Multiple sequence alignment - TraesCS3B01G337400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G337400 chr3B 100.000 3669 0 0 1 3669 543724619 543720951 0.000000e+00 6776
1 TraesCS3B01G337400 chr3B 100.000 2871 0 0 3943 6813 543720677 543717807 0.000000e+00 5302
2 TraesCS3B01G337400 chr3B 98.408 1068 17 0 3943 5010 661541334 661542401 0.000000e+00 1879
3 TraesCS3B01G337400 chr3B 97.290 1070 28 1 3943 5012 513941608 513942676 0.000000e+00 1814
4 TraesCS3B01G337400 chr3B 100.000 79 0 0 6401 6479 543716676 543716754 5.510000e-31 147
5 TraesCS3B01G337400 chrUn 93.686 2439 102 23 701 3125 32915894 32913494 0.000000e+00 3603
6 TraesCS3B01G337400 chrUn 92.073 1148 78 9 5013 6156 32913494 32912356 0.000000e+00 1604
7 TraesCS3B01G337400 chrUn 97.196 535 14 1 3132 3666 423674164 423674697 0.000000e+00 904
8 TraesCS3B01G337400 chrUn 83.503 491 40 24 112 578 32916460 32915987 2.940000e-113 420
9 TraesCS3B01G337400 chrUn 77.215 553 66 39 6253 6770 91653666 91654193 1.130000e-67 268
10 TraesCS3B01G337400 chrUn 77.215 553 66 39 6253 6770 239778040 239777513 1.130000e-67 268
11 TraesCS3B01G337400 chr3D 92.379 1837 89 23 698 2508 417380769 417378958 0.000000e+00 2569
12 TraesCS3B01G337400 chr3D 88.995 945 90 11 5275 6212 417378031 417377094 0.000000e+00 1157
13 TraesCS3B01G337400 chr3D 96.024 654 22 4 2476 3126 417378939 417378287 0.000000e+00 1061
14 TraesCS3B01G337400 chr3D 85.246 488 40 16 112 578 417381337 417380861 2.220000e-129 473
15 TraesCS3B01G337400 chr3D 91.743 218 14 3 5013 5226 417378260 417378043 3.990000e-77 300
16 TraesCS3B01G337400 chr7B 98.598 1070 14 1 3943 5012 650132262 650131194 0.000000e+00 1892
17 TraesCS3B01G337400 chr7B 98.355 547 8 1 3122 3668 650132943 650132398 0.000000e+00 959
18 TraesCS3B01G337400 chr6B 98.318 1070 18 0 3943 5012 184810411 184809342 0.000000e+00 1877
19 TraesCS3B01G337400 chr5B 98.224 1070 19 0 3943 5012 532316329 532315260 0.000000e+00 1871
20 TraesCS3B01G337400 chr5B 96.527 547 17 2 3122 3667 532317187 532316642 0.000000e+00 904
21 TraesCS3B01G337400 chr5B 94.059 101 2 4 292 392 587797593 587797689 4.260000e-32 150
22 TraesCS3B01G337400 chr5B 95.699 93 2 2 300 392 681214323 681214233 1.530000e-31 148
23 TraesCS3B01G337400 chr5B 93.204 103 2 4 292 392 587796670 587796769 5.510000e-31 147
24 TraesCS3B01G337400 chr5B 93.137 102 2 4 294 392 587796056 587796155 1.980000e-30 145
25 TraesCS3B01G337400 chr2B 97.850 1070 23 0 3943 5012 592808186 592807117 0.000000e+00 1849
26 TraesCS3B01G337400 chr2B 96.703 546 17 1 3124 3669 592808823 592808279 0.000000e+00 907
27 TraesCS3B01G337400 chr2B 79.888 179 19 10 6602 6768 667785105 667784932 1.550000e-21 115
28 TraesCS3B01G337400 chr1B 97.290 1070 28 1 3943 5012 468109913 468110981 0.000000e+00 1814
29 TraesCS3B01G337400 chr1B 96.715 548 17 1 3122 3669 100306931 100307477 0.000000e+00 911
30 TraesCS3B01G337400 chr1B 95.948 543 21 1 3125 3667 468109139 468109680 0.000000e+00 880
31 TraesCS3B01G337400 chr2D 95.790 1069 45 0 3944 5012 111160976 111162044 0.000000e+00 1725
32 TraesCS3B01G337400 chr2D 95.971 546 20 2 3124 3669 111160338 111160881 0.000000e+00 885
33 TraesCS3B01G337400 chr2D 98.901 91 0 1 160 250 76863302 76863391 1.970000e-35 161
34 TraesCS3B01G337400 chr1A 94.486 1070 56 3 3943 5012 575088748 575087682 0.000000e+00 1646
35 TraesCS3B01G337400 chr1A 84.462 502 32 9 6246 6707 251558212 251558707 2.900000e-123 453
36 TraesCS3B01G337400 chr1A 93.103 174 9 3 6642 6813 251558711 251558883 1.130000e-62 252
37 TraesCS3B01G337400 chr1A 95.604 91 3 1 159 248 571359384 571359294 1.980000e-30 145
38 TraesCS3B01G337400 chr4B 96.648 537 16 2 3121 3656 10787345 10786810 0.000000e+00 891
39 TraesCS3B01G337400 chr4B 94.845 97 4 1 296 392 13083039 13083134 4.260000e-32 150
40 TraesCS3B01G337400 chr7D 95.396 543 25 0 3124 3666 37923917 37924459 0.000000e+00 865
41 TraesCS3B01G337400 chr6D 89.967 598 21 3 6254 6813 76111641 76112237 0.000000e+00 736
42 TraesCS3B01G337400 chr6D 87.945 365 25 8 6254 6602 1623092 1622731 4.920000e-111 412
43 TraesCS3B01G337400 chr6D 76.978 556 67 40 6251 6770 336215569 336216099 1.880000e-65 261
44 TraesCS3B01G337400 chr6D 81.212 165 14 11 6616 6768 2150861 2151020 4.320000e-22 117
45 TraesCS3B01G337400 chr2A 85.738 603 40 16 6252 6813 31602810 31603407 4.550000e-166 595
46 TraesCS3B01G337400 chr2A 97.727 88 2 0 162 249 77532785 77532872 1.180000e-32 152
47 TraesCS3B01G337400 chr5A 76.344 558 70 35 6254 6770 427084854 427084318 6.830000e-60 243
48 TraesCS3B01G337400 chr5A 95.050 101 1 4 294 392 598531233 598531331 9.150000e-34 156
49 TraesCS3B01G337400 chr5A 98.810 84 1 0 162 245 10503312 10503395 4.260000e-32 150
50 TraesCS3B01G337400 chr5A 95.745 94 0 4 300 392 567921724 567921634 1.530000e-31 148
51 TraesCS3B01G337400 chr5A 93.878 98 3 2 145 242 598005501 598005407 1.980000e-30 145
52 TraesCS3B01G337400 chr5A 79.894 189 18 8 6602 6770 382269748 382269560 3.340000e-23 121
53 TraesCS3B01G337400 chr1D 96.703 91 1 2 159 248 475655575 475655486 4.260000e-32 150
54 TraesCS3B01G337400 chr3A 96.629 89 1 2 158 245 653839680 653839767 5.510000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G337400 chr3B 543717807 543724619 6812 True 6039.000000 6776 100.0000 1 6813 2 chr3B.!!$R1 6812
1 TraesCS3B01G337400 chr3B 661541334 661542401 1067 False 1879.000000 1879 98.4080 3943 5010 1 chr3B.!!$F3 1067
2 TraesCS3B01G337400 chr3B 513941608 513942676 1068 False 1814.000000 1814 97.2900 3943 5012 1 chr3B.!!$F1 1069
3 TraesCS3B01G337400 chrUn 32912356 32916460 4104 True 1875.666667 3603 89.7540 112 6156 3 chrUn.!!$R2 6044
4 TraesCS3B01G337400 chrUn 423674164 423674697 533 False 904.000000 904 97.1960 3132 3666 1 chrUn.!!$F2 534
5 TraesCS3B01G337400 chrUn 91653666 91654193 527 False 268.000000 268 77.2150 6253 6770 1 chrUn.!!$F1 517
6 TraesCS3B01G337400 chrUn 239777513 239778040 527 True 268.000000 268 77.2150 6253 6770 1 chrUn.!!$R1 517
7 TraesCS3B01G337400 chr3D 417377094 417381337 4243 True 1112.000000 2569 90.8774 112 6212 5 chr3D.!!$R1 6100
8 TraesCS3B01G337400 chr7B 650131194 650132943 1749 True 1425.500000 1892 98.4765 3122 5012 2 chr7B.!!$R1 1890
9 TraesCS3B01G337400 chr6B 184809342 184810411 1069 True 1877.000000 1877 98.3180 3943 5012 1 chr6B.!!$R1 1069
10 TraesCS3B01G337400 chr5B 532315260 532317187 1927 True 1387.500000 1871 97.3755 3122 5012 2 chr5B.!!$R2 1890
11 TraesCS3B01G337400 chr2B 592807117 592808823 1706 True 1378.000000 1849 97.2765 3124 5012 2 chr2B.!!$R2 1888
12 TraesCS3B01G337400 chr1B 468109139 468110981 1842 False 1347.000000 1814 96.6190 3125 5012 2 chr1B.!!$F2 1887
13 TraesCS3B01G337400 chr1B 100306931 100307477 546 False 911.000000 911 96.7150 3122 3669 1 chr1B.!!$F1 547
14 TraesCS3B01G337400 chr2D 111160338 111162044 1706 False 1305.000000 1725 95.8805 3124 5012 2 chr2D.!!$F2 1888
15 TraesCS3B01G337400 chr1A 575087682 575088748 1066 True 1646.000000 1646 94.4860 3943 5012 1 chr1A.!!$R2 1069
16 TraesCS3B01G337400 chr1A 251558212 251558883 671 False 352.500000 453 88.7825 6246 6813 2 chr1A.!!$F1 567
17 TraesCS3B01G337400 chr4B 10786810 10787345 535 True 891.000000 891 96.6480 3121 3656 1 chr4B.!!$R1 535
18 TraesCS3B01G337400 chr7D 37923917 37924459 542 False 865.000000 865 95.3960 3124 3666 1 chr7D.!!$F1 542
19 TraesCS3B01G337400 chr6D 76111641 76112237 596 False 736.000000 736 89.9670 6254 6813 1 chr6D.!!$F2 559
20 TraesCS3B01G337400 chr6D 336215569 336216099 530 False 261.000000 261 76.9780 6251 6770 1 chr6D.!!$F3 519
21 TraesCS3B01G337400 chr2A 31602810 31603407 597 False 595.000000 595 85.7380 6252 6813 1 chr2A.!!$F1 561
22 TraesCS3B01G337400 chr5A 427084318 427084854 536 True 243.000000 243 76.3440 6254 6770 1 chr5A.!!$R2 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.030235 CGTTGGCTGATCATGGCATG 59.970 55.000 21.42 21.42 39.67 4.06 F
110 111 0.179205 GTGCATGTTTCGAGAGCAGC 60.179 55.000 0.00 0.00 35.66 5.25 F
1887 1993 0.179045 AGGTCTGCGTGCCCATAATC 60.179 55.000 0.00 0.00 0.00 1.75 F
1894 2000 0.947244 CGTGCCCATAATCTTGGCTC 59.053 55.000 0.00 0.00 45.56 4.70 F
2104 2212 1.002468 CACCTTTGCCAGTGAGTTTCG 60.002 52.381 0.00 0.00 36.01 3.46 F
3364 3564 1.265635 CGCTCGTTCCAAATTGTCCAA 59.734 47.619 0.00 0.00 0.00 3.53 F
3415 3616 2.182284 CGGTTCGGCGTACCATCA 59.818 61.111 30.52 0.00 35.31 3.07 F
5164 5414 2.758423 GGCGTTTGGGAGTTGGATTTAT 59.242 45.455 0.00 0.00 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1288 1.139947 GAAGAACTCCTCCTCGCCG 59.860 63.158 0.00 0.00 0.00 6.46 R
2080 2188 0.954452 CTCACTGGCAAAGGTGGAAC 59.046 55.000 5.64 0.00 34.57 3.62 R
3075 3245 1.068741 GTCAGCCCTACAGGTATTCCG 59.931 57.143 0.00 0.00 38.26 4.30 R
3364 3564 1.213182 TCCCTCACTATGCTCGTCTCT 59.787 52.381 0.00 0.00 0.00 3.10 R
3471 3672 4.794439 TCATGCACGGGCTCGACG 62.794 66.667 15.95 3.92 41.91 5.12 R
5263 5525 4.082733 CCAGTCAGTCAATCAGTCTTACGA 60.083 45.833 0.00 0.00 0.00 3.43 R
5265 5527 5.392767 TCCAGTCAGTCAATCAGTCTTAC 57.607 43.478 0.00 0.00 0.00 2.34 R
6230 6500 0.563173 TCCACAACCCCAATTCCCAA 59.437 50.000 0.00 0.00 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.249309 CACTTGCAGACGCGTTGG 59.751 61.111 15.53 10.26 42.97 3.77
18 19 3.649986 ACTTGCAGACGCGTTGGC 61.650 61.111 23.76 23.76 42.97 4.52
19 20 3.349006 CTTGCAGACGCGTTGGCT 61.349 61.111 28.16 14.19 42.97 4.75
20 21 3.584250 CTTGCAGACGCGTTGGCTG 62.584 63.158 28.16 23.91 42.97 4.85
21 22 4.600576 TGCAGACGCGTTGGCTGA 62.601 61.111 28.16 12.92 42.97 4.26
22 23 3.121030 GCAGACGCGTTGGCTGAT 61.121 61.111 25.36 0.00 36.88 2.90
23 24 3.084579 CAGACGCGTTGGCTGATC 58.915 61.111 15.53 0.00 36.88 2.92
24 25 1.737735 CAGACGCGTTGGCTGATCA 60.738 57.895 15.53 0.00 36.88 2.92
25 26 1.086067 CAGACGCGTTGGCTGATCAT 61.086 55.000 15.53 0.00 36.88 2.45
26 27 1.086067 AGACGCGTTGGCTGATCATG 61.086 55.000 15.53 0.00 36.88 3.07
27 28 2.040213 GACGCGTTGGCTGATCATGG 62.040 60.000 15.53 0.00 36.88 3.66
28 29 2.410469 GCGTTGGCTGATCATGGC 59.590 61.111 0.00 3.81 35.83 4.40
29 30 2.409055 GCGTTGGCTGATCATGGCA 61.409 57.895 14.46 14.46 38.22 4.92
30 31 1.731433 GCGTTGGCTGATCATGGCAT 61.731 55.000 17.63 0.00 39.67 4.40
31 32 0.030235 CGTTGGCTGATCATGGCATG 59.970 55.000 21.42 21.42 39.67 4.06
32 33 0.249322 GTTGGCTGATCATGGCATGC 60.249 55.000 22.56 9.90 39.67 4.06
33 34 0.684805 TTGGCTGATCATGGCATGCA 60.685 50.000 22.56 14.25 39.67 3.96
34 35 0.684805 TGGCTGATCATGGCATGCAA 60.685 50.000 22.56 9.21 35.04 4.08
35 36 0.462375 GGCTGATCATGGCATGCAAA 59.538 50.000 22.56 7.48 0.00 3.68
36 37 1.134640 GGCTGATCATGGCATGCAAAA 60.135 47.619 22.56 5.80 0.00 2.44
37 38 2.484770 GGCTGATCATGGCATGCAAAAT 60.485 45.455 22.56 10.73 0.00 1.82
38 39 3.202906 GCTGATCATGGCATGCAAAATT 58.797 40.909 22.56 0.11 0.00 1.82
39 40 3.002246 GCTGATCATGGCATGCAAAATTG 59.998 43.478 22.56 3.64 0.00 2.32
40 41 4.188462 CTGATCATGGCATGCAAAATTGT 58.812 39.130 22.56 0.00 0.00 2.71
41 42 4.580868 TGATCATGGCATGCAAAATTGTT 58.419 34.783 22.56 0.00 0.00 2.83
42 43 5.004448 TGATCATGGCATGCAAAATTGTTT 58.996 33.333 22.56 0.00 0.00 2.83
43 44 4.750952 TCATGGCATGCAAAATTGTTTG 57.249 36.364 22.56 1.17 45.88 2.93
44 45 4.386711 TCATGGCATGCAAAATTGTTTGA 58.613 34.783 22.56 3.93 45.99 2.69
45 46 4.452795 TCATGGCATGCAAAATTGTTTGAG 59.547 37.500 22.56 0.00 45.99 3.02
46 47 4.069300 TGGCATGCAAAATTGTTTGAGA 57.931 36.364 21.36 0.00 45.99 3.27
47 48 4.059511 TGGCATGCAAAATTGTTTGAGAG 58.940 39.130 21.36 0.00 45.99 3.20
48 49 4.202233 TGGCATGCAAAATTGTTTGAGAGA 60.202 37.500 21.36 0.00 45.99 3.10
49 50 4.751098 GGCATGCAAAATTGTTTGAGAGAA 59.249 37.500 21.36 0.00 45.99 2.87
50 51 5.410439 GGCATGCAAAATTGTTTGAGAGAAT 59.590 36.000 21.36 0.00 45.99 2.40
51 52 6.591062 GGCATGCAAAATTGTTTGAGAGAATA 59.409 34.615 21.36 0.00 45.99 1.75
52 53 7.279313 GGCATGCAAAATTGTTTGAGAGAATAT 59.721 33.333 21.36 0.00 45.99 1.28
53 54 8.662141 GCATGCAAAATTGTTTGAGAGAATATT 58.338 29.630 14.21 0.00 45.99 1.28
79 80 6.509418 TTTTAAAATAGCAGACGCATTCCT 57.491 33.333 0.00 0.00 42.27 3.36
80 81 5.734855 TTAAAATAGCAGACGCATTCCTC 57.265 39.130 0.00 0.00 42.27 3.71
81 82 3.550437 AAATAGCAGACGCATTCCTCT 57.450 42.857 0.00 0.00 42.27 3.69
82 83 4.672587 AAATAGCAGACGCATTCCTCTA 57.327 40.909 0.00 0.00 42.27 2.43
83 84 4.881019 AATAGCAGACGCATTCCTCTAT 57.119 40.909 0.00 0.00 42.27 1.98
84 85 2.810439 AGCAGACGCATTCCTCTATC 57.190 50.000 0.00 0.00 42.27 2.08
85 86 2.315176 AGCAGACGCATTCCTCTATCT 58.685 47.619 0.00 0.00 42.27 1.98
86 87 3.491342 AGCAGACGCATTCCTCTATCTA 58.509 45.455 0.00 0.00 42.27 1.98
87 88 4.085733 AGCAGACGCATTCCTCTATCTAT 58.914 43.478 0.00 0.00 42.27 1.98
88 89 5.257262 AGCAGACGCATTCCTCTATCTATA 58.743 41.667 0.00 0.00 42.27 1.31
89 90 5.890985 AGCAGACGCATTCCTCTATCTATAT 59.109 40.000 0.00 0.00 42.27 0.86
90 91 7.057264 AGCAGACGCATTCCTCTATCTATATA 58.943 38.462 0.00 0.00 42.27 0.86
91 92 7.228507 AGCAGACGCATTCCTCTATCTATATAG 59.771 40.741 3.10 3.10 42.27 1.31
92 93 7.012894 GCAGACGCATTCCTCTATCTATATAGT 59.987 40.741 9.58 0.62 36.26 2.12
93 94 8.341903 CAGACGCATTCCTCTATCTATATAGTG 58.658 40.741 9.58 2.51 37.06 2.74
94 95 7.012894 AGACGCATTCCTCTATCTATATAGTGC 59.987 40.741 9.58 7.67 37.06 4.40
95 96 6.603599 ACGCATTCCTCTATCTATATAGTGCA 59.396 38.462 9.58 0.00 34.62 4.57
96 97 7.286546 ACGCATTCCTCTATCTATATAGTGCAT 59.713 37.037 9.58 0.00 34.62 3.96
97 98 7.594386 CGCATTCCTCTATCTATATAGTGCATG 59.406 40.741 9.58 0.00 34.62 4.06
98 99 8.420222 GCATTCCTCTATCTATATAGTGCATGT 58.580 37.037 9.58 0.00 34.87 3.21
102 103 8.678199 TCCTCTATCTATATAGTGCATGTTTCG 58.322 37.037 9.58 0.00 37.06 3.46
103 104 8.678199 CCTCTATCTATATAGTGCATGTTTCGA 58.322 37.037 9.58 0.00 37.06 3.71
104 105 9.715123 CTCTATCTATATAGTGCATGTTTCGAG 57.285 37.037 9.58 0.63 37.06 4.04
105 106 9.449719 TCTATCTATATAGTGCATGTTTCGAGA 57.550 33.333 9.58 0.00 37.06 4.04
106 107 9.715123 CTATCTATATAGTGCATGTTTCGAGAG 57.285 37.037 9.58 0.00 31.96 3.20
107 108 6.382608 TCTATATAGTGCATGTTTCGAGAGC 58.617 40.000 9.58 0.00 0.00 4.09
108 109 2.741759 TAGTGCATGTTTCGAGAGCA 57.258 45.000 0.00 0.00 0.00 4.26
109 110 1.436600 AGTGCATGTTTCGAGAGCAG 58.563 50.000 0.00 0.00 35.66 4.24
110 111 0.179205 GTGCATGTTTCGAGAGCAGC 60.179 55.000 0.00 0.00 35.66 5.25
118 119 3.874543 TGTTTCGAGAGCAGCAAGTAAAA 59.125 39.130 0.00 0.00 0.00 1.52
124 125 2.291741 AGAGCAGCAAGTAAAACTGTGC 59.708 45.455 0.00 6.27 34.63 4.57
146 149 4.321745 GCAATGTGCGAGACAATACAAAAG 59.678 41.667 0.00 0.00 38.36 2.27
147 150 5.688823 CAATGTGCGAGACAATACAAAAGA 58.311 37.500 0.00 0.00 38.36 2.52
148 151 4.990543 TGTGCGAGACAATACAAAAGAG 57.009 40.909 0.00 0.00 0.00 2.85
155 158 6.032880 GCGAGACAATACAAAAGAGCAAAATC 59.967 38.462 0.00 0.00 0.00 2.17
159 162 9.066892 AGACAATACAAAAGAGCAAAATCTGTA 57.933 29.630 0.00 0.00 0.00 2.74
250 254 3.591527 AGACCATGGGACCATTTCTGTTA 59.408 43.478 18.09 0.00 33.90 2.41
251 255 4.044065 AGACCATGGGACCATTTCTGTTAA 59.956 41.667 18.09 0.00 33.90 2.01
252 256 4.344104 ACCATGGGACCATTTCTGTTAAG 58.656 43.478 18.09 0.00 33.90 1.85
253 257 3.131046 CCATGGGACCATTTCTGTTAAGC 59.869 47.826 2.85 0.00 33.90 3.09
255 259 2.039216 TGGGACCATTTCTGTTAAGCGA 59.961 45.455 0.00 0.00 0.00 4.93
257 261 3.694566 GGGACCATTTCTGTTAAGCGATT 59.305 43.478 0.00 0.00 0.00 3.34
258 262 4.201920 GGGACCATTTCTGTTAAGCGATTC 60.202 45.833 0.00 0.00 0.00 2.52
260 264 5.066505 GGACCATTTCTGTTAAGCGATTCAT 59.933 40.000 0.00 0.00 0.00 2.57
268 272 8.662781 TTCTGTTAAGCGATTCATATTTAGCT 57.337 30.769 0.00 0.00 36.40 3.32
399 403 2.311294 GCTATGAAAGCGCGGATGT 58.689 52.632 8.83 0.00 42.53 3.06
411 415 2.839474 CGCGGATGTCTTCAACTTTTC 58.161 47.619 0.00 0.00 0.00 2.29
415 419 4.788521 GCGGATGTCTTCAACTTTTCGTTT 60.789 41.667 0.00 0.00 32.27 3.60
419 423 4.989044 TGTCTTCAACTTTTCGTTTTCCC 58.011 39.130 0.00 0.00 32.27 3.97
420 424 4.703093 TGTCTTCAACTTTTCGTTTTCCCT 59.297 37.500 0.00 0.00 32.27 4.20
425 429 7.971722 TCTTCAACTTTTCGTTTTCCCTTAAAG 59.028 33.333 0.00 0.00 32.27 1.85
426 430 7.160547 TCAACTTTTCGTTTTCCCTTAAAGT 57.839 32.000 0.00 0.00 37.41 2.66
427 431 7.252708 TCAACTTTTCGTTTTCCCTTAAAGTC 58.747 34.615 0.00 0.00 35.46 3.01
428 432 7.121611 TCAACTTTTCGTTTTCCCTTAAAGTCT 59.878 33.333 0.00 0.00 35.46 3.24
431 435 9.128404 ACTTTTCGTTTTCCCTTAAAGTCTTAT 57.872 29.630 0.00 0.00 32.14 1.73
433 437 9.955208 TTTTCGTTTTCCCTTAAAGTCTTATTC 57.045 29.630 0.00 0.00 0.00 1.75
484 504 6.029607 CGGTATGATCAACAGGTCAAAATTG 58.970 40.000 0.00 0.00 0.00 2.32
491 511 6.331369 TCAACAGGTCAAAATTGAGATTCC 57.669 37.500 0.00 0.00 37.98 3.01
518 540 3.242413 CGGCGTGTAGAAATCATTCCTTG 60.242 47.826 0.00 0.00 36.12 3.61
524 546 7.584987 CGTGTAGAAATCATTCCTTGTTCTTT 58.415 34.615 0.00 0.00 36.12 2.52
525 547 8.076178 CGTGTAGAAATCATTCCTTGTTCTTTT 58.924 33.333 0.00 0.00 36.12 2.27
548 573 2.095567 TCTTCGAAGGCACGTACTGTAC 60.096 50.000 24.37 7.90 34.70 2.90
551 576 1.334054 GAAGGCACGTACTGTACACG 58.666 55.000 17.35 9.86 44.80 4.49
575 600 0.969149 TCACTGTGCTCACGGAGAAT 59.031 50.000 15.10 0.00 40.06 2.40
576 601 2.167662 TCACTGTGCTCACGGAGAATA 58.832 47.619 15.10 0.00 40.06 1.75
577 602 2.760650 TCACTGTGCTCACGGAGAATAT 59.239 45.455 15.10 0.00 40.06 1.28
578 603 3.119291 CACTGTGCTCACGGAGAATATC 58.881 50.000 15.10 0.00 40.06 1.63
579 604 2.760650 ACTGTGCTCACGGAGAATATCA 59.239 45.455 15.10 0.00 40.06 2.15
580 605 3.195610 ACTGTGCTCACGGAGAATATCAA 59.804 43.478 15.10 0.00 40.06 2.57
581 606 3.521560 TGTGCTCACGGAGAATATCAAC 58.478 45.455 5.24 0.00 0.00 3.18
582 607 3.056179 TGTGCTCACGGAGAATATCAACA 60.056 43.478 5.24 0.00 0.00 3.33
583 608 4.122776 GTGCTCACGGAGAATATCAACAT 58.877 43.478 5.24 0.00 0.00 2.71
584 609 4.025396 GTGCTCACGGAGAATATCAACATG 60.025 45.833 5.24 0.00 0.00 3.21
585 610 3.059325 GCTCACGGAGAATATCAACATGC 60.059 47.826 5.24 0.00 0.00 4.06
586 611 4.122046 CTCACGGAGAATATCAACATGCA 58.878 43.478 0.00 0.00 0.00 3.96
587 612 3.871006 TCACGGAGAATATCAACATGCAC 59.129 43.478 0.00 0.00 0.00 4.57
588 613 3.873361 CACGGAGAATATCAACATGCACT 59.127 43.478 0.00 0.00 0.00 4.40
589 614 3.873361 ACGGAGAATATCAACATGCACTG 59.127 43.478 0.00 0.00 0.00 3.66
590 615 3.303593 CGGAGAATATCAACATGCACTGC 60.304 47.826 0.00 0.00 0.00 4.40
591 616 3.881688 GGAGAATATCAACATGCACTGCT 59.118 43.478 1.98 0.00 0.00 4.24
592 617 4.261072 GGAGAATATCAACATGCACTGCTG 60.261 45.833 1.98 1.12 0.00 4.41
593 618 4.267536 AGAATATCAACATGCACTGCTGT 58.732 39.130 1.98 1.75 0.00 4.40
594 619 4.334759 AGAATATCAACATGCACTGCTGTC 59.665 41.667 1.98 0.00 0.00 3.51
595 620 0.800631 ATCAACATGCACTGCTGTCG 59.199 50.000 1.98 0.00 0.00 4.35
596 621 1.441515 CAACATGCACTGCTGTCGC 60.442 57.895 1.98 9.92 0.00 5.19
597 622 2.620112 AACATGCACTGCTGTCGCC 61.620 57.895 1.98 0.00 34.43 5.54
598 623 4.156622 CATGCACTGCTGTCGCCG 62.157 66.667 1.98 0.00 34.43 6.46
602 627 2.664851 CACTGCTGTCGCCGGAAA 60.665 61.111 5.05 0.00 34.43 3.13
603 628 2.034879 CACTGCTGTCGCCGGAAAT 61.035 57.895 5.05 0.00 34.43 2.17
604 629 0.739462 CACTGCTGTCGCCGGAAATA 60.739 55.000 5.05 0.00 34.43 1.40
605 630 0.460284 ACTGCTGTCGCCGGAAATAG 60.460 55.000 5.05 0.00 34.43 1.73
606 631 1.153449 TGCTGTCGCCGGAAATAGG 60.153 57.895 5.05 0.00 34.43 2.57
616 641 3.311486 CCGGAAATAGGCAAGCAAAAA 57.689 42.857 0.00 0.00 0.00 1.94
617 642 3.860641 CCGGAAATAGGCAAGCAAAAAT 58.139 40.909 0.00 0.00 0.00 1.82
618 643 5.004922 CCGGAAATAGGCAAGCAAAAATA 57.995 39.130 0.00 0.00 0.00 1.40
619 644 5.415221 CCGGAAATAGGCAAGCAAAAATAA 58.585 37.500 0.00 0.00 0.00 1.40
620 645 5.872070 CCGGAAATAGGCAAGCAAAAATAAA 59.128 36.000 0.00 0.00 0.00 1.40
621 646 6.538381 CCGGAAATAGGCAAGCAAAAATAAAT 59.462 34.615 0.00 0.00 0.00 1.40
622 647 7.708752 CCGGAAATAGGCAAGCAAAAATAAATA 59.291 33.333 0.00 0.00 0.00 1.40
623 648 9.092876 CGGAAATAGGCAAGCAAAAATAAATAA 57.907 29.630 0.00 0.00 0.00 1.40
628 653 7.864108 AGGCAAGCAAAAATAAATAAATCCC 57.136 32.000 0.00 0.00 0.00 3.85
629 654 7.401246 AGGCAAGCAAAAATAAATAAATCCCA 58.599 30.769 0.00 0.00 0.00 4.37
630 655 8.054572 AGGCAAGCAAAAATAAATAAATCCCAT 58.945 29.630 0.00 0.00 0.00 4.00
631 656 8.130469 GGCAAGCAAAAATAAATAAATCCCATG 58.870 33.333 0.00 0.00 0.00 3.66
632 657 8.891720 GCAAGCAAAAATAAATAAATCCCATGA 58.108 29.630 0.00 0.00 0.00 3.07
643 668 6.655078 ATAAATCCCATGAAGTAACATGCC 57.345 37.500 0.00 0.00 44.11 4.40
644 669 3.668141 ATCCCATGAAGTAACATGCCA 57.332 42.857 0.00 0.00 44.11 4.92
645 670 2.722094 TCCCATGAAGTAACATGCCAC 58.278 47.619 0.00 0.00 44.11 5.01
646 671 2.308570 TCCCATGAAGTAACATGCCACT 59.691 45.455 0.00 0.00 44.11 4.00
647 672 2.684881 CCCATGAAGTAACATGCCACTC 59.315 50.000 0.00 0.00 44.11 3.51
648 673 3.614092 CCATGAAGTAACATGCCACTCT 58.386 45.455 0.00 0.00 44.11 3.24
649 674 4.384098 CCCATGAAGTAACATGCCACTCTA 60.384 45.833 0.00 0.00 44.11 2.43
650 675 4.813161 CCATGAAGTAACATGCCACTCTAG 59.187 45.833 0.00 0.00 44.11 2.43
651 676 3.861840 TGAAGTAACATGCCACTCTAGC 58.138 45.455 0.00 0.00 0.00 3.42
652 677 3.515502 TGAAGTAACATGCCACTCTAGCT 59.484 43.478 0.00 0.00 0.00 3.32
653 678 4.709886 TGAAGTAACATGCCACTCTAGCTA 59.290 41.667 0.00 0.00 0.00 3.32
654 679 4.927978 AGTAACATGCCACTCTAGCTAG 57.072 45.455 15.01 15.01 0.00 3.42
655 680 2.611225 AACATGCCACTCTAGCTAGC 57.389 50.000 16.35 6.62 0.00 3.42
656 681 1.786937 ACATGCCACTCTAGCTAGCT 58.213 50.000 23.12 23.12 0.00 3.32
657 682 1.686052 ACATGCCACTCTAGCTAGCTC 59.314 52.381 23.26 5.36 0.00 4.09
658 683 1.685517 CATGCCACTCTAGCTAGCTCA 59.314 52.381 23.26 11.66 0.00 4.26
659 684 2.079170 TGCCACTCTAGCTAGCTCAT 57.921 50.000 23.26 0.00 0.00 2.90
660 685 1.685517 TGCCACTCTAGCTAGCTCATG 59.314 52.381 23.26 14.62 0.00 3.07
661 686 1.686052 GCCACTCTAGCTAGCTCATGT 59.314 52.381 23.26 14.95 0.00 3.21
662 687 2.887783 GCCACTCTAGCTAGCTCATGTA 59.112 50.000 23.26 1.52 0.00 2.29
663 688 3.057596 GCCACTCTAGCTAGCTCATGTAG 60.058 52.174 23.26 13.01 0.00 2.74
664 689 4.141287 CCACTCTAGCTAGCTCATGTAGT 58.859 47.826 23.26 14.91 0.00 2.73
679 704 3.701205 TGTAGTCATGTTGCAGGTGAT 57.299 42.857 0.00 0.00 0.00 3.06
687 712 5.294060 GTCATGTTGCAGGTGATTTTTGTTT 59.706 36.000 0.00 0.00 0.00 2.83
690 715 3.791973 TGCAGGTGATTTTTGTTTCGT 57.208 38.095 0.00 0.00 0.00 3.85
691 716 4.902443 TGCAGGTGATTTTTGTTTCGTA 57.098 36.364 0.00 0.00 0.00 3.43
693 718 4.336993 TGCAGGTGATTTTTGTTTCGTACT 59.663 37.500 0.00 0.00 0.00 2.73
694 719 4.675114 GCAGGTGATTTTTGTTTCGTACTG 59.325 41.667 0.00 0.00 0.00 2.74
695 720 4.675114 CAGGTGATTTTTGTTTCGTACTGC 59.325 41.667 0.00 0.00 0.00 4.40
697 722 4.498345 GGTGATTTTTGTTTCGTACTGCCA 60.498 41.667 0.00 0.00 0.00 4.92
698 723 4.675114 GTGATTTTTGTTTCGTACTGCCAG 59.325 41.667 0.00 0.00 0.00 4.85
699 724 4.576873 TGATTTTTGTTTCGTACTGCCAGA 59.423 37.500 0.00 0.00 0.00 3.86
700 725 3.955771 TTTTGTTTCGTACTGCCAGAC 57.044 42.857 0.00 0.00 0.00 3.51
702 727 0.942410 TGTTTCGTACTGCCAGACGC 60.942 55.000 0.00 0.00 38.93 5.19
703 728 0.666577 GTTTCGTACTGCCAGACGCT 60.667 55.000 0.00 0.00 38.93 5.07
705 730 1.520600 TTCGTACTGCCAGACGCTCA 61.521 55.000 0.00 0.00 38.93 4.26
706 731 1.515088 CGTACTGCCAGACGCTCAG 60.515 63.158 0.00 0.00 38.78 3.35
709 734 4.079850 CTGCCAGACGCTCAGCCT 62.080 66.667 0.00 0.00 38.78 4.58
784 868 2.273179 TGCGTCCGTCAGCCTAACT 61.273 57.895 0.00 0.00 0.00 2.24
796 880 2.871182 GCCTAACTAAATTGGCAGCC 57.129 50.000 3.66 3.66 44.34 4.85
797 881 2.099405 GCCTAACTAAATTGGCAGCCA 58.901 47.619 11.22 11.22 44.34 4.75
799 883 2.099756 CCTAACTAAATTGGCAGCCAGC 59.900 50.000 15.50 0.00 44.65 4.85
849 934 7.502120 TTCTTGGATACGTATACTCCACTAC 57.498 40.000 18.49 0.00 38.75 2.73
1167 1252 0.307146 GATACGAGTTCGAGACCCGG 59.693 60.000 8.72 0.00 43.02 5.73
1203 1288 0.687354 TGGACCACTTCAGCTTCTCC 59.313 55.000 0.00 0.00 0.00 3.71
1239 1324 2.202623 CAGCAGCGGTACCTCGTC 60.203 66.667 10.90 0.00 0.00 4.20
1669 1766 2.226962 TACGGTGGAAGTAAGAGCCT 57.773 50.000 0.00 0.00 0.00 4.58
1670 1767 2.226962 ACGGTGGAAGTAAGAGCCTA 57.773 50.000 0.00 0.00 0.00 3.93
1693 1798 9.315363 CCTATAGTATCTTCAGTTATCTTGGGT 57.685 37.037 0.00 0.00 0.00 4.51
1704 1810 5.525378 CAGTTATCTTGGGTGTCTATTCTGC 59.475 44.000 0.00 0.00 0.00 4.26
1880 1986 1.810151 TGATTTTAAGGTCTGCGTGCC 59.190 47.619 0.00 0.00 0.00 5.01
1887 1993 0.179045 AGGTCTGCGTGCCCATAATC 60.179 55.000 0.00 0.00 0.00 1.75
1894 2000 0.947244 CGTGCCCATAATCTTGGCTC 59.053 55.000 0.00 0.00 45.56 4.70
1952 2060 4.709397 TCATTGTTTTGGAAACAGGACACT 59.291 37.500 6.38 0.00 44.54 3.55
1987 2095 8.990163 AGTTTTTCTTATGTGTTTAGAGGGAA 57.010 30.769 0.00 0.00 0.00 3.97
2080 2188 5.205565 GGTCTTCTGAAACTAAGCAAAACG 58.794 41.667 0.00 0.00 0.00 3.60
2104 2212 1.002468 CACCTTTGCCAGTGAGTTTCG 60.002 52.381 0.00 0.00 36.01 3.46
2203 2312 2.060383 GGGGCCCTTTCAGATTGGC 61.060 63.158 24.38 0.00 43.26 4.52
2279 2388 1.945354 CTCATGCCTTTGCCTGCCAG 61.945 60.000 0.00 0.00 33.62 4.85
2313 2422 5.238868 GGAAGTTAGTTCTTGAACCCTTGTC 59.761 44.000 9.58 3.58 35.25 3.18
2320 2429 2.642311 TCTTGAACCCTTGTCTGCCATA 59.358 45.455 0.00 0.00 0.00 2.74
2332 2441 6.183360 CCTTGTCTGCCATAAATCTTTTCGAT 60.183 38.462 0.00 0.00 0.00 3.59
2341 2450 8.131100 GCCATAAATCTTTTCGATCATTTCTGA 58.869 33.333 0.00 0.00 35.41 3.27
2367 2476 6.036470 CGTGCTAGTATTCAGTGAGAATTCA 58.964 40.000 8.44 0.00 44.48 2.57
2404 2514 8.739972 CCAAAGGTATAACAAAGAGCTTATGTT 58.260 33.333 14.50 14.50 36.16 2.71
2433 2543 2.727798 GCAATGACAATCTTGTGTGTGC 59.272 45.455 0.00 3.49 42.43 4.57
2434 2544 3.796165 GCAATGACAATCTTGTGTGTGCA 60.796 43.478 0.00 0.00 42.43 4.57
2435 2545 3.909776 ATGACAATCTTGTGTGTGCAG 57.090 42.857 0.00 0.00 42.43 4.41
2436 2546 2.642427 TGACAATCTTGTGTGTGCAGT 58.358 42.857 0.00 0.00 42.43 4.40
2437 2547 2.355444 TGACAATCTTGTGTGTGCAGTG 59.645 45.455 0.00 0.00 42.43 3.66
2438 2548 2.355756 GACAATCTTGTGTGTGCAGTGT 59.644 45.455 0.00 0.00 42.43 3.55
2439 2549 2.097954 ACAATCTTGTGTGTGCAGTGTG 59.902 45.455 0.00 0.00 40.49 3.82
2510 2679 4.954826 ACTATCAGGGCGTAGTTTCTTAGT 59.045 41.667 0.00 0.00 0.00 2.24
2531 2700 4.324267 GTGGCATCACTACTTACTTTGGT 58.676 43.478 0.00 0.00 40.58 3.67
2611 2780 6.202954 GCAGTATACTGGAACGAATTTATGCT 59.797 38.462 29.45 0.00 43.94 3.79
2894 3064 4.649218 TCCACCAGATGAATTCGACTATGA 59.351 41.667 0.04 0.00 0.00 2.15
3042 3212 5.660460 ACAACAGAATTTTCTCAACCAACC 58.340 37.500 0.00 0.00 34.74 3.77
3364 3564 1.265635 CGCTCGTTCCAAATTGTCCAA 59.734 47.619 0.00 0.00 0.00 3.53
3415 3616 2.182284 CGGTTCGGCGTACCATCA 59.818 61.111 30.52 0.00 35.31 3.07
3519 3721 4.531854 TCAATGACCAAAGACCAAAGACA 58.468 39.130 0.00 0.00 0.00 3.41
4572 4821 3.056328 GGACTTGACAAGGGCCGC 61.056 66.667 19.16 3.49 0.00 6.53
5032 5281 5.499004 GGTAAACCCTGATATGGATGCTA 57.501 43.478 0.00 0.00 0.00 3.49
5035 5284 7.630082 GGTAAACCCTGATATGGATGCTATTA 58.370 38.462 0.00 0.00 0.00 0.98
5039 5288 6.267635 ACCCTGATATGGATGCTATTAGTCT 58.732 40.000 0.00 0.00 0.00 3.24
5040 5289 6.732862 ACCCTGATATGGATGCTATTAGTCTT 59.267 38.462 0.00 0.00 0.00 3.01
5164 5414 2.758423 GGCGTTTGGGAGTTGGATTTAT 59.242 45.455 0.00 0.00 0.00 1.40
5233 5495 7.190920 ACGCTCTTTATGCTATCCAATTAAC 57.809 36.000 0.00 0.00 0.00 2.01
5237 5499 9.007901 GCTCTTTATGCTATCCAATTAACTGAT 57.992 33.333 0.00 0.00 0.00 2.90
5264 5526 2.979240 CTTTGGTAAGCCTCAGAGGTC 58.021 52.381 18.37 10.25 37.80 3.85
5265 5527 0.895530 TTGGTAAGCCTCAGAGGTCG 59.104 55.000 18.37 0.00 37.80 4.79
5266 5528 0.251653 TGGTAAGCCTCAGAGGTCGT 60.252 55.000 18.37 10.76 37.80 4.34
5285 5547 5.048153 TCGTAAGACTGATTGACTGACTG 57.952 43.478 0.00 0.00 45.01 3.51
5604 5866 5.163754 GGTTTCAAGCTGTCATACCATACAC 60.164 44.000 0.00 0.00 0.00 2.90
5613 5875 5.670485 TGTCATACCATACACAGTTCATCC 58.330 41.667 0.00 0.00 0.00 3.51
5800 6062 1.444119 GCGCAACCAACAAGGACTCA 61.444 55.000 0.30 0.00 41.22 3.41
5813 6075 2.406559 AGGACTCAGCTGCCTCATAAT 58.593 47.619 9.47 0.00 0.00 1.28
5833 6095 1.239347 GAAACCACACTGCTCCCTTC 58.761 55.000 0.00 0.00 0.00 3.46
5834 6096 0.846693 AAACCACACTGCTCCCTTCT 59.153 50.000 0.00 0.00 0.00 2.85
5835 6097 0.846693 AACCACACTGCTCCCTTCTT 59.153 50.000 0.00 0.00 0.00 2.52
5848 6110 2.026636 TCCCTTCTTACCATTTGTCCCG 60.027 50.000 0.00 0.00 0.00 5.14
5852 6114 4.324267 CTTCTTACCATTTGTCCCGAAGT 58.676 43.478 0.00 0.00 0.00 3.01
5856 6118 0.109781 CCATTTGTCCCGAAGTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
5937 6200 0.250640 CAGCAGTTCAACTCCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
5941 6204 2.355108 GCAGTTCAACTCCCAGCTATCA 60.355 50.000 0.00 0.00 0.00 2.15
5988 6251 1.737735 GGCCGTAACACCGTACACC 60.738 63.158 0.00 0.00 0.00 4.16
5997 6260 1.446618 ACCGTACACCGATTTCGCC 60.447 57.895 0.00 0.00 39.56 5.54
6004 6267 0.721718 CACCGATTTCGCCTTGACTC 59.278 55.000 0.00 0.00 38.18 3.36
6006 6269 1.002087 ACCGATTTCGCCTTGACTCTT 59.998 47.619 0.00 0.00 38.18 2.85
6011 6274 0.391597 TTCGCCTTGACTCTTCGGTT 59.608 50.000 0.00 0.00 0.00 4.44
6013 6276 1.202604 TCGCCTTGACTCTTCGGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
6065 6330 0.662619 TGCGTTGCTCTTGGTTTCAG 59.337 50.000 0.00 0.00 0.00 3.02
6077 6342 1.143684 TGGTTTCAGAAAGAGCAGCCT 59.856 47.619 0.00 0.00 0.00 4.58
6096 6361 2.626266 CCTATGATGTTGTGCATGGCAT 59.374 45.455 0.00 0.00 41.91 4.40
6098 6363 1.258676 TGATGTTGTGCATGGCATGT 58.741 45.000 26.94 6.77 41.91 3.21
6102 6367 2.237643 TGTTGTGCATGGCATGTAAGT 58.762 42.857 26.94 0.00 41.91 2.24
6128 6398 4.977347 GGAACTAACGCTAGCAGAATAGAC 59.023 45.833 16.45 9.78 0.00 2.59
6130 6400 5.578005 ACTAACGCTAGCAGAATAGACAA 57.422 39.130 16.45 0.00 0.00 3.18
6143 6413 5.643777 CAGAATAGACAACATCGGGAGTTTT 59.356 40.000 0.00 0.00 0.00 2.43
6188 6458 9.733556 TTTTAATGTCCTCTTGTGTGTGTATAT 57.266 29.630 0.00 0.00 0.00 0.86
6190 6460 5.339008 TGTCCTCTTGTGTGTGTATATCC 57.661 43.478 0.00 0.00 0.00 2.59
6192 6462 3.383505 TCCTCTTGTGTGTGTATATCCGG 59.616 47.826 0.00 0.00 0.00 5.14
6209 6479 0.671781 CGGTCAGCTGTGGAGAAAGG 60.672 60.000 14.67 0.00 0.00 3.11
6212 6482 2.290577 GGTCAGCTGTGGAGAAAGGAAT 60.291 50.000 14.67 0.00 0.00 3.01
6213 6483 3.006247 GTCAGCTGTGGAGAAAGGAATC 58.994 50.000 14.67 0.00 0.00 2.52
6214 6484 2.005451 CAGCTGTGGAGAAAGGAATCG 58.995 52.381 5.25 0.00 0.00 3.34
6215 6485 1.065854 AGCTGTGGAGAAAGGAATCGG 60.066 52.381 0.00 0.00 0.00 4.18
6216 6486 1.066143 GCTGTGGAGAAAGGAATCGGA 60.066 52.381 0.00 0.00 0.00 4.55
6217 6487 2.615493 GCTGTGGAGAAAGGAATCGGAA 60.615 50.000 0.00 0.00 0.00 4.30
6218 6488 3.003480 CTGTGGAGAAAGGAATCGGAAC 58.997 50.000 0.00 0.00 0.00 3.62
6219 6489 2.637872 TGTGGAGAAAGGAATCGGAACT 59.362 45.455 0.00 0.00 0.00 3.01
6220 6490 3.072476 TGTGGAGAAAGGAATCGGAACTT 59.928 43.478 0.00 0.00 0.00 2.66
6221 6491 3.685272 GTGGAGAAAGGAATCGGAACTTC 59.315 47.826 0.00 0.00 0.00 3.01
6222 6492 2.930682 GGAGAAAGGAATCGGAACTTCG 59.069 50.000 0.00 0.00 0.00 3.79
6223 6493 2.930682 GAGAAAGGAATCGGAACTTCGG 59.069 50.000 0.00 0.00 0.00 4.30
6224 6494 2.565834 AGAAAGGAATCGGAACTTCGGA 59.434 45.455 1.83 1.83 0.00 4.55
6225 6495 3.007614 AGAAAGGAATCGGAACTTCGGAA 59.992 43.478 3.38 0.00 29.49 4.30
6226 6496 2.381725 AGGAATCGGAACTTCGGAAC 57.618 50.000 3.38 2.08 29.49 3.62
6227 6497 1.900486 AGGAATCGGAACTTCGGAACT 59.100 47.619 3.38 0.99 29.49 3.01
6228 6498 2.000447 GGAATCGGAACTTCGGAACTG 59.000 52.381 3.38 0.00 29.49 3.16
6229 6499 2.612221 GGAATCGGAACTTCGGAACTGT 60.612 50.000 3.38 0.00 29.49 3.55
6230 6500 2.833631 ATCGGAACTTCGGAACTGTT 57.166 45.000 3.38 0.00 29.49 3.16
6231 6501 2.607631 TCGGAACTTCGGAACTGTTT 57.392 45.000 0.00 0.00 0.00 2.83
6232 6502 2.206750 TCGGAACTTCGGAACTGTTTG 58.793 47.619 0.00 0.00 0.00 2.93
6233 6503 1.263217 CGGAACTTCGGAACTGTTTGG 59.737 52.381 0.00 0.00 0.00 3.28
6234 6504 1.607148 GGAACTTCGGAACTGTTTGGG 59.393 52.381 0.00 0.00 0.00 4.12
6235 6505 2.567985 GAACTTCGGAACTGTTTGGGA 58.432 47.619 0.00 0.00 0.00 4.37
6236 6506 2.721425 ACTTCGGAACTGTTTGGGAA 57.279 45.000 0.00 0.00 0.00 3.97
6237 6507 3.223674 ACTTCGGAACTGTTTGGGAAT 57.776 42.857 0.00 0.00 0.00 3.01
6238 6508 3.562182 ACTTCGGAACTGTTTGGGAATT 58.438 40.909 0.00 0.00 0.00 2.17
6239 6509 3.317993 ACTTCGGAACTGTTTGGGAATTG 59.682 43.478 0.00 0.00 0.00 2.32
6240 6510 2.235016 TCGGAACTGTTTGGGAATTGG 58.765 47.619 0.00 0.00 0.00 3.16
6241 6511 1.272212 CGGAACTGTTTGGGAATTGGG 59.728 52.381 0.00 0.00 0.00 4.12
6242 6512 1.623311 GGAACTGTTTGGGAATTGGGG 59.377 52.381 0.00 0.00 0.00 4.96
6243 6513 2.325484 GAACTGTTTGGGAATTGGGGT 58.675 47.619 0.00 0.00 0.00 4.95
6244 6514 2.487746 ACTGTTTGGGAATTGGGGTT 57.512 45.000 0.00 0.00 0.00 4.11
6245 6515 2.046292 ACTGTTTGGGAATTGGGGTTG 58.954 47.619 0.00 0.00 0.00 3.77
6246 6516 2.046292 CTGTTTGGGAATTGGGGTTGT 58.954 47.619 0.00 0.00 0.00 3.32
6247 6517 1.765314 TGTTTGGGAATTGGGGTTGTG 59.235 47.619 0.00 0.00 0.00 3.33
6248 6518 1.071542 GTTTGGGAATTGGGGTTGTGG 59.928 52.381 0.00 0.00 0.00 4.17
6249 6519 0.563173 TTGGGAATTGGGGTTGTGGA 59.437 50.000 0.00 0.00 0.00 4.02
6250 6520 0.789687 TGGGAATTGGGGTTGTGGAT 59.210 50.000 0.00 0.00 0.00 3.41
6375 6645 4.240096 CTCAGCCCTATTTGCAAAACAAG 58.760 43.478 17.19 13.32 40.06 3.16
6390 6662 3.249189 AAGGCCCGCAACCAGAGA 61.249 61.111 0.00 0.00 0.00 3.10
6391 6663 2.829384 AAGGCCCGCAACCAGAGAA 61.829 57.895 0.00 0.00 0.00 2.87
6518 6823 2.260247 ATGCCAGACATGCACACAC 58.740 52.632 0.00 0.00 42.38 3.82
6519 6824 0.537828 ATGCCAGACATGCACACACA 60.538 50.000 0.00 0.00 42.38 3.72
6520 6825 0.750911 TGCCAGACATGCACACACAA 60.751 50.000 0.00 0.00 32.85 3.33
6637 6964 2.177950 GCAATGCCACAGACCAGAG 58.822 57.895 0.00 0.00 0.00 3.35
6721 7135 8.589335 ACTTCAACAACATGTACAGTAGTTAG 57.411 34.615 0.00 3.40 0.00 2.34
6800 7219 2.256117 AACCGCATTATGCTAGGGTC 57.744 50.000 15.54 0.00 42.25 4.46
6804 7223 2.808543 CCGCATTATGCTAGGGTCTTTC 59.191 50.000 15.54 0.00 42.25 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.249309 CCAACGCGTCTGCAAGTG 59.751 61.111 14.44 4.79 42.97 3.16
1 2 3.649986 GCCAACGCGTCTGCAAGT 61.650 61.111 23.14 0.00 42.97 3.16
2 3 3.349006 AGCCAACGCGTCTGCAAG 61.349 61.111 27.66 11.70 42.97 4.01
5 6 3.088500 GATCAGCCAACGCGTCTGC 62.089 63.158 21.28 21.28 41.18 4.26
6 7 1.086067 ATGATCAGCCAACGCGTCTG 61.086 55.000 14.44 16.47 41.18 3.51
8 9 1.349627 CATGATCAGCCAACGCGTC 59.650 57.895 14.44 0.00 41.18 5.19
9 10 2.108514 CCATGATCAGCCAACGCGT 61.109 57.895 5.58 5.58 41.18 6.01
10 11 2.711311 CCATGATCAGCCAACGCG 59.289 61.111 3.53 3.53 41.18 6.01
11 12 1.731433 ATGCCATGATCAGCCAACGC 61.731 55.000 0.09 0.00 0.00 4.84
12 13 0.030235 CATGCCATGATCAGCCAACG 59.970 55.000 0.00 0.00 0.00 4.10
13 14 0.249322 GCATGCCATGATCAGCCAAC 60.249 55.000 9.33 0.00 0.00 3.77
14 15 0.684805 TGCATGCCATGATCAGCCAA 60.685 50.000 16.68 0.00 0.00 4.52
15 16 0.684805 TTGCATGCCATGATCAGCCA 60.685 50.000 16.68 0.00 0.00 4.75
16 17 0.462375 TTTGCATGCCATGATCAGCC 59.538 50.000 16.68 0.00 0.00 4.85
17 18 2.303163 TTTTGCATGCCATGATCAGC 57.697 45.000 16.68 0.09 0.00 4.26
18 19 4.188462 ACAATTTTGCATGCCATGATCAG 58.812 39.130 16.68 0.92 0.00 2.90
19 20 4.209307 ACAATTTTGCATGCCATGATCA 57.791 36.364 16.68 0.00 0.00 2.92
20 21 5.122554 TCAAACAATTTTGCATGCCATGATC 59.877 36.000 16.68 0.00 41.78 2.92
21 22 5.004448 TCAAACAATTTTGCATGCCATGAT 58.996 33.333 16.68 1.02 41.78 2.45
22 23 4.386711 TCAAACAATTTTGCATGCCATGA 58.613 34.783 16.68 0.00 41.78 3.07
23 24 4.452795 TCTCAAACAATTTTGCATGCCATG 59.547 37.500 16.68 9.26 41.78 3.66
24 25 4.643463 TCTCAAACAATTTTGCATGCCAT 58.357 34.783 16.68 1.38 41.78 4.40
25 26 4.059511 CTCTCAAACAATTTTGCATGCCA 58.940 39.130 16.68 0.00 41.78 4.92
26 27 4.309099 TCTCTCAAACAATTTTGCATGCC 58.691 39.130 16.68 0.00 41.78 4.40
27 28 5.910637 TTCTCTCAAACAATTTTGCATGC 57.089 34.783 11.82 11.82 41.78 4.06
55 56 6.919721 AGGAATGCGTCTGCTATTTTAAAAA 58.080 32.000 4.44 0.00 43.34 1.94
56 57 6.374333 AGAGGAATGCGTCTGCTATTTTAAAA 59.626 34.615 2.51 2.51 43.34 1.52
57 58 5.880332 AGAGGAATGCGTCTGCTATTTTAAA 59.120 36.000 0.00 0.00 43.34 1.52
58 59 5.428253 AGAGGAATGCGTCTGCTATTTTAA 58.572 37.500 0.00 0.00 43.34 1.52
59 60 5.023533 AGAGGAATGCGTCTGCTATTTTA 57.976 39.130 0.00 0.00 43.34 1.52
60 61 3.878778 AGAGGAATGCGTCTGCTATTTT 58.121 40.909 0.00 0.00 43.34 1.82
61 62 3.550437 AGAGGAATGCGTCTGCTATTT 57.450 42.857 0.00 0.00 43.34 1.40
62 63 4.526262 AGATAGAGGAATGCGTCTGCTATT 59.474 41.667 6.14 0.00 43.34 1.73
63 64 4.085733 AGATAGAGGAATGCGTCTGCTAT 58.914 43.478 6.14 0.00 43.34 2.97
64 65 3.491342 AGATAGAGGAATGCGTCTGCTA 58.509 45.455 6.14 0.00 43.34 3.49
65 66 2.315176 AGATAGAGGAATGCGTCTGCT 58.685 47.619 6.14 0.97 43.34 4.24
66 67 2.810439 AGATAGAGGAATGCGTCTGC 57.190 50.000 6.14 0.00 39.42 4.26
67 68 8.341903 CACTATATAGATAGAGGAATGCGTCTG 58.658 40.741 16.79 0.00 39.42 3.51
68 69 7.012894 GCACTATATAGATAGAGGAATGCGTCT 59.987 40.741 16.79 0.68 41.70 4.18
69 70 7.136119 GCACTATATAGATAGAGGAATGCGTC 58.864 42.308 16.79 0.00 37.81 5.19
70 71 6.603599 TGCACTATATAGATAGAGGAATGCGT 59.396 38.462 16.79 0.00 37.81 5.24
71 72 7.032377 TGCACTATATAGATAGAGGAATGCG 57.968 40.000 16.79 0.00 37.81 4.73
72 73 8.420222 ACATGCACTATATAGATAGAGGAATGC 58.580 37.037 16.79 11.93 37.81 3.56
76 77 8.678199 CGAAACATGCACTATATAGATAGAGGA 58.322 37.037 16.79 5.01 37.81 3.71
77 78 8.678199 TCGAAACATGCACTATATAGATAGAGG 58.322 37.037 16.79 4.31 37.81 3.69
78 79 9.715123 CTCGAAACATGCACTATATAGATAGAG 57.285 37.037 16.79 4.52 37.81 2.43
79 80 9.449719 TCTCGAAACATGCACTATATAGATAGA 57.550 33.333 16.79 0.00 37.81 1.98
80 81 9.715123 CTCTCGAAACATGCACTATATAGATAG 57.285 37.037 16.79 2.77 40.92 2.08
81 82 8.184848 GCTCTCGAAACATGCACTATATAGATA 58.815 37.037 16.79 2.72 0.00 1.98
82 83 7.032580 GCTCTCGAAACATGCACTATATAGAT 58.967 38.462 16.79 0.00 0.00 1.98
83 84 6.016276 TGCTCTCGAAACATGCACTATATAGA 60.016 38.462 16.79 0.00 0.00 1.98
84 85 6.152379 TGCTCTCGAAACATGCACTATATAG 58.848 40.000 8.27 8.27 0.00 1.31
85 86 6.084326 TGCTCTCGAAACATGCACTATATA 57.916 37.500 0.00 0.00 0.00 0.86
86 87 4.948847 TGCTCTCGAAACATGCACTATAT 58.051 39.130 0.00 0.00 0.00 0.86
87 88 4.363138 CTGCTCTCGAAACATGCACTATA 58.637 43.478 0.00 0.00 0.00 1.31
88 89 3.193263 CTGCTCTCGAAACATGCACTAT 58.807 45.455 0.00 0.00 0.00 2.12
89 90 2.610433 CTGCTCTCGAAACATGCACTA 58.390 47.619 0.00 0.00 0.00 2.74
90 91 1.436600 CTGCTCTCGAAACATGCACT 58.563 50.000 0.00 0.00 0.00 4.40
91 92 0.179205 GCTGCTCTCGAAACATGCAC 60.179 55.000 0.00 0.00 0.00 4.57
92 93 0.603439 TGCTGCTCTCGAAACATGCA 60.603 50.000 0.00 0.00 0.00 3.96
93 94 0.518636 TTGCTGCTCTCGAAACATGC 59.481 50.000 0.00 0.00 0.00 4.06
94 95 1.802960 ACTTGCTGCTCTCGAAACATG 59.197 47.619 0.00 0.00 0.00 3.21
95 96 2.175878 ACTTGCTGCTCTCGAAACAT 57.824 45.000 0.00 0.00 0.00 2.71
96 97 2.812358 TACTTGCTGCTCTCGAAACA 57.188 45.000 0.00 0.00 0.00 2.83
97 98 4.024809 AGTTTTACTTGCTGCTCTCGAAAC 60.025 41.667 0.00 7.20 0.00 2.78
98 99 4.024893 CAGTTTTACTTGCTGCTCTCGAAA 60.025 41.667 0.00 0.00 0.00 3.46
99 100 3.494626 CAGTTTTACTTGCTGCTCTCGAA 59.505 43.478 0.00 0.00 0.00 3.71
100 101 3.059884 CAGTTTTACTTGCTGCTCTCGA 58.940 45.455 0.00 0.00 0.00 4.04
101 102 2.802816 ACAGTTTTACTTGCTGCTCTCG 59.197 45.455 0.00 0.00 33.87 4.04
102 103 3.608008 GCACAGTTTTACTTGCTGCTCTC 60.608 47.826 0.00 0.00 32.99 3.20
103 104 2.291741 GCACAGTTTTACTTGCTGCTCT 59.708 45.455 0.00 0.00 32.99 4.09
104 105 2.033299 TGCACAGTTTTACTTGCTGCTC 59.967 45.455 0.00 0.00 35.11 4.26
105 106 2.023673 TGCACAGTTTTACTTGCTGCT 58.976 42.857 0.00 0.00 35.11 4.24
106 107 2.490328 TGCACAGTTTTACTTGCTGC 57.510 45.000 0.00 0.00 35.11 5.25
107 108 4.207635 CACATTGCACAGTTTTACTTGCTG 59.792 41.667 0.00 0.00 35.11 4.41
108 109 4.362279 CACATTGCACAGTTTTACTTGCT 58.638 39.130 0.00 0.00 35.11 3.91
109 110 3.060339 GCACATTGCACAGTTTTACTTGC 60.060 43.478 0.00 0.00 44.26 4.01
110 111 3.180189 CGCACATTGCACAGTTTTACTTG 59.820 43.478 0.00 0.00 45.36 3.16
118 119 0.532640 TGTCTCGCACATTGCACAGT 60.533 50.000 0.00 0.00 45.36 3.55
124 125 5.688823 TCTTTTGTATTGTCTCGCACATTG 58.311 37.500 0.00 0.00 33.90 2.82
265 269 9.464714 CACATGTAAGACGATAATAAGTAAGCT 57.535 33.333 0.00 0.00 0.00 3.74
266 270 9.459640 TCACATGTAAGACGATAATAAGTAAGC 57.540 33.333 0.00 0.00 0.00 3.09
312 316 7.281040 TCAACTCTCAATGAAAGCAATCTTT 57.719 32.000 0.00 0.00 44.67 2.52
313 317 6.889301 TCAACTCTCAATGAAAGCAATCTT 57.111 33.333 0.00 0.00 0.00 2.40
314 318 6.489361 AGTTCAACTCTCAATGAAAGCAATCT 59.511 34.615 0.00 0.00 37.31 2.40
315 319 6.675987 AGTTCAACTCTCAATGAAAGCAATC 58.324 36.000 0.00 0.00 37.31 2.67
393 397 4.468095 AACGAAAAGTTGAAGACATCCG 57.532 40.909 0.00 0.00 42.39 4.18
394 398 5.685954 GGAAAACGAAAAGTTGAAGACATCC 59.314 40.000 0.00 0.00 43.37 3.51
399 403 5.907866 AAGGGAAAACGAAAAGTTGAAGA 57.092 34.783 0.00 0.00 43.37 2.87
411 415 9.000486 AGAAGAATAAGACTTTAAGGGAAAACG 58.000 33.333 0.00 0.00 0.00 3.60
415 419 9.327731 AGAGAGAAGAATAAGACTTTAAGGGAA 57.672 33.333 0.00 0.00 0.00 3.97
425 429 6.092944 TGTCGTCAGAGAGAGAAGAATAAGAC 59.907 42.308 0.00 0.00 0.00 3.01
426 430 6.174049 TGTCGTCAGAGAGAGAAGAATAAGA 58.826 40.000 0.00 0.00 0.00 2.10
427 431 6.429791 TGTCGTCAGAGAGAGAAGAATAAG 57.570 41.667 0.00 0.00 0.00 1.73
428 432 6.349445 GGTTGTCGTCAGAGAGAGAAGAATAA 60.349 42.308 0.00 0.00 0.00 1.40
431 435 3.253677 GGTTGTCGTCAGAGAGAGAAGAA 59.746 47.826 0.00 0.00 0.00 2.52
433 437 2.413502 CGGTTGTCGTCAGAGAGAGAAG 60.414 54.545 0.00 0.00 0.00 2.85
484 504 0.460284 ACACGCCGTGATGGAATCTC 60.460 55.000 25.94 0.00 45.81 2.75
491 511 2.267426 TGATTTCTACACGCCGTGATG 58.733 47.619 25.94 15.30 36.96 3.07
524 546 2.798283 CAGTACGTGCCTTCGAAGAAAA 59.202 45.455 26.61 8.43 45.90 2.29
525 547 2.223876 ACAGTACGTGCCTTCGAAGAAA 60.224 45.455 26.61 11.01 45.90 2.52
528 550 2.248487 GTACAGTACGTGCCTTCGAAG 58.752 52.381 18.51 18.51 34.70 3.79
548 573 0.246360 TGAGCACAGTGATACCCGTG 59.754 55.000 4.15 0.00 0.00 4.94
551 576 0.460284 CCGTGAGCACAGTGATACCC 60.460 60.000 4.15 0.00 0.00 3.69
575 600 2.001872 CGACAGCAGTGCATGTTGATA 58.998 47.619 19.20 0.00 42.36 2.15
576 601 0.800631 CGACAGCAGTGCATGTTGAT 59.199 50.000 19.20 0.00 42.36 2.57
577 602 1.844771 GCGACAGCAGTGCATGTTGA 61.845 55.000 26.21 0.00 42.36 3.18
578 603 1.441515 GCGACAGCAGTGCATGTTG 60.442 57.895 19.20 20.59 45.03 3.33
579 604 2.949106 GCGACAGCAGTGCATGTT 59.051 55.556 19.20 0.00 44.35 2.71
589 614 2.534903 GCCTATTTCCGGCGACAGC 61.535 63.158 9.30 0.00 44.18 4.40
590 615 3.719214 GCCTATTTCCGGCGACAG 58.281 61.111 9.30 0.00 37.87 3.51
596 621 3.311486 TTTTTGCTTGCCTATTTCCGG 57.689 42.857 0.00 0.00 0.00 5.14
597 622 6.959671 TTTATTTTTGCTTGCCTATTTCCG 57.040 33.333 0.00 0.00 0.00 4.30
602 627 9.559732 GGGATTTATTTATTTTTGCTTGCCTAT 57.440 29.630 0.00 0.00 0.00 2.57
603 628 8.543774 TGGGATTTATTTATTTTTGCTTGCCTA 58.456 29.630 0.00 0.00 0.00 3.93
604 629 7.401246 TGGGATTTATTTATTTTTGCTTGCCT 58.599 30.769 0.00 0.00 0.00 4.75
605 630 7.622893 TGGGATTTATTTATTTTTGCTTGCC 57.377 32.000 0.00 0.00 0.00 4.52
606 631 8.891720 TCATGGGATTTATTTATTTTTGCTTGC 58.108 29.630 0.00 0.00 0.00 4.01
617 642 8.637986 GGCATGTTACTTCATGGGATTTATTTA 58.362 33.333 8.41 0.00 43.54 1.40
618 643 7.125507 TGGCATGTTACTTCATGGGATTTATTT 59.874 33.333 8.41 0.00 43.54 1.40
619 644 6.610830 TGGCATGTTACTTCATGGGATTTATT 59.389 34.615 8.41 0.00 43.54 1.40
620 645 6.040842 GTGGCATGTTACTTCATGGGATTTAT 59.959 38.462 8.41 0.00 43.54 1.40
621 646 5.359576 GTGGCATGTTACTTCATGGGATTTA 59.640 40.000 8.41 0.00 43.54 1.40
622 647 4.160252 GTGGCATGTTACTTCATGGGATTT 59.840 41.667 8.41 0.00 43.54 2.17
623 648 3.701040 GTGGCATGTTACTTCATGGGATT 59.299 43.478 8.41 0.00 43.54 3.01
624 649 3.053395 AGTGGCATGTTACTTCATGGGAT 60.053 43.478 8.41 0.00 43.54 3.85
625 650 2.308570 AGTGGCATGTTACTTCATGGGA 59.691 45.455 8.41 0.00 43.54 4.37
626 651 2.684881 GAGTGGCATGTTACTTCATGGG 59.315 50.000 8.41 0.00 43.54 4.00
627 652 3.614092 AGAGTGGCATGTTACTTCATGG 58.386 45.455 8.41 0.00 43.54 3.66
628 653 4.272018 GCTAGAGTGGCATGTTACTTCATG 59.728 45.833 0.00 2.78 45.37 3.07
629 654 4.163078 AGCTAGAGTGGCATGTTACTTCAT 59.837 41.667 0.00 0.12 0.00 2.57
630 655 3.515502 AGCTAGAGTGGCATGTTACTTCA 59.484 43.478 0.00 0.00 0.00 3.02
631 656 4.130286 AGCTAGAGTGGCATGTTACTTC 57.870 45.455 0.00 1.19 0.00 3.01
632 657 4.442192 GCTAGCTAGAGTGGCATGTTACTT 60.442 45.833 25.15 0.73 0.00 2.24
633 658 3.068873 GCTAGCTAGAGTGGCATGTTACT 59.931 47.826 25.15 4.03 0.00 2.24
634 659 3.068873 AGCTAGCTAGAGTGGCATGTTAC 59.931 47.826 25.15 1.59 0.00 2.50
635 660 3.300388 AGCTAGCTAGAGTGGCATGTTA 58.700 45.455 25.15 0.00 0.00 2.41
636 661 2.102252 GAGCTAGCTAGAGTGGCATGTT 59.898 50.000 25.15 0.00 0.00 2.71
637 662 1.686052 GAGCTAGCTAGAGTGGCATGT 59.314 52.381 25.15 0.00 0.00 3.21
638 663 1.685517 TGAGCTAGCTAGAGTGGCATG 59.314 52.381 25.15 0.00 0.00 4.06
639 664 2.079170 TGAGCTAGCTAGAGTGGCAT 57.921 50.000 25.15 0.28 0.00 4.40
640 665 1.685517 CATGAGCTAGCTAGAGTGGCA 59.314 52.381 25.15 9.97 0.00 4.92
641 666 1.686052 ACATGAGCTAGCTAGAGTGGC 59.314 52.381 25.15 9.41 0.00 5.01
642 667 4.141287 ACTACATGAGCTAGCTAGAGTGG 58.859 47.826 25.15 18.76 0.00 4.00
643 668 4.819088 TGACTACATGAGCTAGCTAGAGTG 59.181 45.833 25.15 15.62 0.00 3.51
644 669 5.042463 TGACTACATGAGCTAGCTAGAGT 57.958 43.478 25.15 17.60 0.00 3.24
658 683 3.701205 TCACCTGCAACATGACTACAT 57.299 42.857 0.00 0.00 37.19 2.29
659 684 3.701205 ATCACCTGCAACATGACTACA 57.299 42.857 0.00 0.00 0.00 2.74
660 685 5.376854 AAAATCACCTGCAACATGACTAC 57.623 39.130 0.00 0.00 0.00 2.73
661 686 5.301551 ACAAAAATCACCTGCAACATGACTA 59.698 36.000 0.00 0.00 0.00 2.59
662 687 4.099881 ACAAAAATCACCTGCAACATGACT 59.900 37.500 0.00 0.00 0.00 3.41
663 688 4.370917 ACAAAAATCACCTGCAACATGAC 58.629 39.130 0.00 0.00 0.00 3.06
664 689 4.669206 ACAAAAATCACCTGCAACATGA 57.331 36.364 0.00 0.00 0.00 3.07
679 704 3.242478 CGTCTGGCAGTACGAAACAAAAA 60.242 43.478 25.09 0.00 41.55 1.94
694 719 4.074526 TGAGGCTGAGCGTCTGGC 62.075 66.667 25.03 2.86 42.87 4.85
695 720 2.183811 CTGAGGCTGAGCGTCTGG 59.816 66.667 25.03 15.12 42.87 3.86
697 722 2.504163 CTTGCTGAGGCTGAGCGTCT 62.504 60.000 25.03 5.80 42.87 4.18
698 723 2.047844 TTGCTGAGGCTGAGCGTC 60.048 61.111 20.86 19.28 42.76 5.19
699 724 2.047465 CTTGCTGAGGCTGAGCGT 60.047 61.111 20.86 0.00 39.47 5.07
700 725 3.497932 GCTTGCTGAGGCTGAGCG 61.498 66.667 20.86 8.89 39.47 5.03
702 727 3.497932 GCGCTTGCTGAGGCTGAG 61.498 66.667 0.00 0.00 39.59 3.35
795 879 2.892425 GCGACGAAGATGGGCTGG 60.892 66.667 0.00 0.00 0.00 4.85
796 880 2.892425 GGCGACGAAGATGGGCTG 60.892 66.667 0.00 0.00 0.00 4.85
797 881 3.390521 TGGCGACGAAGATGGGCT 61.391 61.111 0.00 0.00 0.00 5.19
799 883 2.511600 GGTGGCGACGAAGATGGG 60.512 66.667 0.00 0.00 0.00 4.00
849 934 1.016130 GTGCGTGTCATCCACTCCAG 61.016 60.000 0.00 0.00 42.20 3.86
976 1061 1.441016 CGCTTTGCTTGACTTCGGC 60.441 57.895 0.00 0.00 0.00 5.54
1203 1288 1.139947 GAAGAACTCCTCCTCGCCG 59.860 63.158 0.00 0.00 0.00 6.46
1363 1454 3.437795 GGCGAAGACGACGAGGGA 61.438 66.667 0.00 0.00 42.66 4.20
1565 1662 3.054503 ACGGCGTAGTCAGCGAGT 61.055 61.111 12.58 0.00 35.00 4.18
1669 1766 9.656323 ACACCCAAGATAACTGAAGATACTATA 57.344 33.333 0.00 0.00 0.00 1.31
1670 1767 8.554490 ACACCCAAGATAACTGAAGATACTAT 57.446 34.615 0.00 0.00 0.00 2.12
1693 1798 5.921962 ATCAGTACAGTGCAGAATAGACA 57.078 39.130 0.00 0.00 0.00 3.41
1704 1810 5.277974 CCCAGTGAACAAAATCAGTACAGTG 60.278 44.000 0.00 0.00 31.80 3.66
1809 1915 3.189287 CAGGTACAATGTCCTCAAACTGC 59.811 47.826 0.00 0.00 30.91 4.40
1880 1986 7.651808 ACAATAAAATCGAGCCAAGATTATGG 58.348 34.615 0.00 0.00 43.70 2.74
1887 1993 6.182039 TCAGAACAATAAAATCGAGCCAAG 57.818 37.500 0.00 0.00 0.00 3.61
1921 2028 8.940952 CCTGTTTCCAAAACAATGAAAAACTAA 58.059 29.630 6.70 0.00 32.09 2.24
1952 2060 9.826574 AACACATAAGAAAAACTAGTGTCACTA 57.173 29.630 12.16 12.16 37.85 2.74
1970 2078 8.789762 GCTTAAACTTTCCCTCTAAACACATAA 58.210 33.333 0.00 0.00 0.00 1.90
1972 2080 7.004691 AGCTTAAACTTTCCCTCTAAACACAT 58.995 34.615 0.00 0.00 0.00 3.21
2080 2188 0.954452 CTCACTGGCAAAGGTGGAAC 59.046 55.000 5.64 0.00 34.57 3.62
2104 2212 5.707298 TGAAAAAGATGGAGTGAATGGAGAC 59.293 40.000 0.00 0.00 0.00 3.36
2203 2312 4.983538 CAGATAACTGTATGCTGAGCTCAG 59.016 45.833 34.82 34.82 41.45 3.35
2279 2388 6.433093 TCAAGAACTAACTTCCTTAATTGGGC 59.567 38.462 0.00 0.00 0.00 5.36
2313 2422 8.133627 AGAAATGATCGAAAAGATTTATGGCAG 58.866 33.333 0.00 0.00 40.26 4.85
2320 2429 7.535258 CACGTTCAGAAATGATCGAAAAGATTT 59.465 33.333 13.78 0.00 40.26 2.17
2332 2441 6.394809 TGAATACTAGCACGTTCAGAAATGA 58.605 36.000 0.00 0.00 0.00 2.57
2341 2450 5.386958 TTCTCACTGAATACTAGCACGTT 57.613 39.130 0.00 0.00 0.00 3.99
2367 2476 6.249951 TGTTATACCTTTGGGTTATGCAAGT 58.750 36.000 0.00 0.00 44.73 3.16
2385 2494 9.905713 AATCCTCAACATAAGCTCTTTGTTATA 57.094 29.630 8.13 1.58 32.57 0.98
2387 2496 7.362056 GCAATCCTCAACATAAGCTCTTTGTTA 60.362 37.037 8.13 0.00 32.57 2.41
2435 2545 5.698545 AGATCTTGAAAGTAAGTGAGCACAC 59.301 40.000 6.11 6.11 46.24 3.82
2436 2546 5.858381 AGATCTTGAAAGTAAGTGAGCACA 58.142 37.500 3.19 0.00 0.00 4.57
2437 2547 7.761704 TGATAGATCTTGAAAGTAAGTGAGCAC 59.238 37.037 0.00 0.00 0.00 4.40
2438 2548 7.840931 TGATAGATCTTGAAAGTAAGTGAGCA 58.159 34.615 0.00 0.00 0.00 4.26
2439 2549 8.763356 CATGATAGATCTTGAAAGTAAGTGAGC 58.237 37.037 0.00 0.00 34.84 4.26
2455 2565 2.300152 TGGCGAGGGAACATGATAGATC 59.700 50.000 0.00 0.00 0.00 2.75
2485 2654 3.097614 AGAAACTACGCCCTGATAGTGT 58.902 45.455 0.00 0.00 31.93 3.55
2486 2655 3.802948 AGAAACTACGCCCTGATAGTG 57.197 47.619 0.00 0.00 31.93 2.74
2487 2656 4.954826 ACTAAGAAACTACGCCCTGATAGT 59.045 41.667 0.00 0.00 32.93 2.12
2510 2679 4.634012 ACCAAAGTAAGTAGTGATGCCA 57.366 40.909 0.00 0.00 0.00 4.92
2529 2698 5.946377 ACCTGGATGAGAAACAAGATAAACC 59.054 40.000 0.00 0.00 0.00 3.27
2531 2700 8.328758 ACATACCTGGATGAGAAACAAGATAAA 58.671 33.333 0.00 0.00 0.00 1.40
2545 2714 9.559732 TTGTCAATATTTCTACATACCTGGATG 57.440 33.333 0.00 2.60 0.00 3.51
2894 3064 3.609853 ACACAGTCATCGGCATACAATT 58.390 40.909 0.00 0.00 0.00 2.32
3042 3212 8.412608 ACATGATAACTTGAATTACTGAGTCG 57.587 34.615 0.00 0.00 0.00 4.18
3075 3245 1.068741 GTCAGCCCTACAGGTATTCCG 59.931 57.143 0.00 0.00 38.26 4.30
3364 3564 1.213182 TCCCTCACTATGCTCGTCTCT 59.787 52.381 0.00 0.00 0.00 3.10
3471 3672 4.794439 TCATGCACGGGCTCGACG 62.794 66.667 15.95 3.92 41.91 5.12
4106 4355 1.636003 GAATTGGAAGGTGAGGGAGGT 59.364 52.381 0.00 0.00 0.00 3.85
5035 5284 9.890629 TTAAGCAATCACAGTCATATAAAGACT 57.109 29.630 5.61 5.61 46.72 3.24
5199 5452 6.233430 AGCATAAAGAGCGTAATTAGCATG 57.767 37.500 8.84 0.00 37.01 4.06
5262 5524 4.854291 CAGTCAGTCAATCAGTCTTACGAC 59.146 45.833 0.00 0.00 40.54 4.34
5263 5525 4.082733 CCAGTCAGTCAATCAGTCTTACGA 60.083 45.833 0.00 0.00 0.00 3.43
5264 5526 4.082733 TCCAGTCAGTCAATCAGTCTTACG 60.083 45.833 0.00 0.00 0.00 3.18
5265 5527 5.392767 TCCAGTCAGTCAATCAGTCTTAC 57.607 43.478 0.00 0.00 0.00 2.34
5266 5528 6.042093 AGTTTCCAGTCAGTCAATCAGTCTTA 59.958 38.462 0.00 0.00 0.00 2.10
5429 5691 0.108520 AACGGCGGTCAACGTGATAT 60.109 50.000 13.24 0.00 46.52 1.63
5528 5790 3.008049 AGAAAAGCACTGTACCTAGTGGG 59.992 47.826 13.52 0.00 46.32 4.61
5570 5832 1.040339 GCTTGAAACCCACACCACCA 61.040 55.000 0.00 0.00 0.00 4.17
5604 5866 4.836825 ACACTTACATCAGGGATGAACTG 58.163 43.478 12.79 5.24 42.09 3.16
5613 5875 4.037923 AGCAAAACCAACACTTACATCAGG 59.962 41.667 0.00 0.00 0.00 3.86
5800 6062 3.019564 GTGGTTTCATTATGAGGCAGCT 58.980 45.455 0.00 0.00 0.00 4.24
5813 6075 0.550914 AAGGGAGCAGTGTGGTTTCA 59.449 50.000 0.00 0.00 0.00 2.69
5833 6095 3.365969 GCAACTTCGGGACAAATGGTAAG 60.366 47.826 0.00 0.00 0.00 2.34
5834 6096 2.554893 GCAACTTCGGGACAAATGGTAA 59.445 45.455 0.00 0.00 0.00 2.85
5835 6097 2.156098 GCAACTTCGGGACAAATGGTA 58.844 47.619 0.00 0.00 0.00 3.25
5848 6110 4.464112 GAGTAAACCACATTCGCAACTTC 58.536 43.478 0.00 0.00 0.00 3.01
5852 6114 3.134574 AGGAGTAAACCACATTCGCAA 57.865 42.857 0.00 0.00 0.00 4.85
5856 6118 4.302559 AGGGAAGGAGTAAACCACATTC 57.697 45.455 0.00 0.00 0.00 2.67
5889 6152 4.532126 ACCATCTCATGTCAGTTGGAACTA 59.468 41.667 15.16 0.00 37.08 2.24
5971 6234 2.088178 CGGTGTACGGTGTTACGGC 61.088 63.158 0.00 0.00 39.42 5.68
5988 6251 1.321743 CGAAGAGTCAAGGCGAAATCG 59.678 52.381 0.00 0.00 43.27 3.34
6065 6330 3.944015 ACAACATCATAGGCTGCTCTTTC 59.056 43.478 0.00 0.00 0.00 2.62
6077 6342 3.025262 ACATGCCATGCACAACATCATA 58.975 40.909 4.17 0.00 43.04 2.15
6096 6361 4.380233 GCTAGCGTTAGTTCCTGACTTACA 60.380 45.833 8.17 0.00 37.68 2.41
6098 6363 3.760151 TGCTAGCGTTAGTTCCTGACTTA 59.240 43.478 10.77 0.00 39.86 2.24
6102 6367 2.443416 TCTGCTAGCGTTAGTTCCTGA 58.557 47.619 10.77 0.00 0.00 3.86
6161 6431 6.767524 ACACACACAAGAGGACATTAAAAA 57.232 33.333 0.00 0.00 0.00 1.94
6163 6433 9.378551 GATATACACACACAAGAGGACATTAAA 57.621 33.333 0.00 0.00 0.00 1.52
6165 6435 7.497595 GGATATACACACACAAGAGGACATTA 58.502 38.462 0.00 0.00 0.00 1.90
6168 6438 4.142249 CGGATATACACACACAAGAGGACA 60.142 45.833 0.00 0.00 0.00 4.02
6181 6451 2.545952 CCACAGCTGACCGGATATACAC 60.546 54.545 23.35 0.00 0.00 2.90
6183 6453 1.961394 TCCACAGCTGACCGGATATAC 59.039 52.381 23.35 0.00 0.00 1.47
6188 6458 1.118965 TTTCTCCACAGCTGACCGGA 61.119 55.000 23.35 20.42 0.00 5.14
6190 6460 0.671781 CCTTTCTCCACAGCTGACCG 60.672 60.000 23.35 8.16 0.00 4.79
6192 6462 2.550830 TTCCTTTCTCCACAGCTGAC 57.449 50.000 23.35 0.00 0.00 3.51
6209 6479 2.685100 ACAGTTCCGAAGTTCCGATTC 58.315 47.619 0.00 0.00 0.00 2.52
6212 6482 2.206750 CAAACAGTTCCGAAGTTCCGA 58.793 47.619 0.00 0.00 0.00 4.55
6213 6483 1.263217 CCAAACAGTTCCGAAGTTCCG 59.737 52.381 0.00 0.00 0.00 4.30
6214 6484 1.607148 CCCAAACAGTTCCGAAGTTCC 59.393 52.381 0.00 0.00 0.00 3.62
6215 6485 2.567985 TCCCAAACAGTTCCGAAGTTC 58.432 47.619 0.00 0.00 0.00 3.01
6216 6486 2.721425 TCCCAAACAGTTCCGAAGTT 57.279 45.000 0.00 0.00 0.00 2.66
6217 6487 2.721425 TTCCCAAACAGTTCCGAAGT 57.279 45.000 0.00 0.00 0.00 3.01
6218 6488 3.305335 CCAATTCCCAAACAGTTCCGAAG 60.305 47.826 0.00 0.00 0.00 3.79
6219 6489 2.625790 CCAATTCCCAAACAGTTCCGAA 59.374 45.455 0.00 0.00 0.00 4.30
6220 6490 2.235016 CCAATTCCCAAACAGTTCCGA 58.765 47.619 0.00 0.00 0.00 4.55
6221 6491 1.272212 CCCAATTCCCAAACAGTTCCG 59.728 52.381 0.00 0.00 0.00 4.30
6222 6492 1.623311 CCCCAATTCCCAAACAGTTCC 59.377 52.381 0.00 0.00 0.00 3.62
6223 6493 2.325484 ACCCCAATTCCCAAACAGTTC 58.675 47.619 0.00 0.00 0.00 3.01
6224 6494 2.437651 CAACCCCAATTCCCAAACAGTT 59.562 45.455 0.00 0.00 0.00 3.16
6225 6495 2.046292 CAACCCCAATTCCCAAACAGT 58.954 47.619 0.00 0.00 0.00 3.55
6226 6496 2.046292 ACAACCCCAATTCCCAAACAG 58.954 47.619 0.00 0.00 0.00 3.16
6227 6497 1.765314 CACAACCCCAATTCCCAAACA 59.235 47.619 0.00 0.00 0.00 2.83
6228 6498 1.071542 CCACAACCCCAATTCCCAAAC 59.928 52.381 0.00 0.00 0.00 2.93
6229 6499 1.062121 TCCACAACCCCAATTCCCAAA 60.062 47.619 0.00 0.00 0.00 3.28
6230 6500 0.563173 TCCACAACCCCAATTCCCAA 59.437 50.000 0.00 0.00 0.00 4.12
6231 6501 0.789687 ATCCACAACCCCAATTCCCA 59.210 50.000 0.00 0.00 0.00 4.37
6232 6502 1.951209 AATCCACAACCCCAATTCCC 58.049 50.000 0.00 0.00 0.00 3.97
6233 6503 3.954258 CTCTAATCCACAACCCCAATTCC 59.046 47.826 0.00 0.00 0.00 3.01
6234 6504 4.640647 GTCTCTAATCCACAACCCCAATTC 59.359 45.833 0.00 0.00 0.00 2.17
6235 6505 4.044065 TGTCTCTAATCCACAACCCCAATT 59.956 41.667 0.00 0.00 0.00 2.32
6236 6506 3.591527 TGTCTCTAATCCACAACCCCAAT 59.408 43.478 0.00 0.00 0.00 3.16
6237 6507 2.983192 TGTCTCTAATCCACAACCCCAA 59.017 45.455 0.00 0.00 0.00 4.12
6238 6508 2.626785 TGTCTCTAATCCACAACCCCA 58.373 47.619 0.00 0.00 0.00 4.96
6239 6509 3.713826 TTGTCTCTAATCCACAACCCC 57.286 47.619 0.00 0.00 0.00 4.95
6240 6510 6.483640 GTGATATTGTCTCTAATCCACAACCC 59.516 42.308 0.00 0.00 32.96 4.11
6241 6511 6.483640 GGTGATATTGTCTCTAATCCACAACC 59.516 42.308 0.00 0.00 32.96 3.77
6242 6512 7.225538 CAGGTGATATTGTCTCTAATCCACAAC 59.774 40.741 0.00 0.00 32.96 3.32
6243 6513 7.275183 CAGGTGATATTGTCTCTAATCCACAA 58.725 38.462 0.00 0.00 34.61 3.33
6244 6514 6.183361 CCAGGTGATATTGTCTCTAATCCACA 60.183 42.308 0.00 0.00 31.23 4.17
6245 6515 6.042093 TCCAGGTGATATTGTCTCTAATCCAC 59.958 42.308 0.00 0.00 0.00 4.02
6246 6516 6.143206 TCCAGGTGATATTGTCTCTAATCCA 58.857 40.000 0.00 0.00 0.00 3.41
6247 6517 6.672266 TCCAGGTGATATTGTCTCTAATCC 57.328 41.667 0.00 0.00 0.00 3.01
6248 6518 7.442666 GGTTTCCAGGTGATATTGTCTCTAATC 59.557 40.741 0.00 0.00 0.00 1.75
6249 6519 7.092444 TGGTTTCCAGGTGATATTGTCTCTAAT 60.092 37.037 0.00 0.00 0.00 1.73
6250 6520 6.214615 TGGTTTCCAGGTGATATTGTCTCTAA 59.785 38.462 0.00 0.00 0.00 2.10
6375 6645 1.095807 GTATTCTCTGGTTGCGGGCC 61.096 60.000 0.00 0.00 0.00 5.80
6390 6662 6.498538 TGAGGGGTTCCATGTAAAATGTATT 58.501 36.000 0.00 0.00 34.83 1.89
6391 6663 6.086011 TGAGGGGTTCCATGTAAAATGTAT 57.914 37.500 0.00 0.00 34.83 2.29
6476 6750 3.406764 GTGGTGAATCATAGGCAGATCC 58.593 50.000 0.00 0.00 0.00 3.36
6480 6771 0.940126 GCGTGGTGAATCATAGGCAG 59.060 55.000 9.23 0.00 0.00 4.85
6512 6806 7.456684 TTTCCATTTTAAATCGTTGTGTGTG 57.543 32.000 0.00 0.00 0.00 3.82
6518 6823 8.638565 CAGCTACTTTTCCATTTTAAATCGTTG 58.361 33.333 0.00 0.00 0.00 4.10
6519 6824 7.328493 GCAGCTACTTTTCCATTTTAAATCGTT 59.672 33.333 0.00 0.00 0.00 3.85
6520 6825 6.806739 GCAGCTACTTTTCCATTTTAAATCGT 59.193 34.615 0.00 0.00 0.00 3.73
6637 6964 6.619801 TTAGCTTCCTTCAGTTTTCTGTTC 57.380 37.500 0.00 0.00 46.98 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.