Multiple sequence alignment - TraesCS3B01G337800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G337800 chr3B 100.000 4792 0 0 1 4792 544543771 544548562 0.000000e+00 8850.0
1 TraesCS3B01G337800 chr3B 98.222 225 4 0 4 228 544538375 544538599 1.250000e-105 394.0
2 TraesCS3B01G337800 chr3B 82.915 199 17 9 265 448 377404087 377403891 3.840000e-36 163.0
3 TraesCS3B01G337800 chr3D 94.620 3160 112 20 450 3584 418214335 418217461 0.000000e+00 4841.0
4 TraesCS3B01G337800 chr3D 97.040 642 13 2 3578 4219 418218424 418219059 0.000000e+00 1075.0
5 TraesCS3B01G337800 chr3D 93.390 590 14 3 4207 4792 418227041 418227609 0.000000e+00 850.0
6 TraesCS3B01G337800 chr3D 90.097 414 33 6 2075 2486 283311635 283311228 9.130000e-147 531.0
7 TraesCS3B01G337800 chr3D 89.781 411 34 5 2081 2487 545256785 545256379 1.980000e-143 520.0
8 TraesCS3B01G337800 chr3D 83.920 199 17 7 265 448 283307034 283306836 4.930000e-40 176.0
9 TraesCS3B01G337800 chr3D 89.899 99 9 1 350 448 588201666 588201569 5.030000e-25 126.0
10 TraesCS3B01G337800 chr3D 100.000 30 0 0 233 262 418164944 418164973 6.700000e-04 56.5
11 TraesCS3B01G337800 chr3A 92.234 1674 107 13 2488 4147 532857344 532855680 0.000000e+00 2350.0
12 TraesCS3B01G337800 chr3A 88.745 773 47 14 470 1229 532858929 532858184 0.000000e+00 909.0
13 TraesCS3B01G337800 chr3A 92.308 572 24 4 1252 1823 532858186 532857635 0.000000e+00 795.0
14 TraesCS3B01G337800 chr3A 95.185 270 12 1 4418 4687 532855328 532855060 4.430000e-115 425.0
15 TraesCS3B01G337800 chr3A 93.585 265 6 2 1810 2074 532857588 532857335 7.520000e-103 385.0
16 TraesCS3B01G337800 chr3A 90.566 106 9 1 344 448 370215500 370215395 6.470000e-29 139.0
17 TraesCS3B01G337800 chr3A 94.186 86 4 1 4708 4792 532855075 532854990 3.890000e-26 130.0
18 TraesCS3B01G337800 chr2B 90.639 438 36 4 2053 2488 415996846 415997280 1.160000e-160 577.0
19 TraesCS3B01G337800 chr2B 97.403 231 6 0 4 234 39820150 39820380 1.250000e-105 394.0
20 TraesCS3B01G337800 chr2B 79.545 176 28 5 274 448 776430675 776430843 8.420000e-23 119.0
21 TraesCS3B01G337800 chr2B 100.000 39 0 0 265 303 61606861 61606899 6.650000e-09 73.1
22 TraesCS3B01G337800 chr7B 89.880 415 36 5 2075 2486 181408296 181407885 3.280000e-146 529.0
23 TraesCS3B01G337800 chr7B 98.222 225 4 0 4 228 648679778 648680002 1.250000e-105 394.0
24 TraesCS3B01G337800 chr7B 97.778 225 5 0 4 228 648690633 648690857 5.820000e-104 388.0
25 TraesCS3B01G337800 chr5D 89.286 420 34 8 2075 2490 423970414 423970826 2.560000e-142 516.0
26 TraesCS3B01G337800 chr5D 89.623 106 10 1 344 448 222741206 222741311 3.010000e-27 134.0
27 TraesCS3B01G337800 chr5D 88.679 106 10 2 344 448 546855058 546855162 1.400000e-25 128.0
28 TraesCS3B01G337800 chr5D 100.000 28 0 0 4112 4139 101702368 101702395 9.000000e-03 52.8
29 TraesCS3B01G337800 chr2D 88.036 443 42 8 2066 2505 56324332 56323898 9.200000e-142 514.0
30 TraesCS3B01G337800 chr5B 89.048 420 37 7 2073 2488 340615704 340615290 3.310000e-141 512.0
31 TraesCS3B01G337800 chr5B 97.368 228 6 0 4 231 338858965 338858738 5.820000e-104 388.0
32 TraesCS3B01G337800 chr6D 89.346 413 33 8 2075 2485 348081396 348081799 4.280000e-140 508.0
33 TraesCS3B01G337800 chr6B 98.222 225 4 0 4 228 21437393 21437617 1.250000e-105 394.0
34 TraesCS3B01G337800 chr6B 98.222 225 4 0 4 228 21443010 21443234 1.250000e-105 394.0
35 TraesCS3B01G337800 chrUn 97.778 225 5 0 4 228 306515125 306515349 5.820000e-104 388.0
36 TraesCS3B01G337800 chr4B 97.778 225 5 0 4 228 172965753 172965977 5.820000e-104 388.0
37 TraesCS3B01G337800 chr4B 84.783 184 14 7 265 448 606914167 606914336 6.380000e-39 172.0
38 TraesCS3B01G337800 chr4D 87.568 185 15 6 265 448 479683234 479683411 1.750000e-49 207.0
39 TraesCS3B01G337800 chr4D 89.623 106 9 2 344 448 53789017 53789121 3.010000e-27 134.0
40 TraesCS3B01G337800 chr1D 81.000 200 21 9 265 448 340670087 340669889 5.000000e-30 143.0
41 TraesCS3B01G337800 chr4A 81.152 191 21 6 261 448 744420269 744420091 6.470000e-29 139.0
42 TraesCS3B01G337800 chr5A 100.000 28 0 0 4112 4139 98447716 98447689 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G337800 chr3B 544543771 544548562 4791 False 8850.000000 8850 100.000000 1 4792 1 chr3B.!!$F2 4791
1 TraesCS3B01G337800 chr3D 418214335 418219059 4724 False 2958.000000 4841 95.830000 450 4219 2 chr3D.!!$F3 3769
2 TraesCS3B01G337800 chr3D 418227041 418227609 568 False 850.000000 850 93.390000 4207 4792 1 chr3D.!!$F2 585
3 TraesCS3B01G337800 chr3A 532854990 532858929 3939 True 832.333333 2350 92.707167 470 4792 6 chr3A.!!$R2 4322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.031515 TGGTGAGGGGGTCATCGTAT 60.032 55.0 0.0 0.0 39.46 3.06 F
395 396 0.033504 GGGTCATCGTATCCATGCGT 59.966 55.0 0.0 0.0 37.19 5.24 F
1307 1325 0.248215 GCCATCAAATCGAACAGCCG 60.248 55.0 0.0 0.0 0.00 5.52 F
3019 3115 0.035630 AGCAGCTCATGAACCCAGAC 60.036 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1272 0.322816 TGCCCTCAGAGAAATGGTGC 60.323 55.000 0.00 0.00 0.00 5.01 R
1541 1559 0.598680 CCTCCTTCGCAGCGATAAGG 60.599 60.000 24.31 24.31 35.81 2.69 R
3065 3161 1.139654 AGTCTGCACAAGAACTCAGCA 59.860 47.619 0.00 0.00 36.40 4.41 R
4704 5905 0.109735 GCGGCCACTGCTTAGTTTTC 60.110 55.000 2.24 0.00 37.74 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.148825 GCGCGTGGATGTCCCTCT 62.149 66.667 8.43 0.00 35.38 3.69
37 38 2.579201 CGCGTGGATGTCCCTCTT 59.421 61.111 0.00 0.00 35.38 2.85
38 39 1.811266 CGCGTGGATGTCCCTCTTG 60.811 63.158 0.00 0.00 35.38 3.02
39 40 1.296715 GCGTGGATGTCCCTCTTGT 59.703 57.895 0.00 0.00 35.38 3.16
40 41 0.321653 GCGTGGATGTCCCTCTTGTT 60.322 55.000 0.00 0.00 35.38 2.83
41 42 1.726853 CGTGGATGTCCCTCTTGTTC 58.273 55.000 0.00 0.00 35.38 3.18
42 43 1.276421 CGTGGATGTCCCTCTTGTTCT 59.724 52.381 0.00 0.00 35.38 3.01
43 44 2.675317 CGTGGATGTCCCTCTTGTTCTC 60.675 54.545 0.00 0.00 35.38 2.87
44 45 2.303022 GTGGATGTCCCTCTTGTTCTCA 59.697 50.000 0.00 0.00 35.38 3.27
45 46 3.054802 GTGGATGTCCCTCTTGTTCTCAT 60.055 47.826 0.00 0.00 35.38 2.90
46 47 3.054875 TGGATGTCCCTCTTGTTCTCATG 60.055 47.826 0.00 0.00 35.38 3.07
47 48 2.479566 TGTCCCTCTTGTTCTCATGC 57.520 50.000 0.00 0.00 0.00 4.06
48 49 1.980765 TGTCCCTCTTGTTCTCATGCT 59.019 47.619 0.00 0.00 0.00 3.79
49 50 2.027745 TGTCCCTCTTGTTCTCATGCTC 60.028 50.000 0.00 0.00 0.00 4.26
50 51 2.027745 GTCCCTCTTGTTCTCATGCTCA 60.028 50.000 0.00 0.00 0.00 4.26
51 52 2.842496 TCCCTCTTGTTCTCATGCTCAT 59.158 45.455 0.00 0.00 0.00 2.90
52 53 4.033009 TCCCTCTTGTTCTCATGCTCATA 58.967 43.478 0.00 0.00 0.00 2.15
53 54 4.125703 CCCTCTTGTTCTCATGCTCATAC 58.874 47.826 0.00 0.00 0.00 2.39
54 55 4.383444 CCCTCTTGTTCTCATGCTCATACA 60.383 45.833 0.00 0.00 0.00 2.29
55 56 5.181009 CCTCTTGTTCTCATGCTCATACAA 58.819 41.667 0.00 0.00 0.00 2.41
56 57 5.293814 CCTCTTGTTCTCATGCTCATACAAG 59.706 44.000 13.21 13.21 42.18 3.16
57 58 5.798132 TCTTGTTCTCATGCTCATACAAGT 58.202 37.500 16.50 0.00 41.76 3.16
58 59 5.640783 TCTTGTTCTCATGCTCATACAAGTG 59.359 40.000 16.50 2.07 41.76 3.16
59 60 4.256110 TGTTCTCATGCTCATACAAGTGG 58.744 43.478 0.00 0.00 0.00 4.00
60 61 3.548745 TCTCATGCTCATACAAGTGGG 57.451 47.619 0.00 0.00 0.00 4.61
61 62 2.171237 TCTCATGCTCATACAAGTGGGG 59.829 50.000 0.00 0.00 0.00 4.96
62 63 2.171237 CTCATGCTCATACAAGTGGGGA 59.829 50.000 0.00 0.00 0.00 4.81
63 64 2.575735 TCATGCTCATACAAGTGGGGAA 59.424 45.455 0.00 0.00 0.00 3.97
64 65 2.787473 TGCTCATACAAGTGGGGAAG 57.213 50.000 0.00 0.00 0.00 3.46
65 66 1.281867 TGCTCATACAAGTGGGGAAGG 59.718 52.381 0.00 0.00 0.00 3.46
66 67 1.559682 GCTCATACAAGTGGGGAAGGA 59.440 52.381 0.00 0.00 0.00 3.36
67 68 2.420687 GCTCATACAAGTGGGGAAGGAG 60.421 54.545 0.00 0.00 0.00 3.69
68 69 1.559682 TCATACAAGTGGGGAAGGAGC 59.440 52.381 0.00 0.00 0.00 4.70
69 70 0.919710 ATACAAGTGGGGAAGGAGCC 59.080 55.000 0.00 0.00 0.00 4.70
70 71 0.178873 TACAAGTGGGGAAGGAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
71 72 1.301293 CAAGTGGGGAAGGAGCCTC 59.699 63.158 0.00 0.00 0.00 4.70
72 73 1.925972 AAGTGGGGAAGGAGCCTCC 60.926 63.158 1.26 1.26 36.58 4.30
73 74 3.412408 GTGGGGAAGGAGCCTCCC 61.412 72.222 7.26 12.85 42.84 4.30
74 75 3.626596 TGGGGAAGGAGCCTCCCT 61.627 66.667 7.26 0.00 43.11 4.20
76 77 1.004361 GGGGAAGGAGCCTCCCTTA 59.996 63.158 7.26 0.00 45.97 2.69
77 78 0.402126 GGGGAAGGAGCCTCCCTTAT 60.402 60.000 7.26 0.00 45.97 1.73
78 79 1.132495 GGGGAAGGAGCCTCCCTTATA 60.132 57.143 7.26 0.00 45.97 0.98
79 80 2.699281 GGGGAAGGAGCCTCCCTTATAA 60.699 54.545 7.26 0.00 45.97 0.98
80 81 3.053826 GGGAAGGAGCCTCCCTTATAAA 58.946 50.000 7.26 0.00 45.97 1.40
81 82 3.073209 GGGAAGGAGCCTCCCTTATAAAG 59.927 52.174 7.26 0.00 45.97 1.85
82 83 3.974642 GGAAGGAGCCTCCCTTATAAAGA 59.025 47.826 7.26 0.00 45.97 2.52
83 84 4.041075 GGAAGGAGCCTCCCTTATAAAGAG 59.959 50.000 7.26 5.54 45.97 2.85
84 85 4.041075 GAAGGAGCCTCCCTTATAAAGAGG 59.959 50.000 20.08 20.08 45.97 3.69
90 91 5.037383 CCTCCCTTATAAAGAGGTCCAAC 57.963 47.826 17.61 0.00 41.96 3.77
91 92 4.722279 CCTCCCTTATAAAGAGGTCCAACT 59.278 45.833 17.61 0.00 41.96 3.16
92 93 5.163290 CCTCCCTTATAAAGAGGTCCAACTC 60.163 48.000 17.61 0.00 41.96 3.01
93 94 4.720273 TCCCTTATAAAGAGGTCCAACTCC 59.280 45.833 0.00 0.00 38.26 3.85
94 95 4.141459 CCCTTATAAAGAGGTCCAACTCCC 60.141 50.000 0.00 0.00 38.26 4.30
95 96 4.722279 CCTTATAAAGAGGTCCAACTCCCT 59.278 45.833 0.00 0.00 38.26 4.20
96 97 5.163290 CCTTATAAAGAGGTCCAACTCCCTC 60.163 48.000 0.00 0.00 46.34 4.30
101 102 3.613494 GAGGTCCAACTCCCTCTAAAC 57.387 52.381 0.00 0.00 43.29 2.01
102 103 3.174779 GAGGTCCAACTCCCTCTAAACT 58.825 50.000 0.00 0.00 43.29 2.66
103 104 4.351127 GAGGTCCAACTCCCTCTAAACTA 58.649 47.826 0.00 0.00 43.29 2.24
104 105 4.354662 AGGTCCAACTCCCTCTAAACTAG 58.645 47.826 0.00 0.00 0.00 2.57
105 106 3.118702 GGTCCAACTCCCTCTAAACTAGC 60.119 52.174 0.00 0.00 0.00 3.42
106 107 3.514309 GTCCAACTCCCTCTAAACTAGCA 59.486 47.826 0.00 0.00 0.00 3.49
107 108 4.020485 GTCCAACTCCCTCTAAACTAGCAA 60.020 45.833 0.00 0.00 0.00 3.91
108 109 4.223032 TCCAACTCCCTCTAAACTAGCAAG 59.777 45.833 0.00 0.00 0.00 4.01
109 110 4.508662 CAACTCCCTCTAAACTAGCAAGG 58.491 47.826 0.00 0.00 0.00 3.61
110 111 3.792515 ACTCCCTCTAAACTAGCAAGGT 58.207 45.455 0.00 0.00 0.00 3.50
111 112 3.515901 ACTCCCTCTAAACTAGCAAGGTG 59.484 47.826 0.00 0.00 0.00 4.00
112 113 2.838202 TCCCTCTAAACTAGCAAGGTGG 59.162 50.000 0.00 0.00 0.00 4.61
113 114 2.092914 CCCTCTAAACTAGCAAGGTGGG 60.093 54.545 0.00 0.00 0.00 4.61
114 115 2.838202 CCTCTAAACTAGCAAGGTGGGA 59.162 50.000 0.00 0.00 0.00 4.37
115 116 3.369576 CCTCTAAACTAGCAAGGTGGGAC 60.370 52.174 0.00 0.00 0.00 4.46
116 117 3.515901 CTCTAAACTAGCAAGGTGGGACT 59.484 47.826 0.00 0.00 0.00 3.85
117 118 4.680407 TCTAAACTAGCAAGGTGGGACTA 58.320 43.478 0.00 0.00 0.00 2.59
118 119 5.088730 TCTAAACTAGCAAGGTGGGACTAA 58.911 41.667 0.00 0.00 0.00 2.24
119 120 4.717279 AAACTAGCAAGGTGGGACTAAA 57.283 40.909 0.00 0.00 0.00 1.85
120 121 3.697619 ACTAGCAAGGTGGGACTAAAC 57.302 47.619 0.00 0.00 0.00 2.01
121 122 3.248888 ACTAGCAAGGTGGGACTAAACT 58.751 45.455 0.00 0.00 0.00 2.66
122 123 3.651423 ACTAGCAAGGTGGGACTAAACTT 59.349 43.478 0.00 0.00 0.00 2.66
123 124 3.595190 AGCAAGGTGGGACTAAACTTT 57.405 42.857 0.00 0.00 0.00 2.66
124 125 4.717279 AGCAAGGTGGGACTAAACTTTA 57.283 40.909 0.00 0.00 0.00 1.85
125 126 4.652822 AGCAAGGTGGGACTAAACTTTAG 58.347 43.478 6.96 6.96 0.00 1.85
126 127 4.104261 AGCAAGGTGGGACTAAACTTTAGT 59.896 41.667 13.09 13.09 0.00 2.24
127 128 4.825634 GCAAGGTGGGACTAAACTTTAGTT 59.174 41.667 14.17 0.00 40.50 2.24
128 129 5.048921 GCAAGGTGGGACTAAACTTTAGTTC 60.049 44.000 14.17 12.33 37.25 3.01
129 130 5.238624 AGGTGGGACTAAACTTTAGTTCC 57.761 43.478 24.49 24.49 42.37 3.62
132 133 4.976864 TGGGACTAAACTTTAGTTCCACC 58.023 43.478 28.04 19.97 45.69 4.61
133 134 4.661709 TGGGACTAAACTTTAGTTCCACCT 59.338 41.667 28.04 2.35 45.69 4.00
134 135 5.221783 TGGGACTAAACTTTAGTTCCACCTC 60.222 44.000 28.04 11.92 45.69 3.85
135 136 5.012871 GGGACTAAACTTTAGTTCCACCTCT 59.987 44.000 25.64 0.00 41.78 3.69
136 137 6.465464 GGGACTAAACTTTAGTTCCACCTCTT 60.465 42.308 25.64 0.00 41.78 2.85
137 138 7.256439 GGGACTAAACTTTAGTTCCACCTCTTA 60.256 40.741 25.64 0.00 41.78 2.10
138 139 7.601886 GGACTAAACTTTAGTTCCACCTCTTAC 59.398 40.741 14.17 0.00 37.25 2.34
139 140 7.448420 ACTAAACTTTAGTTCCACCTCTTACC 58.552 38.462 8.19 0.00 37.25 2.85
140 141 6.511017 AAACTTTAGTTCCACCTCTTACCT 57.489 37.500 0.00 0.00 37.25 3.08
141 142 6.511017 AACTTTAGTTCCACCTCTTACCTT 57.489 37.500 0.00 0.00 31.64 3.50
142 143 5.866207 ACTTTAGTTCCACCTCTTACCTTG 58.134 41.667 0.00 0.00 0.00 3.61
143 144 2.861147 AGTTCCACCTCTTACCTTGC 57.139 50.000 0.00 0.00 0.00 4.01
144 145 2.054799 AGTTCCACCTCTTACCTTGCA 58.945 47.619 0.00 0.00 0.00 4.08
145 146 2.152016 GTTCCACCTCTTACCTTGCAC 58.848 52.381 0.00 0.00 0.00 4.57
146 147 1.429930 TCCACCTCTTACCTTGCACA 58.570 50.000 0.00 0.00 0.00 4.57
147 148 1.771854 TCCACCTCTTACCTTGCACAA 59.228 47.619 0.00 0.00 0.00 3.33
148 149 2.173782 TCCACCTCTTACCTTGCACAAA 59.826 45.455 0.00 0.00 0.00 2.83
149 150 3.157087 CCACCTCTTACCTTGCACAAAT 58.843 45.455 0.00 0.00 0.00 2.32
150 151 3.057315 CCACCTCTTACCTTGCACAAATG 60.057 47.826 0.00 0.00 0.00 2.32
151 152 3.057315 CACCTCTTACCTTGCACAAATGG 60.057 47.826 0.00 0.00 0.00 3.16
152 153 2.493278 CCTCTTACCTTGCACAAATGGG 59.507 50.000 0.00 0.00 0.00 4.00
153 154 1.892474 TCTTACCTTGCACAAATGGGC 59.108 47.619 0.00 0.00 46.69 5.36
154 155 1.895131 CTTACCTTGCACAAATGGGCT 59.105 47.619 9.34 0.00 46.62 5.19
155 156 1.255882 TACCTTGCACAAATGGGCTG 58.744 50.000 9.34 2.06 46.62 4.85
156 157 1.375013 CCTTGCACAAATGGGCTGC 60.375 57.895 9.34 0.00 46.62 5.25
157 158 1.735198 CTTGCACAAATGGGCTGCG 60.735 57.895 9.34 0.00 46.62 5.18
158 159 2.424705 CTTGCACAAATGGGCTGCGT 62.425 55.000 9.34 0.00 46.62 5.24
159 160 2.431260 GCACAAATGGGCTGCGTG 60.431 61.111 0.00 0.00 42.27 5.34
160 161 2.259204 CACAAATGGGCTGCGTGG 59.741 61.111 0.00 0.00 0.00 4.94
161 162 2.990967 ACAAATGGGCTGCGTGGG 60.991 61.111 0.00 0.00 0.00 4.61
162 163 4.440127 CAAATGGGCTGCGTGGGC 62.440 66.667 0.00 0.00 40.52 5.36
168 169 4.537433 GGCTGCGTGGGCCTCTAG 62.537 72.222 4.53 3.75 45.57 2.43
169 170 4.537433 GCTGCGTGGGCCTCTAGG 62.537 72.222 4.53 0.00 38.85 3.02
170 171 2.759973 CTGCGTGGGCCTCTAGGA 60.760 66.667 4.53 0.00 38.85 2.94
171 172 2.041922 TGCGTGGGCCTCTAGGAT 60.042 61.111 4.53 0.00 38.85 3.24
172 173 1.689233 TGCGTGGGCCTCTAGGATT 60.689 57.895 4.53 0.00 38.85 3.01
173 174 1.271840 TGCGTGGGCCTCTAGGATTT 61.272 55.000 4.53 0.00 38.85 2.17
174 175 0.756903 GCGTGGGCCTCTAGGATTTA 59.243 55.000 4.53 0.00 37.39 1.40
175 176 1.348036 GCGTGGGCCTCTAGGATTTAT 59.652 52.381 4.53 0.00 37.39 1.40
176 177 2.224548 GCGTGGGCCTCTAGGATTTATT 60.225 50.000 4.53 0.00 37.39 1.40
177 178 3.007614 GCGTGGGCCTCTAGGATTTATTA 59.992 47.826 4.53 0.00 37.39 0.98
178 179 4.822026 CGTGGGCCTCTAGGATTTATTAG 58.178 47.826 4.53 0.00 37.39 1.73
179 180 4.322801 CGTGGGCCTCTAGGATTTATTAGG 60.323 50.000 4.53 0.00 37.39 2.69
180 181 4.844655 GTGGGCCTCTAGGATTTATTAGGA 59.155 45.833 4.53 0.00 37.39 2.94
181 182 5.309806 GTGGGCCTCTAGGATTTATTAGGAA 59.690 44.000 4.53 0.00 37.39 3.36
182 183 6.012421 GTGGGCCTCTAGGATTTATTAGGAAT 60.012 42.308 4.53 0.00 37.39 3.01
183 184 6.566480 TGGGCCTCTAGGATTTATTAGGAATT 59.434 38.462 4.53 0.00 37.39 2.17
184 185 7.075009 TGGGCCTCTAGGATTTATTAGGAATTT 59.925 37.037 4.53 0.00 37.39 1.82
185 186 7.612244 GGGCCTCTAGGATTTATTAGGAATTTC 59.388 40.741 0.84 0.00 37.39 2.17
186 187 8.387039 GGCCTCTAGGATTTATTAGGAATTTCT 58.613 37.037 0.00 0.00 37.39 2.52
187 188 9.225436 GCCTCTAGGATTTATTAGGAATTTCTG 57.775 37.037 0.00 0.00 37.39 3.02
201 202 9.681062 TTAGGAATTTCTGAAACTACTATTGGG 57.319 33.333 4.53 0.00 0.00 4.12
202 203 6.603599 AGGAATTTCTGAAACTACTATTGGGC 59.396 38.462 4.73 0.00 0.00 5.36
203 204 6.603599 GGAATTTCTGAAACTACTATTGGGCT 59.396 38.462 4.73 0.00 0.00 5.19
204 205 7.773690 GGAATTTCTGAAACTACTATTGGGCTA 59.226 37.037 4.73 0.00 0.00 3.93
205 206 8.738645 AATTTCTGAAACTACTATTGGGCTAG 57.261 34.615 4.73 0.00 0.00 3.42
206 207 5.871396 TCTGAAACTACTATTGGGCTAGG 57.129 43.478 0.00 0.00 0.00 3.02
207 208 5.278061 TCTGAAACTACTATTGGGCTAGGT 58.722 41.667 0.00 0.00 0.00 3.08
208 209 5.363005 TCTGAAACTACTATTGGGCTAGGTC 59.637 44.000 0.00 0.00 0.00 3.85
209 210 5.278061 TGAAACTACTATTGGGCTAGGTCT 58.722 41.667 0.00 0.00 0.00 3.85
210 211 6.437755 TGAAACTACTATTGGGCTAGGTCTA 58.562 40.000 0.00 0.00 0.00 2.59
211 212 6.899075 TGAAACTACTATTGGGCTAGGTCTAA 59.101 38.462 0.00 0.00 0.00 2.10
212 213 7.400915 TGAAACTACTATTGGGCTAGGTCTAAA 59.599 37.037 0.00 0.00 0.00 1.85
213 214 7.932683 AACTACTATTGGGCTAGGTCTAAAT 57.067 36.000 0.00 0.00 0.00 1.40
214 215 9.443365 AAACTACTATTGGGCTAGGTCTAAATA 57.557 33.333 0.00 0.00 0.00 1.40
215 216 8.653036 ACTACTATTGGGCTAGGTCTAAATAG 57.347 38.462 0.00 0.00 34.99 1.73
216 217 6.936968 ACTATTGGGCTAGGTCTAAATAGG 57.063 41.667 0.00 0.00 33.76 2.57
217 218 6.631107 ACTATTGGGCTAGGTCTAAATAGGA 58.369 40.000 0.00 0.00 33.76 2.94
218 219 7.080353 ACTATTGGGCTAGGTCTAAATAGGAA 58.920 38.462 0.00 0.00 33.76 3.36
219 220 6.841781 ATTGGGCTAGGTCTAAATAGGAAA 57.158 37.500 0.00 0.00 0.00 3.13
220 221 6.645884 TTGGGCTAGGTCTAAATAGGAAAA 57.354 37.500 0.00 0.00 0.00 2.29
221 222 6.645884 TGGGCTAGGTCTAAATAGGAAAAA 57.354 37.500 0.00 0.00 0.00 1.94
242 243 6.521151 AAAATTCCAACAGATGCTCTTAGG 57.479 37.500 0.00 0.00 0.00 2.69
243 244 3.634397 TTCCAACAGATGCTCTTAGGG 57.366 47.619 0.00 0.00 0.00 3.53
244 245 1.210478 TCCAACAGATGCTCTTAGGGC 59.790 52.381 0.00 0.00 0.00 5.19
245 246 1.211457 CCAACAGATGCTCTTAGGGCT 59.789 52.381 5.43 0.00 0.00 5.19
246 247 2.356535 CCAACAGATGCTCTTAGGGCTT 60.357 50.000 5.43 0.00 0.00 4.35
247 248 3.350833 CAACAGATGCTCTTAGGGCTTT 58.649 45.455 5.43 0.00 0.00 3.51
248 249 2.996631 ACAGATGCTCTTAGGGCTTTG 58.003 47.619 5.43 3.69 0.00 2.77
249 250 2.573462 ACAGATGCTCTTAGGGCTTTGA 59.427 45.455 5.43 0.00 0.00 2.69
250 251 3.201708 ACAGATGCTCTTAGGGCTTTGAT 59.798 43.478 5.43 0.00 0.00 2.57
251 252 3.564644 CAGATGCTCTTAGGGCTTTGATG 59.435 47.826 5.43 0.00 0.00 3.07
252 253 1.755179 TGCTCTTAGGGCTTTGATGC 58.245 50.000 5.43 0.00 0.00 3.91
253 254 1.283029 TGCTCTTAGGGCTTTGATGCT 59.717 47.619 5.43 0.00 0.00 3.79
254 255 1.946081 GCTCTTAGGGCTTTGATGCTC 59.054 52.381 0.00 0.00 0.00 4.26
255 256 2.421248 GCTCTTAGGGCTTTGATGCTCT 60.421 50.000 0.00 0.00 46.73 4.09
256 257 3.204526 CTCTTAGGGCTTTGATGCTCTG 58.795 50.000 0.00 0.00 44.50 3.35
257 258 2.573462 TCTTAGGGCTTTGATGCTCTGT 59.427 45.455 0.00 0.00 44.50 3.41
258 259 2.698855 TAGGGCTTTGATGCTCTGTC 57.301 50.000 0.00 0.00 44.50 3.51
259 260 0.990374 AGGGCTTTGATGCTCTGTCT 59.010 50.000 0.00 0.00 42.99 3.41
260 261 1.093159 GGGCTTTGATGCTCTGTCTG 58.907 55.000 0.00 0.00 0.00 3.51
261 262 1.093159 GGCTTTGATGCTCTGTCTGG 58.907 55.000 0.00 0.00 0.00 3.86
262 263 1.612726 GGCTTTGATGCTCTGTCTGGT 60.613 52.381 0.00 0.00 0.00 4.00
263 264 1.736681 GCTTTGATGCTCTGTCTGGTC 59.263 52.381 0.00 0.00 0.00 4.02
264 265 2.614987 GCTTTGATGCTCTGTCTGGTCT 60.615 50.000 0.00 0.00 0.00 3.85
265 266 3.260740 CTTTGATGCTCTGTCTGGTCTC 58.739 50.000 0.00 0.00 0.00 3.36
266 267 0.813821 TGATGCTCTGTCTGGTCTCG 59.186 55.000 0.00 0.00 0.00 4.04
267 268 0.814457 GATGCTCTGTCTGGTCTCGT 59.186 55.000 0.00 0.00 0.00 4.18
268 269 1.203523 GATGCTCTGTCTGGTCTCGTT 59.796 52.381 0.00 0.00 0.00 3.85
269 270 1.040646 TGCTCTGTCTGGTCTCGTTT 58.959 50.000 0.00 0.00 0.00 3.60
270 271 1.412710 TGCTCTGTCTGGTCTCGTTTT 59.587 47.619 0.00 0.00 0.00 2.43
271 272 2.062519 GCTCTGTCTGGTCTCGTTTTC 58.937 52.381 0.00 0.00 0.00 2.29
272 273 2.678324 CTCTGTCTGGTCTCGTTTTCC 58.322 52.381 0.00 0.00 0.00 3.13
273 274 2.297597 CTCTGTCTGGTCTCGTTTTCCT 59.702 50.000 0.00 0.00 0.00 3.36
274 275 3.493334 TCTGTCTGGTCTCGTTTTCCTA 58.507 45.455 0.00 0.00 0.00 2.94
275 276 4.087182 TCTGTCTGGTCTCGTTTTCCTAT 58.913 43.478 0.00 0.00 0.00 2.57
276 277 4.158025 TCTGTCTGGTCTCGTTTTCCTATC 59.842 45.833 0.00 0.00 0.00 2.08
277 278 4.087182 TGTCTGGTCTCGTTTTCCTATCT 58.913 43.478 0.00 0.00 0.00 1.98
278 279 4.527038 TGTCTGGTCTCGTTTTCCTATCTT 59.473 41.667 0.00 0.00 0.00 2.40
279 280 5.103687 GTCTGGTCTCGTTTTCCTATCTTC 58.896 45.833 0.00 0.00 0.00 2.87
280 281 4.159879 TCTGGTCTCGTTTTCCTATCTTCC 59.840 45.833 0.00 0.00 0.00 3.46
281 282 4.094476 TGGTCTCGTTTTCCTATCTTCCT 58.906 43.478 0.00 0.00 0.00 3.36
282 283 4.159879 TGGTCTCGTTTTCCTATCTTCCTC 59.840 45.833 0.00 0.00 0.00 3.71
283 284 4.441773 GGTCTCGTTTTCCTATCTTCCTCC 60.442 50.000 0.00 0.00 0.00 4.30
284 285 3.705072 TCTCGTTTTCCTATCTTCCTCCC 59.295 47.826 0.00 0.00 0.00 4.30
285 286 2.429610 TCGTTTTCCTATCTTCCTCCCG 59.570 50.000 0.00 0.00 0.00 5.14
286 287 2.429610 CGTTTTCCTATCTTCCTCCCGA 59.570 50.000 0.00 0.00 0.00 5.14
287 288 3.118884 CGTTTTCCTATCTTCCTCCCGAA 60.119 47.826 0.00 0.00 0.00 4.30
295 296 3.468552 TTCCTCCCGAAGACAGGAA 57.531 52.632 0.00 0.00 41.02 3.36
296 297 1.724545 TTCCTCCCGAAGACAGGAAA 58.275 50.000 0.00 0.00 40.57 3.13
297 298 1.724545 TCCTCCCGAAGACAGGAAAA 58.275 50.000 0.00 0.00 33.15 2.29
298 299 1.623811 TCCTCCCGAAGACAGGAAAAG 59.376 52.381 0.00 0.00 33.15 2.27
299 300 1.443802 CTCCCGAAGACAGGAAAAGC 58.556 55.000 0.00 0.00 0.00 3.51
300 301 0.320421 TCCCGAAGACAGGAAAAGCG 60.320 55.000 0.00 0.00 0.00 4.68
301 302 0.320421 CCCGAAGACAGGAAAAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
302 303 1.676014 CCCGAAGACAGGAAAAGCGAT 60.676 52.381 0.00 0.00 0.00 4.58
303 304 2.076863 CCGAAGACAGGAAAAGCGATT 58.923 47.619 0.00 0.00 0.00 3.34
304 305 2.484264 CCGAAGACAGGAAAAGCGATTT 59.516 45.455 0.00 0.00 0.00 2.17
305 306 3.682858 CCGAAGACAGGAAAAGCGATTTA 59.317 43.478 0.00 0.00 0.00 1.40
306 307 4.201724 CCGAAGACAGGAAAAGCGATTTAG 60.202 45.833 0.00 0.00 0.00 1.85
307 308 4.653004 GAAGACAGGAAAAGCGATTTAGC 58.347 43.478 0.00 0.00 37.41 3.09
315 316 2.394604 AGCGATTTAGCTTTCCGCC 58.605 52.632 15.39 2.89 46.80 6.13
316 317 1.011131 GCGATTTAGCTTTCCGCCG 60.011 57.895 0.00 0.00 39.97 6.46
317 318 1.011131 CGATTTAGCTTTCCGCCGC 60.011 57.895 0.00 0.00 40.39 6.53
318 319 1.355563 GATTTAGCTTTCCGCCGCC 59.644 57.895 0.00 0.00 40.39 6.13
319 320 1.373590 GATTTAGCTTTCCGCCGCCA 61.374 55.000 0.00 0.00 40.39 5.69
320 321 1.376609 ATTTAGCTTTCCGCCGCCAG 61.377 55.000 0.00 0.00 40.39 4.85
321 322 3.969250 TTAGCTTTCCGCCGCCAGG 62.969 63.158 0.00 0.00 40.39 4.45
324 325 3.431725 CTTTCCGCCGCCAGGAAC 61.432 66.667 0.00 0.00 46.36 3.62
325 326 3.901797 CTTTCCGCCGCCAGGAACT 62.902 63.158 0.00 0.00 46.36 3.01
326 327 3.894547 TTTCCGCCGCCAGGAACTC 62.895 63.158 0.00 0.00 46.36 3.01
328 329 4.473520 CCGCCGCCAGGAACTCAT 62.474 66.667 0.00 0.00 41.02 2.90
329 330 3.197790 CGCCGCCAGGAACTCATG 61.198 66.667 0.00 0.00 41.02 3.07
330 331 3.512516 GCCGCCAGGAACTCATGC 61.513 66.667 0.00 0.00 41.02 4.06
331 332 2.270205 CCGCCAGGAACTCATGCT 59.730 61.111 0.00 0.00 41.02 3.79
332 333 1.817099 CCGCCAGGAACTCATGCTC 60.817 63.158 0.00 0.00 41.02 4.26
333 334 2.169789 CGCCAGGAACTCATGCTCG 61.170 63.158 0.00 0.00 34.60 5.03
334 335 1.817099 GCCAGGAACTCATGCTCGG 60.817 63.158 0.00 0.00 34.60 4.63
335 336 1.817099 CCAGGAACTCATGCTCGGC 60.817 63.158 0.00 0.00 34.60 5.54
336 337 1.817099 CAGGAACTCATGCTCGGCC 60.817 63.158 0.00 0.00 34.60 6.13
337 338 2.892425 GGAACTCATGCTCGGCCG 60.892 66.667 22.12 22.12 0.00 6.13
338 339 3.567797 GAACTCATGCTCGGCCGC 61.568 66.667 23.51 8.23 0.00 6.53
341 342 4.923942 CTCATGCTCGGCCGCCAT 62.924 66.667 23.51 21.83 0.00 4.40
342 343 4.488136 TCATGCTCGGCCGCCATT 62.488 61.111 23.51 1.88 0.00 3.16
343 344 3.957535 CATGCTCGGCCGCCATTC 61.958 66.667 23.51 7.63 0.00 2.67
344 345 4.181010 ATGCTCGGCCGCCATTCT 62.181 61.111 23.51 2.16 0.00 2.40
345 346 4.838152 TGCTCGGCCGCCATTCTC 62.838 66.667 23.51 4.23 0.00 2.87
351 352 4.508128 GCCGCCATTCTCCGTCGA 62.508 66.667 0.00 0.00 0.00 4.20
352 353 2.582498 CCGCCATTCTCCGTCGAC 60.582 66.667 5.18 5.18 0.00 4.20
353 354 2.949678 CGCCATTCTCCGTCGACG 60.950 66.667 30.33 30.33 39.44 5.12
354 355 2.488355 GCCATTCTCCGTCGACGA 59.512 61.111 37.65 22.12 43.02 4.20
355 356 1.872679 GCCATTCTCCGTCGACGAC 60.873 63.158 37.65 18.04 43.02 4.34
356 357 1.226603 CCATTCTCCGTCGACGACC 60.227 63.158 37.65 0.00 43.02 4.79
357 358 1.654954 CCATTCTCCGTCGACGACCT 61.655 60.000 37.65 15.05 43.02 3.85
358 359 0.248134 CATTCTCCGTCGACGACCTC 60.248 60.000 37.65 0.00 43.02 3.85
359 360 1.703438 ATTCTCCGTCGACGACCTCG 61.703 60.000 37.65 20.96 44.44 4.63
360 361 3.862402 CTCCGTCGACGACCTCGG 61.862 72.222 37.65 20.86 43.16 4.63
361 362 4.687215 TCCGTCGACGACCTCGGT 62.687 66.667 37.65 0.00 43.16 4.69
362 363 4.157958 CCGTCGACGACCTCGGTC 62.158 72.222 37.65 6.01 43.16 4.79
370 371 2.567049 GACCTCGGTCGTCAGTGG 59.433 66.667 0.00 0.08 35.30 4.00
371 372 2.203451 ACCTCGGTCGTCAGTGGT 60.203 61.111 1.27 1.27 32.57 4.16
372 373 2.258591 CCTCGGTCGTCAGTGGTG 59.741 66.667 0.00 0.00 0.00 4.17
373 374 2.265904 CCTCGGTCGTCAGTGGTGA 61.266 63.158 0.00 0.00 0.00 4.02
374 375 1.210413 CTCGGTCGTCAGTGGTGAG 59.790 63.158 0.00 0.00 31.53 3.51
375 376 2.201436 CTCGGTCGTCAGTGGTGAGG 62.201 65.000 0.00 0.00 39.51 3.86
376 377 2.657237 GGTCGTCAGTGGTGAGGG 59.343 66.667 0.00 0.00 38.80 4.30
377 378 2.657237 GTCGTCAGTGGTGAGGGG 59.343 66.667 0.00 0.00 38.80 4.79
378 379 2.603473 TCGTCAGTGGTGAGGGGG 60.603 66.667 0.00 0.00 38.80 5.40
379 380 2.923035 CGTCAGTGGTGAGGGGGT 60.923 66.667 0.00 0.00 35.33 4.95
380 381 2.943978 CGTCAGTGGTGAGGGGGTC 61.944 68.421 0.00 0.00 35.33 4.46
381 382 1.841556 GTCAGTGGTGAGGGGGTCA 60.842 63.158 0.00 0.00 31.53 4.02
382 383 1.160870 TCAGTGGTGAGGGGGTCAT 59.839 57.895 0.00 0.00 37.56 3.06
383 384 0.909610 TCAGTGGTGAGGGGGTCATC 60.910 60.000 0.00 0.00 37.56 2.92
384 385 1.990060 AGTGGTGAGGGGGTCATCG 60.990 63.158 0.00 0.00 39.46 3.84
385 386 2.121832 TGGTGAGGGGGTCATCGT 59.878 61.111 0.00 0.00 39.46 3.73
386 387 0.974010 GTGGTGAGGGGGTCATCGTA 60.974 60.000 0.00 0.00 39.46 3.43
387 388 0.031515 TGGTGAGGGGGTCATCGTAT 60.032 55.000 0.00 0.00 39.46 3.06
388 389 0.680061 GGTGAGGGGGTCATCGTATC 59.320 60.000 0.00 0.00 37.56 2.24
389 390 0.680061 GTGAGGGGGTCATCGTATCC 59.320 60.000 0.00 0.00 37.56 2.59
390 391 0.263468 TGAGGGGGTCATCGTATCCA 59.737 55.000 0.00 0.00 0.00 3.41
391 392 1.132849 TGAGGGGGTCATCGTATCCAT 60.133 52.381 0.00 0.00 0.00 3.41
392 393 1.276421 GAGGGGGTCATCGTATCCATG 59.724 57.143 0.00 0.00 0.00 3.66
393 394 0.321653 GGGGGTCATCGTATCCATGC 60.322 60.000 0.00 0.00 0.00 4.06
394 395 0.670546 GGGGTCATCGTATCCATGCG 60.671 60.000 0.00 0.00 37.23 4.73
395 396 0.033504 GGGTCATCGTATCCATGCGT 59.966 55.000 0.00 0.00 37.19 5.24
396 397 1.139989 GGTCATCGTATCCATGCGTG 58.860 55.000 0.00 0.00 37.19 5.34
397 398 1.538204 GGTCATCGTATCCATGCGTGT 60.538 52.381 4.96 0.00 37.19 4.49
398 399 1.522676 GTCATCGTATCCATGCGTGTG 59.477 52.381 4.96 0.00 37.19 3.82
399 400 0.861185 CATCGTATCCATGCGTGTGG 59.139 55.000 4.96 0.40 40.76 4.17
406 407 2.779755 TCCATGCGTGTGGATAGTTT 57.220 45.000 4.96 0.00 43.20 2.66
407 408 3.066291 TCCATGCGTGTGGATAGTTTT 57.934 42.857 4.96 0.00 43.20 2.43
408 409 4.209307 TCCATGCGTGTGGATAGTTTTA 57.791 40.909 4.96 0.00 43.20 1.52
409 410 4.188462 TCCATGCGTGTGGATAGTTTTAG 58.812 43.478 4.96 0.00 43.20 1.85
410 411 3.312421 CCATGCGTGTGGATAGTTTTAGG 59.688 47.826 4.96 0.00 42.02 2.69
411 412 2.352388 TGCGTGTGGATAGTTTTAGGC 58.648 47.619 0.00 0.00 0.00 3.93
412 413 1.669265 GCGTGTGGATAGTTTTAGGCC 59.331 52.381 0.00 0.00 0.00 5.19
413 414 2.937873 GCGTGTGGATAGTTTTAGGCCA 60.938 50.000 5.01 0.00 0.00 5.36
414 415 3.340034 CGTGTGGATAGTTTTAGGCCAA 58.660 45.455 5.01 0.00 0.00 4.52
415 416 3.754323 CGTGTGGATAGTTTTAGGCCAAA 59.246 43.478 5.01 0.17 0.00 3.28
416 417 4.142687 CGTGTGGATAGTTTTAGGCCAAAG 60.143 45.833 5.01 0.00 0.00 2.77
417 418 4.765339 GTGTGGATAGTTTTAGGCCAAAGT 59.235 41.667 5.01 3.02 0.00 2.66
418 419 5.941647 GTGTGGATAGTTTTAGGCCAAAGTA 59.058 40.000 5.01 5.49 0.00 2.24
419 420 6.093633 GTGTGGATAGTTTTAGGCCAAAGTAG 59.906 42.308 5.01 0.00 0.00 2.57
420 421 5.066117 GTGGATAGTTTTAGGCCAAAGTAGC 59.934 44.000 5.01 7.80 30.35 3.58
421 422 5.045140 TGGATAGTTTTAGGCCAAAGTAGCT 60.045 40.000 5.01 0.00 31.40 3.32
422 423 5.886474 GGATAGTTTTAGGCCAAAGTAGCTT 59.114 40.000 5.01 0.00 31.40 3.74
423 424 7.052248 GGATAGTTTTAGGCCAAAGTAGCTTA 58.948 38.462 5.01 0.00 31.40 3.09
424 425 7.226918 GGATAGTTTTAGGCCAAAGTAGCTTAG 59.773 40.741 5.01 0.00 31.40 2.18
425 426 5.877491 AGTTTTAGGCCAAAGTAGCTTAGT 58.123 37.500 5.01 0.00 0.00 2.24
426 427 6.304624 AGTTTTAGGCCAAAGTAGCTTAGTT 58.695 36.000 5.01 0.00 0.00 2.24
427 428 6.430308 AGTTTTAGGCCAAAGTAGCTTAGTTC 59.570 38.462 5.01 0.00 0.00 3.01
428 429 5.757099 TTAGGCCAAAGTAGCTTAGTTCT 57.243 39.130 5.01 0.00 0.00 3.01
429 430 4.642466 AGGCCAAAGTAGCTTAGTTCTT 57.358 40.909 5.01 0.00 0.00 2.52
430 431 4.986783 AGGCCAAAGTAGCTTAGTTCTTT 58.013 39.130 5.01 0.00 0.00 2.52
431 432 4.762251 AGGCCAAAGTAGCTTAGTTCTTTG 59.238 41.667 5.01 6.33 43.30 2.77
435 436 6.635030 CAAAGTAGCTTAGTTCTTTGGGTT 57.365 37.500 0.00 0.00 41.36 4.11
436 437 6.438763 CAAAGTAGCTTAGTTCTTTGGGTTG 58.561 40.000 0.00 0.00 41.36 3.77
437 438 5.306114 AGTAGCTTAGTTCTTTGGGTTGT 57.694 39.130 0.00 0.00 0.00 3.32
438 439 5.691896 AGTAGCTTAGTTCTTTGGGTTGTT 58.308 37.500 0.00 0.00 0.00 2.83
439 440 5.763698 AGTAGCTTAGTTCTTTGGGTTGTTC 59.236 40.000 0.00 0.00 0.00 3.18
440 441 4.532834 AGCTTAGTTCTTTGGGTTGTTCA 58.467 39.130 0.00 0.00 0.00 3.18
441 442 5.140454 AGCTTAGTTCTTTGGGTTGTTCAT 58.860 37.500 0.00 0.00 0.00 2.57
442 443 5.241728 AGCTTAGTTCTTTGGGTTGTTCATC 59.758 40.000 0.00 0.00 0.00 2.92
443 444 5.682943 TTAGTTCTTTGGGTTGTTCATCG 57.317 39.130 0.00 0.00 0.00 3.84
444 445 3.551846 AGTTCTTTGGGTTGTTCATCGT 58.448 40.909 0.00 0.00 0.00 3.73
445 446 3.564225 AGTTCTTTGGGTTGTTCATCGTC 59.436 43.478 0.00 0.00 0.00 4.20
446 447 3.485463 TCTTTGGGTTGTTCATCGTCT 57.515 42.857 0.00 0.00 0.00 4.18
447 448 3.815809 TCTTTGGGTTGTTCATCGTCTT 58.184 40.909 0.00 0.00 0.00 3.01
448 449 4.204012 TCTTTGGGTTGTTCATCGTCTTT 58.796 39.130 0.00 0.00 0.00 2.52
542 549 4.344865 GCCACTTCCGGGAAGGCA 62.345 66.667 33.73 3.85 43.25 4.75
717 733 1.740296 GGCGCCGTAGAAGAAGCAA 60.740 57.895 12.58 0.00 0.00 3.91
726 742 5.005875 GCCGTAGAAGAAGCAAGATAAGAAC 59.994 44.000 0.00 0.00 0.00 3.01
773 789 3.120105 CGCGGCATCTCTCCACTA 58.880 61.111 0.00 0.00 0.00 2.74
816 833 1.618888 GGAAGCCCTAACCTTTTCCCC 60.619 57.143 0.00 0.00 32.93 4.81
873 890 3.117851 CCCCCTCTTTTCACTAGGAATCC 60.118 52.174 0.00 0.00 34.91 3.01
965 982 2.096819 TCGAATTAATCTTTGCCGTGGC 59.903 45.455 3.30 3.30 42.35 5.01
1090 1107 3.427573 TCCAAGATGAACTACCACGAGA 58.572 45.455 0.00 0.00 0.00 4.04
1092 1109 4.466370 TCCAAGATGAACTACCACGAGAAT 59.534 41.667 0.00 0.00 0.00 2.40
1098 1115 3.244078 TGAACTACCACGAGAATTGCAGT 60.244 43.478 0.00 0.00 0.00 4.40
1100 1117 2.563179 ACTACCACGAGAATTGCAGTCT 59.437 45.455 1.82 1.82 0.00 3.24
1102 1119 2.417719 ACCACGAGAATTGCAGTCTTC 58.582 47.619 3.72 1.32 0.00 2.87
1108 1125 4.327357 ACGAGAATTGCAGTCTTCAATACG 59.673 41.667 13.19 13.19 34.09 3.06
1168 1185 2.273619 AGGAGAAGGTGGAGCAAGAAT 58.726 47.619 0.00 0.00 0.00 2.40
1307 1325 0.248215 GCCATCAAATCGAACAGCCG 60.248 55.000 0.00 0.00 0.00 5.52
1374 1392 1.063942 AGCCCCCAAATAGTTACCAGC 60.064 52.381 0.00 0.00 0.00 4.85
1385 1403 1.485066 AGTTACCAGCCAATCCTACCG 59.515 52.381 0.00 0.00 0.00 4.02
1456 1474 3.354089 AAACTGTGCATTGGTCGAAAG 57.646 42.857 0.00 0.00 0.00 2.62
1488 1506 5.862811 GCACTTGCACTAGTGATAAGAAAG 58.137 41.667 30.74 23.27 46.72 2.62
1509 1527 2.575532 CCGTGGCATCATTCTTACCAT 58.424 47.619 0.00 0.00 31.99 3.55
1510 1528 2.549754 CCGTGGCATCATTCTTACCATC 59.450 50.000 0.00 0.00 31.99 3.51
1541 1559 0.524862 CATGGACAGCAAGGCTTCAC 59.475 55.000 0.00 0.00 36.40 3.18
1570 1588 0.248702 GCGAAGGAGGAGCTCGTTAG 60.249 60.000 10.79 1.96 38.46 2.34
1637 1655 0.183492 TCCAAGCAAGTGAGGCAAGT 59.817 50.000 0.00 0.00 0.00 3.16
1926 2006 1.672356 CCTTGTTGGCTCCCTCGTG 60.672 63.158 0.00 0.00 0.00 4.35
2204 2284 2.066999 GGGTTCCCGATCTGCTCCT 61.067 63.158 0.00 0.00 0.00 3.69
2231 2312 7.646130 GTGTGAAATTTCGTGAAAAATACCAGA 59.354 33.333 13.34 0.00 33.56 3.86
2324 2407 2.741878 CGGACAGTATTTCCTTCGCCAT 60.742 50.000 0.00 0.00 0.00 4.40
2378 2461 3.632333 TCACACGGGAGTAGATTGAGAT 58.368 45.455 0.00 0.00 44.67 2.75
2409 2492 7.882791 GGTTTGATATCCCCAAATTTCAGTTTT 59.117 33.333 0.00 0.00 36.14 2.43
2505 2601 1.273327 CCGGCCATTCTCTTGCTTTTT 59.727 47.619 2.24 0.00 0.00 1.94
2537 2633 1.563924 ACTTACCCCGCTACATCACA 58.436 50.000 0.00 0.00 0.00 3.58
2794 2890 2.831685 ACTACACGCATTCCTGTCAA 57.168 45.000 0.00 0.00 0.00 3.18
2811 2907 3.438781 TGTCAAACCATGCGGAAGATTAC 59.561 43.478 0.00 0.00 35.59 1.89
2951 3047 2.704572 CATGCCTTCGGAAGTTTCTCT 58.295 47.619 16.07 0.00 0.00 3.10
3019 3115 0.035630 AGCAGCTCATGAACCCAGAC 60.036 55.000 0.00 0.00 0.00 3.51
3065 3161 4.803329 ATTGGAGGCATTTCTGAGGTAT 57.197 40.909 0.00 0.00 0.00 2.73
3079 3175 3.930336 TGAGGTATGCTGAGTTCTTGTG 58.070 45.455 0.00 0.00 0.00 3.33
3224 3320 1.628846 GGGGAAGAGTCTTACAAGGCA 59.371 52.381 17.06 0.00 31.65 4.75
3416 3512 1.153881 GACCTCGACTTGCGGGTAC 60.154 63.158 0.00 0.00 41.53 3.34
3515 3612 5.357596 TGATTCGATTGGAGCATTGAAATCA 59.642 36.000 0.00 0.00 0.00 2.57
3574 3673 5.894393 TGAAACAAAAATCCTACTGGTCCAA 59.106 36.000 0.00 0.00 34.23 3.53
3576 3675 5.982890 ACAAAAATCCTACTGGTCCAATG 57.017 39.130 0.00 0.00 34.23 2.82
3661 4736 5.840149 ACTTGGTTGGGTGTATATATACCGA 59.160 40.000 19.13 14.32 38.24 4.69
3673 4749 9.924650 GTGTATATATACCGAGAAATGGACTTT 57.075 33.333 18.20 0.00 32.33 2.66
3702 4778 8.687824 ATGCATGCAAACTTTGTTATAACTAC 57.312 30.769 26.68 0.00 0.00 2.73
3703 4779 7.881142 TGCATGCAAACTTTGTTATAACTACT 58.119 30.769 20.30 0.00 0.00 2.57
3704 4780 7.807433 TGCATGCAAACTTTGTTATAACTACTG 59.193 33.333 20.30 7.27 0.00 2.74
3705 4781 7.807907 GCATGCAAACTTTGTTATAACTACTGT 59.192 33.333 14.21 7.83 0.00 3.55
3802 4878 3.575630 GACGAGCATGAAGACACTAACA 58.424 45.455 0.00 0.00 0.00 2.41
3826 4902 7.068226 ACAAAAAGAATAGGTGCTGTACTTTGT 59.932 33.333 0.00 0.17 0.00 2.83
3942 5018 5.004922 TCAACTGAAATTTTGGTGTCCAC 57.995 39.130 9.11 0.00 30.78 4.02
3995 5071 3.146104 AGTGCCTTAGTTGATGCTGTT 57.854 42.857 0.00 0.00 0.00 3.16
4000 5076 4.395854 TGCCTTAGTTGATGCTGTTGTATG 59.604 41.667 0.00 0.00 0.00 2.39
4060 5136 9.074443 CACCATGCCAATTTTATTTTAAATTGC 57.926 29.630 13.57 10.58 46.62 3.56
4144 5220 5.235401 GGTGAAGAACTGAAGACTGAAGAAC 59.765 44.000 0.00 0.00 0.00 3.01
4146 5222 5.129485 TGAAGAACTGAAGACTGAAGAACCT 59.871 40.000 0.00 0.00 0.00 3.50
4280 5356 3.555956 CCGTTTCGAACCATCTAGAATGG 59.444 47.826 15.59 15.59 44.54 3.16
4300 5386 1.130561 GCCTTGTACTCGGCATGTTTC 59.869 52.381 17.52 0.00 45.59 2.78
4403 5512 9.003658 GCATAACAGTAAACCTGAATAGCATAT 57.996 33.333 0.00 0.00 44.49 1.78
4409 5518 9.862371 CAGTAAACCTGAATAGCATATACTAGG 57.138 37.037 0.00 0.00 44.49 3.02
4410 5519 9.824216 AGTAAACCTGAATAGCATATACTAGGA 57.176 33.333 0.00 0.00 0.00 2.94
4413 5522 8.671987 AACCTGAATAGCATATACTAGGATGT 57.328 34.615 0.00 0.00 0.00 3.06
4414 5523 8.072321 ACCTGAATAGCATATACTAGGATGTG 57.928 38.462 7.32 7.32 0.00 3.21
4416 5525 6.564328 TGAATAGCATATACTAGGATGTGCG 58.436 40.000 25.71 0.00 45.61 5.34
4443 5644 4.481930 TTGGACGACTATTTGTTGCAAG 57.518 40.909 0.00 0.00 33.33 4.01
4516 5717 2.096248 TGTGGTGTTTTCCTTTTCGCT 58.904 42.857 0.00 0.00 0.00 4.93
4538 5739 0.550914 AGTTTTGCCTGTCCCTGTCA 59.449 50.000 0.00 0.00 0.00 3.58
4590 5791 2.162608 TCGTGTTTGTCAAAGTGGTTGG 59.837 45.455 0.00 0.00 37.85 3.77
4652 5853 1.867363 ACTTCTGGGTATTCGGCTCT 58.133 50.000 0.00 0.00 0.00 4.09
4783 5988 6.577638 GCCCCCTGTCTTTCTAGTACAATTTA 60.578 42.308 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.665675 AAGAGGGACATCCACGCGC 62.666 63.158 5.73 0.00 38.24 6.86
20 21 1.811266 CAAGAGGGACATCCACGCG 60.811 63.158 3.53 3.53 38.24 6.01
21 22 0.321653 AACAAGAGGGACATCCACGC 60.322 55.000 0.00 0.00 38.24 5.34
22 23 1.276421 AGAACAAGAGGGACATCCACG 59.724 52.381 0.00 0.00 38.24 4.94
23 24 2.303022 TGAGAACAAGAGGGACATCCAC 59.697 50.000 0.00 0.00 38.24 4.02
24 25 2.619931 TGAGAACAAGAGGGACATCCA 58.380 47.619 0.00 0.00 38.24 3.41
25 26 3.539604 CATGAGAACAAGAGGGACATCC 58.460 50.000 0.00 0.00 0.00 3.51
26 27 2.941720 GCATGAGAACAAGAGGGACATC 59.058 50.000 0.00 0.00 0.00 3.06
27 28 2.575279 AGCATGAGAACAAGAGGGACAT 59.425 45.455 0.00 0.00 0.00 3.06
28 29 1.980765 AGCATGAGAACAAGAGGGACA 59.019 47.619 0.00 0.00 0.00 4.02
29 30 2.027745 TGAGCATGAGAACAAGAGGGAC 60.028 50.000 0.00 0.00 0.00 4.46
30 31 2.259917 TGAGCATGAGAACAAGAGGGA 58.740 47.619 0.00 0.00 0.00 4.20
31 32 2.775911 TGAGCATGAGAACAAGAGGG 57.224 50.000 0.00 0.00 0.00 4.30
32 33 4.763073 TGTATGAGCATGAGAACAAGAGG 58.237 43.478 0.00 0.00 0.00 3.69
33 34 5.873712 ACTTGTATGAGCATGAGAACAAGAG 59.126 40.000 21.53 6.24 44.03 2.85
34 35 5.640783 CACTTGTATGAGCATGAGAACAAGA 59.359 40.000 21.53 0.00 44.03 3.02
35 36 5.163784 CCACTTGTATGAGCATGAGAACAAG 60.164 44.000 16.47 16.47 45.76 3.16
36 37 4.696877 CCACTTGTATGAGCATGAGAACAA 59.303 41.667 0.00 0.00 0.00 2.83
37 38 4.256110 CCACTTGTATGAGCATGAGAACA 58.744 43.478 0.00 0.00 0.00 3.18
38 39 3.624861 CCCACTTGTATGAGCATGAGAAC 59.375 47.826 0.00 0.00 0.00 3.01
39 40 3.370846 CCCCACTTGTATGAGCATGAGAA 60.371 47.826 0.00 0.00 0.00 2.87
40 41 2.171237 CCCCACTTGTATGAGCATGAGA 59.829 50.000 0.00 0.00 0.00 3.27
41 42 2.171237 TCCCCACTTGTATGAGCATGAG 59.829 50.000 0.00 0.00 0.00 2.90
42 43 2.195727 TCCCCACTTGTATGAGCATGA 58.804 47.619 0.00 0.00 0.00 3.07
43 44 2.715749 TCCCCACTTGTATGAGCATG 57.284 50.000 0.00 0.00 0.00 4.06
44 45 2.092212 CCTTCCCCACTTGTATGAGCAT 60.092 50.000 0.00 0.00 0.00 3.79
45 46 1.281867 CCTTCCCCACTTGTATGAGCA 59.718 52.381 0.00 0.00 0.00 4.26
46 47 1.559682 TCCTTCCCCACTTGTATGAGC 59.440 52.381 0.00 0.00 0.00 4.26
47 48 2.420687 GCTCCTTCCCCACTTGTATGAG 60.421 54.545 0.00 0.00 0.00 2.90
48 49 1.559682 GCTCCTTCCCCACTTGTATGA 59.440 52.381 0.00 0.00 0.00 2.15
49 50 1.408822 GGCTCCTTCCCCACTTGTATG 60.409 57.143 0.00 0.00 0.00 2.39
50 51 0.919710 GGCTCCTTCCCCACTTGTAT 59.080 55.000 0.00 0.00 0.00 2.29
51 52 0.178873 AGGCTCCTTCCCCACTTGTA 60.179 55.000 0.00 0.00 0.00 2.41
52 53 1.464198 AGGCTCCTTCCCCACTTGT 60.464 57.895 0.00 0.00 0.00 3.16
53 54 1.301293 GAGGCTCCTTCCCCACTTG 59.699 63.158 2.15 0.00 0.00 3.16
54 55 1.925972 GGAGGCTCCTTCCCCACTT 60.926 63.158 26.44 0.00 32.53 3.16
55 56 2.285743 GGAGGCTCCTTCCCCACT 60.286 66.667 26.44 0.00 32.53 4.00
56 57 3.412408 GGGAGGCTCCTTCCCCAC 61.412 72.222 31.39 10.61 35.65 4.61
57 58 1.833055 TAAGGGAGGCTCCTTCCCCA 61.833 60.000 31.39 9.06 45.22 4.96
58 59 0.402126 ATAAGGGAGGCTCCTTCCCC 60.402 60.000 31.39 16.54 45.22 4.81
59 60 2.417719 TATAAGGGAGGCTCCTTCCC 57.582 55.000 31.39 17.15 45.22 3.97
60 61 3.974642 TCTTTATAAGGGAGGCTCCTTCC 59.025 47.826 31.39 16.23 45.22 3.46
61 62 4.041075 CCTCTTTATAAGGGAGGCTCCTTC 59.959 50.000 31.39 16.97 45.22 3.46
63 64 3.592865 CCTCTTTATAAGGGAGGCTCCT 58.407 50.000 31.39 16.58 39.87 3.69
69 70 5.163290 GGAGTTGGACCTCTTTATAAGGGAG 60.163 48.000 9.31 9.31 38.29 4.30
70 71 4.720273 GGAGTTGGACCTCTTTATAAGGGA 59.280 45.833 7.80 0.80 38.29 4.20
71 72 4.141459 GGGAGTTGGACCTCTTTATAAGGG 60.141 50.000 0.00 0.00 38.29 3.95
72 73 4.722279 AGGGAGTTGGACCTCTTTATAAGG 59.278 45.833 0.00 0.00 39.96 2.69
73 74 5.959583 AGGGAGTTGGACCTCTTTATAAG 57.040 43.478 0.00 0.00 28.88 1.73
82 83 3.277416 AGTTTAGAGGGAGTTGGACCT 57.723 47.619 0.00 0.00 40.54 3.85
83 84 3.118702 GCTAGTTTAGAGGGAGTTGGACC 60.119 52.174 0.00 0.00 0.00 4.46
84 85 3.514309 TGCTAGTTTAGAGGGAGTTGGAC 59.486 47.826 0.00 0.00 0.00 4.02
85 86 3.786553 TGCTAGTTTAGAGGGAGTTGGA 58.213 45.455 0.00 0.00 0.00 3.53
86 87 4.508662 CTTGCTAGTTTAGAGGGAGTTGG 58.491 47.826 0.00 0.00 0.00 3.77
87 88 4.020128 ACCTTGCTAGTTTAGAGGGAGTTG 60.020 45.833 0.00 0.00 0.00 3.16
88 89 4.020128 CACCTTGCTAGTTTAGAGGGAGTT 60.020 45.833 0.00 0.00 0.00 3.01
89 90 3.515901 CACCTTGCTAGTTTAGAGGGAGT 59.484 47.826 0.00 0.00 0.00 3.85
90 91 3.118592 CCACCTTGCTAGTTTAGAGGGAG 60.119 52.174 0.00 0.00 0.00 4.30
91 92 2.838202 CCACCTTGCTAGTTTAGAGGGA 59.162 50.000 0.00 0.00 0.00 4.20
92 93 2.092914 CCCACCTTGCTAGTTTAGAGGG 60.093 54.545 0.00 0.00 0.00 4.30
93 94 2.838202 TCCCACCTTGCTAGTTTAGAGG 59.162 50.000 0.00 0.00 0.00 3.69
94 95 3.515901 AGTCCCACCTTGCTAGTTTAGAG 59.484 47.826 0.00 0.00 0.00 2.43
95 96 3.517612 AGTCCCACCTTGCTAGTTTAGA 58.482 45.455 0.00 0.00 0.00 2.10
96 97 3.983044 AGTCCCACCTTGCTAGTTTAG 57.017 47.619 0.00 0.00 0.00 1.85
97 98 5.308759 AGTTTAGTCCCACCTTGCTAGTTTA 59.691 40.000 0.00 0.00 0.00 2.01
98 99 4.104261 AGTTTAGTCCCACCTTGCTAGTTT 59.896 41.667 0.00 0.00 0.00 2.66
99 100 3.651423 AGTTTAGTCCCACCTTGCTAGTT 59.349 43.478 0.00 0.00 0.00 2.24
100 101 3.248888 AGTTTAGTCCCACCTTGCTAGT 58.751 45.455 0.00 0.00 0.00 2.57
101 102 3.983044 AGTTTAGTCCCACCTTGCTAG 57.017 47.619 0.00 0.00 0.00 3.42
102 103 4.717279 AAAGTTTAGTCCCACCTTGCTA 57.283 40.909 0.00 0.00 0.00 3.49
103 104 3.595190 AAAGTTTAGTCCCACCTTGCT 57.405 42.857 0.00 0.00 0.00 3.91
104 105 4.395625 ACTAAAGTTTAGTCCCACCTTGC 58.604 43.478 20.34 0.00 0.00 4.01
105 106 5.472478 GGAACTAAAGTTTAGTCCCACCTTG 59.528 44.000 22.37 0.00 38.56 3.61
106 107 5.133153 TGGAACTAAAGTTTAGTCCCACCTT 59.867 40.000 25.17 10.78 38.56 3.50
107 108 4.661709 TGGAACTAAAGTTTAGTCCCACCT 59.338 41.667 25.17 11.42 38.56 4.00
108 109 4.758674 GTGGAACTAAAGTTTAGTCCCACC 59.241 45.833 36.33 28.05 39.77 4.61
109 110 4.758674 GGTGGAACTAAAGTTTAGTCCCAC 59.241 45.833 37.49 37.49 42.44 4.61
110 111 4.661709 AGGTGGAACTAAAGTTTAGTCCCA 59.338 41.667 25.17 25.17 38.56 4.37
111 112 5.012871 AGAGGTGGAACTAAAGTTTAGTCCC 59.987 44.000 24.84 22.90 38.56 4.46
112 113 6.111669 AGAGGTGGAACTAAAGTTTAGTCC 57.888 41.667 24.84 24.10 38.56 3.85
113 114 7.601886 GGTAAGAGGTGGAACTAAAGTTTAGTC 59.398 40.741 24.84 18.02 38.56 2.59
114 115 7.291885 AGGTAAGAGGTGGAACTAAAGTTTAGT 59.708 37.037 20.34 20.34 38.56 2.24
115 116 7.677892 AGGTAAGAGGTGGAACTAAAGTTTAG 58.322 38.462 19.07 19.07 38.56 1.85
116 117 7.622502 AGGTAAGAGGTGGAACTAAAGTTTA 57.377 36.000 0.00 0.00 38.56 2.01
117 118 6.511017 AGGTAAGAGGTGGAACTAAAGTTT 57.489 37.500 0.00 0.00 38.56 2.66
118 119 6.296803 CAAGGTAAGAGGTGGAACTAAAGTT 58.703 40.000 0.00 0.00 41.64 2.66
119 120 5.745181 GCAAGGTAAGAGGTGGAACTAAAGT 60.745 44.000 0.00 0.00 36.74 2.66
120 121 4.695928 GCAAGGTAAGAGGTGGAACTAAAG 59.304 45.833 0.00 0.00 36.74 1.85
121 122 4.103469 TGCAAGGTAAGAGGTGGAACTAAA 59.897 41.667 0.00 0.00 36.74 1.85
122 123 3.649023 TGCAAGGTAAGAGGTGGAACTAA 59.351 43.478 0.00 0.00 36.74 2.24
123 124 3.007614 GTGCAAGGTAAGAGGTGGAACTA 59.992 47.826 0.00 0.00 36.74 2.24
124 125 2.054799 TGCAAGGTAAGAGGTGGAACT 58.945 47.619 0.00 0.00 36.74 3.01
125 126 2.152016 GTGCAAGGTAAGAGGTGGAAC 58.848 52.381 0.00 0.00 0.00 3.62
126 127 1.771854 TGTGCAAGGTAAGAGGTGGAA 59.228 47.619 0.00 0.00 0.00 3.53
127 128 1.429930 TGTGCAAGGTAAGAGGTGGA 58.570 50.000 0.00 0.00 0.00 4.02
128 129 2.270352 TTGTGCAAGGTAAGAGGTGG 57.730 50.000 0.00 0.00 0.00 4.61
129 130 3.057315 CCATTTGTGCAAGGTAAGAGGTG 60.057 47.826 0.00 0.00 0.00 4.00
130 131 3.157087 CCATTTGTGCAAGGTAAGAGGT 58.843 45.455 0.00 0.00 0.00 3.85
131 132 2.493278 CCCATTTGTGCAAGGTAAGAGG 59.507 50.000 0.00 0.00 0.00 3.69
132 133 2.094545 GCCCATTTGTGCAAGGTAAGAG 60.095 50.000 0.00 0.00 0.00 2.85
133 134 1.892474 GCCCATTTGTGCAAGGTAAGA 59.108 47.619 0.00 0.00 0.00 2.10
134 135 1.895131 AGCCCATTTGTGCAAGGTAAG 59.105 47.619 0.00 0.00 0.00 2.34
135 136 1.617850 CAGCCCATTTGTGCAAGGTAA 59.382 47.619 0.00 0.00 0.00 2.85
136 137 1.255882 CAGCCCATTTGTGCAAGGTA 58.744 50.000 0.00 0.00 0.00 3.08
137 138 2.051941 CAGCCCATTTGTGCAAGGT 58.948 52.632 0.00 0.00 0.00 3.50
138 139 1.375013 GCAGCCCATTTGTGCAAGG 60.375 57.895 0.00 0.00 37.16 3.61
139 140 1.735198 CGCAGCCCATTTGTGCAAG 60.735 57.895 0.00 0.00 37.01 4.01
140 141 2.339348 CGCAGCCCATTTGTGCAA 59.661 55.556 0.00 0.00 37.01 4.08
141 142 2.911509 ACGCAGCCCATTTGTGCA 60.912 55.556 0.00 0.00 37.01 4.57
142 143 2.431260 CACGCAGCCCATTTGTGC 60.431 61.111 0.00 0.00 0.00 4.57
143 144 2.259204 CCACGCAGCCCATTTGTG 59.741 61.111 0.00 0.00 0.00 3.33
144 145 2.990967 CCCACGCAGCCCATTTGT 60.991 61.111 0.00 0.00 0.00 2.83
145 146 4.440127 GCCCACGCAGCCCATTTG 62.440 66.667 0.00 0.00 34.03 2.32
152 153 4.537433 CCTAGAGGCCCACGCAGC 62.537 72.222 0.00 0.00 36.38 5.25
153 154 1.690219 AATCCTAGAGGCCCACGCAG 61.690 60.000 0.00 0.00 36.38 5.18
154 155 1.271840 AAATCCTAGAGGCCCACGCA 61.272 55.000 0.00 0.00 36.38 5.24
155 156 0.756903 TAAATCCTAGAGGCCCACGC 59.243 55.000 0.00 0.00 34.44 5.34
156 157 3.771577 AATAAATCCTAGAGGCCCACG 57.228 47.619 0.00 0.00 34.44 4.94
157 158 4.844655 TCCTAATAAATCCTAGAGGCCCAC 59.155 45.833 0.00 0.00 34.44 4.61
158 159 5.101254 TCCTAATAAATCCTAGAGGCCCA 57.899 43.478 0.00 0.00 34.44 5.36
159 160 6.644308 ATTCCTAATAAATCCTAGAGGCCC 57.356 41.667 0.00 0.00 34.44 5.80
160 161 8.387039 AGAAATTCCTAATAAATCCTAGAGGCC 58.613 37.037 0.00 0.00 34.44 5.19
161 162 9.225436 CAGAAATTCCTAATAAATCCTAGAGGC 57.775 37.037 0.00 0.00 34.44 4.70
175 176 9.681062 CCCAATAGTAGTTTCAGAAATTCCTAA 57.319 33.333 0.00 0.00 0.00 2.69
176 177 7.773690 GCCCAATAGTAGTTTCAGAAATTCCTA 59.226 37.037 0.00 0.00 0.00 2.94
177 178 6.603599 GCCCAATAGTAGTTTCAGAAATTCCT 59.396 38.462 0.00 0.00 0.00 3.36
178 179 6.603599 AGCCCAATAGTAGTTTCAGAAATTCC 59.396 38.462 0.00 0.00 0.00 3.01
179 180 7.631717 AGCCCAATAGTAGTTTCAGAAATTC 57.368 36.000 0.00 0.00 0.00 2.17
180 181 7.775561 CCTAGCCCAATAGTAGTTTCAGAAATT 59.224 37.037 0.00 0.00 0.00 1.82
181 182 7.092399 ACCTAGCCCAATAGTAGTTTCAGAAAT 60.092 37.037 0.00 0.00 0.00 2.17
182 183 6.214819 ACCTAGCCCAATAGTAGTTTCAGAAA 59.785 38.462 0.00 0.00 0.00 2.52
183 184 5.724854 ACCTAGCCCAATAGTAGTTTCAGAA 59.275 40.000 0.00 0.00 0.00 3.02
184 185 5.278061 ACCTAGCCCAATAGTAGTTTCAGA 58.722 41.667 0.00 0.00 0.00 3.27
185 186 5.364157 AGACCTAGCCCAATAGTAGTTTCAG 59.636 44.000 0.00 0.00 0.00 3.02
186 187 5.278061 AGACCTAGCCCAATAGTAGTTTCA 58.722 41.667 0.00 0.00 0.00 2.69
187 188 5.873146 AGACCTAGCCCAATAGTAGTTTC 57.127 43.478 0.00 0.00 0.00 2.78
188 189 7.744678 TTTAGACCTAGCCCAATAGTAGTTT 57.255 36.000 0.00 0.00 0.00 2.66
189 190 7.932683 ATTTAGACCTAGCCCAATAGTAGTT 57.067 36.000 0.00 0.00 0.00 2.24
190 191 7.674772 CCTATTTAGACCTAGCCCAATAGTAGT 59.325 40.741 0.00 0.00 0.00 2.73
191 192 7.894364 TCCTATTTAGACCTAGCCCAATAGTAG 59.106 40.741 0.00 0.00 0.00 2.57
192 193 7.772686 TCCTATTTAGACCTAGCCCAATAGTA 58.227 38.462 0.00 0.00 0.00 1.82
193 194 6.631107 TCCTATTTAGACCTAGCCCAATAGT 58.369 40.000 0.00 0.00 0.00 2.12
194 195 7.554959 TTCCTATTTAGACCTAGCCCAATAG 57.445 40.000 0.00 0.00 0.00 1.73
195 196 7.941053 TTTCCTATTTAGACCTAGCCCAATA 57.059 36.000 0.00 0.00 0.00 1.90
196 197 6.841781 TTTCCTATTTAGACCTAGCCCAAT 57.158 37.500 0.00 0.00 0.00 3.16
197 198 6.645884 TTTTCCTATTTAGACCTAGCCCAA 57.354 37.500 0.00 0.00 0.00 4.12
198 199 6.645884 TTTTTCCTATTTAGACCTAGCCCA 57.354 37.500 0.00 0.00 0.00 5.36
230 231 6.218368 AGCATCAAAGCCCTAAGAGCATCT 62.218 45.833 0.00 0.00 41.58 2.90
231 232 2.292845 GCATCAAAGCCCTAAGAGCATC 59.707 50.000 0.00 0.00 0.00 3.91
232 233 2.091994 AGCATCAAAGCCCTAAGAGCAT 60.092 45.455 0.00 0.00 34.23 3.79
233 234 1.283029 AGCATCAAAGCCCTAAGAGCA 59.717 47.619 0.00 0.00 34.23 4.26
234 235 1.946081 GAGCATCAAAGCCCTAAGAGC 59.054 52.381 0.00 0.00 34.23 4.09
235 236 3.204526 CAGAGCATCAAAGCCCTAAGAG 58.795 50.000 0.00 0.00 37.82 2.85
236 237 2.573462 ACAGAGCATCAAAGCCCTAAGA 59.427 45.455 0.00 0.00 37.82 2.10
237 238 2.941720 GACAGAGCATCAAAGCCCTAAG 59.058 50.000 0.00 0.00 37.82 2.18
238 239 2.573462 AGACAGAGCATCAAAGCCCTAA 59.427 45.455 0.00 0.00 37.82 2.69
239 240 2.093288 CAGACAGAGCATCAAAGCCCTA 60.093 50.000 0.00 0.00 37.82 3.53
240 241 0.990374 AGACAGAGCATCAAAGCCCT 59.010 50.000 0.00 0.00 37.82 5.19
241 242 1.093159 CAGACAGAGCATCAAAGCCC 58.907 55.000 0.00 0.00 37.82 5.19
242 243 1.093159 CCAGACAGAGCATCAAAGCC 58.907 55.000 0.00 0.00 37.82 4.35
243 244 1.736681 GACCAGACAGAGCATCAAAGC 59.263 52.381 0.00 0.00 37.82 3.51
244 245 3.260740 GAGACCAGACAGAGCATCAAAG 58.739 50.000 0.00 0.00 37.82 2.77
245 246 2.353109 CGAGACCAGACAGAGCATCAAA 60.353 50.000 0.00 0.00 37.82 2.69
246 247 1.203287 CGAGACCAGACAGAGCATCAA 59.797 52.381 0.00 0.00 37.82 2.57
247 248 0.813821 CGAGACCAGACAGAGCATCA 59.186 55.000 0.00 0.00 37.82 3.07
248 249 0.814457 ACGAGACCAGACAGAGCATC 59.186 55.000 0.00 0.00 0.00 3.91
249 250 1.261480 AACGAGACCAGACAGAGCAT 58.739 50.000 0.00 0.00 0.00 3.79
250 251 1.040646 AAACGAGACCAGACAGAGCA 58.959 50.000 0.00 0.00 0.00 4.26
251 252 2.062519 GAAAACGAGACCAGACAGAGC 58.937 52.381 0.00 0.00 0.00 4.09
252 253 2.297597 AGGAAAACGAGACCAGACAGAG 59.702 50.000 0.00 0.00 0.00 3.35
253 254 2.317040 AGGAAAACGAGACCAGACAGA 58.683 47.619 0.00 0.00 0.00 3.41
254 255 2.821991 AGGAAAACGAGACCAGACAG 57.178 50.000 0.00 0.00 0.00 3.51
255 256 4.087182 AGATAGGAAAACGAGACCAGACA 58.913 43.478 0.00 0.00 0.00 3.41
256 257 4.722361 AGATAGGAAAACGAGACCAGAC 57.278 45.455 0.00 0.00 0.00 3.51
257 258 4.159879 GGAAGATAGGAAAACGAGACCAGA 59.840 45.833 0.00 0.00 0.00 3.86
258 259 4.160626 AGGAAGATAGGAAAACGAGACCAG 59.839 45.833 0.00 0.00 0.00 4.00
259 260 4.094476 AGGAAGATAGGAAAACGAGACCA 58.906 43.478 0.00 0.00 0.00 4.02
260 261 4.441773 GGAGGAAGATAGGAAAACGAGACC 60.442 50.000 0.00 0.00 0.00 3.85
261 262 4.441773 GGGAGGAAGATAGGAAAACGAGAC 60.442 50.000 0.00 0.00 0.00 3.36
262 263 3.705072 GGGAGGAAGATAGGAAAACGAGA 59.295 47.826 0.00 0.00 0.00 4.04
263 264 3.491104 CGGGAGGAAGATAGGAAAACGAG 60.491 52.174 0.00 0.00 0.00 4.18
264 265 2.429610 CGGGAGGAAGATAGGAAAACGA 59.570 50.000 0.00 0.00 0.00 3.85
265 266 2.429610 TCGGGAGGAAGATAGGAAAACG 59.570 50.000 0.00 0.00 0.00 3.60
266 267 4.482952 TTCGGGAGGAAGATAGGAAAAC 57.517 45.455 0.00 0.00 0.00 2.43
281 282 0.320421 CGCTTTTCCTGTCTTCGGGA 60.320 55.000 0.00 0.00 46.32 5.14
282 283 0.320421 TCGCTTTTCCTGTCTTCGGG 60.320 55.000 0.00 0.00 41.27 5.14
283 284 1.726853 ATCGCTTTTCCTGTCTTCGG 58.273 50.000 0.00 0.00 0.00 4.30
284 285 3.813529 AAATCGCTTTTCCTGTCTTCG 57.186 42.857 0.00 0.00 0.00 3.79
285 286 4.393371 AGCTAAATCGCTTTTCCTGTCTTC 59.607 41.667 0.00 0.00 36.74 2.87
286 287 4.327680 AGCTAAATCGCTTTTCCTGTCTT 58.672 39.130 0.00 0.00 36.74 3.01
287 288 3.944087 AGCTAAATCGCTTTTCCTGTCT 58.056 40.909 0.00 0.00 36.74 3.41
307 308 3.431725 GTTCCTGGCGGCGGAAAG 61.432 66.667 27.41 11.17 41.85 2.62
308 309 3.894547 GAGTTCCTGGCGGCGGAAA 62.895 63.158 27.41 11.02 41.85 3.13
309 310 4.388499 GAGTTCCTGGCGGCGGAA 62.388 66.667 23.95 23.95 38.18 4.30
311 312 4.473520 ATGAGTTCCTGGCGGCGG 62.474 66.667 11.58 11.58 0.00 6.13
312 313 3.197790 CATGAGTTCCTGGCGGCG 61.198 66.667 0.51 0.51 0.00 6.46
313 314 3.512516 GCATGAGTTCCTGGCGGC 61.513 66.667 0.00 0.00 0.00 6.53
314 315 1.817099 GAGCATGAGTTCCTGGCGG 60.817 63.158 0.00 0.00 0.00 6.13
315 316 2.169789 CGAGCATGAGTTCCTGGCG 61.170 63.158 0.00 0.00 0.00 5.69
316 317 1.817099 CCGAGCATGAGTTCCTGGC 60.817 63.158 0.00 0.00 0.00 4.85
317 318 1.817099 GCCGAGCATGAGTTCCTGG 60.817 63.158 0.00 0.00 0.00 4.45
318 319 1.817099 GGCCGAGCATGAGTTCCTG 60.817 63.158 0.00 0.00 0.00 3.86
319 320 2.586792 GGCCGAGCATGAGTTCCT 59.413 61.111 0.00 0.00 0.00 3.36
320 321 2.892425 CGGCCGAGCATGAGTTCC 60.892 66.667 24.07 0.00 0.00 3.62
321 322 3.567797 GCGGCCGAGCATGAGTTC 61.568 66.667 33.48 2.06 37.05 3.01
324 325 4.923942 ATGGCGGCCGAGCATGAG 62.924 66.667 33.48 0.00 39.27 2.90
325 326 4.488136 AATGGCGGCCGAGCATGA 62.488 61.111 33.48 4.84 39.27 3.07
326 327 3.957535 GAATGGCGGCCGAGCATG 61.958 66.667 33.48 0.00 39.27 4.06
327 328 4.181010 AGAATGGCGGCCGAGCAT 62.181 61.111 33.48 12.06 39.27 3.79
328 329 4.838152 GAGAATGGCGGCCGAGCA 62.838 66.667 33.48 3.13 39.27 4.26
334 335 4.508128 TCGACGGAGAATGGCGGC 62.508 66.667 0.00 0.00 0.00 6.53
335 336 2.582498 GTCGACGGAGAATGGCGG 60.582 66.667 0.00 0.00 0.00 6.13
336 337 2.949678 CGTCGACGGAGAATGGCG 60.950 66.667 29.70 0.00 35.37 5.69
337 338 1.872679 GTCGTCGACGGAGAATGGC 60.873 63.158 35.05 12.95 40.29 4.40
338 339 1.226603 GGTCGTCGACGGAGAATGG 60.227 63.158 35.05 7.30 40.29 3.16
339 340 0.248134 GAGGTCGTCGACGGAGAATG 60.248 60.000 35.05 8.08 40.29 2.67
340 341 2.096596 GAGGTCGTCGACGGAGAAT 58.903 57.895 35.05 18.10 40.29 2.40
341 342 3.571119 GAGGTCGTCGACGGAGAA 58.429 61.111 35.05 15.53 40.29 2.87
353 354 2.266627 ACCACTGACGACCGAGGTC 61.267 63.158 12.07 12.07 41.40 3.85
354 355 2.203451 ACCACTGACGACCGAGGT 60.203 61.111 0.00 0.00 0.00 3.85
355 356 2.201436 CTCACCACTGACGACCGAGG 62.201 65.000 0.00 0.00 0.00 4.63
356 357 1.210413 CTCACCACTGACGACCGAG 59.790 63.158 0.00 0.00 0.00 4.63
357 358 2.265904 CCTCACCACTGACGACCGA 61.266 63.158 0.00 0.00 0.00 4.69
358 359 2.258591 CCTCACCACTGACGACCG 59.741 66.667 0.00 0.00 0.00 4.79
359 360 2.657237 CCCTCACCACTGACGACC 59.343 66.667 0.00 0.00 0.00 4.79
360 361 2.657237 CCCCTCACCACTGACGAC 59.343 66.667 0.00 0.00 0.00 4.34
361 362 2.603473 CCCCCTCACCACTGACGA 60.603 66.667 0.00 0.00 0.00 4.20
362 363 2.923035 ACCCCCTCACCACTGACG 60.923 66.667 0.00 0.00 0.00 4.35
363 364 1.201429 ATGACCCCCTCACCACTGAC 61.201 60.000 0.00 0.00 0.00 3.51
364 365 0.909610 GATGACCCCCTCACCACTGA 60.910 60.000 0.00 0.00 0.00 3.41
365 366 1.604378 GATGACCCCCTCACCACTG 59.396 63.158 0.00 0.00 0.00 3.66
366 367 1.990060 CGATGACCCCCTCACCACT 60.990 63.158 0.00 0.00 0.00 4.00
367 368 0.974010 TACGATGACCCCCTCACCAC 60.974 60.000 0.00 0.00 0.00 4.16
368 369 0.031515 ATACGATGACCCCCTCACCA 60.032 55.000 0.00 0.00 0.00 4.17
369 370 0.680061 GATACGATGACCCCCTCACC 59.320 60.000 0.00 0.00 0.00 4.02
370 371 0.680061 GGATACGATGACCCCCTCAC 59.320 60.000 0.00 0.00 0.00 3.51
371 372 0.263468 TGGATACGATGACCCCCTCA 59.737 55.000 0.00 0.00 42.51 3.86
372 373 1.276421 CATGGATACGATGACCCCCTC 59.724 57.143 0.00 0.00 42.51 4.30
373 374 1.352083 CATGGATACGATGACCCCCT 58.648 55.000 0.00 0.00 42.51 4.79
374 375 0.321653 GCATGGATACGATGACCCCC 60.322 60.000 0.00 0.00 42.51 5.40
375 376 0.670546 CGCATGGATACGATGACCCC 60.671 60.000 0.00 0.00 42.51 4.95
376 377 0.033504 ACGCATGGATACGATGACCC 59.966 55.000 0.00 0.00 42.51 4.46
377 378 1.139989 CACGCATGGATACGATGACC 58.860 55.000 0.00 0.00 42.51 4.02
378 379 1.522676 CACACGCATGGATACGATGAC 59.477 52.381 0.00 0.00 42.51 3.06
379 380 1.537990 CCACACGCATGGATACGATGA 60.538 52.381 0.00 0.00 43.02 2.92
380 381 0.861185 CCACACGCATGGATACGATG 59.139 55.000 0.00 0.00 43.02 3.84
381 382 0.750249 TCCACACGCATGGATACGAT 59.250 50.000 4.14 0.00 44.14 3.73
382 383 2.194460 TCCACACGCATGGATACGA 58.806 52.632 4.14 0.00 44.14 3.43
383 384 4.825377 TCCACACGCATGGATACG 57.175 55.556 4.14 0.00 44.14 3.06
388 389 3.312421 CCTAAAACTATCCACACGCATGG 59.688 47.826 0.00 0.00 41.57 3.66
389 390 3.242739 GCCTAAAACTATCCACACGCATG 60.243 47.826 0.00 0.00 0.00 4.06
390 391 2.943033 GCCTAAAACTATCCACACGCAT 59.057 45.455 0.00 0.00 0.00 4.73
391 392 2.352388 GCCTAAAACTATCCACACGCA 58.648 47.619 0.00 0.00 0.00 5.24
392 393 1.669265 GGCCTAAAACTATCCACACGC 59.331 52.381 0.00 0.00 0.00 5.34
393 394 2.980568 TGGCCTAAAACTATCCACACG 58.019 47.619 3.32 0.00 0.00 4.49
394 395 4.765339 ACTTTGGCCTAAAACTATCCACAC 59.235 41.667 3.32 0.00 0.00 3.82
395 396 4.993028 ACTTTGGCCTAAAACTATCCACA 58.007 39.130 3.32 0.00 0.00 4.17
396 397 5.066117 GCTACTTTGGCCTAAAACTATCCAC 59.934 44.000 3.32 0.00 0.00 4.02
397 398 5.045140 AGCTACTTTGGCCTAAAACTATCCA 60.045 40.000 3.32 0.00 0.00 3.41
398 399 5.437946 AGCTACTTTGGCCTAAAACTATCC 58.562 41.667 3.32 0.00 0.00 2.59
399 400 7.769507 ACTAAGCTACTTTGGCCTAAAACTATC 59.230 37.037 3.32 0.00 0.00 2.08
400 401 7.631007 ACTAAGCTACTTTGGCCTAAAACTAT 58.369 34.615 3.32 0.00 0.00 2.12
401 402 7.012661 ACTAAGCTACTTTGGCCTAAAACTA 57.987 36.000 3.32 0.00 0.00 2.24
402 403 5.877491 ACTAAGCTACTTTGGCCTAAAACT 58.123 37.500 3.32 0.00 0.00 2.66
403 404 6.430308 AGAACTAAGCTACTTTGGCCTAAAAC 59.570 38.462 3.32 0.00 0.00 2.43
404 405 6.540083 AGAACTAAGCTACTTTGGCCTAAAA 58.460 36.000 3.32 0.00 0.00 1.52
405 406 6.123045 AGAACTAAGCTACTTTGGCCTAAA 57.877 37.500 3.32 2.03 0.00 1.85
406 407 5.757099 AGAACTAAGCTACTTTGGCCTAA 57.243 39.130 3.32 0.53 0.00 2.69
407 408 5.757099 AAGAACTAAGCTACTTTGGCCTA 57.243 39.130 3.32 0.00 0.00 3.93
408 409 4.642466 AAGAACTAAGCTACTTTGGCCT 57.358 40.909 3.32 0.00 0.00 5.19
409 410 5.048153 CAAAGAACTAAGCTACTTTGGCC 57.952 43.478 15.70 0.00 42.73 5.36
412 413 6.039382 ACAACCCAAAGAACTAAGCTACTTTG 59.961 38.462 16.16 16.16 44.65 2.77
413 414 6.127101 ACAACCCAAAGAACTAAGCTACTTT 58.873 36.000 0.00 0.00 33.69 2.66
414 415 5.691896 ACAACCCAAAGAACTAAGCTACTT 58.308 37.500 0.00 0.00 0.00 2.24
415 416 5.306114 ACAACCCAAAGAACTAAGCTACT 57.694 39.130 0.00 0.00 0.00 2.57
416 417 5.529800 TGAACAACCCAAAGAACTAAGCTAC 59.470 40.000 0.00 0.00 0.00 3.58
417 418 5.686753 TGAACAACCCAAAGAACTAAGCTA 58.313 37.500 0.00 0.00 0.00 3.32
418 419 4.532834 TGAACAACCCAAAGAACTAAGCT 58.467 39.130 0.00 0.00 0.00 3.74
419 420 4.911514 TGAACAACCCAAAGAACTAAGC 57.088 40.909 0.00 0.00 0.00 3.09
420 421 5.238650 ACGATGAACAACCCAAAGAACTAAG 59.761 40.000 0.00 0.00 0.00 2.18
421 422 5.127491 ACGATGAACAACCCAAAGAACTAA 58.873 37.500 0.00 0.00 0.00 2.24
422 423 4.710324 ACGATGAACAACCCAAAGAACTA 58.290 39.130 0.00 0.00 0.00 2.24
423 424 3.551846 ACGATGAACAACCCAAAGAACT 58.448 40.909 0.00 0.00 0.00 3.01
424 425 3.564225 AGACGATGAACAACCCAAAGAAC 59.436 43.478 0.00 0.00 0.00 3.01
425 426 3.815809 AGACGATGAACAACCCAAAGAA 58.184 40.909 0.00 0.00 0.00 2.52
426 427 3.485463 AGACGATGAACAACCCAAAGA 57.515 42.857 0.00 0.00 0.00 2.52
427 428 4.568152 AAAGACGATGAACAACCCAAAG 57.432 40.909 0.00 0.00 0.00 2.77
428 429 4.993029 AAAAGACGATGAACAACCCAAA 57.007 36.364 0.00 0.00 0.00 3.28
429 430 4.993029 AAAAAGACGATGAACAACCCAA 57.007 36.364 0.00 0.00 0.00 4.12
460 461 5.049405 CAGCCTCGTATGTTGTCTTCTTTTT 60.049 40.000 0.00 0.00 0.00 1.94
468 469 0.391130 TGGCAGCCTCGTATGTTGTC 60.391 55.000 14.15 0.00 0.00 3.18
476 477 3.482232 AAACAGCTGGCAGCCTCGT 62.482 57.895 34.33 25.40 43.77 4.18
586 598 1.562008 GAAGAGGAGGGGAAGGAAAGG 59.438 57.143 0.00 0.00 0.00 3.11
624 636 0.109226 CTCGGGGTTGAGTTCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
627 639 0.390472 CTGCTCGGGGTTGAGTTCTC 60.390 60.000 0.00 0.00 38.28 2.87
717 733 1.757699 GGACGCTCCTGGTTCTTATCT 59.242 52.381 0.00 0.00 32.53 1.98
726 742 3.358076 GAAGGACGGACGCTCCTGG 62.358 68.421 13.71 0.00 38.24 4.45
755 771 3.138930 TAGTGGAGAGATGCCGCGC 62.139 63.158 0.00 0.00 40.77 6.86
762 778 3.645687 GGAAATCAGCCTAGTGGAGAGAT 59.354 47.826 0.00 0.00 34.57 2.75
773 789 2.273619 ACCAAGAGAGGAAATCAGCCT 58.726 47.619 0.00 0.00 38.81 4.58
1090 1107 2.095853 CGGCGTATTGAAGACTGCAATT 59.904 45.455 14.05 0.00 37.22 2.32
1092 1109 1.075542 CGGCGTATTGAAGACTGCAA 58.924 50.000 0.00 0.00 0.00 4.08
1098 1115 0.531974 GGATGCCGGCGTATTGAAGA 60.532 55.000 23.94 0.00 0.00 2.87
1100 1117 1.092921 GTGGATGCCGGCGTATTGAA 61.093 55.000 23.94 0.74 0.00 2.69
1102 1119 1.817520 TGTGGATGCCGGCGTATTG 60.818 57.895 23.94 0.00 0.00 1.90
1168 1185 2.364324 CAGAGCAGCGGTTACCCTTATA 59.636 50.000 0.00 0.00 0.00 0.98
1254 1272 0.322816 TGCCCTCAGAGAAATGGTGC 60.323 55.000 0.00 0.00 0.00 5.01
1269 1287 3.704061 TGGCTAGGATTAAAATGTTGCCC 59.296 43.478 0.00 0.00 37.27 5.36
1307 1325 3.559238 AAACATCATTGGAGCAACGTC 57.441 42.857 0.00 0.00 0.00 4.34
1343 1361 3.534357 TTTGGGGGCTTCAGATAACAA 57.466 42.857 0.00 0.00 0.00 2.83
1374 1392 6.994221 AGTAATTACAGATCGGTAGGATTGG 58.006 40.000 17.65 0.00 34.82 3.16
1385 1403 9.031360 TCTAAACAATGCGAGTAATTACAGATC 57.969 33.333 17.65 5.91 0.00 2.75
1488 1506 0.663153 GGTAAGAATGATGCCACGGC 59.337 55.000 0.00 0.00 42.35 5.68
1509 1527 7.446319 CCTTGCTGTCCATGATATTATCAAAGA 59.554 37.037 10.30 7.49 43.50 2.52
1510 1528 7.591165 CCTTGCTGTCCATGATATTATCAAAG 58.409 38.462 10.30 6.90 43.50 2.77
1541 1559 0.598680 CCTCCTTCGCAGCGATAAGG 60.599 60.000 24.31 24.31 35.81 2.69
1570 1588 2.682352 GCTTCCAGCTCTTCATTCCTTC 59.318 50.000 0.00 0.00 38.45 3.46
1605 1623 5.009010 CACTTGCTTGGAGCTTTCTCTTTAA 59.991 40.000 1.29 0.00 42.97 1.52
1637 1655 4.155733 CCCTGTGCCGGCGTATCA 62.156 66.667 23.90 16.54 0.00 2.15
1766 1784 6.619801 AAGCAGTAAAGACCAGTAAAACAG 57.380 37.500 0.00 0.00 0.00 3.16
1770 1788 5.686753 TCCAAAGCAGTAAAGACCAGTAAA 58.313 37.500 0.00 0.00 0.00 2.01
1872 1952 7.095523 GCAACTCAAAATGTGCAGAATAATTGT 60.096 33.333 0.00 0.00 0.00 2.71
1926 2006 6.266323 TCTAAAAGAGCATAGACACGATCAC 58.734 40.000 0.00 0.00 0.00 3.06
2019 2099 2.665165 AGTGACCCAAAATGCACTCAA 58.335 42.857 0.00 0.00 36.98 3.02
2160 2240 7.340232 CAGGTTTGATATCCCAAAATCTCAGAA 59.660 37.037 0.00 0.00 37.72 3.02
2161 2241 6.830324 CAGGTTTGATATCCCAAAATCTCAGA 59.170 38.462 0.00 0.00 37.72 3.27
2204 2284 7.258441 TGGTATTTTTCACGAAATTTCACACA 58.742 30.769 17.99 3.69 31.96 3.72
2282 2363 5.414454 TCCGAACAAAAATCTATCCAACCAG 59.586 40.000 0.00 0.00 0.00 4.00
2283 2364 5.182380 GTCCGAACAAAAATCTATCCAACCA 59.818 40.000 0.00 0.00 0.00 3.67
2284 2365 5.182380 TGTCCGAACAAAAATCTATCCAACC 59.818 40.000 0.00 0.00 30.70 3.77
2285 2366 6.072673 ACTGTCCGAACAAAAATCTATCCAAC 60.073 38.462 0.00 0.00 34.24 3.77
2378 2461 5.742562 ATTTGGGGATATCAAACCTGGTA 57.257 39.130 0.00 0.00 37.00 3.25
2453 2536 2.976490 GCTCCTGGGTGCTCCACAT 61.976 63.158 7.20 0.00 41.46 3.21
2505 2601 3.576982 CGGGGTAAGTATGGCAGAATAGA 59.423 47.826 0.00 0.00 0.00 1.98
2537 2633 7.385267 TGATGTTATTTGCACCTGCTTTTATT 58.615 30.769 0.00 0.00 42.66 1.40
2794 2890 2.684001 TCGTAATCTTCCGCATGGTT 57.316 45.000 0.00 0.00 36.30 3.67
2951 3047 3.049674 CGCCTCGGCTTCTTTGCA 61.050 61.111 6.35 0.00 39.32 4.08
3065 3161 1.139654 AGTCTGCACAAGAACTCAGCA 59.860 47.619 0.00 0.00 36.40 4.41
3079 3175 4.561105 GTGGACCATAAGCTATAGTCTGC 58.439 47.826 0.00 0.00 29.35 4.26
3179 3275 2.266055 GCCCGCAGCTCTTGTAGT 59.734 61.111 0.00 0.00 38.99 2.73
3224 3320 2.380064 TCACCAAAGCCTTCACCAAT 57.620 45.000 0.00 0.00 0.00 3.16
3449 3545 5.130311 TGCCTGTATGATTCTAGCAAAGGTA 59.870 40.000 0.00 0.00 0.00 3.08
3547 3646 7.726291 TGGACCAGTAGGATTTTTGTTTCATTA 59.274 33.333 0.00 0.00 38.69 1.90
3661 4736 5.361571 TGCATGCATCATAAAGTCCATTTCT 59.638 36.000 18.46 0.00 32.01 2.52
3673 4749 9.299963 GTTATAACAAAGTTTGCATGCATCATA 57.700 29.630 23.37 2.82 0.00 2.15
3802 4878 7.582667 ACAAAGTACAGCACCTATTCTTTTT 57.417 32.000 0.00 0.00 0.00 1.94
3942 5018 2.766263 TGCTACTGAGGTTACCATGAGG 59.234 50.000 3.51 0.00 42.21 3.86
3995 5071 5.130975 AGGGACAATCTATCTGCAACATACA 59.869 40.000 0.00 0.00 0.00 2.29
4000 5076 3.873952 GACAGGGACAATCTATCTGCAAC 59.126 47.826 0.00 0.00 0.00 4.17
4060 5136 0.741221 GCCTGAGTAAGTTCCCTGCG 60.741 60.000 0.00 0.00 0.00 5.18
4144 5220 8.672815 TCTTTGTTTGCCAAAATAAGAAAAAGG 58.327 29.630 10.91 0.00 42.31 3.11
4146 5222 9.225436 AGTCTTTGTTTGCCAAAATAAGAAAAA 57.775 25.926 13.61 0.00 42.31 1.94
4300 5386 2.932614 ACCGAAGCTGAGATGAAATTCG 59.067 45.455 0.00 0.00 39.26 3.34
4403 5512 4.830600 TCCAATGATACGCACATCCTAGTA 59.169 41.667 0.00 0.00 0.00 1.82
4404 5513 3.641436 TCCAATGATACGCACATCCTAGT 59.359 43.478 0.00 0.00 0.00 2.57
4405 5514 3.990469 GTCCAATGATACGCACATCCTAG 59.010 47.826 0.00 0.00 0.00 3.02
4406 5515 3.552068 CGTCCAATGATACGCACATCCTA 60.552 47.826 0.00 0.00 31.66 2.94
4407 5516 2.803133 CGTCCAATGATACGCACATCCT 60.803 50.000 0.00 0.00 31.66 3.24
4408 5517 1.526887 CGTCCAATGATACGCACATCC 59.473 52.381 0.00 0.00 31.66 3.51
4409 5518 2.218759 GTCGTCCAATGATACGCACATC 59.781 50.000 3.74 0.00 38.94 3.06
4410 5519 2.159099 AGTCGTCCAATGATACGCACAT 60.159 45.455 3.74 0.00 38.94 3.21
4411 5520 1.203758 AGTCGTCCAATGATACGCACA 59.796 47.619 3.74 0.00 38.94 4.57
4412 5521 1.922570 AGTCGTCCAATGATACGCAC 58.077 50.000 3.74 3.99 38.94 5.34
4413 5522 4.316205 AATAGTCGTCCAATGATACGCA 57.684 40.909 3.74 0.00 38.94 5.24
4414 5523 4.506654 ACAAATAGTCGTCCAATGATACGC 59.493 41.667 3.74 0.74 38.94 4.42
4416 5525 6.183360 TGCAACAAATAGTCGTCCAATGATAC 60.183 38.462 0.00 0.00 0.00 2.24
4516 5717 1.493022 ACAGGGACAGGCAAAACTACA 59.507 47.619 0.00 0.00 0.00 2.74
4590 5791 3.056952 CATCTGTGCAATAAACTCCGC 57.943 47.619 0.00 0.00 0.00 5.54
4701 5902 1.464997 GGCCACTGCTTAGTTTTCTCG 59.535 52.381 0.00 0.00 37.74 4.04
4702 5903 1.464997 CGGCCACTGCTTAGTTTTCTC 59.535 52.381 2.24 0.00 37.74 2.87
4703 5904 1.523758 CGGCCACTGCTTAGTTTTCT 58.476 50.000 2.24 0.00 37.74 2.52
4704 5905 0.109735 GCGGCCACTGCTTAGTTTTC 60.110 55.000 2.24 0.00 37.74 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.