Multiple sequence alignment - TraesCS3B01G337300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G337300 chr3B 100.000 7220 0 0 1 7220 543694134 543686915 0.000000e+00 13333
1 TraesCS3B01G337300 chr3B 93.182 88 6 0 2073 2160 672866956 672866869 5.880000e-26 130
2 TraesCS3B01G337300 chr3D 96.054 3675 106 18 2156 5807 417216674 417213016 0.000000e+00 5947
3 TraesCS3B01G337300 chr3D 86.337 2064 129 66 98 2078 417218662 417216669 0.000000e+00 2108
4 TraesCS3B01G337300 chr3D 93.367 799 30 12 6051 6842 417212564 417211782 0.000000e+00 1160
5 TraesCS3B01G337300 chr3D 93.676 253 10 3 5806 6053 417212859 417212608 2.460000e-99 374
6 TraesCS3B01G337300 chr3D 83.972 287 37 6 6840 7123 417211741 417211461 4.290000e-67 267
7 TraesCS3B01G337300 chr3A 95.624 2971 84 9 3121 6053 533623334 533626296 0.000000e+00 4724
8 TraesCS3B01G337300 chr3A 90.886 1174 76 19 6051 7220 533626340 533627486 0.000000e+00 1546
9 TraesCS3B01G337300 chr3A 91.835 992 48 14 2156 3122 533622269 533623252 0.000000e+00 1352
10 TraesCS3B01G337300 chr3A 85.370 1162 91 38 78 1202 533620279 533621398 0.000000e+00 1131
11 TraesCS3B01G337300 chr3A 83.750 320 38 6 1288 1593 533621432 533621751 2.550000e-74 291
12 TraesCS3B01G337300 chrUn 85.370 1162 91 38 78 1202 263816281 263817400 0.000000e+00 1131
13 TraesCS3B01G337300 chrUn 83.750 320 38 6 1288 1593 263817434 263817753 2.550000e-74 291
14 TraesCS3B01G337300 chr7A 96.552 87 3 0 2071 2157 649398031 649397945 2.100000e-30 145
15 TraesCS3B01G337300 chr7A 95.455 88 4 0 2073 2160 645281493 645281406 2.720000e-29 141
16 TraesCS3B01G337300 chr7A 93.333 90 5 1 2068 2157 731501988 731501900 1.630000e-26 132
17 TraesCS3B01G337300 chr7D 94.186 86 5 0 2072 2157 602187325 602187240 1.630000e-26 132
18 TraesCS3B01G337300 chr2D 94.186 86 5 0 2072 2157 119819536 119819451 1.630000e-26 132
19 TraesCS3B01G337300 chr1B 94.118 85 5 0 2073 2157 543504309 543504393 5.880000e-26 130
20 TraesCS3B01G337300 chr1A 93.182 88 6 0 2073 2160 580514829 580514742 5.880000e-26 130
21 TraesCS3B01G337300 chr1A 93.182 88 6 0 2073 2160 580542830 580542743 5.880000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G337300 chr3B 543686915 543694134 7219 True 13333.0 13333 100.0000 1 7220 1 chr3B.!!$R1 7219
1 TraesCS3B01G337300 chr3D 417211461 417218662 7201 True 1971.2 5947 90.6812 98 7123 5 chr3D.!!$R1 7025
2 TraesCS3B01G337300 chr3A 533620279 533627486 7207 False 1808.8 4724 89.4930 78 7220 5 chr3A.!!$F1 7142
3 TraesCS3B01G337300 chrUn 263816281 263817753 1472 False 711.0 1131 84.5600 78 1593 2 chrUn.!!$F1 1515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.109342 CACACCCAAAGCCACTCTCT 59.891 55.000 0.00 0.00 0.00 3.10 F
1254 1331 0.035458 CGAAGCAGTCTTTCTGGGGT 59.965 55.000 0.00 0.00 43.78 4.95 F
1565 1688 0.264062 TGGGATTGCATATTGCCCCA 59.736 50.000 9.95 9.95 45.79 4.96 F
1670 1832 2.027625 GGTTCAACAGAGGTCCGCG 61.028 63.158 0.00 0.00 0.00 6.46 F
2320 2495 2.281761 CAGCACAACCTCGGGCTT 60.282 61.111 0.00 0.00 33.60 4.35 F
2967 3158 3.786818 GCTCGTAATGCTGCATTGAGAAC 60.787 47.826 30.99 23.03 35.54 3.01 F
3953 4232 1.135859 GTTGACATTCGGCTTGCTGAG 60.136 52.381 4.25 0.00 0.00 3.35 F
4522 4801 0.109412 GAGCATGCAAGTTGGCTGAC 60.109 55.000 21.98 0.00 36.59 3.51 F
5758 6069 2.352127 GCTCTTTCCTGATGTGTTTGCC 60.352 50.000 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1363 0.391130 CGACTCGCCAATCCTTTCCA 60.391 55.000 0.00 0.0 0.00 3.53 R
2135 2304 2.027385 ACTCCCTCCGTACCGAAATAC 58.973 52.381 0.00 0.0 0.00 1.89 R
3561 3840 0.397941 AGCCTGTGAGCAAAGCAGTA 59.602 50.000 0.00 0.0 34.23 2.74 R
3611 3890 1.649321 ATCAACAGCTCACTCTCCCA 58.351 50.000 0.00 0.0 0.00 4.37 R
3898 4177 0.319405 AGCAAATGCCAACTCTTGCC 59.681 50.000 0.94 0.0 44.14 4.52 R
4230 4509 0.393537 AGCTCCATTCTTTGGGCTCG 60.394 55.000 2.89 0.0 44.12 5.03 R
5896 6366 0.179034 GCTGGCAGGATAGACTTGGG 60.179 60.000 17.64 0.0 0.00 4.12 R
6109 6634 0.322816 TGCTCATCCCTGCCTTCAAC 60.323 55.000 0.00 0.0 0.00 3.18 R
6666 7192 1.004918 AACCGGGTGCTCGAAGAAG 60.005 57.895 6.32 0.0 34.09 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.659048 GAGACTATAACCGATTTTGCCAG 57.341 43.478 0.00 0.00 0.00 4.85
23 24 4.451900 AGACTATAACCGATTTTGCCAGG 58.548 43.478 0.00 0.00 0.00 4.45
24 25 3.551846 ACTATAACCGATTTTGCCAGGG 58.448 45.455 0.00 0.00 0.00 4.45
25 26 2.818751 ATAACCGATTTTGCCAGGGA 57.181 45.000 0.00 0.00 0.00 4.20
26 27 2.588464 TAACCGATTTTGCCAGGGAA 57.412 45.000 0.00 0.00 0.00 3.97
27 28 0.966179 AACCGATTTTGCCAGGGAAC 59.034 50.000 0.00 0.00 0.00 3.62
42 43 2.595124 GGAACCAAACACACCCAAAG 57.405 50.000 0.00 0.00 0.00 2.77
43 44 1.472552 GGAACCAAACACACCCAAAGC 60.473 52.381 0.00 0.00 0.00 3.51
44 45 0.539518 AACCAAACACACCCAAAGCC 59.460 50.000 0.00 0.00 0.00 4.35
45 46 0.616111 ACCAAACACACCCAAAGCCA 60.616 50.000 0.00 0.00 0.00 4.75
46 47 0.179086 CCAAACACACCCAAAGCCAC 60.179 55.000 0.00 0.00 0.00 5.01
47 48 0.823460 CAAACACACCCAAAGCCACT 59.177 50.000 0.00 0.00 0.00 4.00
48 49 1.111277 AAACACACCCAAAGCCACTC 58.889 50.000 0.00 0.00 0.00 3.51
49 50 0.258774 AACACACCCAAAGCCACTCT 59.741 50.000 0.00 0.00 0.00 3.24
50 51 0.179018 ACACACCCAAAGCCACTCTC 60.179 55.000 0.00 0.00 0.00 3.20
51 52 0.109342 CACACCCAAAGCCACTCTCT 59.891 55.000 0.00 0.00 0.00 3.10
52 53 0.398318 ACACCCAAAGCCACTCTCTC 59.602 55.000 0.00 0.00 0.00 3.20
53 54 0.689623 CACCCAAAGCCACTCTCTCT 59.310 55.000 0.00 0.00 0.00 3.10
54 55 0.980423 ACCCAAAGCCACTCTCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
55 56 0.979665 CCCAAAGCCACTCTCTCTCA 59.020 55.000 0.00 0.00 0.00 3.27
56 57 1.338579 CCCAAAGCCACTCTCTCTCAC 60.339 57.143 0.00 0.00 0.00 3.51
57 58 1.345741 CCAAAGCCACTCTCTCTCACA 59.654 52.381 0.00 0.00 0.00 3.58
58 59 2.411904 CAAAGCCACTCTCTCTCACAC 58.588 52.381 0.00 0.00 0.00 3.82
59 60 1.709578 AAGCCACTCTCTCTCACACA 58.290 50.000 0.00 0.00 0.00 3.72
60 61 0.965439 AGCCACTCTCTCTCACACAC 59.035 55.000 0.00 0.00 0.00 3.82
61 62 0.676184 GCCACTCTCTCTCACACACA 59.324 55.000 0.00 0.00 0.00 3.72
62 63 1.604185 GCCACTCTCTCTCACACACAC 60.604 57.143 0.00 0.00 0.00 3.82
63 64 1.683385 CCACTCTCTCTCACACACACA 59.317 52.381 0.00 0.00 0.00 3.72
64 65 2.298446 CCACTCTCTCTCACACACACAT 59.702 50.000 0.00 0.00 0.00 3.21
65 66 3.573598 CACTCTCTCTCACACACACATC 58.426 50.000 0.00 0.00 0.00 3.06
66 67 3.255395 CACTCTCTCTCACACACACATCT 59.745 47.826 0.00 0.00 0.00 2.90
67 68 3.894427 ACTCTCTCTCACACACACATCTT 59.106 43.478 0.00 0.00 0.00 2.40
68 69 4.022416 ACTCTCTCTCACACACACATCTTC 60.022 45.833 0.00 0.00 0.00 2.87
69 70 3.891366 TCTCTCTCACACACACATCTTCA 59.109 43.478 0.00 0.00 0.00 3.02
70 71 4.342092 TCTCTCTCACACACACATCTTCAA 59.658 41.667 0.00 0.00 0.00 2.69
71 72 5.011431 TCTCTCTCACACACACATCTTCAAT 59.989 40.000 0.00 0.00 0.00 2.57
72 73 5.614308 TCTCTCACACACACATCTTCAATT 58.386 37.500 0.00 0.00 0.00 2.32
73 74 5.698089 TCTCTCACACACACATCTTCAATTC 59.302 40.000 0.00 0.00 0.00 2.17
74 75 5.367302 TCTCACACACACATCTTCAATTCA 58.633 37.500 0.00 0.00 0.00 2.57
75 76 5.999600 TCTCACACACACATCTTCAATTCAT 59.000 36.000 0.00 0.00 0.00 2.57
76 77 6.148315 TCTCACACACACATCTTCAATTCATC 59.852 38.462 0.00 0.00 0.00 2.92
79 80 6.361481 CACACACACATCTTCAATTCATCAAC 59.639 38.462 0.00 0.00 0.00 3.18
86 87 7.061905 CACATCTTCAATTCATCAACAAAGCTC 59.938 37.037 0.00 0.00 0.00 4.09
88 89 6.675026 TCTTCAATTCATCAACAAAGCTCTG 58.325 36.000 0.00 0.00 0.00 3.35
89 90 6.487668 TCTTCAATTCATCAACAAAGCTCTGA 59.512 34.615 0.00 0.00 0.00 3.27
91 92 6.617879 TCAATTCATCAACAAAGCTCTGATG 58.382 36.000 16.29 16.29 45.12 3.07
95 96 7.509141 TTCATCAACAAAGCTCTGATGTTAA 57.491 32.000 19.37 10.49 44.43 2.01
135 136 6.622833 ATTGAACTTTGCCCAAAAATGAAG 57.377 33.333 0.00 0.00 0.00 3.02
142 143 3.791245 TGCCCAAAAATGAAGTCAACAC 58.209 40.909 0.00 0.00 0.00 3.32
147 148 5.291614 CCCAAAAATGAAGTCAACACTGTTG 59.708 40.000 14.79 14.79 31.06 3.33
156 157 3.696051 AGTCAACACTGTTGCACTGAAAT 59.304 39.130 15.94 0.00 0.00 2.17
158 159 5.356751 AGTCAACACTGTTGCACTGAAATTA 59.643 36.000 15.94 0.00 0.00 1.40
159 160 6.039717 AGTCAACACTGTTGCACTGAAATTAT 59.960 34.615 15.94 0.00 0.00 1.28
163 164 6.804677 ACACTGTTGCACTGAAATTATTTCA 58.195 32.000 17.92 17.92 46.68 2.69
200 210 7.781324 AGAATATCCACACCAAGTCAAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
201 211 7.605449 AGAATATCCACACCAAGTCAAAAATG 58.395 34.615 0.00 0.00 0.00 2.32
202 212 4.605640 ATCCACACCAAGTCAAAAATGG 57.394 40.909 0.00 0.00 40.16 3.16
203 213 2.102252 TCCACACCAAGTCAAAAATGGC 59.898 45.455 0.00 0.00 37.77 4.40
204 214 2.158986 CCACACCAAGTCAAAAATGGCA 60.159 45.455 0.00 0.00 37.77 4.92
205 215 3.494749 CCACACCAAGTCAAAAATGGCAT 60.495 43.478 0.00 0.00 37.77 4.40
206 216 4.262377 CCACACCAAGTCAAAAATGGCATA 60.262 41.667 0.00 0.00 37.77 3.14
207 217 5.295950 CACACCAAGTCAAAAATGGCATAA 58.704 37.500 0.00 0.00 37.77 1.90
208 218 5.177327 CACACCAAGTCAAAAATGGCATAAC 59.823 40.000 0.00 0.00 37.77 1.89
209 219 5.163364 ACACCAAGTCAAAAATGGCATAACA 60.163 36.000 0.00 0.00 37.77 2.41
227 237 2.546899 ACAAGGGTATGTGTGGCTAGA 58.453 47.619 0.00 0.00 30.82 2.43
228 238 2.236395 ACAAGGGTATGTGTGGCTAGAC 59.764 50.000 0.00 0.00 30.82 2.59
237 247 6.428771 GGTATGTGTGGCTAGACACTTTAAAA 59.571 38.462 28.56 4.61 45.52 1.52
240 250 8.630054 ATGTGTGGCTAGACACTTTAAAATTA 57.370 30.769 28.56 2.72 45.52 1.40
305 316 5.959652 AAAAGTTATTGTGCGTTGAAACC 57.040 34.783 0.00 0.00 0.00 3.27
308 319 5.352643 AGTTATTGTGCGTTGAAACCTAC 57.647 39.130 0.00 0.00 0.00 3.18
309 320 5.061179 AGTTATTGTGCGTTGAAACCTACT 58.939 37.500 0.00 0.00 0.00 2.57
310 321 6.225318 AGTTATTGTGCGTTGAAACCTACTA 58.775 36.000 0.00 0.00 0.00 1.82
311 322 6.367969 AGTTATTGTGCGTTGAAACCTACTAG 59.632 38.462 0.00 0.00 0.00 2.57
312 323 3.738830 TGTGCGTTGAAACCTACTAGT 57.261 42.857 0.00 0.00 0.00 2.57
313 324 3.386486 TGTGCGTTGAAACCTACTAGTG 58.614 45.455 5.39 0.00 0.00 2.74
356 368 8.110860 TGAAATTTCCAGTCTACCAAGAATTC 57.889 34.615 15.48 0.00 32.16 2.17
390 402 7.054124 AGTTCTGAATCACAAAGGAAAGTGTA 58.946 34.615 0.00 0.00 37.07 2.90
392 404 8.999431 GTTCTGAATCACAAAGGAAAGTGTATA 58.001 33.333 0.00 0.00 37.07 1.47
393 405 9.739276 TTCTGAATCACAAAGGAAAGTGTATAT 57.261 29.630 0.00 0.00 37.07 0.86
394 406 9.383519 TCTGAATCACAAAGGAAAGTGTATATC 57.616 33.333 0.00 0.00 37.07 1.63
395 407 8.506168 TGAATCACAAAGGAAAGTGTATATCC 57.494 34.615 0.00 0.00 37.07 2.59
396 408 8.106462 TGAATCACAAAGGAAAGTGTATATCCA 58.894 33.333 0.00 0.00 37.07 3.41
397 409 9.125026 GAATCACAAAGGAAAGTGTATATCCAT 57.875 33.333 0.00 0.00 37.07 3.41
398 410 9.479549 AATCACAAAGGAAAGTGTATATCCATT 57.520 29.630 0.00 0.00 37.07 3.16
499 537 1.406539 GCATCACAACACATCATCCCC 59.593 52.381 0.00 0.00 0.00 4.81
502 540 1.423161 TCACAACACATCATCCCCACA 59.577 47.619 0.00 0.00 0.00 4.17
547 585 6.294675 GGCAACATAGCTGGCAAAATATGATA 60.295 38.462 15.97 0.00 39.10 2.15
646 684 8.302438 CAAAGAAATAAGGAAAGAATCTGCTGT 58.698 33.333 0.00 0.00 0.00 4.40
675 714 0.179018 AATCCCCATCCAGCTAACGC 60.179 55.000 0.00 0.00 0.00 4.84
677 716 1.524621 CCCCATCCAGCTAACGCAG 60.525 63.158 0.00 0.00 39.10 5.18
683 722 3.127533 CAGCTAACGCAGGGCCAC 61.128 66.667 6.18 0.00 39.10 5.01
715 763 4.741239 ACCGGGTCCATCCAGCCT 62.741 66.667 6.32 0.00 38.11 4.58
742 795 2.365768 GTCTCCCCTCCCCTGTCC 60.366 72.222 0.00 0.00 0.00 4.02
775 828 0.541998 CAAACCAAACCCTCCCTCCC 60.542 60.000 0.00 0.00 0.00 4.30
776 829 0.704813 AAACCAAACCCTCCCTCCCT 60.705 55.000 0.00 0.00 0.00 4.20
777 830 1.140772 AACCAAACCCTCCCTCCCTC 61.141 60.000 0.00 0.00 0.00 4.30
778 831 2.309504 CCAAACCCTCCCTCCCTCC 61.310 68.421 0.00 0.00 0.00 4.30
845 902 3.432051 GAGCATCCCACGAGACCGG 62.432 68.421 0.00 0.00 40.78 5.28
883 940 2.559231 AGGAAAAGGAGACAGAGACGAC 59.441 50.000 0.00 0.00 0.00 4.34
886 943 1.893544 AAGGAGACAGAGACGACGAA 58.106 50.000 0.00 0.00 0.00 3.85
900 957 1.099689 GACGAAGAGGGAGACAGAGG 58.900 60.000 0.00 0.00 0.00 3.69
931 1004 4.643387 ACTTGCCCGGAAAGCGCT 62.643 61.111 2.64 2.64 0.00 5.92
996 1069 1.144057 AAGATCTAGGGTTGCGGCG 59.856 57.895 0.51 0.51 0.00 6.46
1167 1240 2.279408 GTACCTCGCTCCCTCCCT 59.721 66.667 0.00 0.00 0.00 4.20
1168 1241 1.829096 GTACCTCGCTCCCTCCCTC 60.829 68.421 0.00 0.00 0.00 4.30
1169 1242 3.070987 TACCTCGCTCCCTCCCTCC 62.071 68.421 0.00 0.00 0.00 4.30
1174 1247 3.773154 GCTCCCTCCCTCCCCTCT 61.773 72.222 0.00 0.00 0.00 3.69
1178 1251 1.705450 CCCTCCCTCCCCTCTCCTA 60.705 68.421 0.00 0.00 0.00 2.94
1183 1260 2.198980 CTCCCCTCTCCTACCCCG 59.801 72.222 0.00 0.00 0.00 5.73
1209 1286 3.361977 GCGTTTGATGTGCCGGGT 61.362 61.111 2.18 0.00 0.00 5.28
1213 1290 0.958822 GTTTGATGTGCCGGGTTCTT 59.041 50.000 2.18 0.00 0.00 2.52
1214 1291 1.339929 GTTTGATGTGCCGGGTTCTTT 59.660 47.619 2.18 0.00 0.00 2.52
1237 1314 2.745884 CCGTTCTTGGCATGCCGA 60.746 61.111 30.87 28.19 39.42 5.54
1254 1331 0.035458 CGAAGCAGTCTTTCTGGGGT 59.965 55.000 0.00 0.00 43.78 4.95
1265 1342 3.073946 TCTTTCTGGGGTTTCTTTCGGAT 59.926 43.478 0.00 0.00 0.00 4.18
1266 1343 4.287585 TCTTTCTGGGGTTTCTTTCGGATA 59.712 41.667 0.00 0.00 0.00 2.59
1267 1344 3.906720 TCTGGGGTTTCTTTCGGATAG 57.093 47.619 0.00 0.00 0.00 2.08
1268 1345 2.504175 TCTGGGGTTTCTTTCGGATAGG 59.496 50.000 0.00 0.00 0.00 2.57
1269 1346 2.504175 CTGGGGTTTCTTTCGGATAGGA 59.496 50.000 0.00 0.00 0.00 2.94
1270 1347 2.504175 TGGGGTTTCTTTCGGATAGGAG 59.496 50.000 0.00 0.00 0.00 3.69
1271 1348 2.158798 GGGGTTTCTTTCGGATAGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
1272 1349 2.770232 GGGTTTCTTTCGGATAGGAGGA 59.230 50.000 0.00 0.00 0.00 3.71
1273 1350 3.199289 GGGTTTCTTTCGGATAGGAGGAA 59.801 47.826 0.00 0.00 0.00 3.36
1274 1351 4.443621 GGTTTCTTTCGGATAGGAGGAAG 58.556 47.826 0.00 0.00 0.00 3.46
1275 1352 4.443621 GTTTCTTTCGGATAGGAGGAAGG 58.556 47.826 0.00 0.00 0.00 3.46
1276 1353 3.682592 TCTTTCGGATAGGAGGAAGGA 57.317 47.619 0.00 0.00 0.00 3.36
1277 1354 3.990369 TCTTTCGGATAGGAGGAAGGAA 58.010 45.455 0.00 0.00 0.00 3.36
1278 1355 3.961408 TCTTTCGGATAGGAGGAAGGAAG 59.039 47.826 0.00 0.00 0.00 3.46
1279 1356 3.682592 TTCGGATAGGAGGAAGGAAGA 57.317 47.619 0.00 0.00 0.00 2.87
1280 1357 3.231207 TCGGATAGGAGGAAGGAAGAG 57.769 52.381 0.00 0.00 0.00 2.85
1281 1358 2.514582 TCGGATAGGAGGAAGGAAGAGT 59.485 50.000 0.00 0.00 0.00 3.24
1282 1359 3.052793 TCGGATAGGAGGAAGGAAGAGTT 60.053 47.826 0.00 0.00 0.00 3.01
1283 1360 4.167502 TCGGATAGGAGGAAGGAAGAGTTA 59.832 45.833 0.00 0.00 0.00 2.24
1284 1361 4.521256 CGGATAGGAGGAAGGAAGAGTTAG 59.479 50.000 0.00 0.00 0.00 2.34
1285 1362 5.690632 CGGATAGGAGGAAGGAAGAGTTAGA 60.691 48.000 0.00 0.00 0.00 2.10
1286 1363 6.319715 GGATAGGAGGAAGGAAGAGTTAGAT 58.680 44.000 0.00 0.00 0.00 1.98
1287 1364 6.210584 GGATAGGAGGAAGGAAGAGTTAGATG 59.789 46.154 0.00 0.00 0.00 2.90
1288 1365 4.294347 AGGAGGAAGGAAGAGTTAGATGG 58.706 47.826 0.00 0.00 0.00 3.51
1289 1366 4.016105 AGGAGGAAGGAAGAGTTAGATGGA 60.016 45.833 0.00 0.00 0.00 3.41
1290 1367 4.717280 GGAGGAAGGAAGAGTTAGATGGAA 59.283 45.833 0.00 0.00 0.00 3.53
1322 1430 2.542907 CGCTGCGTGGTTTCTTGGT 61.543 57.895 14.93 0.00 0.00 3.67
1323 1431 1.733526 GCTGCGTGGTTTCTTGGTT 59.266 52.632 0.00 0.00 0.00 3.67
1327 1435 0.933047 GCGTGGTTTCTTGGTTTCGC 60.933 55.000 0.00 0.00 36.06 4.70
1328 1436 0.661020 CGTGGTTTCTTGGTTTCGCT 59.339 50.000 0.00 0.00 0.00 4.93
1329 1437 1.064952 CGTGGTTTCTTGGTTTCGCTT 59.935 47.619 0.00 0.00 0.00 4.68
1406 1516 1.153823 GCTCGCAGCCTCGTTTCTA 60.154 57.895 0.00 0.00 34.48 2.10
1419 1529 3.735591 TCGTTTCTAGGTTCCTTTGGTG 58.264 45.455 0.00 0.00 0.00 4.17
1436 1555 3.353836 GCCGTGGTGCGTGAATGT 61.354 61.111 0.00 0.00 39.32 2.71
1510 1631 1.429463 GGAGTTGACTGTTGTAGGCG 58.571 55.000 0.00 0.00 37.17 5.52
1555 1676 2.382882 TGTTGTTGACTTGGGATTGCA 58.617 42.857 0.00 0.00 0.00 4.08
1558 1679 4.771577 TGTTGTTGACTTGGGATTGCATAT 59.228 37.500 0.00 0.00 0.00 1.78
1559 1680 5.245751 TGTTGTTGACTTGGGATTGCATATT 59.754 36.000 0.00 0.00 0.00 1.28
1560 1681 5.327616 TGTTGACTTGGGATTGCATATTG 57.672 39.130 0.00 0.00 0.00 1.90
1561 1682 4.114794 GTTGACTTGGGATTGCATATTGC 58.885 43.478 0.00 0.00 45.29 3.56
1562 1683 2.694628 TGACTTGGGATTGCATATTGCC 59.305 45.455 0.00 0.00 44.23 4.52
1565 1688 0.264062 TGGGATTGCATATTGCCCCA 59.736 50.000 9.95 9.95 45.79 4.96
1569 1692 3.181441 GGGATTGCATATTGCCCCATTTT 60.181 43.478 7.24 0.00 44.23 1.82
1618 1771 5.687285 GCTGCAACTATTGGCATTGTAATAC 59.313 40.000 0.00 0.00 39.65 1.89
1622 1775 7.554476 TGCAACTATTGGCATTGTAATACAGTA 59.446 33.333 0.00 0.00 34.58 2.74
1623 1776 8.567948 GCAACTATTGGCATTGTAATACAGTAT 58.432 33.333 0.00 0.00 0.00 2.12
1670 1832 2.027625 GGTTCAACAGAGGTCCGCG 61.028 63.158 0.00 0.00 0.00 6.46
1728 1892 2.874701 CTGGAGGGAATTACGCTGATTG 59.125 50.000 0.00 0.00 41.84 2.67
1750 1914 4.401837 TGCAATAGAACTGGCATTTGCATA 59.598 37.500 4.74 0.00 43.02 3.14
1758 1922 6.815142 AGAACTGGCATTTGCATAAAATCTTC 59.185 34.615 4.74 0.00 44.36 2.87
1780 1944 7.446931 TCTTCTGTATTTTATTGGTGTCAGCAA 59.553 33.333 19.08 19.08 40.12 3.91
1836 2000 6.803807 GCAAACATTTTCTTAGCCTTACTCTG 59.196 38.462 0.00 0.00 0.00 3.35
1840 2004 9.959721 AACATTTTCTTAGCCTTACTCTGATAA 57.040 29.630 0.00 0.00 0.00 1.75
1883 2048 7.864108 TGGATTAGTCAAAGGATGTACATTG 57.136 36.000 10.30 5.19 0.00 2.82
1907 2072 3.910627 ACTTAGGTCCACCTTTGTCTCAT 59.089 43.478 2.90 0.00 46.09 2.90
1945 2110 5.176407 TCAACATTGTACCAAAGTTTCCG 57.824 39.130 0.00 0.00 0.00 4.30
2057 2226 7.881232 TGTTGTAGGAAGTAGGAACCATTAAAG 59.119 37.037 0.00 0.00 0.00 1.85
2058 2227 6.412214 TGTAGGAAGTAGGAACCATTAAAGC 58.588 40.000 0.00 0.00 0.00 3.51
2097 2266 7.179076 ACTACCTCTGTACCGAAATATTTGT 57.821 36.000 5.17 0.89 0.00 2.83
2098 2267 8.297470 ACTACCTCTGTACCGAAATATTTGTA 57.703 34.615 5.17 0.00 0.00 2.41
2099 2268 8.411683 ACTACCTCTGTACCGAAATATTTGTAG 58.588 37.037 5.17 8.94 0.00 2.74
2100 2269 7.179076 ACCTCTGTACCGAAATATTTGTAGT 57.821 36.000 5.17 2.81 0.00 2.73
2101 2270 7.618137 ACCTCTGTACCGAAATATTTGTAGTT 58.382 34.615 5.17 0.00 0.00 2.24
2102 2271 7.548075 ACCTCTGTACCGAAATATTTGTAGTTG 59.452 37.037 5.17 0.00 0.00 3.16
2103 2272 7.011109 CCTCTGTACCGAAATATTTGTAGTTGG 59.989 40.741 5.17 0.00 0.00 3.77
2104 2273 6.819649 TCTGTACCGAAATATTTGTAGTTGGG 59.180 38.462 5.17 0.00 0.00 4.12
2105 2274 5.881443 TGTACCGAAATATTTGTAGTTGGGG 59.119 40.000 5.17 0.00 29.20 4.96
2106 2275 4.274978 ACCGAAATATTTGTAGTTGGGGG 58.725 43.478 5.17 0.00 29.20 5.40
2107 2276 4.018233 ACCGAAATATTTGTAGTTGGGGGA 60.018 41.667 5.17 0.00 29.20 4.81
2108 2277 4.951094 CCGAAATATTTGTAGTTGGGGGAA 59.049 41.667 5.17 0.00 0.00 3.97
2109 2278 5.163591 CCGAAATATTTGTAGTTGGGGGAAC 60.164 44.000 5.17 0.00 34.40 3.62
2111 2280 6.152154 CGAAATATTTGTAGTTGGGGGAACTT 59.848 38.462 5.17 0.00 42.70 2.66
2112 2281 6.850752 AATATTTGTAGTTGGGGGAACTTG 57.149 37.500 0.00 0.00 42.70 3.16
2113 2282 3.673543 TTTGTAGTTGGGGGAACTTGT 57.326 42.857 0.00 0.00 42.70 3.16
2114 2283 4.792513 TTTGTAGTTGGGGGAACTTGTA 57.207 40.909 0.00 0.00 42.70 2.41
2115 2284 3.775261 TGTAGTTGGGGGAACTTGTAC 57.225 47.619 0.00 0.00 42.70 2.90
2116 2285 3.320129 TGTAGTTGGGGGAACTTGTACT 58.680 45.455 0.00 0.00 42.70 2.73
2117 2286 4.491675 TGTAGTTGGGGGAACTTGTACTA 58.508 43.478 0.00 0.00 42.70 1.82
2118 2287 4.529377 TGTAGTTGGGGGAACTTGTACTAG 59.471 45.833 2.56 2.56 42.70 2.57
2119 2288 3.595021 AGTTGGGGGAACTTGTACTAGT 58.405 45.455 3.98 3.98 42.70 2.57
2120 2289 3.978672 AGTTGGGGGAACTTGTACTAGTT 59.021 43.478 20.40 20.40 42.70 2.24
2121 2290 4.414514 AGTTGGGGGAACTTGTACTAGTTT 59.585 41.667 21.05 7.74 42.70 2.66
2122 2291 4.628963 TGGGGGAACTTGTACTAGTTTC 57.371 45.455 21.05 19.16 38.43 2.78
2125 2294 3.947868 GGGAACTTGTACTAGTTTCCCC 58.052 50.000 27.93 24.96 44.78 4.81
2126 2295 3.307975 GGGAACTTGTACTAGTTTCCCCC 60.308 52.174 27.93 24.42 44.78 5.40
2127 2296 3.328637 GGAACTTGTACTAGTTTCCCCCA 59.671 47.826 21.05 0.00 38.43 4.96
2128 2297 4.202493 GGAACTTGTACTAGTTTCCCCCAA 60.202 45.833 21.05 1.50 38.43 4.12
2129 2298 4.362470 ACTTGTACTAGTTTCCCCCAAC 57.638 45.455 0.00 0.00 0.00 3.77
2130 2299 3.978672 ACTTGTACTAGTTTCCCCCAACT 59.021 43.478 0.00 0.00 40.28 3.16
2131 2300 5.157395 ACTTGTACTAGTTTCCCCCAACTA 58.843 41.667 0.00 0.00 38.07 2.24
2132 2301 5.012458 ACTTGTACTAGTTTCCCCCAACTAC 59.988 44.000 0.00 0.00 38.07 2.73
2133 2302 4.755437 TGTACTAGTTTCCCCCAACTACT 58.245 43.478 0.00 0.00 38.07 2.57
2134 2303 5.902760 TGTACTAGTTTCCCCCAACTACTA 58.097 41.667 0.00 0.00 38.07 1.82
2135 2304 5.954150 TGTACTAGTTTCCCCCAACTACTAG 59.046 44.000 0.00 0.00 42.39 2.57
2136 2305 5.020941 ACTAGTTTCCCCCAACTACTAGT 57.979 43.478 0.00 0.00 43.91 2.57
2137 2306 6.157862 ACTAGTTTCCCCCAACTACTAGTA 57.842 41.667 10.53 1.89 45.72 1.82
2138 2307 6.750009 ACTAGTTTCCCCCAACTACTAGTAT 58.250 40.000 2.33 0.00 45.72 2.12
2139 2308 7.194761 ACTAGTTTCCCCCAACTACTAGTATT 58.805 38.462 2.33 0.00 45.72 1.89
2140 2309 6.964876 AGTTTCCCCCAACTACTAGTATTT 57.035 37.500 2.33 0.96 35.10 1.40
2141 2310 6.955364 AGTTTCCCCCAACTACTAGTATTTC 58.045 40.000 2.33 0.00 35.10 2.17
2142 2311 5.603170 TTCCCCCAACTACTAGTATTTCG 57.397 43.478 2.33 0.00 0.00 3.46
2143 2312 3.962718 TCCCCCAACTACTAGTATTTCGG 59.037 47.826 2.33 6.37 0.00 4.30
2144 2313 3.708121 CCCCCAACTACTAGTATTTCGGT 59.292 47.826 13.21 1.88 0.00 4.69
2145 2314 4.895297 CCCCCAACTACTAGTATTTCGGTA 59.105 45.833 13.21 0.00 0.00 4.02
2146 2315 5.221322 CCCCCAACTACTAGTATTTCGGTAC 60.221 48.000 13.21 0.00 0.00 3.34
2168 2340 3.197116 CGGAGGGAGTAATACACAAACCT 59.803 47.826 0.00 0.00 31.75 3.50
2252 2425 3.767711 ACTGTCACATACCTCTGACTCA 58.232 45.455 0.00 0.00 38.12 3.41
2320 2495 2.281761 CAGCACAACCTCGGGCTT 60.282 61.111 0.00 0.00 33.60 4.35
2515 2690 7.925483 TGTGTTGCTAATGTAAGATTGCTTTTT 59.075 29.630 0.00 0.00 35.56 1.94
2638 2827 8.424274 AAAAATGAAGAATGTGAAACCTTGAC 57.576 30.769 0.00 0.00 34.36 3.18
2704 2895 7.158021 ACTATTCTTATGCCAGCATTAGACTC 58.842 38.462 18.14 0.00 40.39 3.36
2967 3158 3.786818 GCTCGTAATGCTGCATTGAGAAC 60.787 47.826 30.99 23.03 35.54 3.01
3013 3204 5.594725 TGAAGATCAGCTTAGAAGATACCGT 59.405 40.000 0.00 0.00 36.83 4.83
3199 3478 6.262720 GGCATCTTTCTTCTTTGCTATCTGAT 59.737 38.462 0.00 0.00 33.86 2.90
3201 3480 7.644551 GCATCTTTCTTCTTTGCTATCTGATTG 59.355 37.037 0.00 0.00 0.00 2.67
3245 3524 6.731467 TGAGGCCAAAGAAAAGGATATTAGT 58.269 36.000 5.01 0.00 0.00 2.24
3290 3569 9.529325 AATGATATGAAGAAAATGTTGCATGAG 57.471 29.630 0.00 0.00 0.00 2.90
3558 3837 9.777297 ATTGCTAAAATGGCGGAATTTTATATT 57.223 25.926 9.62 0.00 39.84 1.28
3561 3840 9.908152 GCTAAAATGGCGGAATTTTATATTACT 57.092 29.630 9.62 0.00 39.84 2.24
3611 3890 5.047519 CAGAAGGAATCCTTGCTTGACAAAT 60.048 40.000 20.73 0.00 44.82 2.32
3737 4016 4.342378 TCTTCTAAATCATCCTGACTCCCG 59.658 45.833 0.00 0.00 0.00 5.14
3898 4177 3.959535 AAGAGAAAGAGCTCTCAGTGG 57.040 47.619 18.55 0.00 44.18 4.00
3953 4232 1.135859 GTTGACATTCGGCTTGCTGAG 60.136 52.381 4.25 0.00 0.00 3.35
4076 4355 6.601613 TGCAAAAAGAAAGAGAGGAAGTACAA 59.398 34.615 0.00 0.00 0.00 2.41
4080 4359 8.809468 AAAAGAAAGAGAGGAAGTACAAAAGT 57.191 30.769 0.00 0.00 0.00 2.66
4243 4522 3.690460 ACAATCTTCGAGCCCAAAGAAT 58.310 40.909 0.00 0.00 35.29 2.40
4337 4616 6.169094 TGATGAAAAGAAAGAGGAGCTACAG 58.831 40.000 0.00 0.00 0.00 2.74
4349 4628 0.979665 AGCTACAGAAGGAAGCTGCA 59.020 50.000 1.02 0.00 44.67 4.41
4505 4784 4.439968 TCATGAGTAAGATGCAGCAAGAG 58.560 43.478 4.07 0.00 0.00 2.85
4522 4801 0.109412 GAGCATGCAAGTTGGCTGAC 60.109 55.000 21.98 0.00 36.59 3.51
4847 5126 6.650120 AGCCCTTAATAATCAACGAGAGAAA 58.350 36.000 0.00 0.00 0.00 2.52
5123 5429 4.700213 CCAGTATCTTGGGTTCGAAAATGT 59.300 41.667 0.00 0.00 34.46 2.71
5197 5503 3.864003 GGTAGACTTCTTCATAACGGTGC 59.136 47.826 0.00 0.00 0.00 5.01
5277 5583 3.274288 GACCAAGCTGGAGAAATACCTG 58.726 50.000 8.91 0.00 40.96 4.00
5346 5652 5.363101 TGTCATATGATCCAAGTGAAGCTC 58.637 41.667 9.02 0.00 0.00 4.09
5468 5779 8.621532 TTATCTTTATGCTAATTCCTGCGAAT 57.378 30.769 0.00 0.00 40.58 3.34
5469 5780 6.304356 TCTTTATGCTAATTCCTGCGAATG 57.696 37.500 0.00 0.00 38.75 2.67
5471 5782 6.542005 TCTTTATGCTAATTCCTGCGAATGAA 59.458 34.615 0.00 0.00 38.75 2.57
5472 5783 6.691754 TTATGCTAATTCCTGCGAATGAAA 57.308 33.333 0.00 0.00 38.75 2.69
5477 5788 6.310956 TGCTAATTCCTGCGAATGAAATTTTG 59.689 34.615 0.00 0.00 38.75 2.44
5492 5803 9.762933 AATGAAATTTTGTACTGCATTAACACT 57.237 25.926 0.00 0.00 26.74 3.55
5553 5864 4.020928 TGCTCCAAAAATGAACATGATGCT 60.021 37.500 0.00 0.00 0.00 3.79
5758 6069 2.352127 GCTCTTTCCTGATGTGTTTGCC 60.352 50.000 0.00 0.00 0.00 4.52
5835 6304 9.770097 TTATTCTAGCTCTTATGTCTTGAATGG 57.230 33.333 0.00 0.00 35.27 3.16
5896 6366 4.796312 GCTGAACGAGATAACTCTGAACTC 59.204 45.833 0.00 0.00 40.65 3.01
6046 6524 7.148340 GCTAATTGTTCAGCTTATCAACTGTCT 60.148 37.037 0.00 0.00 35.37 3.41
6049 6527 2.977914 TCAGCTTATCAACTGTCTGGC 58.022 47.619 0.00 0.00 35.37 4.85
6084 6609 4.592942 TGATGCTTTATCCTTTGCAGTCT 58.407 39.130 0.00 0.00 38.87 3.24
6207 6732 1.920272 GCGAAGAAGTTGTGGCGTTTC 60.920 52.381 0.00 0.00 0.00 2.78
6242 6767 0.468648 GCAGCTTCCCCGGTAGTATT 59.531 55.000 0.00 0.00 0.00 1.89
6255 6780 6.236409 CCCGGTAGTATTAGACATACAGAGA 58.764 44.000 0.00 0.00 0.00 3.10
6309 6834 4.641396 TGAAGTTGCTTTGCTCTTAGCTA 58.359 39.130 0.03 0.00 42.97 3.32
6329 6854 4.320494 GCTACATTTGTGTCTCCACCTTTG 60.320 45.833 0.00 0.00 41.09 2.77
6386 6911 0.465460 TGTGAGCAGCGGAGGTTTTT 60.465 50.000 0.00 0.00 33.74 1.94
6418 6943 0.031585 ATGAATCACGCCATGCATGC 59.968 50.000 21.69 11.82 0.00 4.06
6474 6999 5.389516 CGTGTAAAGTGGTTGATAGCTTGTC 60.390 44.000 0.00 0.00 0.00 3.18
6483 7008 4.449743 GGTTGATAGCTTGTCGTTTGTGTA 59.550 41.667 0.00 0.00 0.00 2.90
6510 7035 1.633945 GATTGGGGGTGTAGGAACAGT 59.366 52.381 0.00 0.00 35.91 3.55
6532 7057 7.234371 ACAGTCCATATGATGAGTATTAGTGCT 59.766 37.037 3.65 0.00 0.00 4.40
6533 7058 7.544915 CAGTCCATATGATGAGTATTAGTGCTG 59.455 40.741 3.65 0.00 0.00 4.41
6534 7059 6.312426 GTCCATATGATGAGTATTAGTGCTGC 59.688 42.308 3.65 0.00 0.00 5.25
6552 7077 1.303091 GCCGTTATGGGTGGTGTGAC 61.303 60.000 0.00 0.00 38.63 3.67
6556 7081 2.028839 CGTTATGGGTGGTGTGACAGTA 60.029 50.000 0.00 0.00 0.00 2.74
6576 7101 1.070134 AGCCTGTTCAGTGCTCGTTTA 59.930 47.619 8.99 0.00 0.00 2.01
6664 7190 1.400846 CTGATTGATGCTGCTGTGGTC 59.599 52.381 0.00 0.00 0.00 4.02
6665 7191 1.003928 TGATTGATGCTGCTGTGGTCT 59.996 47.619 0.00 0.00 0.00 3.85
6666 7192 1.669779 GATTGATGCTGCTGTGGTCTC 59.330 52.381 0.00 0.00 0.00 3.36
6787 7318 1.507141 GACAAACAGGGCCACGTCAG 61.507 60.000 6.18 1.35 0.00 3.51
6788 7319 2.113139 AAACAGGGCCACGTCAGG 59.887 61.111 6.18 0.00 0.00 3.86
6789 7320 2.752807 AAACAGGGCCACGTCAGGT 61.753 57.895 6.18 0.00 0.00 4.00
6790 7321 2.676163 AAACAGGGCCACGTCAGGTC 62.676 60.000 6.18 0.00 0.00 3.85
6791 7322 3.625897 CAGGGCCACGTCAGGTCA 61.626 66.667 6.18 0.00 34.02 4.02
6792 7323 3.314331 AGGGCCACGTCAGGTCAG 61.314 66.667 6.18 0.00 34.02 3.51
6793 7324 4.394712 GGGCCACGTCAGGTCAGG 62.395 72.222 4.39 0.00 34.02 3.86
6794 7325 3.626924 GGCCACGTCAGGTCAGGT 61.627 66.667 0.00 0.00 32.13 4.00
6795 7326 2.048127 GCCACGTCAGGTCAGGTC 60.048 66.667 0.00 0.00 0.00 3.85
6796 7327 2.867855 GCCACGTCAGGTCAGGTCA 61.868 63.158 0.00 0.00 0.00 4.02
6812 7343 3.131933 CAGGTCAGGTCAGATGTTAGAGG 59.868 52.174 0.00 0.00 0.00 3.69
6909 7484 8.069574 TGATATGCAGAAATTTACAATACGCAG 58.930 33.333 0.00 0.00 0.00 5.18
6914 7489 6.966632 GCAGAAATTTACAATACGCAGATCAA 59.033 34.615 0.00 0.00 0.00 2.57
6924 7499 5.705609 ATACGCAGATCAACAAAGGTTTT 57.294 34.783 0.00 0.00 34.21 2.43
6927 7502 3.456280 GCAGATCAACAAAGGTTTTGCA 58.544 40.909 0.00 0.00 34.21 4.08
6941 7517 9.601971 CAAAGGTTTTGCAATTTGATATCTTTG 57.398 29.630 15.10 13.83 35.19 2.77
6943 7519 8.907222 AGGTTTTGCAATTTGATATCTTTGTT 57.093 26.923 0.00 0.00 0.00 2.83
6972 7548 8.787852 AGCATTTTTCTTCTACTTTCTTCGATT 58.212 29.630 0.00 0.00 0.00 3.34
6994 7570 5.469373 TCATATTACTTGTCGCTGCTTTG 57.531 39.130 0.00 0.00 0.00 2.77
7033 7610 6.642540 GCATTTTGAGCTAAAAAGCAGTTAGT 59.357 34.615 14.34 0.00 46.63 2.24
7037 7614 8.996024 TTTGAGCTAAAAAGCAGTTAGTTTTT 57.004 26.923 0.00 0.00 41.60 1.94
7075 7654 2.622064 AGATGTAGGGCCGACAATTC 57.378 50.000 23.42 16.67 0.00 2.17
7127 7707 7.267857 AGATGATAACGAGACACATGAATCAA 58.732 34.615 0.00 0.00 0.00 2.57
7133 7713 3.539604 GAGACACATGAATCAAGAGGGG 58.460 50.000 0.00 0.00 0.00 4.79
7134 7714 2.019984 GACACATGAATCAAGAGGGGC 58.980 52.381 0.00 0.00 0.00 5.80
7135 7715 1.341383 ACACATGAATCAAGAGGGGCC 60.341 52.381 0.00 0.00 0.00 5.80
7159 7739 1.019278 GGTGGCACTACACATGACCG 61.019 60.000 18.45 0.00 43.08 4.79
7182 7762 4.543084 GCGCGCATCTCCTTTGCC 62.543 66.667 29.10 0.00 36.75 4.52
7184 7764 2.796651 GCGCATCTCCTTTGCCTG 59.203 61.111 0.30 0.00 36.75 4.85
7189 7769 0.323178 CATCTCCTTTGCCTGCCTGT 60.323 55.000 0.00 0.00 0.00 4.00
7198 7778 4.488879 CTTTGCCTGCCTGTTTAAATCTC 58.511 43.478 0.00 0.00 0.00 2.75
7204 7784 3.944015 CTGCCTGTTTAAATCTCTCCTGG 59.056 47.826 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.511826 CCTGGCAAAATCGGTTATAGTCTC 59.488 45.833 0.00 0.00 0.00 3.36
1 2 4.451900 CCTGGCAAAATCGGTTATAGTCT 58.548 43.478 0.00 0.00 0.00 3.24
2 3 3.564225 CCCTGGCAAAATCGGTTATAGTC 59.436 47.826 0.00 0.00 0.00 2.59
3 4 3.201266 TCCCTGGCAAAATCGGTTATAGT 59.799 43.478 0.00 0.00 0.00 2.12
4 5 3.815809 TCCCTGGCAAAATCGGTTATAG 58.184 45.455 0.00 0.00 0.00 1.31
5 6 3.935818 TCCCTGGCAAAATCGGTTATA 57.064 42.857 0.00 0.00 0.00 0.98
6 7 2.758423 GTTCCCTGGCAAAATCGGTTAT 59.242 45.455 0.00 0.00 0.00 1.89
7 8 2.164338 GTTCCCTGGCAAAATCGGTTA 58.836 47.619 0.00 0.00 0.00 2.85
8 9 0.966179 GTTCCCTGGCAAAATCGGTT 59.034 50.000 0.00 0.00 0.00 4.44
9 10 0.898326 GGTTCCCTGGCAAAATCGGT 60.898 55.000 0.00 0.00 0.00 4.69
10 11 0.897863 TGGTTCCCTGGCAAAATCGG 60.898 55.000 0.00 0.00 0.00 4.18
11 12 0.965439 TTGGTTCCCTGGCAAAATCG 59.035 50.000 0.00 0.00 0.00 3.34
12 13 2.103941 TGTTTGGTTCCCTGGCAAAATC 59.896 45.455 0.00 0.00 0.00 2.17
13 14 2.122768 TGTTTGGTTCCCTGGCAAAAT 58.877 42.857 0.00 0.00 0.00 1.82
14 15 1.208293 GTGTTTGGTTCCCTGGCAAAA 59.792 47.619 0.00 0.00 0.00 2.44
15 16 0.827368 GTGTTTGGTTCCCTGGCAAA 59.173 50.000 0.00 0.00 0.00 3.68
16 17 0.324738 TGTGTTTGGTTCCCTGGCAA 60.325 50.000 0.00 0.00 0.00 4.52
17 18 1.040339 GTGTGTTTGGTTCCCTGGCA 61.040 55.000 0.00 0.00 0.00 4.92
18 19 1.739667 GTGTGTTTGGTTCCCTGGC 59.260 57.895 0.00 0.00 0.00 4.85
19 20 1.112916 GGGTGTGTTTGGTTCCCTGG 61.113 60.000 0.00 0.00 35.63 4.45
20 21 0.396417 TGGGTGTGTTTGGTTCCCTG 60.396 55.000 0.00 0.00 38.95 4.45
21 22 0.336737 TTGGGTGTGTTTGGTTCCCT 59.663 50.000 0.00 0.00 38.95 4.20
22 23 1.138069 CTTTGGGTGTGTTTGGTTCCC 59.862 52.381 0.00 0.00 38.68 3.97
23 24 1.472552 GCTTTGGGTGTGTTTGGTTCC 60.473 52.381 0.00 0.00 0.00 3.62
24 25 1.472552 GGCTTTGGGTGTGTTTGGTTC 60.473 52.381 0.00 0.00 0.00 3.62
25 26 0.539518 GGCTTTGGGTGTGTTTGGTT 59.460 50.000 0.00 0.00 0.00 3.67
26 27 0.616111 TGGCTTTGGGTGTGTTTGGT 60.616 50.000 0.00 0.00 0.00 3.67
27 28 0.179086 GTGGCTTTGGGTGTGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
28 29 0.823460 AGTGGCTTTGGGTGTGTTTG 59.177 50.000 0.00 0.00 0.00 2.93
29 30 1.111277 GAGTGGCTTTGGGTGTGTTT 58.889 50.000 0.00 0.00 0.00 2.83
30 31 0.258774 AGAGTGGCTTTGGGTGTGTT 59.741 50.000 0.00 0.00 0.00 3.32
31 32 0.179018 GAGAGTGGCTTTGGGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
32 33 0.109342 AGAGAGTGGCTTTGGGTGTG 59.891 55.000 0.00 0.00 0.00 3.82
33 34 0.398318 GAGAGAGTGGCTTTGGGTGT 59.602 55.000 0.00 0.00 0.00 4.16
34 35 0.689623 AGAGAGAGTGGCTTTGGGTG 59.310 55.000 0.00 0.00 0.00 4.61
35 36 0.980423 GAGAGAGAGTGGCTTTGGGT 59.020 55.000 0.00 0.00 0.00 4.51
36 37 0.979665 TGAGAGAGAGTGGCTTTGGG 59.020 55.000 0.00 0.00 0.00 4.12
37 38 1.345741 TGTGAGAGAGAGTGGCTTTGG 59.654 52.381 0.00 0.00 0.00 3.28
38 39 2.224137 TGTGTGAGAGAGAGTGGCTTTG 60.224 50.000 0.00 0.00 0.00 2.77
39 40 2.042464 TGTGTGAGAGAGAGTGGCTTT 58.958 47.619 0.00 0.00 0.00 3.51
40 41 1.342819 GTGTGTGAGAGAGAGTGGCTT 59.657 52.381 0.00 0.00 0.00 4.35
41 42 0.965439 GTGTGTGAGAGAGAGTGGCT 59.035 55.000 0.00 0.00 0.00 4.75
42 43 0.676184 TGTGTGTGAGAGAGAGTGGC 59.324 55.000 0.00 0.00 0.00 5.01
43 44 1.683385 TGTGTGTGTGAGAGAGAGTGG 59.317 52.381 0.00 0.00 0.00 4.00
44 45 3.255395 AGATGTGTGTGTGAGAGAGAGTG 59.745 47.826 0.00 0.00 0.00 3.51
45 46 3.495331 AGATGTGTGTGTGAGAGAGAGT 58.505 45.455 0.00 0.00 0.00 3.24
46 47 4.022503 TGAAGATGTGTGTGTGAGAGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
47 48 3.891366 TGAAGATGTGTGTGTGAGAGAGA 59.109 43.478 0.00 0.00 0.00 3.10
48 49 4.248691 TGAAGATGTGTGTGTGAGAGAG 57.751 45.455 0.00 0.00 0.00 3.20
49 50 4.670896 TTGAAGATGTGTGTGTGAGAGA 57.329 40.909 0.00 0.00 0.00 3.10
50 51 5.467735 TGAATTGAAGATGTGTGTGTGAGAG 59.532 40.000 0.00 0.00 0.00 3.20
51 52 5.367302 TGAATTGAAGATGTGTGTGTGAGA 58.633 37.500 0.00 0.00 0.00 3.27
52 53 5.678132 TGAATTGAAGATGTGTGTGTGAG 57.322 39.130 0.00 0.00 0.00 3.51
53 54 5.764192 TGATGAATTGAAGATGTGTGTGTGA 59.236 36.000 0.00 0.00 0.00 3.58
54 55 6.004408 TGATGAATTGAAGATGTGTGTGTG 57.996 37.500 0.00 0.00 0.00 3.82
55 56 6.039605 TGTTGATGAATTGAAGATGTGTGTGT 59.960 34.615 0.00 0.00 0.00 3.72
56 57 6.440436 TGTTGATGAATTGAAGATGTGTGTG 58.560 36.000 0.00 0.00 0.00 3.82
57 58 6.638096 TGTTGATGAATTGAAGATGTGTGT 57.362 33.333 0.00 0.00 0.00 3.72
58 59 7.358931 GCTTTGTTGATGAATTGAAGATGTGTG 60.359 37.037 0.00 0.00 0.00 3.82
59 60 6.643770 GCTTTGTTGATGAATTGAAGATGTGT 59.356 34.615 0.00 0.00 0.00 3.72
60 61 6.866770 AGCTTTGTTGATGAATTGAAGATGTG 59.133 34.615 0.00 0.00 0.00 3.21
61 62 6.989659 AGCTTTGTTGATGAATTGAAGATGT 58.010 32.000 0.00 0.00 0.00 3.06
62 63 7.273598 CAGAGCTTTGTTGATGAATTGAAGATG 59.726 37.037 0.00 0.00 0.00 2.90
63 64 7.176165 TCAGAGCTTTGTTGATGAATTGAAGAT 59.824 33.333 3.90 0.00 0.00 2.40
64 65 6.487668 TCAGAGCTTTGTTGATGAATTGAAGA 59.512 34.615 3.90 0.00 0.00 2.87
65 66 6.675026 TCAGAGCTTTGTTGATGAATTGAAG 58.325 36.000 3.90 0.00 0.00 3.02
66 67 6.638096 TCAGAGCTTTGTTGATGAATTGAA 57.362 33.333 3.90 0.00 0.00 2.69
67 68 6.208007 ACATCAGAGCTTTGTTGATGAATTGA 59.792 34.615 25.24 0.00 46.99 2.57
68 69 6.387465 ACATCAGAGCTTTGTTGATGAATTG 58.613 36.000 25.24 10.60 46.99 2.32
69 70 6.585695 ACATCAGAGCTTTGTTGATGAATT 57.414 33.333 25.24 10.49 46.99 2.17
70 71 6.585695 AACATCAGAGCTTTGTTGATGAAT 57.414 33.333 25.24 16.19 46.99 2.57
71 72 7.509141 TTAACATCAGAGCTTTGTTGATGAA 57.491 32.000 25.24 15.79 46.99 2.57
72 73 7.692460 ATTAACATCAGAGCTTTGTTGATGA 57.308 32.000 25.24 12.67 46.99 2.92
74 75 7.889469 ACAATTAACATCAGAGCTTTGTTGAT 58.111 30.769 19.15 11.55 35.37 2.57
75 76 7.275888 ACAATTAACATCAGAGCTTTGTTGA 57.724 32.000 19.15 9.93 35.37 3.18
76 77 9.069078 CATACAATTAACATCAGAGCTTTGTTG 57.931 33.333 12.48 12.48 35.37 3.33
79 80 7.478322 AGCATACAATTAACATCAGAGCTTTG 58.522 34.615 0.00 0.00 0.00 2.77
135 136 3.485947 TTTCAGTGCAACAGTGTTGAC 57.514 42.857 34.65 26.93 41.43 3.18
163 164 9.614792 GGTGTGGATATTCTACATCTTTTTACT 57.385 33.333 0.00 0.00 39.99 2.24
183 184 2.158986 TGCCATTTTTGACTTGGTGTGG 60.159 45.455 0.00 0.00 32.90 4.17
200 210 3.351740 CACACATACCCTTGTTATGCCA 58.648 45.455 0.00 0.00 0.00 4.92
201 211 2.687935 CCACACATACCCTTGTTATGCC 59.312 50.000 0.00 0.00 0.00 4.40
202 212 2.099098 GCCACACATACCCTTGTTATGC 59.901 50.000 0.00 0.00 0.00 3.14
203 213 3.620488 AGCCACACATACCCTTGTTATG 58.380 45.455 0.00 0.00 0.00 1.90
204 214 4.719773 TCTAGCCACACATACCCTTGTTAT 59.280 41.667 0.00 0.00 0.00 1.89
205 215 4.081309 GTCTAGCCACACATACCCTTGTTA 60.081 45.833 0.00 0.00 0.00 2.41
206 216 2.910319 TCTAGCCACACATACCCTTGTT 59.090 45.455 0.00 0.00 0.00 2.83
207 217 2.236395 GTCTAGCCACACATACCCTTGT 59.764 50.000 0.00 0.00 0.00 3.16
208 218 2.236146 TGTCTAGCCACACATACCCTTG 59.764 50.000 0.00 0.00 0.00 3.61
209 219 2.236395 GTGTCTAGCCACACATACCCTT 59.764 50.000 9.28 0.00 45.25 3.95
339 350 7.693969 ATTTTGAGAATTCTTGGTAGACTGG 57.306 36.000 9.87 0.00 0.00 4.00
356 368 9.403110 CCTTTGTGATTCAGAACTAATTTTGAG 57.597 33.333 0.00 0.00 31.10 3.02
476 511 3.947196 GGGATGATGTGTTGTGATGCTTA 59.053 43.478 0.00 0.00 0.00 3.09
499 537 6.109359 CCTTGAGTATCTCTACCCTTTTGTG 58.891 44.000 0.00 0.00 34.92 3.33
502 540 4.783227 TGCCTTGAGTATCTCTACCCTTTT 59.217 41.667 0.00 0.00 34.92 2.27
513 551 3.812053 CCAGCTATGTTGCCTTGAGTATC 59.188 47.826 0.00 0.00 0.00 2.24
516 554 1.952367 GCCAGCTATGTTGCCTTGAGT 60.952 52.381 0.00 0.00 0.00 3.41
517 555 0.737219 GCCAGCTATGTTGCCTTGAG 59.263 55.000 0.00 0.00 0.00 3.02
585 623 9.349713 ACTTTCTGACTTTATGGTTCAATACAA 57.650 29.630 0.00 0.00 0.00 2.41
586 624 8.918202 ACTTTCTGACTTTATGGTTCAATACA 57.082 30.769 0.00 0.00 0.00 2.29
590 628 9.179909 TGTTTACTTTCTGACTTTATGGTTCAA 57.820 29.630 0.00 0.00 0.00 2.69
591 629 8.740123 TGTTTACTTTCTGACTTTATGGTTCA 57.260 30.769 0.00 0.00 0.00 3.18
594 632 8.135529 GCTTTGTTTACTTTCTGACTTTATGGT 58.864 33.333 0.00 0.00 0.00 3.55
595 633 8.134895 TGCTTTGTTTACTTTCTGACTTTATGG 58.865 33.333 0.00 0.00 0.00 2.74
596 634 9.515020 TTGCTTTGTTTACTTTCTGACTTTATG 57.485 29.630 0.00 0.00 0.00 1.90
646 684 4.689705 GCTGGATGGGGATTTGATTACTGA 60.690 45.833 0.00 0.00 0.00 3.41
715 763 4.816984 GGGGAGACGAGCGAGGGA 62.817 72.222 0.00 0.00 0.00 4.20
742 795 0.034089 GGTTTGATGGGTGGAGGAGG 60.034 60.000 0.00 0.00 0.00 4.30
785 838 1.699730 GGTTTTTACCTGGCCTGTGT 58.300 50.000 3.32 6.65 0.00 3.72
787 842 0.178944 GGGGTTTTTACCTGGCCTGT 60.179 55.000 3.32 3.69 0.00 4.00
845 902 1.073923 TCCTCTCTGGCTTTTCCAACC 59.926 52.381 0.00 0.00 46.01 3.77
883 940 0.033991 TCCCTCTGTCTCCCTCTTCG 60.034 60.000 0.00 0.00 0.00 3.79
886 943 1.304952 CGTCCCTCTGTCTCCCTCT 59.695 63.158 0.00 0.00 0.00 3.69
910 983 2.626780 GCTTTCCGGGCAAGTGGAC 61.627 63.158 8.22 0.00 32.95 4.02
978 1051 1.144057 CGCCGCAACCCTAGATCTT 59.856 57.895 0.00 0.00 0.00 2.40
1167 1240 3.436028 CCGGGGTAGGAGAGGGGA 61.436 72.222 0.00 0.00 0.00 4.81
1198 1275 1.886542 AGAAAAAGAACCCGGCACATC 59.113 47.619 0.00 0.00 0.00 3.06
1202 1279 1.460273 GGCAGAAAAAGAACCCGGCA 61.460 55.000 0.00 0.00 0.00 5.69
1209 1286 3.708563 CCAAGAACGGCAGAAAAAGAA 57.291 42.857 0.00 0.00 0.00 2.52
1237 1314 2.175715 AGAAACCCCAGAAAGACTGCTT 59.824 45.455 0.00 0.00 44.52 3.91
1254 1331 4.359105 TCCTTCCTCCTATCCGAAAGAAA 58.641 43.478 0.00 0.00 0.00 2.52
1265 1342 5.195960 TCCATCTAACTCTTCCTTCCTCCTA 59.804 44.000 0.00 0.00 0.00 2.94
1266 1343 4.016105 TCCATCTAACTCTTCCTTCCTCCT 60.016 45.833 0.00 0.00 0.00 3.69
1267 1344 4.290942 TCCATCTAACTCTTCCTTCCTCC 58.709 47.826 0.00 0.00 0.00 4.30
1268 1345 5.941555 TTCCATCTAACTCTTCCTTCCTC 57.058 43.478 0.00 0.00 0.00 3.71
1269 1346 5.190726 CCTTTCCATCTAACTCTTCCTTCCT 59.809 44.000 0.00 0.00 0.00 3.36
1270 1347 5.189934 TCCTTTCCATCTAACTCTTCCTTCC 59.810 44.000 0.00 0.00 0.00 3.46
1271 1348 6.301169 TCCTTTCCATCTAACTCTTCCTTC 57.699 41.667 0.00 0.00 0.00 3.46
1272 1349 6.899892 ATCCTTTCCATCTAACTCTTCCTT 57.100 37.500 0.00 0.00 0.00 3.36
1273 1350 6.353429 CCAATCCTTTCCATCTAACTCTTCCT 60.353 42.308 0.00 0.00 0.00 3.36
1274 1351 5.825151 CCAATCCTTTCCATCTAACTCTTCC 59.175 44.000 0.00 0.00 0.00 3.46
1275 1352 5.298026 GCCAATCCTTTCCATCTAACTCTTC 59.702 44.000 0.00 0.00 0.00 2.87
1276 1353 5.196695 GCCAATCCTTTCCATCTAACTCTT 58.803 41.667 0.00 0.00 0.00 2.85
1277 1354 4.684485 CGCCAATCCTTTCCATCTAACTCT 60.684 45.833 0.00 0.00 0.00 3.24
1278 1355 3.561725 CGCCAATCCTTTCCATCTAACTC 59.438 47.826 0.00 0.00 0.00 3.01
1279 1356 3.199946 TCGCCAATCCTTTCCATCTAACT 59.800 43.478 0.00 0.00 0.00 2.24
1280 1357 3.541632 TCGCCAATCCTTTCCATCTAAC 58.458 45.455 0.00 0.00 0.00 2.34
1281 1358 3.199946 ACTCGCCAATCCTTTCCATCTAA 59.800 43.478 0.00 0.00 0.00 2.10
1282 1359 2.771943 ACTCGCCAATCCTTTCCATCTA 59.228 45.455 0.00 0.00 0.00 1.98
1283 1360 1.561542 ACTCGCCAATCCTTTCCATCT 59.438 47.619 0.00 0.00 0.00 2.90
1284 1361 1.943340 GACTCGCCAATCCTTTCCATC 59.057 52.381 0.00 0.00 0.00 3.51
1285 1362 1.743772 CGACTCGCCAATCCTTTCCAT 60.744 52.381 0.00 0.00 0.00 3.41
1286 1363 0.391130 CGACTCGCCAATCCTTTCCA 60.391 55.000 0.00 0.00 0.00 3.53
1287 1364 2.384203 CGACTCGCCAATCCTTTCC 58.616 57.895 0.00 0.00 0.00 3.13
1322 1430 2.517402 ACCGTTGGCCAAGCGAAA 60.517 55.556 29.76 5.32 0.00 3.46
1323 1431 3.283684 CACCGTTGGCCAAGCGAA 61.284 61.111 29.76 6.03 0.00 4.70
1406 1516 1.528309 CACGGCACCAAAGGAACCT 60.528 57.895 0.00 0.00 0.00 3.50
1436 1555 2.159585 CGCATTTCATCGTTAGGCAACA 60.160 45.455 0.00 0.00 41.41 3.33
1555 1676 5.014018 ACAAGAACCAAAAATGGGGCAATAT 59.986 36.000 0.00 0.00 0.00 1.28
1558 1679 2.507471 ACAAGAACCAAAAATGGGGCAA 59.493 40.909 0.00 0.00 0.00 4.52
1559 1680 2.122768 ACAAGAACCAAAAATGGGGCA 58.877 42.857 0.00 0.00 0.00 5.36
1560 1681 2.928801 ACAAGAACCAAAAATGGGGC 57.071 45.000 0.00 0.00 0.00 5.80
1561 1682 3.390967 AGGAACAAGAACCAAAAATGGGG 59.609 43.478 0.00 0.00 0.00 4.96
1562 1683 4.687901 AGGAACAAGAACCAAAAATGGG 57.312 40.909 0.00 0.00 0.00 4.00
1565 1688 4.080638 TGCCAAGGAACAAGAACCAAAAAT 60.081 37.500 0.00 0.00 0.00 1.82
1569 1692 1.754226 GTGCCAAGGAACAAGAACCAA 59.246 47.619 0.00 0.00 0.00 3.67
1670 1832 9.344309 GAATCTAATTCTATTACCGAGCTACAC 57.656 37.037 0.00 0.00 36.37 2.90
1728 1892 3.235157 TGCAAATGCCAGTTCTATTGC 57.765 42.857 2.46 0.00 42.49 3.56
1758 1922 5.794945 CGTTGCTGACACCAATAAAATACAG 59.205 40.000 0.00 0.00 0.00 2.74
1780 1944 0.534203 ACCAAATCTGCACGGTTCGT 60.534 50.000 0.00 0.00 42.36 3.85
1809 1973 4.953940 AAGGCTAAGAAAATGTTTGCCA 57.046 36.364 13.33 0.00 45.10 4.92
1866 2031 7.822822 ACCTAAGTACAATGTACATCCTTTGAC 59.177 37.037 23.52 5.39 0.00 3.18
1945 2110 6.693545 CAGGAGATGAAAGTATACTGTTCGTC 59.306 42.308 24.48 24.48 37.50 4.20
2071 2240 8.921205 ACAAATATTTCGGTACAGAGGTAGTAT 58.079 33.333 0.00 0.00 0.00 2.12
2072 2241 8.297470 ACAAATATTTCGGTACAGAGGTAGTA 57.703 34.615 0.00 0.00 0.00 1.82
2073 2242 7.179076 ACAAATATTTCGGTACAGAGGTAGT 57.821 36.000 0.00 0.00 0.00 2.73
2074 2243 8.411683 ACTACAAATATTTCGGTACAGAGGTAG 58.588 37.037 0.00 5.76 0.00 3.18
2075 2244 8.297470 ACTACAAATATTTCGGTACAGAGGTA 57.703 34.615 0.00 0.00 0.00 3.08
2076 2245 7.179076 ACTACAAATATTTCGGTACAGAGGT 57.821 36.000 0.00 0.00 0.00 3.85
2077 2246 7.011109 CCAACTACAAATATTTCGGTACAGAGG 59.989 40.741 0.00 0.00 0.00 3.69
2078 2247 7.011109 CCCAACTACAAATATTTCGGTACAGAG 59.989 40.741 0.00 0.00 0.00 3.35
2079 2248 6.819649 CCCAACTACAAATATTTCGGTACAGA 59.180 38.462 0.00 0.00 0.00 3.41
2080 2249 6.037830 CCCCAACTACAAATATTTCGGTACAG 59.962 42.308 0.00 0.00 0.00 2.74
2081 2250 5.881443 CCCCAACTACAAATATTTCGGTACA 59.119 40.000 0.00 0.00 0.00 2.90
2082 2251 5.297527 CCCCCAACTACAAATATTTCGGTAC 59.702 44.000 0.00 0.00 0.00 3.34
2083 2252 5.191323 TCCCCCAACTACAAATATTTCGGTA 59.809 40.000 0.00 0.00 0.00 4.02
2084 2253 4.018233 TCCCCCAACTACAAATATTTCGGT 60.018 41.667 0.00 0.00 0.00 4.69
2085 2254 4.528920 TCCCCCAACTACAAATATTTCGG 58.471 43.478 0.00 0.00 0.00 4.30
2086 2255 5.650703 AGTTCCCCCAACTACAAATATTTCG 59.349 40.000 0.00 0.00 44.13 3.46
2087 2256 7.039293 ACAAGTTCCCCCAACTACAAATATTTC 60.039 37.037 0.00 0.00 45.32 2.17
2088 2257 6.785466 ACAAGTTCCCCCAACTACAAATATTT 59.215 34.615 0.00 0.00 45.32 1.40
2089 2258 6.319715 ACAAGTTCCCCCAACTACAAATATT 58.680 36.000 0.00 0.00 45.32 1.28
2090 2259 5.899278 ACAAGTTCCCCCAACTACAAATAT 58.101 37.500 0.00 0.00 45.32 1.28
2091 2260 5.327737 ACAAGTTCCCCCAACTACAAATA 57.672 39.130 0.00 0.00 45.32 1.40
2092 2261 4.193240 ACAAGTTCCCCCAACTACAAAT 57.807 40.909 0.00 0.00 45.32 2.32
2093 2262 3.673543 ACAAGTTCCCCCAACTACAAA 57.326 42.857 0.00 0.00 45.32 2.83
2094 2263 3.717913 AGTACAAGTTCCCCCAACTACAA 59.282 43.478 0.00 0.00 45.32 2.41
2095 2264 3.320129 AGTACAAGTTCCCCCAACTACA 58.680 45.455 0.00 0.00 45.32 2.74
2096 2265 4.529769 ACTAGTACAAGTTCCCCCAACTAC 59.470 45.833 0.00 0.00 45.32 2.73
2097 2266 4.755437 ACTAGTACAAGTTCCCCCAACTA 58.245 43.478 0.00 0.00 45.32 2.24
2099 2268 4.362470 AACTAGTACAAGTTCCCCCAAC 57.638 45.455 0.00 0.00 34.60 3.77
2100 2269 4.202493 GGAAACTAGTACAAGTTCCCCCAA 60.202 45.833 10.93 0.00 38.76 4.12
2101 2270 3.328637 GGAAACTAGTACAAGTTCCCCCA 59.671 47.826 10.93 0.00 38.76 4.96
2102 2271 3.307975 GGGAAACTAGTACAAGTTCCCCC 60.308 52.174 23.74 7.79 45.80 5.40
2103 2272 3.947868 GGGAAACTAGTACAAGTTCCCC 58.052 50.000 23.74 11.38 45.50 4.81
2104 2273 3.307975 GGGGGAAACTAGTACAAGTTCCC 60.308 52.174 25.26 25.26 40.44 3.97
2105 2274 3.328637 TGGGGGAAACTAGTACAAGTTCC 59.671 47.826 12.95 12.95 38.76 3.62
2106 2275 4.628963 TGGGGGAAACTAGTACAAGTTC 57.371 45.455 0.00 0.00 38.76 3.01
2107 2276 4.414514 AGTTGGGGGAAACTAGTACAAGTT 59.585 41.667 0.00 0.00 41.46 2.66
2108 2277 3.978672 AGTTGGGGGAAACTAGTACAAGT 59.021 43.478 0.00 0.00 38.62 3.16
2109 2278 4.635699 AGTTGGGGGAAACTAGTACAAG 57.364 45.455 0.00 0.00 38.62 3.16
2110 2279 5.157395 AGTAGTTGGGGGAAACTAGTACAA 58.843 41.667 0.00 0.00 42.07 2.41
2111 2280 4.755437 AGTAGTTGGGGGAAACTAGTACA 58.245 43.478 0.00 0.00 42.07 2.90
2112 2281 5.954752 ACTAGTAGTTGGGGGAAACTAGTAC 59.045 44.000 10.80 0.00 46.74 2.73
2113 2282 6.157862 ACTAGTAGTTGGGGGAAACTAGTA 57.842 41.667 10.80 9.94 46.74 1.82
2114 2283 5.020941 ACTAGTAGTTGGGGGAAACTAGT 57.979 43.478 7.46 7.46 44.90 2.57
2115 2284 7.672122 AATACTAGTAGTTGGGGGAAACTAG 57.328 40.000 8.40 6.33 41.97 2.57
2116 2285 7.147846 CGAAATACTAGTAGTTGGGGGAAACTA 60.148 40.741 19.55 0.00 40.77 2.24
2117 2286 6.351626 CGAAATACTAGTAGTTGGGGGAAACT 60.352 42.308 19.55 0.00 42.89 2.66
2118 2287 5.814188 CGAAATACTAGTAGTTGGGGGAAAC 59.186 44.000 19.55 2.76 0.00 2.78
2119 2288 5.104817 CCGAAATACTAGTAGTTGGGGGAAA 60.105 44.000 27.07 0.00 36.04 3.13
2120 2289 4.406649 CCGAAATACTAGTAGTTGGGGGAA 59.593 45.833 27.07 0.00 36.04 3.97
2121 2290 3.962718 CCGAAATACTAGTAGTTGGGGGA 59.037 47.826 27.07 0.00 36.04 4.81
2122 2291 3.708121 ACCGAAATACTAGTAGTTGGGGG 59.292 47.826 33.28 24.91 41.28 5.40
2123 2292 5.506317 CGTACCGAAATACTAGTAGTTGGGG 60.506 48.000 33.28 26.70 41.28 4.96
2124 2293 5.506317 CCGTACCGAAATACTAGTAGTTGGG 60.506 48.000 30.63 30.63 42.20 4.12
2125 2294 5.296780 TCCGTACCGAAATACTAGTAGTTGG 59.703 44.000 19.55 20.06 0.00 3.77
2126 2295 6.363577 TCCGTACCGAAATACTAGTAGTTG 57.636 41.667 19.55 9.20 0.00 3.16
2127 2296 5.529060 CCTCCGTACCGAAATACTAGTAGTT 59.471 44.000 15.05 15.05 0.00 2.24
2128 2297 5.059833 CCTCCGTACCGAAATACTAGTAGT 58.940 45.833 8.85 8.14 0.00 2.73
2129 2298 4.453819 CCCTCCGTACCGAAATACTAGTAG 59.546 50.000 8.85 0.00 0.00 2.57
2130 2299 4.102524 TCCCTCCGTACCGAAATACTAGTA 59.897 45.833 4.77 4.77 0.00 1.82
2131 2300 3.117888 TCCCTCCGTACCGAAATACTAGT 60.118 47.826 0.00 0.00 0.00 2.57
2132 2301 3.480470 TCCCTCCGTACCGAAATACTAG 58.520 50.000 0.00 0.00 0.00 2.57
2133 2302 3.117888 ACTCCCTCCGTACCGAAATACTA 60.118 47.826 0.00 0.00 0.00 1.82
2134 2303 2.305009 CTCCCTCCGTACCGAAATACT 58.695 52.381 0.00 0.00 0.00 2.12
2135 2304 2.027385 ACTCCCTCCGTACCGAAATAC 58.973 52.381 0.00 0.00 0.00 1.89
2136 2305 2.442236 ACTCCCTCCGTACCGAAATA 57.558 50.000 0.00 0.00 0.00 1.40
2137 2306 2.442236 TACTCCCTCCGTACCGAAAT 57.558 50.000 0.00 0.00 0.00 2.17
2138 2307 2.214376 TTACTCCCTCCGTACCGAAA 57.786 50.000 0.00 0.00 0.00 3.46
2139 2308 2.442236 ATTACTCCCTCCGTACCGAA 57.558 50.000 0.00 0.00 0.00 4.30
2140 2309 2.172505 TGTATTACTCCCTCCGTACCGA 59.827 50.000 0.00 0.00 0.00 4.69
2141 2310 2.291741 GTGTATTACTCCCTCCGTACCG 59.708 54.545 0.00 0.00 0.00 4.02
2142 2311 3.290710 TGTGTATTACTCCCTCCGTACC 58.709 50.000 0.00 0.00 0.00 3.34
2143 2312 4.989279 TTGTGTATTACTCCCTCCGTAC 57.011 45.455 0.00 0.00 0.00 3.67
2144 2313 4.160252 GGTTTGTGTATTACTCCCTCCGTA 59.840 45.833 0.00 0.00 0.00 4.02
2145 2314 3.055602 GGTTTGTGTATTACTCCCTCCGT 60.056 47.826 0.00 0.00 0.00 4.69
2146 2315 3.197116 AGGTTTGTGTATTACTCCCTCCG 59.803 47.826 0.00 0.00 0.00 4.63
2147 2316 4.383880 GGAGGTTTGTGTATTACTCCCTCC 60.384 50.000 16.34 16.34 43.90 4.30
2148 2317 4.767478 GGAGGTTTGTGTATTACTCCCTC 58.233 47.826 0.00 9.44 38.80 4.30
2149 2318 4.838904 GGAGGTTTGTGTATTACTCCCT 57.161 45.455 0.00 0.00 38.80 4.20
2151 2320 4.383880 GGAGGGAGGTTTGTGTATTACTCC 60.384 50.000 0.00 0.00 42.84 3.85
2152 2321 4.470304 AGGAGGGAGGTTTGTGTATTACTC 59.530 45.833 0.00 0.00 0.00 2.59
2153 2322 4.225267 CAGGAGGGAGGTTTGTGTATTACT 59.775 45.833 0.00 0.00 0.00 2.24
2154 2323 4.224370 TCAGGAGGGAGGTTTGTGTATTAC 59.776 45.833 0.00 0.00 0.00 1.89
2168 2340 2.268796 TTGACATGGATCAGGAGGGA 57.731 50.000 0.00 0.00 0.00 4.20
2252 2425 8.854614 AGTGCACAAAATAAAGAGATAAGAGT 57.145 30.769 21.04 0.00 0.00 3.24
2320 2495 6.039270 CCAATTCCTTTCGCTCCAATAACATA 59.961 38.462 0.00 0.00 0.00 2.29
2567 2742 5.427378 TCTTTGACGAATTCATGGATAGCA 58.573 37.500 6.22 0.00 32.84 3.49
2568 2743 5.991328 TCTTTGACGAATTCATGGATAGC 57.009 39.130 6.22 0.00 32.84 2.97
2638 2827 6.427242 CAGGAGACCATGATGTTGATGATAAG 59.573 42.308 0.00 0.00 0.00 1.73
2694 2885 8.753175 CATAAACTTAACGTAGGAGTCTAATGC 58.247 37.037 0.00 0.00 0.00 3.56
2704 2895 7.385752 TGAAGTGGAACATAAACTTAACGTAGG 59.614 37.037 0.00 0.00 44.52 3.18
2743 2934 5.378230 ACATGGAATCAGAGGCAGATTAA 57.622 39.130 0.00 0.00 35.93 1.40
2744 2935 5.378230 AACATGGAATCAGAGGCAGATTA 57.622 39.130 0.00 0.00 35.93 1.75
2745 2936 3.947612 ACATGGAATCAGAGGCAGATT 57.052 42.857 0.00 0.40 38.35 2.40
2746 2937 3.947612 AACATGGAATCAGAGGCAGAT 57.052 42.857 0.00 0.00 0.00 2.90
2747 2938 3.726557 AAACATGGAATCAGAGGCAGA 57.273 42.857 0.00 0.00 0.00 4.26
2806 2997 5.278808 GGAAACCTTTATTTCGGCTGTTTCT 60.279 40.000 10.79 0.00 39.76 2.52
3013 3204 8.759481 ATACTCACTCATGATCACTAGAAAGA 57.241 34.615 12.01 6.76 33.22 2.52
3060 3251 8.058847 ACTATTGATATTGGTTAGAAAGGCCAA 58.941 33.333 5.01 0.00 45.02 4.52
3129 3408 4.607293 ATGGACGTACAGCATACATCAT 57.393 40.909 6.62 0.00 0.00 2.45
3144 3423 4.640201 ACCACCATATTCAAGAAATGGACG 59.360 41.667 20.64 14.89 42.36 4.79
3199 3478 3.719268 ACCTGCAATGACATACTCCAA 57.281 42.857 0.00 0.00 0.00 3.53
3201 3480 4.960938 TCATACCTGCAATGACATACTCC 58.039 43.478 0.00 0.00 0.00 3.85
3347 3626 1.411246 ACACGTGCTAACCTCTCAACA 59.589 47.619 17.22 0.00 0.00 3.33
3479 3758 7.703058 AAAAACAATACATACTTCCTCCCTG 57.297 36.000 0.00 0.00 0.00 4.45
3510 3789 8.707839 GCAATAAATAAAGCTGCTAACAAAACA 58.292 29.630 0.90 0.00 0.00 2.83
3558 3837 2.612972 GCCTGTGAGCAAAGCAGTAGTA 60.613 50.000 0.00 0.00 0.00 1.82
3561 3840 0.397941 AGCCTGTGAGCAAAGCAGTA 59.602 50.000 0.00 0.00 34.23 2.74
3611 3890 1.649321 ATCAACAGCTCACTCTCCCA 58.351 50.000 0.00 0.00 0.00 4.37
3737 4016 3.858503 GCCTTTCAATCTCAACCTGCAAC 60.859 47.826 0.00 0.00 0.00 4.17
3898 4177 0.319405 AGCAAATGCCAACTCTTGCC 59.681 50.000 0.94 0.00 44.14 4.52
4112 4391 4.327680 CTTCCCGTTTCTCCTCTTCAAAT 58.672 43.478 0.00 0.00 0.00 2.32
4230 4509 0.393537 AGCTCCATTCTTTGGGCTCG 60.394 55.000 2.89 0.00 44.12 5.03
4337 4616 4.697352 TCAGTAATTCTTGCAGCTTCCTTC 59.303 41.667 0.00 0.00 0.00 3.46
4349 4628 6.031751 ACTCTTCGCTCTTCAGTAATTCTT 57.968 37.500 0.00 0.00 0.00 2.52
4505 4784 1.167851 TAGTCAGCCAACTTGCATGC 58.832 50.000 11.82 11.82 0.00 4.06
4522 4801 6.882656 TCTTCCCTCTCATGTTGAATCTTAG 58.117 40.000 0.00 0.00 0.00 2.18
4808 5087 6.732896 TTAAGGGCTTCAATGGTGTTTTTA 57.267 33.333 0.00 0.00 0.00 1.52
5042 5348 1.952296 AGAAGCTTTGGTGCAGAACAG 59.048 47.619 0.00 0.00 34.99 3.16
5123 5429 2.677836 GCGTTTGAATATCACCTGAGCA 59.322 45.455 0.00 0.00 0.00 4.26
5277 5583 6.238076 CCAACTTTTGCACCATTAACAACTTC 60.238 38.462 0.00 0.00 0.00 3.01
5346 5652 2.418334 GGTACTTCCGCCTTGGTTCTAG 60.418 54.545 0.00 0.00 39.52 2.43
5443 5754 8.506437 CATTCGCAGGAATTAGCATAAAGATAA 58.494 33.333 0.00 0.00 40.90 1.75
5464 5775 8.910666 TGTTAATGCAGTACAAAATTTCATTCG 58.089 29.630 0.00 0.00 0.00 3.34
5468 5779 8.194104 ACAGTGTTAATGCAGTACAAAATTTCA 58.806 29.630 0.00 0.00 0.00 2.69
5469 5780 8.574196 ACAGTGTTAATGCAGTACAAAATTTC 57.426 30.769 0.00 0.00 0.00 2.17
5471 5782 7.014230 AGGACAGTGTTAATGCAGTACAAAATT 59.986 33.333 0.00 0.00 0.00 1.82
5472 5783 6.490040 AGGACAGTGTTAATGCAGTACAAAAT 59.510 34.615 0.00 0.00 0.00 1.82
5477 5788 6.106673 ACATAGGACAGTGTTAATGCAGTAC 58.893 40.000 0.00 0.00 0.00 2.73
5553 5864 2.849943 AGATAATACACCAAGTGGGGCA 59.150 45.455 0.00 0.00 44.30 5.36
5758 6069 9.542462 TCGACAATATTTATTAACTGAAGAGGG 57.458 33.333 0.00 0.00 0.00 4.30
5896 6366 0.179034 GCTGGCAGGATAGACTTGGG 60.179 60.000 17.64 0.00 0.00 4.12
6030 6508 1.662629 CGCCAGACAGTTGATAAGCTG 59.337 52.381 0.00 0.00 38.58 4.24
6046 6524 1.539388 CATCAAAACAGTAAGGCGCCA 59.461 47.619 31.54 5.56 0.00 5.69
6049 6527 3.559238 AAGCATCAAAACAGTAAGGCG 57.441 42.857 0.00 0.00 0.00 5.52
6084 6609 1.588674 CAGTAGTTGGTTCGGTTGCA 58.411 50.000 0.00 0.00 0.00 4.08
6109 6634 0.322816 TGCTCATCCCTGCCTTCAAC 60.323 55.000 0.00 0.00 0.00 3.18
6242 6767 6.901300 ACCTACAGTCATCTCTGTATGTCTA 58.099 40.000 6.95 0.00 45.74 2.59
6266 6791 4.530553 TCATAAGAGCCAGGTTACTGTCAA 59.469 41.667 0.00 0.00 43.36 3.18
6274 6799 3.084786 GCAACTTCATAAGAGCCAGGTT 58.915 45.455 0.00 0.00 0.00 3.50
6329 6854 1.754380 GCACCCAACCTTTCAACCCC 61.754 60.000 0.00 0.00 0.00 4.95
6386 6911 1.338960 TGATTCATCACAGCGGCTTCA 60.339 47.619 0.00 0.00 0.00 3.02
6418 6943 7.023575 CCTTCAGGATGTGAAAATAAAGAACG 58.976 38.462 0.00 0.00 44.83 3.95
6483 7008 3.076785 TCCTACACCCCCAATCAATTTGT 59.923 43.478 0.00 0.00 33.15 2.83
6510 7035 6.401394 GCAGCACTAATACTCATCATATGGA 58.599 40.000 2.13 0.00 0.00 3.41
6532 7057 1.302913 CACACCACCCATAACGGCA 60.303 57.895 0.00 0.00 0.00 5.69
6533 7058 1.003112 TCACACCACCCATAACGGC 60.003 57.895 0.00 0.00 0.00 5.68
6534 7059 0.035598 TGTCACACCACCCATAACGG 59.964 55.000 0.00 0.00 0.00 4.44
6556 7081 0.179045 AAACGAGCACTGAACAGGCT 60.179 50.000 14.20 14.20 37.56 4.58
6664 7190 1.153745 CCGGGTGCTCGAAGAAGAG 60.154 63.158 0.00 0.00 41.03 2.85
6665 7191 1.469335 AACCGGGTGCTCGAAGAAGA 61.469 55.000 6.32 0.00 34.09 2.87
6666 7192 1.004918 AACCGGGTGCTCGAAGAAG 60.005 57.895 6.32 0.00 34.09 2.85
6691 7222 1.400494 GCAACAGTCGAAACAACACCT 59.600 47.619 0.00 0.00 0.00 4.00
6787 7318 1.270907 ACATCTGACCTGACCTGACC 58.729 55.000 0.00 0.00 0.00 4.02
6788 7319 3.764434 TCTAACATCTGACCTGACCTGAC 59.236 47.826 0.00 0.00 0.00 3.51
6789 7320 4.019858 CTCTAACATCTGACCTGACCTGA 58.980 47.826 0.00 0.00 0.00 3.86
6790 7321 3.131933 CCTCTAACATCTGACCTGACCTG 59.868 52.174 0.00 0.00 0.00 4.00
6791 7322 3.245803 ACCTCTAACATCTGACCTGACCT 60.246 47.826 0.00 0.00 0.00 3.85
6792 7323 3.100671 ACCTCTAACATCTGACCTGACC 58.899 50.000 0.00 0.00 0.00 4.02
6793 7324 5.194432 TCTACCTCTAACATCTGACCTGAC 58.806 45.833 0.00 0.00 0.00 3.51
6794 7325 5.044772 ACTCTACCTCTAACATCTGACCTGA 60.045 44.000 0.00 0.00 0.00 3.86
6795 7326 5.197451 ACTCTACCTCTAACATCTGACCTG 58.803 45.833 0.00 0.00 0.00 4.00
6796 7327 5.459982 ACTCTACCTCTAACATCTGACCT 57.540 43.478 0.00 0.00 0.00 3.85
6881 7456 8.682016 GCGTATTGTAAATTTCTGCATATCAAC 58.318 33.333 0.00 0.00 0.00 3.18
6882 7457 8.401709 TGCGTATTGTAAATTTCTGCATATCAA 58.598 29.630 0.00 0.00 0.00 2.57
6892 7467 8.667987 TTGTTGATCTGCGTATTGTAAATTTC 57.332 30.769 0.00 0.00 0.00 2.17
6909 7484 7.014092 TCAAATTGCAAAACCTTTGTTGATC 57.986 32.000 18.08 0.00 34.13 2.92
6914 7489 8.907222 AAGATATCAAATTGCAAAACCTTTGT 57.093 26.923 18.08 10.97 31.98 2.83
6924 7499 6.101332 GCTCCAACAAAGATATCAAATTGCA 58.899 36.000 5.32 0.00 0.00 4.08
6927 7502 9.729281 AAAATGCTCCAACAAAGATATCAAATT 57.271 25.926 5.32 0.00 0.00 1.82
6941 7517 7.652727 AGAAAGTAGAAGAAAAATGCTCCAAC 58.347 34.615 0.00 0.00 0.00 3.77
6943 7519 7.307989 CGAAGAAAGTAGAAGAAAAATGCTCCA 60.308 37.037 0.00 0.00 0.00 3.86
6972 7548 5.175127 TCAAAGCAGCGACAAGTAATATGA 58.825 37.500 0.00 0.00 0.00 2.15
6994 7570 6.421801 AGCTCAAAATGCAACAAACTTGTATC 59.578 34.615 0.00 0.00 41.31 2.24
7037 7614 3.997762 TCTAACTGCTACGGCTCAAAAA 58.002 40.909 0.00 0.00 39.59 1.94
7038 7615 3.671008 TCTAACTGCTACGGCTCAAAA 57.329 42.857 0.00 0.00 39.59 2.44
7039 7616 3.056107 ACATCTAACTGCTACGGCTCAAA 60.056 43.478 0.00 0.00 39.59 2.69
7040 7617 2.496070 ACATCTAACTGCTACGGCTCAA 59.504 45.455 0.00 0.00 39.59 3.02
7041 7618 2.100197 ACATCTAACTGCTACGGCTCA 58.900 47.619 0.00 0.00 39.59 4.26
7042 7619 2.873133 ACATCTAACTGCTACGGCTC 57.127 50.000 0.00 0.00 39.59 4.70
7043 7620 2.623889 CCTACATCTAACTGCTACGGCT 59.376 50.000 0.00 0.00 39.59 5.52
7046 7623 2.288273 GGCCCTACATCTAACTGCTACG 60.288 54.545 0.00 0.00 0.00 3.51
7047 7624 2.288273 CGGCCCTACATCTAACTGCTAC 60.288 54.545 0.00 0.00 0.00 3.58
7048 7625 1.961394 CGGCCCTACATCTAACTGCTA 59.039 52.381 0.00 0.00 0.00 3.49
7054 7633 3.491964 CGAATTGTCGGCCCTACATCTAA 60.492 47.826 6.42 0.00 43.81 2.10
7111 7691 3.193263 CCCTCTTGATTCATGTGTCTCG 58.807 50.000 0.00 0.00 0.00 4.04
7134 7714 3.632080 TGTAGTGCCACCCACCGG 61.632 66.667 0.00 0.00 45.83 5.28
7135 7715 2.358247 GTGTAGTGCCACCCACCG 60.358 66.667 4.37 0.00 45.83 4.94
7182 7762 3.944015 CCAGGAGAGATTTAAACAGGCAG 59.056 47.826 0.00 0.00 0.00 4.85
7184 7764 2.685388 GCCAGGAGAGATTTAAACAGGC 59.315 50.000 0.00 0.00 0.00 4.85
7189 7769 5.520748 AAAGGAGCCAGGAGAGATTTAAA 57.479 39.130 0.00 0.00 0.00 1.52
7198 7778 4.115401 GCAAATAAAAAGGAGCCAGGAG 57.885 45.455 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.