Multiple sequence alignment - TraesCS3B01G338300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G338300 | chr3B | 100.000 | 3495 | 0 | 0 | 1 | 3495 | 544827009 | 544830503 | 0.000000e+00 | 6455.0 |
1 | TraesCS3B01G338300 | chr3B | 94.237 | 2898 | 116 | 31 | 624 | 3474 | 31137447 | 31140340 | 0.000000e+00 | 4379.0 |
2 | TraesCS3B01G338300 | chr3B | 96.989 | 631 | 11 | 4 | 1 | 631 | 544926964 | 544927586 | 0.000000e+00 | 1053.0 |
3 | TraesCS3B01G338300 | chr3B | 95.238 | 42 | 1 | 1 | 465 | 506 | 351291393 | 351291433 | 8.100000e-07 | 65.8 |
4 | TraesCS3B01G338300 | chr4B | 97.588 | 1700 | 38 | 3 | 1362 | 3059 | 634465688 | 634467386 | 0.000000e+00 | 2909.0 |
5 | TraesCS3B01G338300 | chr4B | 96.019 | 1683 | 35 | 18 | 1362 | 3042 | 634962891 | 634961239 | 0.000000e+00 | 2708.0 |
6 | TraesCS3B01G338300 | chr4B | 95.618 | 1643 | 53 | 2 | 628 | 2252 | 610532037 | 610533678 | 0.000000e+00 | 2617.0 |
7 | TraesCS3B01G338300 | chr4B | 97.128 | 766 | 21 | 1 | 629 | 1393 | 634464853 | 634465618 | 0.000000e+00 | 1291.0 |
8 | TraesCS3B01G338300 | chr4B | 96.867 | 766 | 24 | 0 | 628 | 1393 | 634963725 | 634962960 | 0.000000e+00 | 1282.0 |
9 | TraesCS3B01G338300 | chr4B | 93.083 | 665 | 43 | 3 | 2833 | 3495 | 634467738 | 634468401 | 0.000000e+00 | 970.0 |
10 | TraesCS3B01G338300 | chr4B | 93.584 | 639 | 31 | 3 | 2859 | 3495 | 634960912 | 634960282 | 0.000000e+00 | 944.0 |
11 | TraesCS3B01G338300 | chr2B | 95.461 | 1454 | 62 | 3 | 1649 | 3101 | 760246412 | 760244962 | 0.000000e+00 | 2316.0 |
12 | TraesCS3B01G338300 | chr2B | 95.093 | 1019 | 48 | 2 | 628 | 1644 | 760247471 | 760246453 | 0.000000e+00 | 1604.0 |
13 | TraesCS3B01G338300 | chr2B | 93.478 | 598 | 22 | 3 | 2912 | 3493 | 760244623 | 760244027 | 0.000000e+00 | 872.0 |
14 | TraesCS3B01G338300 | chr2B | 95.376 | 173 | 7 | 1 | 2960 | 3131 | 760244623 | 760244451 | 1.240000e-69 | 274.0 |
15 | TraesCS3B01G338300 | chr1D | 92.772 | 1425 | 77 | 10 | 1708 | 3131 | 386435771 | 386437170 | 0.000000e+00 | 2037.0 |
16 | TraesCS3B01G338300 | chr1D | 93.058 | 1354 | 67 | 10 | 1708 | 3060 | 491850091 | 491848764 | 0.000000e+00 | 1954.0 |
17 | TraesCS3B01G338300 | chr1D | 95.070 | 1136 | 50 | 5 | 1649 | 2783 | 416512932 | 416514062 | 0.000000e+00 | 1783.0 |
18 | TraesCS3B01G338300 | chr1D | 93.386 | 1013 | 63 | 3 | 628 | 1639 | 491851252 | 491850243 | 0.000000e+00 | 1496.0 |
19 | TraesCS3B01G338300 | chr1D | 89.967 | 299 | 27 | 3 | 2829 | 3125 | 386436915 | 386437212 | 1.970000e-102 | 383.0 |
20 | TraesCS3B01G338300 | chr1D | 100.000 | 41 | 0 | 0 | 3455 | 3495 | 416519354 | 416519394 | 3.740000e-10 | 76.8 |
21 | TraesCS3B01G338300 | chr5D | 95.511 | 1136 | 45 | 5 | 1649 | 2783 | 292686685 | 292687815 | 0.000000e+00 | 1810.0 |
22 | TraesCS3B01G338300 | chr5D | 84.492 | 561 | 61 | 17 | 2957 | 3495 | 292688817 | 292689373 | 6.640000e-147 | 531.0 |
23 | TraesCS3B01G338300 | chrUn | 95.335 | 1136 | 46 | 6 | 1649 | 2783 | 10230138 | 10229009 | 0.000000e+00 | 1797.0 |
24 | TraesCS3B01G338300 | chrUn | 90.179 | 336 | 13 | 3 | 3127 | 3449 | 10214823 | 10214495 | 1.500000e-113 | 420.0 |
25 | TraesCS3B01G338300 | chrUn | 100.000 | 41 | 0 | 0 | 3455 | 3495 | 10214435 | 10214395 | 3.740000e-10 | 76.8 |
26 | TraesCS3B01G338300 | chr6B | 95.678 | 1018 | 39 | 3 | 628 | 1644 | 468286352 | 468285339 | 0.000000e+00 | 1631.0 |
27 | TraesCS3B01G338300 | chr6B | 93.767 | 369 | 11 | 3 | 3127 | 3495 | 468282650 | 468282294 | 8.530000e-151 | 544.0 |
28 | TraesCS3B01G338300 | chr4A | 94.897 | 1019 | 38 | 5 | 627 | 1644 | 722383684 | 722382679 | 0.000000e+00 | 1581.0 |
29 | TraesCS3B01G338300 | chr5B | 87.430 | 1074 | 121 | 10 | 624 | 1696 | 186149884 | 186150944 | 0.000000e+00 | 1223.0 |
30 | TraesCS3B01G338300 | chr3D | 93.699 | 492 | 23 | 5 | 141 | 631 | 418442565 | 418443049 | 0.000000e+00 | 730.0 |
31 | TraesCS3B01G338300 | chr3D | 92.809 | 445 | 27 | 2 | 23 | 463 | 418559896 | 418560339 | 1.060000e-179 | 640.0 |
32 | TraesCS3B01G338300 | chr3D | 94.167 | 120 | 6 | 1 | 512 | 631 | 418560346 | 418560464 | 7.710000e-42 | 182.0 |
33 | TraesCS3B01G338300 | chr2D | 83.845 | 619 | 69 | 12 | 2861 | 3449 | 81286203 | 81286820 | 8.470000e-156 | 560.0 |
34 | TraesCS3B01G338300 | chr2D | 97.806 | 319 | 7 | 0 | 3177 | 3495 | 622905470 | 622905788 | 5.100000e-153 | 551.0 |
35 | TraesCS3B01G338300 | chr2D | 96.000 | 300 | 12 | 0 | 628 | 927 | 622905169 | 622905468 | 4.050000e-134 | 488.0 |
36 | TraesCS3B01G338300 | chr6A | 81.887 | 657 | 93 | 17 | 2861 | 3495 | 592859729 | 592860381 | 6.640000e-147 | 531.0 |
37 | TraesCS3B01G338300 | chr6A | 91.205 | 307 | 14 | 5 | 3156 | 3449 | 561581910 | 561581604 | 4.200000e-109 | 405.0 |
38 | TraesCS3B01G338300 | chr6A | 91.205 | 307 | 14 | 5 | 3156 | 3449 | 561595077 | 561594771 | 4.200000e-109 | 405.0 |
39 | TraesCS3B01G338300 | chr7A | 91.531 | 307 | 13 | 3 | 3156 | 3449 | 488482432 | 488482126 | 9.030000e-111 | 411.0 |
40 | TraesCS3B01G338300 | chr1A | 90.879 | 307 | 15 | 5 | 3156 | 3449 | 565641091 | 565640785 | 1.950000e-107 | 399.0 |
41 | TraesCS3B01G338300 | chr3A | 95.536 | 224 | 10 | 0 | 23 | 246 | 532629977 | 532629754 | 3.320000e-95 | 359.0 |
42 | TraesCS3B01G338300 | chr3A | 91.518 | 224 | 15 | 1 | 244 | 463 | 532629407 | 532629184 | 4.380000e-79 | 305.0 |
43 | TraesCS3B01G338300 | chr3A | 95.833 | 120 | 4 | 1 | 512 | 631 | 532629178 | 532629060 | 3.560000e-45 | 193.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G338300 | chr3B | 544827009 | 544830503 | 3494 | False | 6455.000000 | 6455 | 100.000000 | 1 | 3495 | 1 | chr3B.!!$F3 | 3494 |
1 | TraesCS3B01G338300 | chr3B | 31137447 | 31140340 | 2893 | False | 4379.000000 | 4379 | 94.237000 | 624 | 3474 | 1 | chr3B.!!$F1 | 2850 |
2 | TraesCS3B01G338300 | chr3B | 544926964 | 544927586 | 622 | False | 1053.000000 | 1053 | 96.989000 | 1 | 631 | 1 | chr3B.!!$F4 | 630 |
3 | TraesCS3B01G338300 | chr4B | 610532037 | 610533678 | 1641 | False | 2617.000000 | 2617 | 95.618000 | 628 | 2252 | 1 | chr4B.!!$F1 | 1624 |
4 | TraesCS3B01G338300 | chr4B | 634464853 | 634468401 | 3548 | False | 1723.333333 | 2909 | 95.933000 | 629 | 3495 | 3 | chr4B.!!$F2 | 2866 |
5 | TraesCS3B01G338300 | chr4B | 634960282 | 634963725 | 3443 | True | 1644.666667 | 2708 | 95.490000 | 628 | 3495 | 3 | chr4B.!!$R1 | 2867 |
6 | TraesCS3B01G338300 | chr2B | 760244027 | 760247471 | 3444 | True | 1266.500000 | 2316 | 94.852000 | 628 | 3493 | 4 | chr2B.!!$R1 | 2865 |
7 | TraesCS3B01G338300 | chr1D | 416512932 | 416514062 | 1130 | False | 1783.000000 | 1783 | 95.070000 | 1649 | 2783 | 1 | chr1D.!!$F1 | 1134 |
8 | TraesCS3B01G338300 | chr1D | 491848764 | 491851252 | 2488 | True | 1725.000000 | 1954 | 93.222000 | 628 | 3060 | 2 | chr1D.!!$R1 | 2432 |
9 | TraesCS3B01G338300 | chr1D | 386435771 | 386437212 | 1441 | False | 1210.000000 | 2037 | 91.369500 | 1708 | 3131 | 2 | chr1D.!!$F3 | 1423 |
10 | TraesCS3B01G338300 | chr5D | 292686685 | 292689373 | 2688 | False | 1170.500000 | 1810 | 90.001500 | 1649 | 3495 | 2 | chr5D.!!$F1 | 1846 |
11 | TraesCS3B01G338300 | chrUn | 10229009 | 10230138 | 1129 | True | 1797.000000 | 1797 | 95.335000 | 1649 | 2783 | 1 | chrUn.!!$R1 | 1134 |
12 | TraesCS3B01G338300 | chr6B | 468282294 | 468286352 | 4058 | True | 1087.500000 | 1631 | 94.722500 | 628 | 3495 | 2 | chr6B.!!$R1 | 2867 |
13 | TraesCS3B01G338300 | chr4A | 722382679 | 722383684 | 1005 | True | 1581.000000 | 1581 | 94.897000 | 627 | 1644 | 1 | chr4A.!!$R1 | 1017 |
14 | TraesCS3B01G338300 | chr5B | 186149884 | 186150944 | 1060 | False | 1223.000000 | 1223 | 87.430000 | 624 | 1696 | 1 | chr5B.!!$F1 | 1072 |
15 | TraesCS3B01G338300 | chr3D | 418559896 | 418560464 | 568 | False | 411.000000 | 640 | 93.488000 | 23 | 631 | 2 | chr3D.!!$F2 | 608 |
16 | TraesCS3B01G338300 | chr2D | 81286203 | 81286820 | 617 | False | 560.000000 | 560 | 83.845000 | 2861 | 3449 | 1 | chr2D.!!$F1 | 588 |
17 | TraesCS3B01G338300 | chr2D | 622905169 | 622905788 | 619 | False | 519.500000 | 551 | 96.903000 | 628 | 3495 | 2 | chr2D.!!$F2 | 2867 |
18 | TraesCS3B01G338300 | chr6A | 592859729 | 592860381 | 652 | False | 531.000000 | 531 | 81.887000 | 2861 | 3495 | 1 | chr6A.!!$F1 | 634 |
19 | TraesCS3B01G338300 | chr3A | 532629060 | 532629977 | 917 | True | 285.666667 | 359 | 94.295667 | 23 | 631 | 3 | chr3A.!!$R1 | 608 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
369 | 370 | 0.026803 | GCAACTTTCCGCTAGCGATG | 59.973 | 55.0 | 37.39 | 21.93 | 42.83 | 3.84 | F |
563 | 564 | 0.039256 | CACAGTTTTGGCCGTCATGG | 60.039 | 55.0 | 0.00 | 0.00 | 42.50 | 3.66 | F |
566 | 567 | 0.178975 | AGTTTTGGCCGTCATGGGAA | 60.179 | 50.0 | 0.00 | 0.00 | 38.63 | 3.97 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2235 | 2629 | 2.488347 | GCCTTCAAGTTCCCCACTACAA | 60.488 | 50.000 | 0.0 | 0.0 | 32.94 | 2.41 | R |
2477 | 2912 | 3.898123 | GCACCCTACTCATCTAAGATGGA | 59.102 | 47.826 | 0.0 | 0.0 | 0.00 | 3.41 | R |
2759 | 3195 | 4.386867 | TCTACTAAGCACATACACCAGC | 57.613 | 45.455 | 0.0 | 0.0 | 0.00 | 4.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
157 | 158 | 7.483307 | TGGCAATTAGCTGATAATTCAAGAAC | 58.517 | 34.615 | 7.87 | 0.00 | 41.25 | 3.01 |
252 | 253 | 4.738243 | GCATGCCATGACATCTAATTTGCA | 60.738 | 41.667 | 9.33 | 0.00 | 0.00 | 4.08 |
253 | 254 | 4.374843 | TGCCATGACATCTAATTTGCAC | 57.625 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
254 | 255 | 3.762823 | TGCCATGACATCTAATTTGCACA | 59.237 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
255 | 256 | 4.403113 | TGCCATGACATCTAATTTGCACAT | 59.597 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
256 | 257 | 5.105269 | TGCCATGACATCTAATTTGCACATT | 60.105 | 36.000 | 3.19 | 3.19 | 0.00 | 2.71 |
257 | 258 | 5.813672 | GCCATGACATCTAATTTGCACATTT | 59.186 | 36.000 | 2.94 | 0.00 | 0.00 | 2.32 |
258 | 259 | 6.314400 | GCCATGACATCTAATTTGCACATTTT | 59.686 | 34.615 | 2.94 | 0.00 | 0.00 | 1.82 |
259 | 260 | 7.148373 | GCCATGACATCTAATTTGCACATTTTT | 60.148 | 33.333 | 2.94 | 0.00 | 0.00 | 1.94 |
281 | 282 | 8.592105 | TTTTTCTGTTTCTGCATTGGATAAAG | 57.408 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
282 | 283 | 7.523293 | TTTCTGTTTCTGCATTGGATAAAGA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
283 | 284 | 7.523293 | TTCTGTTTCTGCATTGGATAAAGAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
284 | 285 | 7.523293 | TCTGTTTCTGCATTGGATAAAGAAA | 57.477 | 32.000 | 0.00 | 0.00 | 35.17 | 2.52 |
285 | 286 | 7.596494 | TCTGTTTCTGCATTGGATAAAGAAAG | 58.404 | 34.615 | 0.00 | 0.00 | 37.49 | 2.62 |
286 | 287 | 7.231317 | TCTGTTTCTGCATTGGATAAAGAAAGT | 59.769 | 33.333 | 0.00 | 0.00 | 37.49 | 2.66 |
287 | 288 | 7.370383 | TGTTTCTGCATTGGATAAAGAAAGTC | 58.630 | 34.615 | 0.00 | 0.00 | 37.49 | 3.01 |
288 | 289 | 7.014134 | TGTTTCTGCATTGGATAAAGAAAGTCA | 59.986 | 33.333 | 0.00 | 0.00 | 37.49 | 3.41 |
289 | 290 | 6.748333 | TCTGCATTGGATAAAGAAAGTCAG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
290 | 291 | 6.240894 | TCTGCATTGGATAAAGAAAGTCAGT | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
291 | 292 | 6.372659 | TCTGCATTGGATAAAGAAAGTCAGTC | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
292 | 293 | 6.240894 | TGCATTGGATAAAGAAAGTCAGTCT | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
293 | 294 | 6.716628 | TGCATTGGATAAAGAAAGTCAGTCTT | 59.283 | 34.615 | 0.00 | 0.00 | 36.90 | 3.01 |
294 | 295 | 7.882791 | TGCATTGGATAAAGAAAGTCAGTCTTA | 59.117 | 33.333 | 0.00 | 0.00 | 34.19 | 2.10 |
295 | 296 | 8.897752 | GCATTGGATAAAGAAAGTCAGTCTTAT | 58.102 | 33.333 | 0.00 | 0.00 | 34.19 | 1.73 |
298 | 299 | 9.877178 | TTGGATAAAGAAAGTCAGTCTTATCTC | 57.123 | 33.333 | 0.00 | 0.00 | 34.19 | 2.75 |
299 | 300 | 9.261035 | TGGATAAAGAAAGTCAGTCTTATCTCT | 57.739 | 33.333 | 0.00 | 0.00 | 34.19 | 3.10 |
306 | 307 | 9.474313 | AGAAAGTCAGTCTTATCTCTATTGACT | 57.526 | 33.333 | 0.00 | 0.00 | 43.89 | 3.41 |
313 | 314 | 8.995027 | AGTCTTATCTCTATTGACTGATGACT | 57.005 | 34.615 | 0.00 | 0.00 | 36.74 | 3.41 |
314 | 315 | 9.420118 | AGTCTTATCTCTATTGACTGATGACTT | 57.580 | 33.333 | 0.00 | 0.00 | 36.74 | 3.01 |
315 | 316 | 9.462174 | GTCTTATCTCTATTGACTGATGACTTG | 57.538 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
316 | 317 | 8.637099 | TCTTATCTCTATTGACTGATGACTTGG | 58.363 | 37.037 | 0.00 | 0.00 | 0.00 | 3.61 |
317 | 318 | 8.539117 | TTATCTCTATTGACTGATGACTTGGA | 57.461 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
318 | 319 | 6.214191 | TCTCTATTGACTGATGACTTGGAC | 57.786 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
319 | 320 | 5.954752 | TCTCTATTGACTGATGACTTGGACT | 59.045 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
320 | 321 | 7.119387 | TCTCTATTGACTGATGACTTGGACTA | 58.881 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
321 | 322 | 7.615757 | TCTCTATTGACTGATGACTTGGACTAA | 59.384 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
322 | 323 | 7.548097 | TCTATTGACTGATGACTTGGACTAAC | 58.452 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
323 | 324 | 5.808366 | TTGACTGATGACTTGGACTAACT | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
324 | 325 | 6.911250 | TTGACTGATGACTTGGACTAACTA | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
325 | 326 | 6.516739 | TGACTGATGACTTGGACTAACTAG | 57.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
326 | 327 | 6.010850 | TGACTGATGACTTGGACTAACTAGT | 58.989 | 40.000 | 0.00 | 0.00 | 39.71 | 2.57 |
341 | 342 | 7.228314 | ACTAACTAGTCACTAATTGCACTGA | 57.772 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
342 | 343 | 7.091443 | ACTAACTAGTCACTAATTGCACTGAC | 58.909 | 38.462 | 0.00 | 0.00 | 34.42 | 3.51 |
343 | 344 | 5.468540 | ACTAGTCACTAATTGCACTGACA | 57.531 | 39.130 | 0.00 | 0.00 | 36.31 | 3.58 |
344 | 345 | 5.473931 | ACTAGTCACTAATTGCACTGACAG | 58.526 | 41.667 | 0.00 | 0.00 | 36.31 | 3.51 |
345 | 346 | 4.342862 | AGTCACTAATTGCACTGACAGT | 57.657 | 40.909 | 1.07 | 1.07 | 36.31 | 3.55 |
346 | 347 | 4.310769 | AGTCACTAATTGCACTGACAGTC | 58.689 | 43.478 | 4.74 | 1.74 | 36.31 | 3.51 |
347 | 348 | 3.121944 | GTCACTAATTGCACTGACAGTCG | 59.878 | 47.826 | 4.74 | 3.01 | 34.38 | 4.18 |
348 | 349 | 2.413112 | CACTAATTGCACTGACAGTCGG | 59.587 | 50.000 | 4.74 | 7.94 | 0.00 | 4.79 |
349 | 350 | 2.037251 | ACTAATTGCACTGACAGTCGGT | 59.963 | 45.455 | 9.45 | 9.45 | 36.16 | 4.69 |
353 | 354 | 4.436515 | CACTGACAGTCGGTGCAA | 57.563 | 55.556 | 26.22 | 0.00 | 45.52 | 4.08 |
354 | 355 | 1.934463 | CACTGACAGTCGGTGCAAC | 59.066 | 57.895 | 26.22 | 0.00 | 45.52 | 4.17 |
355 | 356 | 0.530650 | CACTGACAGTCGGTGCAACT | 60.531 | 55.000 | 26.22 | 0.00 | 45.52 | 3.16 |
356 | 357 | 0.178068 | ACTGACAGTCGGTGCAACTT | 59.822 | 50.000 | 14.67 | 0.00 | 34.08 | 2.66 |
357 | 358 | 1.299541 | CTGACAGTCGGTGCAACTTT | 58.700 | 50.000 | 0.00 | 0.00 | 36.74 | 2.66 |
358 | 359 | 1.261619 | CTGACAGTCGGTGCAACTTTC | 59.738 | 52.381 | 0.00 | 0.00 | 36.74 | 2.62 |
359 | 360 | 0.586802 | GACAGTCGGTGCAACTTTCC | 59.413 | 55.000 | 0.00 | 0.00 | 36.74 | 3.13 |
360 | 361 | 1.157870 | ACAGTCGGTGCAACTTTCCG | 61.158 | 55.000 | 6.36 | 6.36 | 44.76 | 4.30 |
361 | 362 | 2.251371 | GTCGGTGCAACTTTCCGC | 59.749 | 61.111 | 7.77 | 0.50 | 43.35 | 5.54 |
362 | 363 | 2.110213 | TCGGTGCAACTTTCCGCT | 59.890 | 55.556 | 7.77 | 0.00 | 43.35 | 5.52 |
363 | 364 | 0.947180 | GTCGGTGCAACTTTCCGCTA | 60.947 | 55.000 | 7.77 | 0.00 | 43.35 | 4.26 |
364 | 365 | 0.669318 | TCGGTGCAACTTTCCGCTAG | 60.669 | 55.000 | 7.77 | 0.00 | 43.35 | 3.42 |
365 | 366 | 1.502190 | GGTGCAACTTTCCGCTAGC | 59.498 | 57.895 | 4.06 | 4.06 | 36.74 | 3.42 |
366 | 367 | 1.132640 | GTGCAACTTTCCGCTAGCG | 59.867 | 57.895 | 29.93 | 29.93 | 39.44 | 4.26 |
367 | 368 | 1.005512 | TGCAACTTTCCGCTAGCGA | 60.006 | 52.632 | 37.39 | 20.61 | 42.83 | 4.93 |
368 | 369 | 0.391130 | TGCAACTTTCCGCTAGCGAT | 60.391 | 50.000 | 37.39 | 14.57 | 42.83 | 4.58 |
369 | 370 | 0.026803 | GCAACTTTCCGCTAGCGATG | 59.973 | 55.000 | 37.39 | 21.93 | 42.83 | 3.84 |
370 | 371 | 1.359848 | CAACTTTCCGCTAGCGATGT | 58.640 | 50.000 | 37.39 | 24.29 | 42.83 | 3.06 |
371 | 372 | 1.324736 | CAACTTTCCGCTAGCGATGTC | 59.675 | 52.381 | 37.39 | 0.00 | 42.83 | 3.06 |
372 | 373 | 0.530744 | ACTTTCCGCTAGCGATGTCA | 59.469 | 50.000 | 37.39 | 15.28 | 42.83 | 3.58 |
373 | 374 | 1.067142 | ACTTTCCGCTAGCGATGTCAA | 60.067 | 47.619 | 37.39 | 19.43 | 42.83 | 3.18 |
374 | 375 | 1.999735 | CTTTCCGCTAGCGATGTCAAA | 59.000 | 47.619 | 37.39 | 22.88 | 42.83 | 2.69 |
375 | 376 | 2.309528 | TTCCGCTAGCGATGTCAAAT | 57.690 | 45.000 | 37.39 | 0.00 | 42.83 | 2.32 |
376 | 377 | 1.852942 | TCCGCTAGCGATGTCAAATC | 58.147 | 50.000 | 37.39 | 0.00 | 42.83 | 2.17 |
377 | 378 | 0.861837 | CCGCTAGCGATGTCAAATCC | 59.138 | 55.000 | 37.39 | 0.00 | 42.83 | 3.01 |
378 | 379 | 1.570813 | CGCTAGCGATGTCAAATCCA | 58.429 | 50.000 | 32.98 | 0.00 | 42.83 | 3.41 |
379 | 380 | 1.933181 | CGCTAGCGATGTCAAATCCAA | 59.067 | 47.619 | 32.98 | 0.00 | 42.83 | 3.53 |
380 | 381 | 2.033407 | CGCTAGCGATGTCAAATCCAAG | 60.033 | 50.000 | 32.98 | 0.00 | 42.83 | 3.61 |
381 | 382 | 3.198068 | GCTAGCGATGTCAAATCCAAGA | 58.802 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
382 | 383 | 3.623060 | GCTAGCGATGTCAAATCCAAGAA | 59.377 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
383 | 384 | 4.494855 | GCTAGCGATGTCAAATCCAAGAAC | 60.495 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
384 | 385 | 3.679389 | AGCGATGTCAAATCCAAGAACT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
385 | 386 | 4.074970 | AGCGATGTCAAATCCAAGAACTT | 58.925 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
386 | 387 | 4.083110 | AGCGATGTCAAATCCAAGAACTTG | 60.083 | 41.667 | 7.49 | 7.49 | 40.13 | 3.16 |
399 | 400 | 5.997732 | CAAGAACTTGGCAATTACGAATG | 57.002 | 39.130 | 0.00 | 0.00 | 36.95 | 2.67 |
400 | 401 | 5.460646 | CAAGAACTTGGCAATTACGAATGT | 58.539 | 37.500 | 0.00 | 0.00 | 36.95 | 2.71 |
401 | 402 | 5.296813 | AGAACTTGGCAATTACGAATGTC | 57.703 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
402 | 403 | 4.759693 | AGAACTTGGCAATTACGAATGTCA | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
403 | 404 | 4.419522 | ACTTGGCAATTACGAATGTCAC | 57.580 | 40.909 | 0.00 | 0.00 | 29.48 | 3.67 |
404 | 405 | 3.818210 | ACTTGGCAATTACGAATGTCACA | 59.182 | 39.130 | 0.00 | 0.00 | 29.48 | 3.58 |
405 | 406 | 3.822594 | TGGCAATTACGAATGTCACAC | 57.177 | 42.857 | 0.00 | 0.00 | 0.00 | 3.82 |
406 | 407 | 3.142174 | TGGCAATTACGAATGTCACACA | 58.858 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
407 | 408 | 3.058570 | TGGCAATTACGAATGTCACACAC | 60.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
408 | 409 | 3.058570 | GGCAATTACGAATGTCACACACA | 60.059 | 43.478 | 0.00 | 0.00 | 40.18 | 3.72 |
409 | 410 | 4.532276 | GCAATTACGAATGTCACACACAA | 58.468 | 39.130 | 0.00 | 0.00 | 38.97 | 3.33 |
410 | 411 | 5.153513 | GCAATTACGAATGTCACACACAAT | 58.846 | 37.500 | 0.00 | 0.00 | 38.97 | 2.71 |
411 | 412 | 5.059587 | GCAATTACGAATGTCACACACAATG | 59.940 | 40.000 | 0.00 | 0.00 | 38.97 | 2.82 |
412 | 413 | 5.940192 | ATTACGAATGTCACACACAATGT | 57.060 | 34.783 | 0.00 | 0.00 | 44.81 | 2.71 |
413 | 414 | 5.743026 | TTACGAATGTCACACACAATGTT | 57.257 | 34.783 | 0.00 | 0.00 | 40.64 | 2.71 |
414 | 415 | 4.630894 | ACGAATGTCACACACAATGTTT | 57.369 | 36.364 | 0.00 | 0.00 | 40.64 | 2.83 |
415 | 416 | 4.992688 | ACGAATGTCACACACAATGTTTT | 58.007 | 34.783 | 0.00 | 0.00 | 40.64 | 2.43 |
416 | 417 | 5.034152 | ACGAATGTCACACACAATGTTTTC | 58.966 | 37.500 | 0.00 | 0.00 | 40.64 | 2.29 |
417 | 418 | 5.163663 | ACGAATGTCACACACAATGTTTTCT | 60.164 | 36.000 | 0.00 | 0.00 | 40.64 | 2.52 |
418 | 419 | 5.396362 | CGAATGTCACACACAATGTTTTCTC | 59.604 | 40.000 | 0.00 | 0.00 | 40.64 | 2.87 |
419 | 420 | 5.833406 | ATGTCACACACAATGTTTTCTCA | 57.167 | 34.783 | 0.00 | 0.00 | 40.64 | 3.27 |
420 | 421 | 5.635417 | TGTCACACACAATGTTTTCTCAA | 57.365 | 34.783 | 0.00 | 0.00 | 40.64 | 3.02 |
421 | 422 | 6.018589 | TGTCACACACAATGTTTTCTCAAA | 57.981 | 33.333 | 0.00 | 0.00 | 40.64 | 2.69 |
422 | 423 | 6.092092 | TGTCACACACAATGTTTTCTCAAAG | 58.908 | 36.000 | 0.00 | 0.00 | 40.64 | 2.77 |
423 | 424 | 6.092748 | GTCACACACAATGTTTTCTCAAAGT | 58.907 | 36.000 | 0.00 | 0.00 | 40.64 | 2.66 |
424 | 425 | 6.586082 | GTCACACACAATGTTTTCTCAAAGTT | 59.414 | 34.615 | 0.00 | 0.00 | 40.64 | 2.66 |
425 | 426 | 7.753132 | GTCACACACAATGTTTTCTCAAAGTTA | 59.247 | 33.333 | 0.00 | 0.00 | 40.64 | 2.24 |
426 | 427 | 8.300286 | TCACACACAATGTTTTCTCAAAGTTAA | 58.700 | 29.630 | 0.00 | 0.00 | 40.64 | 2.01 |
427 | 428 | 9.086336 | CACACACAATGTTTTCTCAAAGTTAAT | 57.914 | 29.630 | 0.00 | 0.00 | 40.64 | 1.40 |
428 | 429 | 9.651913 | ACACACAATGTTTTCTCAAAGTTAATT | 57.348 | 25.926 | 0.00 | 0.00 | 38.98 | 1.40 |
445 | 446 | 6.246163 | AGTTAATTTAACTCTGGGTTCAGGG | 58.754 | 40.000 | 14.66 | 0.00 | 45.38 | 4.45 |
446 | 447 | 6.045106 | AGTTAATTTAACTCTGGGTTCAGGGA | 59.955 | 38.462 | 14.66 | 0.00 | 45.38 | 4.20 |
447 | 448 | 5.333566 | AATTTAACTCTGGGTTCAGGGAA | 57.666 | 39.130 | 0.00 | 0.00 | 44.15 | 3.97 |
448 | 449 | 4.367039 | TTTAACTCTGGGTTCAGGGAAG | 57.633 | 45.455 | 0.00 | 0.00 | 44.15 | 3.46 |
449 | 450 | 2.118403 | AACTCTGGGTTCAGGGAAGA | 57.882 | 50.000 | 0.00 | 0.00 | 44.15 | 2.87 |
450 | 451 | 2.118403 | ACTCTGGGTTCAGGGAAGAA | 57.882 | 50.000 | 0.00 | 0.00 | 44.15 | 2.52 |
451 | 452 | 2.418669 | ACTCTGGGTTCAGGGAAGAAA | 58.581 | 47.619 | 0.00 | 0.00 | 44.15 | 2.52 |
452 | 453 | 2.106684 | ACTCTGGGTTCAGGGAAGAAAC | 59.893 | 50.000 | 0.00 | 0.00 | 44.15 | 2.78 |
453 | 454 | 2.106511 | CTCTGGGTTCAGGGAAGAAACA | 59.893 | 50.000 | 0.00 | 0.00 | 44.15 | 2.83 |
454 | 455 | 2.158667 | TCTGGGTTCAGGGAAGAAACAC | 60.159 | 50.000 | 0.00 | 0.00 | 41.23 | 3.32 |
455 | 456 | 1.566703 | TGGGTTCAGGGAAGAAACACA | 59.433 | 47.619 | 0.00 | 0.00 | 36.94 | 3.72 |
456 | 457 | 1.954382 | GGGTTCAGGGAAGAAACACAC | 59.046 | 52.381 | 0.00 | 0.00 | 36.94 | 3.82 |
457 | 458 | 2.422945 | GGGTTCAGGGAAGAAACACACT | 60.423 | 50.000 | 0.00 | 0.00 | 36.94 | 3.55 |
458 | 459 | 3.288092 | GGTTCAGGGAAGAAACACACTT | 58.712 | 45.455 | 0.00 | 0.00 | 35.31 | 3.16 |
459 | 460 | 3.066760 | GGTTCAGGGAAGAAACACACTTG | 59.933 | 47.826 | 0.00 | 0.00 | 35.31 | 3.16 |
460 | 461 | 2.297701 | TCAGGGAAGAAACACACTTGC | 58.702 | 47.619 | 0.00 | 0.00 | 35.52 | 4.01 |
462 | 463 | 1.692411 | GGGAAGAAACACACTTGCCT | 58.308 | 50.000 | 10.14 | 0.00 | 47.00 | 4.75 |
463 | 464 | 2.858745 | GGGAAGAAACACACTTGCCTA | 58.141 | 47.619 | 10.14 | 0.00 | 47.00 | 3.93 |
464 | 465 | 2.814336 | GGGAAGAAACACACTTGCCTAG | 59.186 | 50.000 | 10.14 | 0.00 | 47.00 | 3.02 |
465 | 466 | 2.226674 | GGAAGAAACACACTTGCCTAGC | 59.773 | 50.000 | 0.00 | 0.00 | 31.30 | 3.42 |
466 | 467 | 2.938956 | AGAAACACACTTGCCTAGCT | 57.061 | 45.000 | 0.00 | 0.00 | 0.00 | 3.32 |
467 | 468 | 3.214696 | AGAAACACACTTGCCTAGCTT | 57.785 | 42.857 | 0.00 | 0.00 | 0.00 | 3.74 |
468 | 469 | 3.142174 | AGAAACACACTTGCCTAGCTTC | 58.858 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
469 | 470 | 2.638480 | AACACACTTGCCTAGCTTCA | 57.362 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
470 | 471 | 2.638480 | ACACACTTGCCTAGCTTCAA | 57.362 | 45.000 | 0.00 | 0.00 | 0.00 | 2.69 |
471 | 472 | 3.146104 | ACACACTTGCCTAGCTTCAAT | 57.854 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
472 | 473 | 3.490348 | ACACACTTGCCTAGCTTCAATT | 58.510 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
473 | 474 | 3.503748 | ACACACTTGCCTAGCTTCAATTC | 59.496 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
474 | 475 | 2.744202 | ACACTTGCCTAGCTTCAATTCG | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
475 | 476 | 1.740025 | ACTTGCCTAGCTTCAATTCGC | 59.260 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
476 | 477 | 2.012673 | CTTGCCTAGCTTCAATTCGCT | 58.987 | 47.619 | 0.00 | 0.00 | 40.15 | 4.93 |
477 | 478 | 2.979814 | TGCCTAGCTTCAATTCGCTA | 57.020 | 45.000 | 0.00 | 0.00 | 37.68 | 4.26 |
478 | 479 | 3.260475 | TGCCTAGCTTCAATTCGCTAA | 57.740 | 42.857 | 0.00 | 0.00 | 38.18 | 3.09 |
479 | 480 | 3.605634 | TGCCTAGCTTCAATTCGCTAAA | 58.394 | 40.909 | 0.00 | 0.00 | 38.18 | 1.85 |
480 | 481 | 3.623060 | TGCCTAGCTTCAATTCGCTAAAG | 59.377 | 43.478 | 0.00 | 0.00 | 38.18 | 1.85 |
481 | 482 | 3.547014 | GCCTAGCTTCAATTCGCTAAAGC | 60.547 | 47.826 | 0.00 | 0.00 | 43.44 | 3.51 |
482 | 483 | 3.002759 | CCTAGCTTCAATTCGCTAAAGCC | 59.997 | 47.826 | 0.00 | 0.00 | 44.01 | 4.35 |
483 | 484 | 1.398390 | AGCTTCAATTCGCTAAAGCCG | 59.602 | 47.619 | 2.56 | 0.00 | 44.01 | 5.52 |
484 | 485 | 1.531883 | GCTTCAATTCGCTAAAGCCGG | 60.532 | 52.381 | 0.00 | 0.00 | 38.51 | 6.13 |
485 | 486 | 1.064060 | CTTCAATTCGCTAAAGCCGGG | 59.936 | 52.381 | 2.18 | 0.00 | 37.91 | 5.73 |
486 | 487 | 1.064134 | CAATTCGCTAAAGCCGGGC | 59.936 | 57.895 | 12.11 | 12.11 | 37.91 | 6.13 |
487 | 488 | 1.377987 | AATTCGCTAAAGCCGGGCA | 60.378 | 52.632 | 23.09 | 0.00 | 37.91 | 5.36 |
488 | 489 | 0.963355 | AATTCGCTAAAGCCGGGCAA | 60.963 | 50.000 | 23.09 | 4.85 | 37.91 | 4.52 |
489 | 490 | 1.376609 | ATTCGCTAAAGCCGGGCAAG | 61.377 | 55.000 | 23.09 | 15.88 | 37.91 | 4.01 |
490 | 491 | 4.179579 | CGCTAAAGCCGGGCAAGC | 62.180 | 66.667 | 23.09 | 23.23 | 37.91 | 4.01 |
491 | 492 | 4.179579 | GCTAAAGCCGGGCAAGCG | 62.180 | 66.667 | 23.09 | 7.88 | 34.64 | 4.68 |
492 | 493 | 2.746277 | CTAAAGCCGGGCAAGCGT | 60.746 | 61.111 | 23.09 | 3.50 | 34.64 | 5.07 |
493 | 494 | 2.744709 | TAAAGCCGGGCAAGCGTC | 60.745 | 61.111 | 23.09 | 0.00 | 34.64 | 5.19 |
494 | 495 | 3.248446 | TAAAGCCGGGCAAGCGTCT | 62.248 | 57.895 | 23.09 | 0.00 | 34.64 | 4.18 |
498 | 499 | 4.394712 | CCGGGCAAGCGTCTCCTT | 62.395 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
499 | 500 | 2.358737 | CGGGCAAGCGTCTCCTTT | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 3.11 |
500 | 501 | 2.391389 | CGGGCAAGCGTCTCCTTTC | 61.391 | 63.158 | 0.00 | 0.00 | 0.00 | 2.62 |
501 | 502 | 1.003233 | GGGCAAGCGTCTCCTTTCT | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
502 | 503 | 0.606673 | GGGCAAGCGTCTCCTTTCTT | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
503 | 504 | 1.338769 | GGGCAAGCGTCTCCTTTCTTA | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
504 | 505 | 2.423577 | GGCAAGCGTCTCCTTTCTTAA | 58.576 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
505 | 506 | 2.812011 | GGCAAGCGTCTCCTTTCTTAAA | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
506 | 507 | 3.252458 | GGCAAGCGTCTCCTTTCTTAAAA | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
507 | 508 | 4.467735 | GCAAGCGTCTCCTTTCTTAAAAG | 58.532 | 43.478 | 0.00 | 0.00 | 41.36 | 2.27 |
508 | 509 | 4.213482 | GCAAGCGTCTCCTTTCTTAAAAGA | 59.787 | 41.667 | 0.00 | 0.00 | 43.90 | 2.52 |
509 | 510 | 5.277828 | GCAAGCGTCTCCTTTCTTAAAAGAA | 60.278 | 40.000 | 1.00 | 1.00 | 43.90 | 2.52 |
524 | 525 | 8.990163 | TCTTAAAAGAAAGGTATTTGTCCTGT | 57.010 | 30.769 | 0.00 | 0.00 | 35.27 | 4.00 |
525 | 526 | 9.416284 | TCTTAAAAGAAAGGTATTTGTCCTGTT | 57.584 | 29.630 | 0.00 | 0.00 | 35.27 | 3.16 |
532 | 533 | 9.892130 | AGAAAGGTATTTGTCCTGTTAATAGAG | 57.108 | 33.333 | 0.00 | 0.00 | 35.27 | 2.43 |
533 | 534 | 9.886132 | GAAAGGTATTTGTCCTGTTAATAGAGA | 57.114 | 33.333 | 0.00 | 0.00 | 35.27 | 3.10 |
536 | 537 | 9.838339 | AGGTATTTGTCCTGTTAATAGAGAATG | 57.162 | 33.333 | 0.00 | 0.00 | 33.62 | 2.67 |
537 | 538 | 9.832445 | GGTATTTGTCCTGTTAATAGAGAATGA | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
540 | 541 | 8.737168 | TTTGTCCTGTTAATAGAGAATGATGG | 57.263 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
541 | 542 | 7.437713 | TGTCCTGTTAATAGAGAATGATGGT | 57.562 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
542 | 543 | 7.275183 | TGTCCTGTTAATAGAGAATGATGGTG | 58.725 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
543 | 544 | 6.708054 | GTCCTGTTAATAGAGAATGATGGTGG | 59.292 | 42.308 | 0.00 | 0.00 | 0.00 | 4.61 |
544 | 545 | 5.471456 | CCTGTTAATAGAGAATGATGGTGGC | 59.529 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
545 | 546 | 6.000246 | TGTTAATAGAGAATGATGGTGGCA | 58.000 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
546 | 547 | 5.822519 | TGTTAATAGAGAATGATGGTGGCAC | 59.177 | 40.000 | 9.70 | 9.70 | 0.00 | 5.01 |
547 | 548 | 4.508551 | AATAGAGAATGATGGTGGCACA | 57.491 | 40.909 | 20.82 | 6.09 | 0.00 | 4.57 |
548 | 549 | 2.414994 | AGAGAATGATGGTGGCACAG | 57.585 | 50.000 | 20.82 | 0.00 | 41.80 | 3.66 |
549 | 550 | 1.632409 | AGAGAATGATGGTGGCACAGT | 59.368 | 47.619 | 20.82 | 6.85 | 41.80 | 3.55 |
550 | 551 | 2.040813 | AGAGAATGATGGTGGCACAGTT | 59.959 | 45.455 | 20.82 | 5.97 | 41.80 | 3.16 |
551 | 552 | 2.821969 | GAGAATGATGGTGGCACAGTTT | 59.178 | 45.455 | 20.82 | 5.16 | 41.80 | 2.66 |
552 | 553 | 3.233507 | AGAATGATGGTGGCACAGTTTT | 58.766 | 40.909 | 20.82 | 5.90 | 41.80 | 2.43 |
553 | 554 | 3.006110 | AGAATGATGGTGGCACAGTTTTG | 59.994 | 43.478 | 20.82 | 0.00 | 41.80 | 2.44 |
554 | 555 | 1.039068 | TGATGGTGGCACAGTTTTGG | 58.961 | 50.000 | 20.82 | 0.00 | 41.80 | 3.28 |
555 | 556 | 0.319813 | GATGGTGGCACAGTTTTGGC | 60.320 | 55.000 | 20.82 | 0.00 | 41.80 | 4.52 |
559 | 560 | 2.335011 | GGCACAGTTTTGGCCGTC | 59.665 | 61.111 | 0.00 | 0.00 | 38.04 | 4.79 |
560 | 561 | 2.485795 | GGCACAGTTTTGGCCGTCA | 61.486 | 57.895 | 0.00 | 0.00 | 38.04 | 4.35 |
561 | 562 | 1.659794 | GCACAGTTTTGGCCGTCAT | 59.340 | 52.632 | 0.00 | 0.00 | 0.00 | 3.06 |
562 | 563 | 0.664166 | GCACAGTTTTGGCCGTCATG | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
563 | 564 | 0.039256 | CACAGTTTTGGCCGTCATGG | 60.039 | 55.000 | 0.00 | 0.00 | 42.50 | 3.66 |
564 | 565 | 1.178534 | ACAGTTTTGGCCGTCATGGG | 61.179 | 55.000 | 0.00 | 0.00 | 38.63 | 4.00 |
565 | 566 | 0.893270 | CAGTTTTGGCCGTCATGGGA | 60.893 | 55.000 | 0.00 | 0.00 | 38.63 | 4.37 |
566 | 567 | 0.178975 | AGTTTTGGCCGTCATGGGAA | 60.179 | 50.000 | 0.00 | 0.00 | 38.63 | 3.97 |
567 | 568 | 0.894835 | GTTTTGGCCGTCATGGGAAT | 59.105 | 50.000 | 0.00 | 0.00 | 38.63 | 3.01 |
568 | 569 | 0.894141 | TTTTGGCCGTCATGGGAATG | 59.106 | 50.000 | 0.00 | 0.00 | 38.63 | 2.67 |
569 | 570 | 0.969917 | TTTGGCCGTCATGGGAATGG | 60.970 | 55.000 | 0.00 | 0.00 | 38.63 | 3.16 |
570 | 571 | 2.519302 | GGCCGTCATGGGAATGGG | 60.519 | 66.667 | 0.00 | 0.00 | 38.63 | 4.00 |
571 | 572 | 2.595095 | GCCGTCATGGGAATGGGA | 59.405 | 61.111 | 0.00 | 0.00 | 38.63 | 4.37 |
572 | 573 | 1.526917 | GCCGTCATGGGAATGGGAG | 60.527 | 63.158 | 0.00 | 0.00 | 38.63 | 4.30 |
573 | 574 | 1.526917 | CCGTCATGGGAATGGGAGC | 60.527 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
574 | 575 | 1.224315 | CGTCATGGGAATGGGAGCA | 59.776 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
575 | 576 | 0.179009 | CGTCATGGGAATGGGAGCAT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
576 | 577 | 1.072173 | CGTCATGGGAATGGGAGCATA | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
577 | 578 | 2.787994 | GTCATGGGAATGGGAGCATAG | 58.212 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
578 | 579 | 2.107204 | GTCATGGGAATGGGAGCATAGT | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
579 | 580 | 2.785269 | TCATGGGAATGGGAGCATAGTT | 59.215 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
580 | 581 | 3.980022 | TCATGGGAATGGGAGCATAGTTA | 59.020 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
581 | 582 | 4.603171 | TCATGGGAATGGGAGCATAGTTAT | 59.397 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
582 | 583 | 4.640771 | TGGGAATGGGAGCATAGTTATC | 57.359 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
583 | 584 | 3.330701 | TGGGAATGGGAGCATAGTTATCC | 59.669 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
584 | 585 | 3.330701 | GGGAATGGGAGCATAGTTATCCA | 59.669 | 47.826 | 0.00 | 0.00 | 34.62 | 3.41 |
585 | 586 | 4.202567 | GGGAATGGGAGCATAGTTATCCAA | 60.203 | 45.833 | 0.00 | 0.00 | 34.62 | 3.53 |
586 | 587 | 5.385198 | GGAATGGGAGCATAGTTATCCAAA | 58.615 | 41.667 | 0.00 | 0.00 | 34.62 | 3.28 |
587 | 588 | 5.241728 | GGAATGGGAGCATAGTTATCCAAAC | 59.758 | 44.000 | 0.00 | 0.00 | 34.62 | 2.93 |
588 | 589 | 5.653255 | ATGGGAGCATAGTTATCCAAACT | 57.347 | 39.130 | 0.00 | 0.00 | 34.62 | 2.66 |
589 | 590 | 5.450818 | TGGGAGCATAGTTATCCAAACTT | 57.549 | 39.130 | 0.00 | 0.00 | 34.62 | 2.66 |
590 | 591 | 5.826643 | TGGGAGCATAGTTATCCAAACTTT | 58.173 | 37.500 | 0.00 | 0.00 | 34.62 | 2.66 |
591 | 592 | 6.252995 | TGGGAGCATAGTTATCCAAACTTTT | 58.747 | 36.000 | 0.00 | 0.00 | 34.62 | 2.27 |
592 | 593 | 6.377146 | TGGGAGCATAGTTATCCAAACTTTTC | 59.623 | 38.462 | 0.00 | 0.00 | 34.62 | 2.29 |
593 | 594 | 6.603599 | GGGAGCATAGTTATCCAAACTTTTCT | 59.396 | 38.462 | 0.00 | 0.00 | 34.62 | 2.52 |
594 | 595 | 7.773690 | GGGAGCATAGTTATCCAAACTTTTCTA | 59.226 | 37.037 | 0.00 | 0.00 | 34.62 | 2.10 |
595 | 596 | 9.343539 | GGAGCATAGTTATCCAAACTTTTCTAT | 57.656 | 33.333 | 0.00 | 0.00 | 33.08 | 1.98 |
620 | 621 | 9.950496 | ATTTACAAAACAGTAGAGTGATCATCT | 57.050 | 29.630 | 0.00 | 5.83 | 0.00 | 2.90 |
621 | 622 | 9.778741 | TTTACAAAACAGTAGAGTGATCATCTT | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
622 | 623 | 9.778741 | TTACAAAACAGTAGAGTGATCATCTTT | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
625 | 626 | 7.664082 | AAACAGTAGAGTGATCATCTTTGTG | 57.336 | 36.000 | 0.00 | 4.66 | 0.00 | 3.33 |
871 | 873 | 0.675522 | CTCCGCCGTGTGGGTAAAAT | 60.676 | 55.000 | 4.03 | 0.00 | 38.44 | 1.82 |
910 | 912 | 1.272985 | CCCCTCACACTCTCTCCTCTT | 60.273 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
1215 | 1285 | 2.951642 | ACGATCCGAATTTCAATGGCAT | 59.048 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
1766 | 2133 | 5.306114 | AGGCCTAAACTGTTGAGTAGTTT | 57.694 | 39.130 | 1.29 | 8.04 | 46.69 | 2.66 |
2035 | 2420 | 9.538508 | AAGCAATATCTTGAAATTAAGATTGCC | 57.461 | 29.630 | 17.70 | 7.49 | 45.17 | 4.52 |
2206 | 2600 | 5.549742 | ATCAGAAGGAGCAGAAGGAATAG | 57.450 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2235 | 2629 | 5.311265 | TGTGAAGATTGTTGAGCTTGAGAT | 58.689 | 37.500 | 0.00 | 0.00 | 33.28 | 2.75 |
2759 | 3195 | 5.618056 | ATGTGAGTGCACTTTGATGTTAG | 57.382 | 39.130 | 22.65 | 0.00 | 45.36 | 2.34 |
2804 | 3240 | 9.827198 | AGAATTTGATATAAGATATTTGGGGCA | 57.173 | 29.630 | 0.00 | 0.00 | 0.00 | 5.36 |
3209 | 6468 | 5.376625 | AGCCAACTTGACACAAATAGAGAA | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
3221 | 6480 | 9.204570 | GACACAAATAGAGAAGCTTAAGTACAA | 57.795 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3422 | 6762 | 7.366847 | AGCATAGAAATAGTCTTTCAGCCTA | 57.633 | 36.000 | 4.07 | 0.00 | 37.84 | 3.93 |
3424 | 6764 | 6.425417 | GCATAGAAATAGTCTTTCAGCCTACC | 59.575 | 42.308 | 4.07 | 0.00 | 37.84 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 8.956426 | CCTACAAATAAAACAAGCTTCATAGGA | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
21 | 22 | 9.247861 | AGATCCTACAAATAAAACAAGCTTCAT | 57.752 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
157 | 158 | 4.601019 | CAGCATAGGAAAAGGCATAAACG | 58.399 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
256 | 257 | 8.420222 | TCTTTATCCAATGCAGAAACAGAAAAA | 58.580 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
257 | 258 | 7.950512 | TCTTTATCCAATGCAGAAACAGAAAA | 58.049 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
258 | 259 | 7.523293 | TCTTTATCCAATGCAGAAACAGAAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
259 | 260 | 7.523293 | TTCTTTATCCAATGCAGAAACAGAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
260 | 261 | 7.231317 | ACTTTCTTTATCCAATGCAGAAACAGA | 59.769 | 33.333 | 0.00 | 0.00 | 31.67 | 3.41 |
261 | 262 | 7.373493 | ACTTTCTTTATCCAATGCAGAAACAG | 58.627 | 34.615 | 0.00 | 0.00 | 31.67 | 3.16 |
262 | 263 | 7.014134 | TGACTTTCTTTATCCAATGCAGAAACA | 59.986 | 33.333 | 0.00 | 0.00 | 31.67 | 2.83 |
263 | 264 | 7.370383 | TGACTTTCTTTATCCAATGCAGAAAC | 58.630 | 34.615 | 0.00 | 0.00 | 31.67 | 2.78 |
264 | 265 | 7.231317 | ACTGACTTTCTTTATCCAATGCAGAAA | 59.769 | 33.333 | 0.00 | 0.00 | 33.48 | 2.52 |
265 | 266 | 6.716628 | ACTGACTTTCTTTATCCAATGCAGAA | 59.283 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
266 | 267 | 6.240894 | ACTGACTTTCTTTATCCAATGCAGA | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
267 | 268 | 6.373774 | AGACTGACTTTCTTTATCCAATGCAG | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 4.41 |
268 | 269 | 6.240894 | AGACTGACTTTCTTTATCCAATGCA | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
269 | 270 | 6.749923 | AGACTGACTTTCTTTATCCAATGC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
272 | 273 | 9.877178 | GAGATAAGACTGACTTTCTTTATCCAA | 57.123 | 33.333 | 0.00 | 0.00 | 39.72 | 3.53 |
273 | 274 | 9.261035 | AGAGATAAGACTGACTTTCTTTATCCA | 57.739 | 33.333 | 0.00 | 0.00 | 39.72 | 3.41 |
280 | 281 | 9.474313 | AGTCAATAGAGATAAGACTGACTTTCT | 57.526 | 33.333 | 0.00 | 1.89 | 39.08 | 2.52 |
288 | 289 | 8.995027 | AGTCATCAGTCAATAGAGATAAGACT | 57.005 | 34.615 | 0.00 | 0.00 | 39.95 | 3.24 |
289 | 290 | 9.462174 | CAAGTCATCAGTCAATAGAGATAAGAC | 57.538 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
290 | 291 | 8.637099 | CCAAGTCATCAGTCAATAGAGATAAGA | 58.363 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
291 | 292 | 8.637099 | TCCAAGTCATCAGTCAATAGAGATAAG | 58.363 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
292 | 293 | 8.417106 | GTCCAAGTCATCAGTCAATAGAGATAA | 58.583 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
293 | 294 | 7.782168 | AGTCCAAGTCATCAGTCAATAGAGATA | 59.218 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
294 | 295 | 6.610830 | AGTCCAAGTCATCAGTCAATAGAGAT | 59.389 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
295 | 296 | 5.954752 | AGTCCAAGTCATCAGTCAATAGAGA | 59.045 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
296 | 297 | 6.219417 | AGTCCAAGTCATCAGTCAATAGAG | 57.781 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
297 | 298 | 7.397476 | AGTTAGTCCAAGTCATCAGTCAATAGA | 59.603 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
298 | 299 | 7.551585 | AGTTAGTCCAAGTCATCAGTCAATAG | 58.448 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
299 | 300 | 7.482169 | AGTTAGTCCAAGTCATCAGTCAATA | 57.518 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
300 | 301 | 6.365970 | AGTTAGTCCAAGTCATCAGTCAAT | 57.634 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
301 | 302 | 5.808366 | AGTTAGTCCAAGTCATCAGTCAA | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
302 | 303 | 6.010850 | ACTAGTTAGTCCAAGTCATCAGTCA | 58.989 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
303 | 304 | 6.518208 | ACTAGTTAGTCCAAGTCATCAGTC | 57.482 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
304 | 305 | 6.518208 | GACTAGTTAGTCCAAGTCATCAGT | 57.482 | 41.667 | 7.88 | 0.00 | 45.33 | 3.41 |
317 | 318 | 7.091443 | GTCAGTGCAATTAGTGACTAGTTAGT | 58.909 | 38.462 | 0.00 | 0.00 | 44.08 | 2.24 |
318 | 319 | 7.090808 | TGTCAGTGCAATTAGTGACTAGTTAG | 58.909 | 38.462 | 14.42 | 0.00 | 46.38 | 2.34 |
319 | 320 | 6.988522 | TGTCAGTGCAATTAGTGACTAGTTA | 58.011 | 36.000 | 14.42 | 0.00 | 46.38 | 2.24 |
320 | 321 | 5.853936 | TGTCAGTGCAATTAGTGACTAGTT | 58.146 | 37.500 | 14.42 | 0.00 | 46.38 | 2.24 |
321 | 322 | 5.011125 | ACTGTCAGTGCAATTAGTGACTAGT | 59.989 | 40.000 | 4.21 | 12.79 | 46.38 | 2.57 |
322 | 323 | 5.473931 | ACTGTCAGTGCAATTAGTGACTAG | 58.526 | 41.667 | 4.21 | 12.35 | 46.38 | 2.57 |
323 | 324 | 5.468540 | ACTGTCAGTGCAATTAGTGACTA | 57.531 | 39.130 | 4.21 | 0.00 | 46.38 | 2.59 |
324 | 325 | 4.310769 | GACTGTCAGTGCAATTAGTGACT | 58.689 | 43.478 | 11.04 | 0.00 | 46.38 | 3.41 |
325 | 326 | 3.121944 | CGACTGTCAGTGCAATTAGTGAC | 59.878 | 47.826 | 11.04 | 8.64 | 46.41 | 3.67 |
326 | 327 | 3.317150 | CGACTGTCAGTGCAATTAGTGA | 58.683 | 45.455 | 11.04 | 0.00 | 0.00 | 3.41 |
327 | 328 | 2.413112 | CCGACTGTCAGTGCAATTAGTG | 59.587 | 50.000 | 11.04 | 0.00 | 0.00 | 2.74 |
328 | 329 | 2.037251 | ACCGACTGTCAGTGCAATTAGT | 59.963 | 45.455 | 11.04 | 0.00 | 0.00 | 2.24 |
329 | 330 | 2.413112 | CACCGACTGTCAGTGCAATTAG | 59.587 | 50.000 | 11.04 | 0.00 | 0.00 | 1.73 |
330 | 331 | 2.412870 | CACCGACTGTCAGTGCAATTA | 58.587 | 47.619 | 11.04 | 0.00 | 0.00 | 1.40 |
331 | 332 | 1.229428 | CACCGACTGTCAGTGCAATT | 58.771 | 50.000 | 11.04 | 0.00 | 0.00 | 2.32 |
332 | 333 | 2.918571 | CACCGACTGTCAGTGCAAT | 58.081 | 52.632 | 11.04 | 0.00 | 0.00 | 3.56 |
333 | 334 | 4.436515 | CACCGACTGTCAGTGCAA | 57.563 | 55.556 | 11.04 | 0.00 | 0.00 | 4.08 |
336 | 337 | 0.530650 | AGTTGCACCGACTGTCAGTG | 60.531 | 55.000 | 17.65 | 17.65 | 34.58 | 3.66 |
337 | 338 | 0.178068 | AAGTTGCACCGACTGTCAGT | 59.822 | 50.000 | 4.81 | 4.81 | 0.00 | 3.41 |
338 | 339 | 1.261619 | GAAAGTTGCACCGACTGTCAG | 59.738 | 52.381 | 8.73 | 0.00 | 33.46 | 3.51 |
339 | 340 | 1.295792 | GAAAGTTGCACCGACTGTCA | 58.704 | 50.000 | 8.73 | 0.00 | 33.46 | 3.58 |
340 | 341 | 0.586802 | GGAAAGTTGCACCGACTGTC | 59.413 | 55.000 | 0.00 | 0.00 | 32.69 | 3.51 |
341 | 342 | 2.702847 | GGAAAGTTGCACCGACTGT | 58.297 | 52.632 | 0.00 | 0.00 | 0.00 | 3.55 |
347 | 348 | 1.502190 | GCTAGCGGAAAGTTGCACC | 59.498 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
348 | 349 | 1.132640 | CGCTAGCGGAAAGTTGCAC | 59.867 | 57.895 | 29.29 | 0.00 | 35.56 | 4.57 |
349 | 350 | 0.391130 | ATCGCTAGCGGAAAGTTGCA | 60.391 | 50.000 | 34.76 | 14.33 | 40.25 | 4.08 |
350 | 351 | 0.026803 | CATCGCTAGCGGAAAGTTGC | 59.973 | 55.000 | 34.76 | 0.00 | 40.25 | 4.17 |
351 | 352 | 1.324736 | GACATCGCTAGCGGAAAGTTG | 59.675 | 52.381 | 34.76 | 22.78 | 40.25 | 3.16 |
352 | 353 | 1.067142 | TGACATCGCTAGCGGAAAGTT | 60.067 | 47.619 | 34.76 | 14.73 | 40.25 | 2.66 |
353 | 354 | 0.530744 | TGACATCGCTAGCGGAAAGT | 59.469 | 50.000 | 34.76 | 25.90 | 40.25 | 2.66 |
354 | 355 | 1.640428 | TTGACATCGCTAGCGGAAAG | 58.360 | 50.000 | 34.76 | 23.19 | 40.25 | 2.62 |
355 | 356 | 2.087501 | TTTGACATCGCTAGCGGAAA | 57.912 | 45.000 | 34.76 | 21.45 | 40.25 | 3.13 |
356 | 357 | 2.201732 | GATTTGACATCGCTAGCGGAA | 58.798 | 47.619 | 34.76 | 18.98 | 40.25 | 4.30 |
357 | 358 | 1.538204 | GGATTTGACATCGCTAGCGGA | 60.538 | 52.381 | 34.76 | 22.16 | 40.25 | 5.54 |
358 | 359 | 0.861837 | GGATTTGACATCGCTAGCGG | 59.138 | 55.000 | 34.76 | 22.77 | 40.25 | 5.52 |
359 | 360 | 1.570813 | TGGATTTGACATCGCTAGCG | 58.429 | 50.000 | 30.91 | 30.91 | 41.35 | 4.26 |
360 | 361 | 3.198068 | TCTTGGATTTGACATCGCTAGC | 58.802 | 45.455 | 4.06 | 4.06 | 0.00 | 3.42 |
361 | 362 | 4.872691 | AGTTCTTGGATTTGACATCGCTAG | 59.127 | 41.667 | 0.00 | 0.00 | 0.00 | 3.42 |
362 | 363 | 4.832248 | AGTTCTTGGATTTGACATCGCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
363 | 364 | 3.679389 | AGTTCTTGGATTTGACATCGCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.93 |
364 | 365 | 4.161333 | CAAGTTCTTGGATTTGACATCGC | 58.839 | 43.478 | 4.80 | 0.00 | 0.00 | 4.58 |
365 | 366 | 4.726416 | CCAAGTTCTTGGATTTGACATCG | 58.274 | 43.478 | 22.67 | 0.00 | 44.82 | 3.84 |
366 | 367 | 4.022068 | TGCCAAGTTCTTGGATTTGACATC | 60.022 | 41.667 | 28.87 | 12.40 | 44.82 | 3.06 |
367 | 368 | 3.896888 | TGCCAAGTTCTTGGATTTGACAT | 59.103 | 39.130 | 28.87 | 0.00 | 44.82 | 3.06 |
368 | 369 | 3.295093 | TGCCAAGTTCTTGGATTTGACA | 58.705 | 40.909 | 28.87 | 16.13 | 44.82 | 3.58 |
369 | 370 | 4.320608 | TTGCCAAGTTCTTGGATTTGAC | 57.679 | 40.909 | 28.87 | 14.14 | 44.82 | 3.18 |
370 | 371 | 5.549742 | AATTGCCAAGTTCTTGGATTTGA | 57.450 | 34.783 | 28.87 | 12.95 | 44.82 | 2.69 |
371 | 372 | 5.345741 | CGTAATTGCCAAGTTCTTGGATTTG | 59.654 | 40.000 | 28.87 | 14.97 | 44.82 | 2.32 |
372 | 373 | 5.242838 | TCGTAATTGCCAAGTTCTTGGATTT | 59.757 | 36.000 | 28.87 | 20.36 | 44.82 | 2.17 |
373 | 374 | 4.764823 | TCGTAATTGCCAAGTTCTTGGATT | 59.235 | 37.500 | 28.87 | 22.16 | 44.82 | 3.01 |
374 | 375 | 4.331968 | TCGTAATTGCCAAGTTCTTGGAT | 58.668 | 39.130 | 28.87 | 15.22 | 44.82 | 3.41 |
375 | 376 | 3.745799 | TCGTAATTGCCAAGTTCTTGGA | 58.254 | 40.909 | 28.87 | 13.80 | 44.82 | 3.53 |
376 | 377 | 4.497473 | TTCGTAATTGCCAAGTTCTTGG | 57.503 | 40.909 | 22.75 | 22.75 | 44.82 | 3.61 |
377 | 378 | 5.460646 | ACATTCGTAATTGCCAAGTTCTTG | 58.539 | 37.500 | 5.66 | 5.66 | 0.00 | 3.02 |
378 | 379 | 5.240623 | TGACATTCGTAATTGCCAAGTTCTT | 59.759 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
379 | 380 | 4.759693 | TGACATTCGTAATTGCCAAGTTCT | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
380 | 381 | 4.851558 | GTGACATTCGTAATTGCCAAGTTC | 59.148 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
381 | 382 | 4.277174 | TGTGACATTCGTAATTGCCAAGTT | 59.723 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
382 | 383 | 3.818210 | TGTGACATTCGTAATTGCCAAGT | 59.182 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
383 | 384 | 4.158384 | GTGTGACATTCGTAATTGCCAAG | 58.842 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
384 | 385 | 3.565902 | TGTGTGACATTCGTAATTGCCAA | 59.434 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
385 | 386 | 3.058570 | GTGTGTGACATTCGTAATTGCCA | 60.059 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
386 | 387 | 3.058570 | TGTGTGTGACATTCGTAATTGCC | 60.059 | 43.478 | 0.00 | 0.00 | 0.00 | 4.52 |
387 | 388 | 4.140518 | TGTGTGTGACATTCGTAATTGC | 57.859 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
388 | 389 | 6.142139 | ACATTGTGTGTGACATTCGTAATTG | 58.858 | 36.000 | 0.00 | 0.00 | 40.28 | 2.32 |
389 | 390 | 6.312399 | ACATTGTGTGTGACATTCGTAATT | 57.688 | 33.333 | 0.00 | 0.00 | 40.28 | 1.40 |
390 | 391 | 5.940192 | ACATTGTGTGTGACATTCGTAAT | 57.060 | 34.783 | 0.00 | 0.00 | 40.28 | 1.89 |
391 | 392 | 5.743026 | AACATTGTGTGTGACATTCGTAA | 57.257 | 34.783 | 0.00 | 0.00 | 41.14 | 3.18 |
392 | 393 | 5.743026 | AAACATTGTGTGTGACATTCGTA | 57.257 | 34.783 | 0.00 | 0.00 | 41.14 | 3.43 |
393 | 394 | 4.630894 | AAACATTGTGTGTGACATTCGT | 57.369 | 36.364 | 0.00 | 0.00 | 41.14 | 3.85 |
394 | 395 | 5.273170 | AGAAAACATTGTGTGTGACATTCG | 58.727 | 37.500 | 0.00 | 0.00 | 41.14 | 3.34 |
395 | 396 | 6.264832 | TGAGAAAACATTGTGTGTGACATTC | 58.735 | 36.000 | 0.00 | 0.00 | 41.14 | 2.67 |
396 | 397 | 6.206395 | TGAGAAAACATTGTGTGTGACATT | 57.794 | 33.333 | 0.00 | 0.00 | 41.14 | 2.71 |
397 | 398 | 5.833406 | TGAGAAAACATTGTGTGTGACAT | 57.167 | 34.783 | 0.00 | 0.00 | 41.14 | 3.06 |
398 | 399 | 5.635417 | TTGAGAAAACATTGTGTGTGACA | 57.365 | 34.783 | 0.00 | 0.00 | 41.14 | 3.58 |
399 | 400 | 6.092748 | ACTTTGAGAAAACATTGTGTGTGAC | 58.907 | 36.000 | 0.00 | 0.00 | 41.14 | 3.67 |
400 | 401 | 6.266168 | ACTTTGAGAAAACATTGTGTGTGA | 57.734 | 33.333 | 0.00 | 0.00 | 41.14 | 3.58 |
401 | 402 | 6.949578 | AACTTTGAGAAAACATTGTGTGTG | 57.050 | 33.333 | 0.00 | 0.00 | 41.14 | 3.82 |
402 | 403 | 9.651913 | AATTAACTTTGAGAAAACATTGTGTGT | 57.348 | 25.926 | 0.00 | 0.00 | 44.84 | 3.72 |
422 | 423 | 6.243148 | TCCCTGAACCCAGAGTTAAATTAAC | 58.757 | 40.000 | 7.75 | 7.75 | 43.02 | 2.01 |
423 | 424 | 6.457159 | TCCCTGAACCCAGAGTTAAATTAA | 57.543 | 37.500 | 0.00 | 0.00 | 43.02 | 1.40 |
424 | 425 | 6.273730 | TCTTCCCTGAACCCAGAGTTAAATTA | 59.726 | 38.462 | 0.00 | 0.00 | 43.02 | 1.40 |
425 | 426 | 5.074515 | TCTTCCCTGAACCCAGAGTTAAATT | 59.925 | 40.000 | 0.00 | 0.00 | 43.02 | 1.82 |
426 | 427 | 4.601857 | TCTTCCCTGAACCCAGAGTTAAAT | 59.398 | 41.667 | 0.00 | 0.00 | 43.02 | 1.40 |
427 | 428 | 3.977999 | TCTTCCCTGAACCCAGAGTTAAA | 59.022 | 43.478 | 0.00 | 0.00 | 43.02 | 1.52 |
428 | 429 | 3.593942 | TCTTCCCTGAACCCAGAGTTAA | 58.406 | 45.455 | 0.00 | 0.00 | 43.02 | 2.01 |
429 | 430 | 3.269592 | TCTTCCCTGAACCCAGAGTTA | 57.730 | 47.619 | 0.00 | 0.00 | 43.02 | 2.24 |
430 | 431 | 2.118403 | TCTTCCCTGAACCCAGAGTT | 57.882 | 50.000 | 0.00 | 0.00 | 43.02 | 3.01 |
431 | 432 | 2.106684 | GTTTCTTCCCTGAACCCAGAGT | 59.893 | 50.000 | 0.00 | 0.00 | 43.02 | 3.24 |
432 | 433 | 2.106511 | TGTTTCTTCCCTGAACCCAGAG | 59.893 | 50.000 | 0.00 | 0.00 | 43.02 | 3.35 |
433 | 434 | 2.131854 | TGTTTCTTCCCTGAACCCAGA | 58.868 | 47.619 | 0.00 | 0.00 | 43.02 | 3.86 |
434 | 435 | 2.230660 | GTGTTTCTTCCCTGAACCCAG | 58.769 | 52.381 | 0.00 | 0.00 | 40.09 | 4.45 |
435 | 436 | 1.566703 | TGTGTTTCTTCCCTGAACCCA | 59.433 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
436 | 437 | 1.954382 | GTGTGTTTCTTCCCTGAACCC | 59.046 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
437 | 438 | 2.932261 | AGTGTGTTTCTTCCCTGAACC | 58.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
438 | 439 | 3.489229 | GCAAGTGTGTTTCTTCCCTGAAC | 60.489 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
439 | 440 | 2.687935 | GCAAGTGTGTTTCTTCCCTGAA | 59.312 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
440 | 441 | 2.297701 | GCAAGTGTGTTTCTTCCCTGA | 58.702 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
441 | 442 | 1.338020 | GGCAAGTGTGTTTCTTCCCTG | 59.662 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
442 | 443 | 1.215423 | AGGCAAGTGTGTTTCTTCCCT | 59.785 | 47.619 | 0.00 | 0.00 | 29.19 | 4.20 |
443 | 444 | 1.692411 | AGGCAAGTGTGTTTCTTCCC | 58.308 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
444 | 445 | 2.226674 | GCTAGGCAAGTGTGTTTCTTCC | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
445 | 446 | 3.142174 | AGCTAGGCAAGTGTGTTTCTTC | 58.858 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
446 | 447 | 3.214696 | AGCTAGGCAAGTGTGTTTCTT | 57.785 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
447 | 448 | 2.938956 | AGCTAGGCAAGTGTGTTTCT | 57.061 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
448 | 449 | 2.878406 | TGAAGCTAGGCAAGTGTGTTTC | 59.122 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
449 | 450 | 2.930950 | TGAAGCTAGGCAAGTGTGTTT | 58.069 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
450 | 451 | 2.638480 | TGAAGCTAGGCAAGTGTGTT | 57.362 | 45.000 | 0.00 | 0.00 | 0.00 | 3.32 |
451 | 452 | 2.638480 | TTGAAGCTAGGCAAGTGTGT | 57.362 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
452 | 453 | 3.425359 | CGAATTGAAGCTAGGCAAGTGTG | 60.425 | 47.826 | 2.25 | 0.00 | 0.00 | 3.82 |
453 | 454 | 2.744202 | CGAATTGAAGCTAGGCAAGTGT | 59.256 | 45.455 | 2.25 | 0.00 | 0.00 | 3.55 |
454 | 455 | 2.476854 | GCGAATTGAAGCTAGGCAAGTG | 60.477 | 50.000 | 2.25 | 0.00 | 0.00 | 3.16 |
455 | 456 | 1.740025 | GCGAATTGAAGCTAGGCAAGT | 59.260 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
456 | 457 | 2.012673 | AGCGAATTGAAGCTAGGCAAG | 58.987 | 47.619 | 0.00 | 0.00 | 42.60 | 4.01 |
457 | 458 | 2.113860 | AGCGAATTGAAGCTAGGCAA | 57.886 | 45.000 | 0.00 | 0.00 | 42.60 | 4.52 |
458 | 459 | 2.979814 | TAGCGAATTGAAGCTAGGCA | 57.020 | 45.000 | 0.00 | 0.00 | 44.15 | 4.75 |
459 | 460 | 3.547014 | GCTTTAGCGAATTGAAGCTAGGC | 60.547 | 47.826 | 0.00 | 12.97 | 45.31 | 3.93 |
460 | 461 | 3.002759 | GGCTTTAGCGAATTGAAGCTAGG | 59.997 | 47.826 | 6.85 | 6.17 | 45.31 | 3.02 |
461 | 462 | 3.302740 | CGGCTTTAGCGAATTGAAGCTAG | 60.303 | 47.826 | 6.85 | 0.00 | 45.31 | 3.42 |
462 | 463 | 2.607635 | CGGCTTTAGCGAATTGAAGCTA | 59.392 | 45.455 | 6.85 | 3.57 | 44.15 | 3.32 |
463 | 464 | 1.398390 | CGGCTTTAGCGAATTGAAGCT | 59.602 | 47.619 | 6.85 | 5.23 | 46.53 | 3.74 |
464 | 465 | 1.531883 | CCGGCTTTAGCGAATTGAAGC | 60.532 | 52.381 | 0.00 | 0.00 | 42.76 | 3.86 |
465 | 466 | 1.064060 | CCCGGCTTTAGCGAATTGAAG | 59.936 | 52.381 | 0.00 | 0.00 | 43.26 | 3.02 |
466 | 467 | 1.091537 | CCCGGCTTTAGCGAATTGAA | 58.908 | 50.000 | 0.00 | 0.00 | 43.26 | 2.69 |
467 | 468 | 1.373590 | GCCCGGCTTTAGCGAATTGA | 61.374 | 55.000 | 0.71 | 0.00 | 43.26 | 2.57 |
468 | 469 | 1.064134 | GCCCGGCTTTAGCGAATTG | 59.936 | 57.895 | 0.71 | 0.00 | 43.26 | 2.32 |
469 | 470 | 0.963355 | TTGCCCGGCTTTAGCGAATT | 60.963 | 50.000 | 11.61 | 0.00 | 43.26 | 2.17 |
470 | 471 | 1.376609 | CTTGCCCGGCTTTAGCGAAT | 61.377 | 55.000 | 11.61 | 0.00 | 43.26 | 3.34 |
471 | 472 | 2.032834 | TTGCCCGGCTTTAGCGAA | 59.967 | 55.556 | 11.61 | 0.00 | 43.26 | 4.70 |
472 | 473 | 2.435938 | CTTGCCCGGCTTTAGCGA | 60.436 | 61.111 | 11.61 | 0.00 | 43.26 | 4.93 |
473 | 474 | 4.179579 | GCTTGCCCGGCTTTAGCG | 62.180 | 66.667 | 11.61 | 0.00 | 43.26 | 4.26 |
474 | 475 | 4.179579 | CGCTTGCCCGGCTTTAGC | 62.180 | 66.667 | 11.61 | 14.93 | 41.14 | 3.09 |
475 | 476 | 2.746277 | ACGCTTGCCCGGCTTTAG | 60.746 | 61.111 | 11.61 | 6.68 | 0.00 | 1.85 |
476 | 477 | 2.744709 | GACGCTTGCCCGGCTTTA | 60.745 | 61.111 | 11.61 | 0.00 | 32.31 | 1.85 |
477 | 478 | 4.643387 | AGACGCTTGCCCGGCTTT | 62.643 | 61.111 | 11.61 | 0.00 | 46.11 | 3.51 |
481 | 482 | 3.901797 | AAAGGAGACGCTTGCCCGG | 62.902 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
482 | 483 | 2.358737 | AAAGGAGACGCTTGCCCG | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
483 | 484 | 0.606673 | AAGAAAGGAGACGCTTGCCC | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
484 | 485 | 2.094762 | TAAGAAAGGAGACGCTTGCC | 57.905 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
485 | 486 | 4.213482 | TCTTTTAAGAAAGGAGACGCTTGC | 59.787 | 41.667 | 0.00 | 0.00 | 42.05 | 4.01 |
486 | 487 | 5.924475 | TCTTTTAAGAAAGGAGACGCTTG | 57.076 | 39.130 | 0.00 | 0.00 | 42.05 | 4.01 |
487 | 488 | 6.937436 | TTTCTTTTAAGAAAGGAGACGCTT | 57.063 | 33.333 | 12.38 | 0.00 | 46.80 | 4.68 |
498 | 499 | 9.416284 | ACAGGACAAATACCTTTCTTTTAAGAA | 57.584 | 29.630 | 0.89 | 0.89 | 42.91 | 2.52 |
499 | 500 | 8.990163 | ACAGGACAAATACCTTTCTTTTAAGA | 57.010 | 30.769 | 0.00 | 0.00 | 35.35 | 2.10 |
506 | 507 | 9.892130 | CTCTATTAACAGGACAAATACCTTTCT | 57.108 | 33.333 | 0.00 | 0.00 | 35.35 | 2.52 |
507 | 508 | 9.886132 | TCTCTATTAACAGGACAAATACCTTTC | 57.114 | 33.333 | 0.00 | 0.00 | 35.35 | 2.62 |
510 | 511 | 9.838339 | CATTCTCTATTAACAGGACAAATACCT | 57.162 | 33.333 | 0.00 | 0.00 | 38.40 | 3.08 |
511 | 512 | 9.832445 | TCATTCTCTATTAACAGGACAAATACC | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
514 | 515 | 9.347240 | CCATCATTCTCTATTAACAGGACAAAT | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
515 | 516 | 8.328758 | ACCATCATTCTCTATTAACAGGACAAA | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
516 | 517 | 7.770433 | CACCATCATTCTCTATTAACAGGACAA | 59.230 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
517 | 518 | 7.275183 | CACCATCATTCTCTATTAACAGGACA | 58.725 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
518 | 519 | 6.708054 | CCACCATCATTCTCTATTAACAGGAC | 59.292 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
519 | 520 | 6.688922 | GCCACCATCATTCTCTATTAACAGGA | 60.689 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
520 | 521 | 5.471456 | GCCACCATCATTCTCTATTAACAGG | 59.529 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
521 | 522 | 6.017605 | GTGCCACCATCATTCTCTATTAACAG | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
522 | 523 | 5.822519 | GTGCCACCATCATTCTCTATTAACA | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
523 | 524 | 5.822519 | TGTGCCACCATCATTCTCTATTAAC | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
524 | 525 | 6.000246 | TGTGCCACCATCATTCTCTATTAA | 58.000 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
525 | 526 | 5.130975 | ACTGTGCCACCATCATTCTCTATTA | 59.869 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
526 | 527 | 4.080129 | ACTGTGCCACCATCATTCTCTATT | 60.080 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
527 | 528 | 3.457380 | ACTGTGCCACCATCATTCTCTAT | 59.543 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
528 | 529 | 2.840038 | ACTGTGCCACCATCATTCTCTA | 59.160 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
529 | 530 | 1.632409 | ACTGTGCCACCATCATTCTCT | 59.368 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
530 | 531 | 2.119801 | ACTGTGCCACCATCATTCTC | 57.880 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
531 | 532 | 2.592102 | AACTGTGCCACCATCATTCT | 57.408 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
532 | 533 | 3.319755 | CAAAACTGTGCCACCATCATTC | 58.680 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
533 | 534 | 2.037511 | CCAAAACTGTGCCACCATCATT | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
534 | 535 | 1.619827 | CCAAAACTGTGCCACCATCAT | 59.380 | 47.619 | 0.00 | 0.00 | 0.00 | 2.45 |
535 | 536 | 1.039068 | CCAAAACTGTGCCACCATCA | 58.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
536 | 537 | 0.319813 | GCCAAAACTGTGCCACCATC | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
537 | 538 | 1.747774 | GCCAAAACTGTGCCACCAT | 59.252 | 52.632 | 0.00 | 0.00 | 0.00 | 3.55 |
538 | 539 | 2.430610 | GGCCAAAACTGTGCCACCA | 61.431 | 57.895 | 0.00 | 0.00 | 44.70 | 4.17 |
539 | 540 | 2.421314 | GGCCAAAACTGTGCCACC | 59.579 | 61.111 | 0.00 | 0.00 | 44.70 | 4.61 |
540 | 541 | 2.027460 | CGGCCAAAACTGTGCCAC | 59.973 | 61.111 | 2.24 | 0.00 | 45.63 | 5.01 |
541 | 542 | 2.441164 | ACGGCCAAAACTGTGCCA | 60.441 | 55.556 | 2.24 | 0.00 | 45.63 | 4.92 |
542 | 543 | 1.805428 | ATGACGGCCAAAACTGTGCC | 61.805 | 55.000 | 2.24 | 0.00 | 41.85 | 5.01 |
543 | 544 | 0.664166 | CATGACGGCCAAAACTGTGC | 60.664 | 55.000 | 2.24 | 0.00 | 0.00 | 4.57 |
544 | 545 | 0.039256 | CCATGACGGCCAAAACTGTG | 60.039 | 55.000 | 2.24 | 0.00 | 0.00 | 3.66 |
545 | 546 | 1.178534 | CCCATGACGGCCAAAACTGT | 61.179 | 55.000 | 2.24 | 0.00 | 0.00 | 3.55 |
546 | 547 | 0.893270 | TCCCATGACGGCCAAAACTG | 60.893 | 55.000 | 2.24 | 0.00 | 0.00 | 3.16 |
547 | 548 | 0.178975 | TTCCCATGACGGCCAAAACT | 60.179 | 50.000 | 2.24 | 0.00 | 0.00 | 2.66 |
548 | 549 | 0.894835 | ATTCCCATGACGGCCAAAAC | 59.105 | 50.000 | 2.24 | 0.00 | 0.00 | 2.43 |
549 | 550 | 0.894141 | CATTCCCATGACGGCCAAAA | 59.106 | 50.000 | 2.24 | 0.00 | 31.07 | 2.44 |
550 | 551 | 0.969917 | CCATTCCCATGACGGCCAAA | 60.970 | 55.000 | 2.24 | 0.00 | 31.07 | 3.28 |
551 | 552 | 1.379710 | CCATTCCCATGACGGCCAA | 60.380 | 57.895 | 2.24 | 0.00 | 31.07 | 4.52 |
552 | 553 | 2.275089 | CCATTCCCATGACGGCCA | 59.725 | 61.111 | 2.24 | 0.00 | 31.07 | 5.36 |
553 | 554 | 2.519302 | CCCATTCCCATGACGGCC | 60.519 | 66.667 | 0.00 | 0.00 | 31.07 | 6.13 |
554 | 555 | 1.526917 | CTCCCATTCCCATGACGGC | 60.527 | 63.158 | 0.00 | 0.00 | 31.07 | 5.68 |
555 | 556 | 1.526917 | GCTCCCATTCCCATGACGG | 60.527 | 63.158 | 0.00 | 0.00 | 31.07 | 4.79 |
556 | 557 | 0.179009 | ATGCTCCCATTCCCATGACG | 60.179 | 55.000 | 0.00 | 0.00 | 31.07 | 4.35 |
557 | 558 | 2.107204 | ACTATGCTCCCATTCCCATGAC | 59.893 | 50.000 | 0.00 | 0.00 | 32.85 | 3.06 |
558 | 559 | 2.421725 | ACTATGCTCCCATTCCCATGA | 58.578 | 47.619 | 0.00 | 0.00 | 32.85 | 3.07 |
559 | 560 | 2.965671 | ACTATGCTCCCATTCCCATG | 57.034 | 50.000 | 0.00 | 0.00 | 32.85 | 3.66 |
560 | 561 | 4.018050 | GGATAACTATGCTCCCATTCCCAT | 60.018 | 45.833 | 0.00 | 0.00 | 32.85 | 4.00 |
561 | 562 | 3.330701 | GGATAACTATGCTCCCATTCCCA | 59.669 | 47.826 | 0.00 | 0.00 | 32.85 | 4.37 |
562 | 563 | 3.330701 | TGGATAACTATGCTCCCATTCCC | 59.669 | 47.826 | 0.00 | 0.00 | 32.85 | 3.97 |
563 | 564 | 4.640771 | TGGATAACTATGCTCCCATTCC | 57.359 | 45.455 | 0.00 | 0.00 | 32.85 | 3.01 |
564 | 565 | 6.064717 | AGTTTGGATAACTATGCTCCCATTC | 58.935 | 40.000 | 0.00 | 0.00 | 32.85 | 2.67 |
565 | 566 | 6.018433 | AGTTTGGATAACTATGCTCCCATT | 57.982 | 37.500 | 0.00 | 0.00 | 32.85 | 3.16 |
566 | 567 | 5.653255 | AGTTTGGATAACTATGCTCCCAT | 57.347 | 39.130 | 0.00 | 0.00 | 35.44 | 4.00 |
567 | 568 | 5.450818 | AAGTTTGGATAACTATGCTCCCA | 57.549 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
568 | 569 | 6.603599 | AGAAAAGTTTGGATAACTATGCTCCC | 59.396 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
569 | 570 | 7.631717 | AGAAAAGTTTGGATAACTATGCTCC | 57.368 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
594 | 595 | 9.950496 | AGATGATCACTCTACTGTTTTGTAAAT | 57.050 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
595 | 596 | 9.778741 | AAGATGATCACTCTACTGTTTTGTAAA | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
596 | 597 | 9.778741 | AAAGATGATCACTCTACTGTTTTGTAA | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
597 | 598 | 9.208022 | CAAAGATGATCACTCTACTGTTTTGTA | 57.792 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
598 | 599 | 7.716998 | ACAAAGATGATCACTCTACTGTTTTGT | 59.283 | 33.333 | 0.00 | 6.27 | 0.00 | 2.83 |
599 | 600 | 8.013947 | CACAAAGATGATCACTCTACTGTTTTG | 58.986 | 37.037 | 0.00 | 5.72 | 0.00 | 2.44 |
600 | 601 | 7.716998 | ACACAAAGATGATCACTCTACTGTTTT | 59.283 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
601 | 602 | 7.172190 | CACACAAAGATGATCACTCTACTGTTT | 59.828 | 37.037 | 0.00 | 1.55 | 0.00 | 2.83 |
602 | 603 | 6.648310 | CACACAAAGATGATCACTCTACTGTT | 59.352 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
603 | 604 | 6.015095 | TCACACAAAGATGATCACTCTACTGT | 60.015 | 38.462 | 0.00 | 7.14 | 0.00 | 3.55 |
604 | 605 | 6.393171 | TCACACAAAGATGATCACTCTACTG | 58.607 | 40.000 | 0.00 | 6.59 | 0.00 | 2.74 |
605 | 606 | 6.210385 | ACTCACACAAAGATGATCACTCTACT | 59.790 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
606 | 607 | 6.309980 | CACTCACACAAAGATGATCACTCTAC | 59.690 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
607 | 608 | 6.209391 | TCACTCACACAAAGATGATCACTCTA | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
608 | 609 | 5.011431 | TCACTCACACAAAGATGATCACTCT | 59.989 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
609 | 610 | 5.233225 | TCACTCACACAAAGATGATCACTC | 58.767 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
610 | 611 | 5.219343 | TCACTCACACAAAGATGATCACT | 57.781 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
611 | 612 | 5.929697 | TTCACTCACACAAAGATGATCAC | 57.070 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
612 | 613 | 6.569035 | GCAATTCACTCACACAAAGATGATCA | 60.569 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
613 | 614 | 5.798934 | GCAATTCACTCACACAAAGATGATC | 59.201 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
614 | 615 | 5.242171 | TGCAATTCACTCACACAAAGATGAT | 59.758 | 36.000 | 0.00 | 0.00 | 0.00 | 2.45 |
615 | 616 | 4.579753 | TGCAATTCACTCACACAAAGATGA | 59.420 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
616 | 617 | 4.862350 | TGCAATTCACTCACACAAAGATG | 58.138 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
617 | 618 | 4.823442 | TCTGCAATTCACTCACACAAAGAT | 59.177 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
618 | 619 | 4.198530 | TCTGCAATTCACTCACACAAAGA | 58.801 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
619 | 620 | 4.556942 | TCTGCAATTCACTCACACAAAG | 57.443 | 40.909 | 0.00 | 0.00 | 0.00 | 2.77 |
620 | 621 | 4.979943 | TTCTGCAATTCACTCACACAAA | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
621 | 622 | 4.979943 | TTTCTGCAATTCACTCACACAA | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 3.33 |
622 | 623 | 4.439974 | GGTTTTCTGCAATTCACTCACACA | 60.440 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
625 | 626 | 4.044426 | GTGGTTTTCTGCAATTCACTCAC | 58.956 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
891 | 893 | 2.099405 | GAAGAGGAGAGAGTGTGAGGG | 58.901 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
910 | 912 | 2.043852 | GTGAGGAGAGGGCGAGGA | 60.044 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
967 | 969 | 2.640989 | CAGAACGACGGTCGGTGA | 59.359 | 61.111 | 31.19 | 0.00 | 41.51 | 4.02 |
969 | 971 | 3.292936 | AGCAGAACGACGGTCGGT | 61.293 | 61.111 | 31.19 | 27.48 | 45.79 | 4.69 |
1215 | 1285 | 4.202000 | ACAAAACATTCACATCTGCGTCAA | 60.202 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
1766 | 2133 | 6.383436 | TCTGGCCATTCAAAATCAATCCATTA | 59.617 | 34.615 | 5.51 | 0.00 | 0.00 | 1.90 |
2035 | 2420 | 2.924290 | GCCAACTACAGTTTCTAGCTCG | 59.076 | 50.000 | 0.00 | 0.00 | 35.83 | 5.03 |
2206 | 2600 | 4.217118 | AGCTCAACAATCTTCACATCAACC | 59.783 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
2235 | 2629 | 2.488347 | GCCTTCAAGTTCCCCACTACAA | 60.488 | 50.000 | 0.00 | 0.00 | 32.94 | 2.41 |
2477 | 2912 | 3.898123 | GCACCCTACTCATCTAAGATGGA | 59.102 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2759 | 3195 | 4.386867 | TCTACTAAGCACATACACCAGC | 57.613 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2804 | 3240 | 4.989279 | AAAAGTGCACTCACATTCAACT | 57.011 | 36.364 | 21.95 | 0.00 | 45.49 | 3.16 |
3111 | 5798 | 6.045459 | TGTTATATGATATGAGGCTTGGGGTT | 59.955 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
3422 | 6762 | 0.250338 | GACAGAGAAAGCAACCCGGT | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3424 | 6764 | 1.532868 | CAAGACAGAGAAAGCAACCCG | 59.467 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.