00 0.00 4.57
544 545 0.039256 CCATGACGGCCAAAACTGTG 60.039 55.000 2.24 0.00 0.00 3.66
545 546 1.178534 CCCATGACGGCCAAAACTGT 61.179 55.000 2.24 0.00 0.00 3.55
546 547 0.893270 TCCCATGACGGCCAAAACTG 60.893 55.000 2.24 0.00 0.00 3.16
547 548 0.178975 TTCCCATGACGGCCAAAACT 60.179 50.000 2.24 0.00 0.00 2.66
548 549 0.894835 ATTCCCATGACGGCCAAAAC 59.105 50.000 2.24 0.00 0.00 2.43
549 550 0.894141 CATTCCCATGACGGCCAAAA 59.106 50.000 2.24 0.00 31.07 2.44
550 551 0.969917 CCATTCCCATGACGGCCAAA 60.970 55.000 2.24 0.00 31.07 3.28
551 552 1.379710 CCATTCCCATGACGGCCAA 60.380 57.895 2.24 0.00 31.07 4.52
552 553 2.275089 CCATTCCCATGACGGCCA 59.725 61.111 2.24 0.00 31.07 5.36
553 554 2.519302 CCCATTCCCATGACGGCC 60.519 66.667 0.00 0.00 31.07 6.13
554 555 1.526917 CTCCCATTCCCATGACGGC 60.527 63.158 0.00 0.00 31.07 5.68
555 556 1.526917 GCTCCCATTCCCATGACGG 60.527 63.158 0.00 0.00 31.07 4.79
556 557 0.179009 ATGCTCCCATTCCCATGACG 60.179 55.000 0.00 0.00 31.07 4.35
557 558 2.107204 ACTATGCTCCCATTCCCATGAC 59.893 50.000 0.00 0.00 32.85 3.06
558 559 2.421725 ACTATGCTCCCATTCCCATGA 58.578 47.619 0.00 0.00 32.85 3.07
559 560 2.965671 ACTATGCTCCCATTCCCATG 57.034 50.000 0.00 0.00 32.85 3.66
560 561 4.018050 GGATAACTATGCTCCCATTCCCAT 60.018 45.833 0.00 0.00 32.85 4.00
561 562 3.330701 GGATAACTATGCTCCCATTCCCA 59.669 47.826 0.00 0.00 32.85 4.37
562 563 3.330701 TGGATAACTATGCTCCCATTCCC 59.669 47.826 0.00 0.00 32.85 3.97
563 564 4.640771 TGGATAACTATGCTCCCATTCC 57.359 45.455 0.00 0.00 32.85 3.01
564 565 6.064717 AGTTTGGATAACTATGCTCCCATTC 58.935 40.000 0.00 0.00 32.85 2.67
565 566 6.018433 AGTTTGGATAACTATGCTCCCATT 57.982 37.500 0.00 0.00 32.85 3.16
566 567 5.653255 AGTTTGGATAACTATGCTCCCAT 57.347 39.130 0.00 0.00 35.44 4.00
567 568 5.450818 AAGTTTGGATAACTATGCTCCCA 57.549 39.130 0.00 0.00 0.00 4.37
568 569 6.603599 AGAAAAGTTTGGATAACTATGCTCCC 59.396 38.462 0.00 0.00 0.00 4.30
569 570 7.631717 AGAAAAGTTTGGATAACTATGCTCC 57.368 36.000 0.00 0.00 0.00 4.70
594 595 9.950496 AGATGATCACTCTACTGTTTTGTAAAT 57.050 29.630 0.00 0.00 0.00 1.40
595 596 9.778741 AAGATGATCACTCTACTGTTTTGTAAA 57.221 29.630 0.00 0.00 0.00 2.01
596 597 9.778741 AAAGATGATCACTCTACTGTTTTGTAA 57.221 29.630 0.00 0.00 0.00 2.41
597 598 9.208022 CAAAGATGATCACTCTACTGTTTTGTA 57.792 33.333 0.00 0.00 0.00 2.41
598 599 7.716998 ACAAAGATGATCACTCTACTGTTTTGT 59.283 33.333 0.00 6.27 0.00 2.83
599 600 8.013947 CACAAAGATGATCACTCTACTGTTTTG 58.986 37.037 0.00 5.72 0.00 2.44
600 601 7.716998 ACACAAAGATGATCACTCTACTGTTTT 59.283 33.333 0.00 0.00 0.00 2.43
601 602 7.172190 CACACAAAGATGATCACTCTACTGTTT 59.828 37.037 0.00 1.55 0.00 2.83
602 603 6.648310 CACACAAAGATGATCACTCTACTGTT 59.352 38.462 0.00 0.00 0.00 3.16
603 604 6.015095 TCACACAAAGATGATCACTCTACTGT 60.015 38.462 0.00 7.14 0.00 3.55
604 605 6.393171 TCACACAAAGATGATCACTCTACTG 58.607 40.000 0.00 6.59 0.00 2.74
605 606 6.210385 ACTCACACAAAGATGATCACTCTACT 59.790 38.462 0.00 0.00 0.00 2.57
606 607 6.309980 CACTCACACAAAGATGATCACTCTAC 59.690 42.308 0.00 0.00 0.00 2.59
607 608 6.209391 TCACTCACACAAAGATGATCACTCTA 59.791 38.462 0.00 0.00 0.00 2.43
608 609 5.011431 TCACTCACACAAAGATGATCACTCT 59.989 40.000 0.00 0.00 0.00 3.24
609 610 5.233225 TCACTCACACAAAGATGATCACTC 58.767 41.667 0.00 0.00 0.00 3.51
610 611 5.219343 TCACTCACACAAAGATGATCACT 57.781 39.130 0.00 0.00 0.00 3.41
611 612 5.929697 TTCACTCACACAAAGATGATCAC 57.070 39.130 0.00 0.00 0.00 3.06
612 613 6.569035 GCAATTCACTCACACAAAGATGATCA 60.569 38.462 0.00 0.00 0.00 2.92
613 614 5.798934 GCAATTCACTCACACAAAGATGATC 59.201 40.000 0.00 0.00 0.00 2.92
614 615 5.242171 TGCAATTCACTCACACAAAGATGAT 59.758 36.000 0.00 0.00 0.00 2.45
615 616 4.579753 TGCAATTCACTCACACAAAGATGA 59.420 37.500 0.00 0.00 0.00 2.92
616 617 4.862350 TGCAATTCACTCACACAAAGATG 58.138 39.130 0.00 0.00 0.00 2.90
617 618 4.823442 TCTGCAATTCACTCACACAAAGAT 59.177 37.500 0.00 0.00 0.00 2.40
618 619 4.198530 TCTGCAATTCACTCACACAAAGA 58.801 39.130 0.00 0.00 0.00 2.52
619 620 4.556942 TCTGCAATTCACTCACACAAAG 57.443 40.909 0.00 0.00 0.00 2.77
620 621 4.979943 TTCTGCAATTCACTCACACAAA 57.020 36.364 0.00 0.00 0.00 2.83
621 622 4.979943 TTTCTGCAATTCACTCACACAA 57.020 36.364 0.00 0.00 0.00 3.33
622 623 4.439974 GGTTTTCTGCAATTCACTCACACA 60.440 41.667 0.00 0.00 0.00 3.72
625 626 4.044426 GTGGTTTTCTGCAATTCACTCAC 58.956 43.478 0.00 0.00 0.00 3.51
891 893 2.099405 GAAGAGGAGAGAGTGTGAGGG 58.901 57.143 0.00 0.00 0.00 4.30
910 912 2.043852 GTGAGGAGAGGGCGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
967 969 2.640989 CAGAACGACGGTCGGTGA 59.359 61.111 31.19 0.00 41.51 4.02
969 971 3.292936 AGCAGAACGACGGTCGGT 61.293 61.111 31.19 27.48 45.79 4.69
1215 1285 4.202000 ACAAAACATTCACATCTGCGTCAA 60.202 37.500 0.00 0.00 0.00 3.18
1766 2133 6.383436 TCTGGCCATTCAAAATCAATCCATTA 59.617 34.615 5.51 0.00 0.00 1.90
2035 2420 2.924290 GCCAACTACAGTTTCTAGCTCG 59.076 50.000 0.00 0.00 35.83 5.03
2206 2600 4.217118 AGCTCAACAATCTTCACATCAACC 59.783 41.667 0.00 0.00 0.00 3.77
2235 2629 2.488347 GCCTTCAAGTTCCCCACTACAA 60.488 50.000 0.00 0.00 32.94 2.41
2477 2912 3.898123 GCACCCTACTCATCTAAGATGGA 59.102 47.826 0.00 0.00 0.00 3.41
2759 3195 4.386867 TCTACTAAGCACATACACCAGC 57.613 45.455 0.00 0.00 0.00 4.85
2804 3240 4.989279 AAAAGTGCACTCACATTCAACT 57.011 36.364 21.95 0.00 45.49 3.16
3111 5798 6.045459 TGTTATATGATATGAGGCTTGGGGTT 59.955 38.462 0.00 0.00 0.00 4.11
3422 6762 0.250338 GACAGAGAAAGCAACCCGGT 60.250 55.000 0.00 0.00 0.00 5.28
3424 6764 1.532868 CAAGACAGAGAAAGCAACCCG 59.467 52.381 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.