Multiple sequence alignment - TraesCS3B01G337700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G337700 chr3B 100.000 4822 0 0 1 4822 544108302 544113123 0.000000e+00 8905.0
1 TraesCS3B01G337700 chr3B 97.297 37 1 0 1265 1301 777578791 777578827 4.030000e-06 63.9
2 TraesCS3B01G337700 chr3B 82.812 64 11 0 4444 4507 628473007 628472944 1.870000e-04 58.4
3 TraesCS3B01G337700 chr3D 95.044 4863 172 29 4 4822 417737453 417742290 0.000000e+00 7581.0
4 TraesCS3B01G337700 chr3D 86.441 59 6 2 1265 1321 581116035 581115977 4.030000e-06 63.9
5 TraesCS3B01G337700 chr3A 91.612 4590 258 61 4 4559 532938555 532934059 0.000000e+00 6226.0
6 TraesCS3B01G337700 chr3A 97.297 37 1 0 1265 1301 716756784 716756820 4.030000e-06 63.9
7 TraesCS3B01G337700 chr7A 89.377 273 24 2 4555 4822 11265223 11264951 5.980000e-89 339.0
8 TraesCS3B01G337700 chr6B 89.259 270 23 6 4558 4822 189138358 189138090 2.780000e-87 333.0
9 TraesCS3B01G337700 chr1D 89.011 273 24 6 4555 4822 79104493 79104764 2.780000e-87 333.0
10 TraesCS3B01G337700 chr6A 88.971 272 25 1 4556 4822 32503399 32503670 1.000000e-86 331.0
11 TraesCS3B01G337700 chr7B 88.848 269 24 6 4558 4821 328517027 328516760 4.650000e-85 326.0
12 TraesCS3B01G337700 chr1A 88.321 274 26 6 4555 4822 517900215 517899942 1.670000e-84 324.0
13 TraesCS3B01G337700 chr5B 88.278 273 26 3 4555 4822 589233559 589233288 6.020000e-84 322.0
14 TraesCS3B01G337700 chr5B 100.000 28 0 0 1345 1372 38355032 38355059 9.000000e-03 52.8
15 TraesCS3B01G337700 chr5A 88.278 273 27 2 4555 4822 98446247 98446519 6.020000e-84 322.0
16 TraesCS3B01G337700 chr6D 100.000 28 0 0 1342 1369 346250640 346250667 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G337700 chr3B 544108302 544113123 4821 False 8905 8905 100.000 1 4822 1 chr3B.!!$F1 4821
1 TraesCS3B01G337700 chr3D 417737453 417742290 4837 False 7581 7581 95.044 4 4822 1 chr3D.!!$F1 4818
2 TraesCS3B01G337700 chr3A 532934059 532938555 4496 True 6226 6226 91.612 4 4559 1 chr3A.!!$R1 4555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 422 0.038983 GTGCAATTTTACCCGCGGTT 60.039 50.000 26.12 13.84 37.09 4.44 F
422 429 0.953003 TTTACCCGCGGTTTTCCTTG 59.047 50.000 26.12 8.44 37.09 3.61 F
850 867 1.149854 GGTGACGTGGGGGAGTTTT 59.850 57.895 0.00 0.00 0.00 2.43 F
2019 2067 0.106769 TGCAAGTTGCCTTCCACTCA 60.107 50.000 24.59 0.00 44.23 3.41 F
3403 3462 0.390124 CTGGCATGTGGCACAAGTTT 59.610 50.000 25.95 4.79 46.12 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1534 0.249868 CACATGACACCACGTCCAGT 60.250 55.000 0.00 0.0 44.71 4.00 R
1977 2025 0.612174 TAGGCAGGACGTCTTCAGCT 60.612 55.000 16.46 0.0 0.00 4.24 R
2334 2382 1.002087 AGTTCCAGGCCTAACAACTCG 59.998 52.381 18.52 0.0 0.00 4.18 R
3806 3865 0.320374 ACCTTCACTTCATCGCCGAA 59.680 50.000 0.00 0.0 0.00 4.30 R
4488 4551 0.313672 TTGTGGGCAACGAGAAATGC 59.686 50.000 0.00 0.0 41.82 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.861113 CGCTCCGCTAATACAACTTACAA 59.139 43.478 0.00 0.00 0.00 2.41
117 119 5.437060 GCCCCAAATAGAGTATGAAGAACA 58.563 41.667 0.00 0.00 0.00 3.18
124 126 1.918609 GAGTATGAAGAACACGGTCGC 59.081 52.381 0.00 0.00 0.00 5.19
152 154 0.241481 GTGCGCGGTAATGGGAAAAA 59.759 50.000 8.83 0.00 0.00 1.94
215 218 1.727062 ATCCTCCCAGCATAGACAGG 58.273 55.000 0.00 0.00 0.00 4.00
216 219 0.636647 TCCTCCCAGCATAGACAGGA 59.363 55.000 0.00 0.00 0.00 3.86
287 290 1.132199 CGTGTGGAGCTTACGCGTAG 61.132 60.000 19.61 14.19 44.40 3.51
307 310 3.128349 AGTACGTTTTGTCATCGCAAGT 58.872 40.909 0.00 0.00 39.48 3.16
365 369 1.044725 CGCGCTTTTGTACTTTGCAG 58.955 50.000 5.56 0.00 0.00 4.41
367 371 2.044135 GCGCTTTTGTACTTTGCAGAC 58.956 47.619 0.00 0.00 0.00 3.51
368 372 2.298300 CGCTTTTGTACTTTGCAGACG 58.702 47.619 0.00 0.00 0.00 4.18
369 373 2.286184 CGCTTTTGTACTTTGCAGACGT 60.286 45.455 0.00 0.00 0.00 4.34
415 422 0.038983 GTGCAATTTTACCCGCGGTT 60.039 50.000 26.12 13.84 37.09 4.44
422 429 0.953003 TTTACCCGCGGTTTTCCTTG 59.047 50.000 26.12 8.44 37.09 3.61
444 451 1.205893 CTTCTTCTTCTCCGACCCCAG 59.794 57.143 0.00 0.00 0.00 4.45
477 486 3.259374 AGAGAACCTGATCGAAGAAAGCA 59.741 43.478 0.00 0.00 43.58 3.91
480 489 4.453819 AGAACCTGATCGAAGAAAGCAAAG 59.546 41.667 0.00 0.00 43.58 2.77
481 490 2.485814 ACCTGATCGAAGAAAGCAAAGC 59.514 45.455 0.00 0.00 43.58 3.51
485 494 2.949714 TCGAAGAAAGCAAAGCGAAG 57.050 45.000 0.00 0.00 0.00 3.79
719 733 1.599047 CACTTGGATCAGCCGGTCT 59.401 57.895 1.90 0.00 40.66 3.85
751 765 4.394797 AAAAGAATCCAGAAAGCTCCCT 57.605 40.909 0.00 0.00 0.00 4.20
802 817 2.103941 GAGATCTGGGCTCGAGGAATTT 59.896 50.000 15.58 0.00 0.00 1.82
850 867 1.149854 GGTGACGTGGGGGAGTTTT 59.850 57.895 0.00 0.00 0.00 2.43
1059 1078 1.218316 CTACCTGTCCAACGGCTCC 59.782 63.158 0.00 0.00 0.00 4.70
1175 1200 1.746615 GCCTGAATCGCCTCAGCAA 60.747 57.895 7.79 0.00 41.36 3.91
1446 1471 4.265056 GTCCCAGGTGGCCGTGTT 62.265 66.667 0.00 0.00 0.00 3.32
1676 1701 5.649831 AGGCTCTTATTGGCTTGTTTAGAAG 59.350 40.000 0.00 0.00 36.97 2.85
1677 1702 5.163612 GGCTCTTATTGGCTTGTTTAGAAGG 60.164 44.000 0.00 0.00 0.00 3.46
1680 1705 2.675658 TTGGCTTGTTTAGAAGGCCT 57.324 45.000 0.00 0.00 45.62 5.19
1757 1802 5.250774 TCAGGCTAGAAATGTTCTACCCTTT 59.749 40.000 8.54 0.00 42.87 3.11
1800 1845 6.710295 ACTGTTCACAGACATTTGCAGTATAA 59.290 34.615 14.00 0.00 46.59 0.98
1825 1870 3.623060 GGCATGCTAATTCGAAACAGAGA 59.377 43.478 18.92 0.00 0.00 3.10
1908 1956 2.106511 TGACCCTTTCTTTCTCTGGTGG 59.893 50.000 0.00 0.00 0.00 4.61
1965 2013 2.474032 GCGACGGCTTATGAACTTTGTC 60.474 50.000 0.00 0.00 35.83 3.18
1992 2040 2.088423 ACTCTAGCTGAAGACGTCCTG 58.912 52.381 13.01 3.13 0.00 3.86
1998 2046 1.537135 GCTGAAGACGTCCTGCCTATC 60.537 57.143 13.01 0.52 0.00 2.08
2010 2058 1.133790 CTGCCTATCTTGCAAGTTGCC 59.866 52.381 25.19 11.93 44.23 4.52
2019 2067 0.106769 TGCAAGTTGCCTTCCACTCA 60.107 50.000 24.59 0.00 44.23 3.41
2039 2087 1.071605 GAGCTTACTCAAGTGCGTGG 58.928 55.000 0.00 0.00 42.93 4.94
2067 2115 4.583907 TGTGTTCAAAGGATTGCAAGATCA 59.416 37.500 4.94 0.00 36.45 2.92
2184 2232 1.354368 ACCATCATTTCGGACCCTGTT 59.646 47.619 0.00 0.00 0.00 3.16
2190 2238 0.682852 TTTCGGACCCTGTTCACGAT 59.317 50.000 0.00 0.00 33.26 3.73
2334 2382 3.751698 ACTGCGATTCCAAAGTTCTTACC 59.248 43.478 0.00 0.00 0.00 2.85
2705 2753 6.023603 ACCTGGAAAATAGAGGTGAAGTCTA 58.976 40.000 0.00 0.00 38.73 2.59
2770 2818 6.100569 TCTCAATATTAAAATGACCGGGGAGA 59.899 38.462 6.32 0.00 0.00 3.71
2784 2832 3.445857 CGGGGAGATCGAGAAAAAGTAC 58.554 50.000 0.00 0.00 0.00 2.73
3114 3165 0.741221 GTTCGAGGGTGGATGCACTC 60.741 60.000 17.44 13.84 35.65 3.51
3317 3370 7.537596 TTGTTGGGTTCATTGATATTCTGTT 57.462 32.000 0.00 0.00 0.00 3.16
3403 3462 0.390124 CTGGCATGTGGCACAAGTTT 59.610 50.000 25.95 4.79 46.12 2.66
3406 3465 2.230992 TGGCATGTGGCACAAGTTTATC 59.769 45.455 25.95 6.64 46.12 1.75
3419 3478 7.201565 GGCACAAGTTTATCTCTACAGATGTTC 60.202 40.741 0.00 0.00 39.90 3.18
3445 3504 2.823196 TGTGTCTTTGCAACTTGTCG 57.177 45.000 0.00 0.00 0.00 4.35
3462 3521 4.970662 TGTCGTTGTAGGTACTATGGTC 57.029 45.455 0.00 0.00 45.60 4.02
3570 3629 7.252708 TCATGAATTAAACATGTCTGTGATGC 58.747 34.615 18.66 0.00 43.56 3.91
3770 3829 1.022451 GCAAGGACACGGCCGATAAA 61.022 55.000 35.90 0.00 0.00 1.40
3806 3865 2.232452 CCTGTCGTCAAACTCCTCATCT 59.768 50.000 0.00 0.00 0.00 2.90
4055 4115 1.811558 GCTGGTTGTGAAGACAGAGCA 60.812 52.381 0.00 0.00 33.73 4.26
4116 4176 4.094887 CCTGCTGTATTTGTTTCGCATAGT 59.905 41.667 0.00 0.00 0.00 2.12
4187 4250 1.270625 TGTAGCGGAAGTTGGAACCTG 60.271 52.381 0.00 0.00 0.00 4.00
4191 4254 1.237285 CGGAAGTTGGAACCTGCCTG 61.237 60.000 0.00 0.00 0.00 4.85
4232 4295 2.627699 AGTTGCCCATTGTCGAATTGTT 59.372 40.909 0.00 0.00 0.00 2.83
4233 4296 3.069443 AGTTGCCCATTGTCGAATTGTTT 59.931 39.130 0.00 0.00 0.00 2.83
4284 4347 9.953697 CGTAGCTCAAACTTTATAGAAGACTAT 57.046 33.333 0.00 0.00 41.52 2.12
4401 4464 6.708285 ACAAAATAACGACATACTCCCTTCT 58.292 36.000 0.00 0.00 0.00 2.85
4432 4495 4.985044 AATTGTCGCACACTTAGTACAC 57.015 40.909 0.00 0.00 0.00 2.90
4442 4505 6.252869 CGCACACTTAGTACACCTTTAGTATG 59.747 42.308 0.00 0.00 0.00 2.39
4445 4508 9.355215 CACACTTAGTACACCTTTAGTATGAAG 57.645 37.037 0.00 0.00 0.00 3.02
4498 4561 1.757699 GGAGGGAGTAGCATTTCTCGT 59.242 52.381 0.00 0.00 0.00 4.18
4643 4729 2.332063 TCCTCGAATCAATCCCTTGC 57.668 50.000 0.00 0.00 32.11 4.01
4698 4784 5.734720 TGAGCTACTTTATTTGTCTCCCTG 58.265 41.667 0.00 0.00 0.00 4.45
4711 4797 5.042463 TGTCTCCCTGTTACAATGTTCAA 57.958 39.130 0.00 0.00 0.00 2.69
4744 4830 4.165779 CGGAACATCACAAGCCATAAAAC 58.834 43.478 0.00 0.00 0.00 2.43
4771 4857 1.454572 ATCAAACACAGCAGCCGCAA 61.455 50.000 0.00 0.00 42.27 4.85
4775 4861 2.667536 CACAGCAGCCGCAACTCT 60.668 61.111 0.00 0.00 42.27 3.24
4777 4863 3.485431 CAGCAGCCGCAACTCTCG 61.485 66.667 0.00 0.00 42.27 4.04
4780 4866 2.181777 CAGCCGCAACTCTCGCTA 59.818 61.111 0.00 0.00 0.00 4.26
4790 4876 3.677424 GCAACTCTCGCTAAATGTCCTCT 60.677 47.826 0.00 0.00 0.00 3.69
4796 4882 6.322712 ACTCTCGCTAAATGTCCTCTATTCTT 59.677 38.462 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.885113 GGCTTTGGACCCGATTGC 59.115 61.111 0.00 0.00 0.00 3.56
25 26 9.584008 TTGGGGTTATGTTTGTAAGTTGTATTA 57.416 29.630 0.00 0.00 0.00 0.98
39 40 9.634021 AATTTTATGTTTTGTTGGGGTTATGTT 57.366 25.926 0.00 0.00 0.00 2.71
152 154 3.332187 CTCCTTCCCCTTTCCTTCTCTTT 59.668 47.826 0.00 0.00 0.00 2.52
215 218 0.322975 TTGCCAGCCTCTTGTCTCTC 59.677 55.000 0.00 0.00 0.00 3.20
216 219 0.324285 CTTGCCAGCCTCTTGTCTCT 59.676 55.000 0.00 0.00 0.00 3.10
255 258 1.221466 CCACACGTCACTGCAATCGT 61.221 55.000 0.00 0.00 36.99 3.73
287 290 3.515071 ACTTGCGATGACAAAACGTAC 57.485 42.857 0.00 0.00 0.00 3.67
307 310 7.728847 ATTAATATTGCTCTACATGTCGCAA 57.271 32.000 23.55 23.55 45.16 4.85
365 369 6.106673 CCCCATAGAATACCATATTCACGTC 58.893 44.000 10.40 0.00 0.00 4.34
367 371 5.874810 CACCCCATAGAATACCATATTCACG 59.125 44.000 10.40 0.00 0.00 4.35
368 372 6.180472 CCACCCCATAGAATACCATATTCAC 58.820 44.000 10.40 0.00 0.00 3.18
369 373 5.280985 GCCACCCCATAGAATACCATATTCA 60.281 44.000 10.40 0.00 0.00 2.57
415 422 3.756117 GGAGAAGAAGAAGGCAAGGAAA 58.244 45.455 0.00 0.00 0.00 3.13
422 429 0.108089 GGGTCGGAGAAGAAGAAGGC 60.108 60.000 0.00 0.00 39.69 4.35
444 451 2.564947 TCAGGTTCTCTTCTCTGGCTTC 59.435 50.000 0.00 0.00 0.00 3.86
477 486 2.904434 TCCCTACCTTTCTCTTCGCTTT 59.096 45.455 0.00 0.00 0.00 3.51
480 489 1.469423 CGTCCCTACCTTTCTCTTCGC 60.469 57.143 0.00 0.00 0.00 4.70
481 490 1.134560 CCGTCCCTACCTTTCTCTTCG 59.865 57.143 0.00 0.00 0.00 3.79
485 494 1.112950 CTCCCGTCCCTACCTTTCTC 58.887 60.000 0.00 0.00 0.00 2.87
734 748 2.797177 ACAGGGAGCTTTCTGGATTC 57.203 50.000 17.67 0.00 35.47 2.52
735 749 3.160269 CAAACAGGGAGCTTTCTGGATT 58.840 45.455 17.67 11.21 35.47 3.01
740 754 1.884235 CGTCAAACAGGGAGCTTTCT 58.116 50.000 0.00 0.00 0.00 2.52
916 933 1.075659 GGAGGCTGCCTTTTGGTCT 59.924 57.895 24.26 0.00 42.99 3.85
948 965 3.249189 AGCCGGACCACCATGTGT 61.249 61.111 5.05 0.00 35.59 3.72
1119 1144 4.421554 CTGCTCCCTCCCCCTCCA 62.422 72.222 0.00 0.00 0.00 3.86
1175 1200 4.070552 GGAGGCGCTCGAGGTTGT 62.071 66.667 15.58 0.00 0.00 3.32
1509 1534 0.249868 CACATGACACCACGTCCAGT 60.250 55.000 0.00 0.00 44.71 4.00
1705 1738 4.443457 GCCATGTGTCTAGCCAAGATTAGA 60.443 45.833 0.00 0.00 36.36 2.10
1719 1752 1.930908 GCCTGAAGCTGCCATGTGTC 61.931 60.000 0.00 0.00 38.99 3.67
1721 1754 2.882876 GCCTGAAGCTGCCATGTG 59.117 61.111 0.00 0.00 38.99 3.21
1757 1802 9.092876 GTGAACAGTCAAATAAACAAATTGGAA 57.907 29.630 0.00 0.00 34.87 3.53
1780 1825 6.404623 GCCAATTATACTGCAAATGTCTGTGA 60.405 38.462 0.00 0.00 0.00 3.58
1800 1845 4.398988 TCTGTTTCGAATTAGCATGCCAAT 59.601 37.500 15.66 10.24 0.00 3.16
1871 1918 5.205517 AGGGTCATGTGAAATGGGAAATA 57.794 39.130 0.00 0.00 0.00 1.40
1908 1956 9.006839 TGATCATCTTAACCATGATTAGCAATC 57.993 33.333 0.00 0.00 40.43 2.67
1965 2013 3.726486 CGTCTTCAGCTAGAGTCTTGTCG 60.726 52.174 0.00 0.00 0.00 4.35
1977 2025 0.612174 TAGGCAGGACGTCTTCAGCT 60.612 55.000 16.46 0.00 0.00 4.24
2010 2058 4.021544 ACTTGAGTAAGCTCTGAGTGGAAG 60.022 45.833 6.53 2.75 42.13 3.46
2019 2067 1.337260 CCACGCACTTGAGTAAGCTCT 60.337 52.381 0.00 0.00 42.13 4.09
2039 2087 6.479660 TCTTGCAATCCTTTGAACACATTTTC 59.520 34.615 0.00 0.00 34.60 2.29
2184 2232 8.528643 TGGATTCTTCTTACTCTTTTATCGTGA 58.471 33.333 0.00 0.00 0.00 4.35
2190 2238 7.394816 CCCTGTGGATTCTTCTTACTCTTTTA 58.605 38.462 0.00 0.00 0.00 1.52
2334 2382 1.002087 AGTTCCAGGCCTAACAACTCG 59.998 52.381 18.52 0.00 0.00 4.18
2532 2580 2.658285 CCCTGCTCCATCTTTGCATTA 58.342 47.619 0.00 0.00 36.07 1.90
2705 2753 7.928307 AGTGTCACTATCATTGCATAAAAGT 57.072 32.000 2.87 0.00 0.00 2.66
2741 2789 8.421002 CCCCGGTCATTTTAATATTGAGAAAAT 58.579 33.333 0.00 0.23 34.00 1.82
2770 2818 3.451540 GAGAGGGGGTACTTTTTCTCGAT 59.548 47.826 0.00 0.00 0.00 3.59
2784 2832 1.004862 GACTTTTTGGGAGAGAGGGGG 59.995 57.143 0.00 0.00 0.00 5.40
3117 3168 2.687935 ACTCATGTTCGCACCTGTTTTT 59.312 40.909 0.00 0.00 0.00 1.94
3159 3211 7.328737 CCAACGATATAGCACCAGATAAAGTAC 59.671 40.741 0.00 0.00 0.00 2.73
3166 3218 6.605471 TTATCCAACGATATAGCACCAGAT 57.395 37.500 0.00 0.00 30.96 2.90
3169 3221 6.995686 ACATTTTATCCAACGATATAGCACCA 59.004 34.615 0.00 0.00 30.96 4.17
3209 3262 7.081349 CAGTTTAGCCAACATTTTATCGAACA 58.919 34.615 0.00 0.00 37.93 3.18
3213 3266 8.234546 AGTAACAGTTTAGCCAACATTTTATCG 58.765 33.333 0.00 0.00 37.93 2.92
3295 3348 7.156876 TGAACAGAATATCAATGAACCCAAC 57.843 36.000 0.00 0.00 0.00 3.77
3317 3370 6.594744 ACACATGCTATCAATAGGTTCATGA 58.405 36.000 16.44 0.00 34.66 3.07
3403 3462 9.508642 CACATACTAGGAACATCTGTAGAGATA 57.491 37.037 1.40 0.00 36.75 1.98
3406 3465 7.500892 AGACACATACTAGGAACATCTGTAGAG 59.499 40.741 0.00 0.00 0.00 2.43
3419 3478 5.470098 ACAAGTTGCAAAGACACATACTAGG 59.530 40.000 0.00 0.00 0.00 3.02
3457 3516 4.291249 ACACCTATGTTTACAAGGGACCAT 59.709 41.667 10.15 0.00 34.46 3.55
3570 3629 2.270986 GGCCCAGTTCCACTGCAAG 61.271 63.158 0.00 0.00 44.63 4.01
3755 3814 1.022451 TGCTTTTATCGGCCGTGTCC 61.022 55.000 27.15 8.82 0.00 4.02
3770 3829 1.615392 GACAGGGCTGAAAACATGCTT 59.385 47.619 0.00 0.00 0.00 3.91
3806 3865 0.320374 ACCTTCACTTCATCGCCGAA 59.680 50.000 0.00 0.00 0.00 4.30
3974 4033 1.202940 GCCTTCTCCAACAAACTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
3975 4034 1.202940 AGCCTTCTCCAACAAACTCCC 60.203 52.381 0.00 0.00 0.00 4.30
4055 4115 3.146182 GGAGCTGGATGATCCGCT 58.854 61.111 23.78 23.78 44.64 5.52
4187 4250 2.755103 CCCCTTTCACTTACATTCAGGC 59.245 50.000 0.00 0.00 0.00 4.85
4191 4254 4.652822 ACTGTCCCCTTTCACTTACATTC 58.347 43.478 0.00 0.00 0.00 2.67
4284 4347 0.662619 GCAATGCACTGGCGCTATAA 59.337 50.000 7.64 0.00 45.35 0.98
4401 4464 5.242434 AGTGTGCGACAATTAGTTTGGATA 58.758 37.500 0.00 0.00 39.80 2.59
4477 4540 2.035632 CGAGAAATGCTACTCCCTCCT 58.964 52.381 0.00 0.00 0.00 3.69
4488 4551 0.313672 TTGTGGGCAACGAGAAATGC 59.686 50.000 0.00 0.00 41.82 3.56
4498 4561 9.688091 TTTGAACTAGTAATATATTGTGGGCAA 57.312 29.630 8.28 4.57 39.16 4.52
4581 4662 9.661563 TTTTCTTACAGACGATGTAACCATTAT 57.338 29.630 11.99 0.00 46.96 1.28
4612 4693 7.824289 GGATTGATTCGAGGAACCATGATATTA 59.176 37.037 0.00 0.00 0.00 0.98
4632 4718 3.524095 TTTTCTGAGGCAAGGGATTGA 57.476 42.857 0.00 0.00 0.00 2.57
4711 4797 7.415206 GGCTTGTGATGTTCCGTTAATTAGATT 60.415 37.037 0.00 0.00 0.00 2.40
4744 4830 3.427528 GCTGCTGTGTTTGATGATTGTTG 59.572 43.478 0.00 0.00 0.00 3.33
4771 4857 5.830991 AGAATAGAGGACATTTAGCGAGAGT 59.169 40.000 0.00 0.00 0.00 3.24
4775 4861 6.465439 TGAAGAATAGAGGACATTTAGCGA 57.535 37.500 0.00 0.00 0.00 4.93
4777 4863 8.341173 CACAATGAAGAATAGAGGACATTTAGC 58.659 37.037 0.00 0.00 0.00 3.09
4780 4866 7.884877 TGACACAATGAAGAATAGAGGACATTT 59.115 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.