Multiple sequence alignment - TraesCS3B01G336700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G336700 chr3B 100.000 5941 0 0 1 5941 542730503 542736443 0.000000e+00 10972.0
1 TraesCS3B01G336700 chr3B 95.667 300 12 1 150 449 584454566 584454864 1.160000e-131 481.0
2 TraesCS3B01G336700 chr3B 94.949 297 15 0 154 450 503859707 503860003 3.240000e-127 466.0
3 TraesCS3B01G336700 chr3B 94.949 297 15 0 154 450 788594110 788594406 3.240000e-127 466.0
4 TraesCS3B01G336700 chr3B 88.961 308 26 4 781 1085 542724441 542724743 2.020000e-99 374.0
5 TraesCS3B01G336700 chr3B 84.211 152 12 6 654 799 542724282 542724427 2.890000e-28 137.0
6 TraesCS3B01G336700 chr3D 94.113 3754 155 24 627 4344 416210687 416214410 0.000000e+00 5648.0
7 TraesCS3B01G336700 chr3D 89.537 1166 81 13 4346 5487 416214454 416215602 0.000000e+00 1439.0
8 TraesCS3B01G336700 chr3D 97.351 302 2 1 5565 5860 158938843 158939144 5.310000e-140 508.0
9 TraesCS3B01G336700 chr3D 86.557 305 35 3 784 1085 416195801 416196102 1.230000e-86 331.0
10 TraesCS3B01G336700 chr3D 84.270 356 33 13 456 799 416193710 416194054 5.740000e-85 326.0
11 TraesCS3B01G336700 chr3D 94.054 185 6 5 463 643 416210443 416210626 5.860000e-70 276.0
12 TraesCS3B01G336700 chr3D 89.922 129 4 7 28 155 416199433 416199553 2.220000e-34 158.0
13 TraesCS3B01G336700 chr3D 95.385 65 2 1 680 743 416195265 416195329 1.050000e-17 102.0
14 TraesCS3B01G336700 chr3A 92.582 2049 83 33 456 2449 534185626 534183592 0.000000e+00 2878.0
15 TraesCS3B01G336700 chr3A 94.440 1295 63 5 2451 3741 534183513 534182224 0.000000e+00 1984.0
16 TraesCS3B01G336700 chr3A 91.941 1154 62 19 4346 5487 534180592 534179458 0.000000e+00 1587.0
17 TraesCS3B01G336700 chr3A 95.735 422 16 2 3925 4344 534181863 534181442 0.000000e+00 678.0
18 TraesCS3B01G336700 chr3A 95.146 206 8 2 3723 3926 534182211 534182006 2.070000e-84 324.0
19 TraesCS3B01G336700 chr3A 85.065 308 40 3 781 1085 534197621 534197317 5.780000e-80 309.0
20 TraesCS3B01G336700 chr3A 88.535 157 15 2 3213 3366 401802836 401802992 2.830000e-43 187.0
21 TraesCS3B01G336700 chr3A 92.248 129 9 1 3766 3894 171061299 171061426 1.320000e-41 182.0
22 TraesCS3B01G336700 chr3A 86.131 137 15 4 2840 2972 401802696 401802832 1.730000e-30 145.0
23 TraesCS3B01G336700 chr7D 90.309 1971 125 42 1926 3876 6440206 6442130 0.000000e+00 2521.0
24 TraesCS3B01G336700 chr7D 92.616 623 30 6 1289 1906 6439304 6439915 0.000000e+00 881.0
25 TraesCS3B01G336700 chr7D 86.867 632 33 25 456 1063 6438697 6439302 0.000000e+00 662.0
26 TraesCS3B01G336700 chr7D 93.224 428 22 6 3922 4344 6442130 6442555 1.820000e-174 623.0
27 TraesCS3B01G336700 chr7D 92.803 264 16 1 4346 4606 6442602 6442865 4.350000e-101 379.0
28 TraesCS3B01G336700 chr7D 81.061 132 7 10 28 159 6438561 6438674 8.200000e-14 89.8
29 TraesCS3B01G336700 chr1D 97.690 303 1 1 5564 5860 200552518 200552820 3.170000e-142 516.0
30 TraesCS3B01G336700 chr5B 97.682 302 1 1 5565 5860 429065212 429065513 1.140000e-141 514.0
31 TraesCS3B01G336700 chr5B 95.333 300 14 0 150 449 488192934 488193233 1.500000e-130 477.0
32 TraesCS3B01G336700 chr5B 87.838 148 18 0 3219 3366 274092596 274092743 2.200000e-39 174.0
33 TraesCS3B01G336700 chrUn 97.297 296 8 0 5565 5860 362351252 362350957 2.470000e-138 503.0
34 TraesCS3B01G336700 chrUn 97.297 296 7 1 5565 5860 355920817 355920523 8.890000e-138 501.0
35 TraesCS3B01G336700 chrUn 95.695 302 7 1 5565 5860 341019608 341019307 1.160000e-131 481.0
36 TraesCS3B01G336700 chr2D 97.297 296 8 0 5565 5860 591996043 591995748 2.470000e-138 503.0
37 TraesCS3B01G336700 chr2D 89.542 153 14 2 3219 3370 412931172 412931323 6.080000e-45 193.0
38 TraesCS3B01G336700 chr2D 87.591 137 13 4 2840 2972 412931025 412931161 7.970000e-34 156.0
39 TraesCS3B01G336700 chr4B 96.622 296 10 0 154 449 27117667 27117962 5.350000e-135 492.0
40 TraesCS3B01G336700 chr2B 96.284 296 11 0 154 449 139803983 139803688 2.490000e-133 486.0
41 TraesCS3B01G336700 chr2B 95.946 296 11 1 154 449 147051761 147052055 4.160000e-131 479.0
42 TraesCS3B01G336700 chr2B 93.130 131 9 0 3764 3894 663372212 663372082 6.080000e-45 193.0
43 TraesCS3B01G336700 chr5D 96.284 296 10 1 5565 5860 523037813 523038107 8.950000e-133 484.0
44 TraesCS3B01G336700 chr5D 88.816 152 16 1 3219 3370 123978632 123978782 1.020000e-42 185.0
45 TraesCS3B01G336700 chr5D 87.591 137 13 4 2840 2972 123978485 123978621 7.970000e-34 156.0
46 TraesCS3B01G336700 chr6D 95.681 301 7 1 5565 5859 431005782 431006082 4.160000e-131 479.0
47 TraesCS3B01G336700 chr6B 95.623 297 13 0 154 450 166642719 166642423 1.500000e-130 477.0
48 TraesCS3B01G336700 chr6B 91.603 131 11 0 3764 3894 19453622 19453752 1.320000e-41 182.0
49 TraesCS3B01G336700 chr1B 95.302 298 13 1 154 450 398900532 398900829 6.970000e-129 472.0
50 TraesCS3B01G336700 chr1A 89.032 155 16 1 3213 3366 387563035 387563189 2.190000e-44 191.0
51 TraesCS3B01G336700 chr1A 86.131 137 15 4 2840 2972 387562895 387563031 1.730000e-30 145.0
52 TraesCS3B01G336700 chr6A 88.387 155 17 1 3213 3366 208513464 208513310 1.020000e-42 185.0
53 TraesCS3B01G336700 chr6A 86.131 137 15 4 2840 2972 208513604 208513468 1.730000e-30 145.0
54 TraesCS3B01G336700 chr7A 92.248 129 9 1 3766 3894 360564158 360564031 1.320000e-41 182.0
55 TraesCS3B01G336700 chr7A 91.473 129 10 1 3766 3894 331645475 331645602 6.120000e-40 176.0
56 TraesCS3B01G336700 chr4A 91.473 129 10 1 3766 3894 181374448 181374321 6.120000e-40 176.0
57 TraesCS3B01G336700 chr5A 88.321 137 12 4 2840 2972 264078571 264078707 1.710000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G336700 chr3B 542730503 542736443 5940 False 10972.000000 10972 100.0000 1 5941 1 chr3B.!!$F2 5940
1 TraesCS3B01G336700 chr3D 416210443 416215602 5159 False 2454.333333 5648 92.5680 463 5487 3 chr3D.!!$F3 5024
2 TraesCS3B01G336700 chr3D 416193710 416199553 5843 False 229.250000 331 89.0335 28 1085 4 chr3D.!!$F2 1057
3 TraesCS3B01G336700 chr3A 534179458 534185626 6168 True 1490.200000 2878 93.9688 456 5487 5 chr3A.!!$R2 5031
4 TraesCS3B01G336700 chr7D 6438561 6442865 4304 False 859.300000 2521 89.4800 28 4606 6 chr7D.!!$F1 4578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.320421 AACACTTAGACGCGGTGCAT 60.320 50.000 12.47 0.00 34.70 3.96 F
927 2818 0.474660 GGCCAGTCCATATCCCCTCT 60.475 60.000 0.00 0.00 34.01 3.69 F
1983 4738 1.202964 TCCAGTTCGACAGAGTGGGTA 60.203 52.381 9.14 0.00 34.67 3.69 F
2495 5527 0.950836 TGAGTTGTGTCAATTGCCCG 59.049 50.000 0.00 0.00 0.00 6.13 F
2758 5790 0.981183 ACTTGCGGACCATGGAACTA 59.019 50.000 21.47 0.55 0.00 2.24 F
4551 8642 0.327867 TCCTGGGGGCTCATCAGAAT 60.328 55.000 7.64 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 4717 0.038159 CCCACTCTGTCGAACTGGAC 60.038 60.000 0.00 0.0 37.45 4.02 R
2209 4985 1.067199 GCAGAAATTGCGGCTTCGTG 61.067 55.000 0.64 0.0 44.09 4.35 R
3352 6389 1.063717 TGGAAATGAGAGGCCCCATTC 60.064 52.381 13.80 0.0 32.36 2.67 R
3654 6707 3.350219 TGACCTGATTTCCCAGCTTAC 57.650 47.619 0.00 0.0 32.97 2.34 R
4742 8833 1.555075 TCAGTATTCACCACCAGCTCC 59.445 52.381 0.00 0.0 0.00 4.70 R
5877 10210 0.036388 GGGAGAGAAATGCGTCCACA 60.036 55.000 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.684001 CGGAGCAACAGGTGGTATAA 57.316 50.000 0.00 0.00 38.34 0.98
43 44 0.742990 TAAATCGGCTGGCCAACTCG 60.743 55.000 7.01 11.31 35.37 4.18
90 91 5.794650 CAAATCATTGCGTATGTGCATAC 57.205 39.130 11.23 11.23 45.78 2.39
130 131 2.741122 TTTTTGCGTGTCTGTTACGG 57.259 45.000 0.00 0.00 41.56 4.02
131 132 1.937278 TTTTGCGTGTCTGTTACGGA 58.063 45.000 0.00 0.00 41.56 4.69
132 133 1.493772 TTTGCGTGTCTGTTACGGAG 58.506 50.000 0.00 0.00 42.57 4.63
133 134 0.386476 TTGCGTGTCTGTTACGGAGT 59.614 50.000 0.00 0.00 42.57 3.85
134 135 1.237533 TGCGTGTCTGTTACGGAGTA 58.762 50.000 0.00 0.00 45.11 2.59
135 136 1.069022 TGCGTGTCTGTTACGGAGTAC 60.069 52.381 0.00 0.00 45.76 2.73
136 137 1.198637 GCGTGTCTGTTACGGAGTACT 59.801 52.381 0.00 0.00 45.76 2.73
137 138 2.847901 CGTGTCTGTTACGGAGTACTG 58.152 52.381 0.00 0.00 45.76 2.74
138 139 2.225019 CGTGTCTGTTACGGAGTACTGT 59.775 50.000 0.00 0.00 45.76 3.55
139 140 3.433274 CGTGTCTGTTACGGAGTACTGTA 59.567 47.826 0.00 0.00 45.76 2.74
155 156 6.974965 AGTACTGTACTACCGGCAAATATAC 58.025 40.000 18.42 0.00 37.23 1.47
156 157 6.774656 AGTACTGTACTACCGGCAAATATACT 59.225 38.462 18.42 0.00 37.23 2.12
158 159 5.010415 ACTGTACTACCGGCAAATATACTCC 59.990 44.000 0.00 0.00 0.00 3.85
159 160 4.281688 TGTACTACCGGCAAATATACTCCC 59.718 45.833 0.00 0.00 0.00 4.30
160 161 3.584294 ACTACCGGCAAATATACTCCCT 58.416 45.455 0.00 0.00 0.00 4.20
161 162 3.577415 ACTACCGGCAAATATACTCCCTC 59.423 47.826 0.00 0.00 0.00 4.30
162 163 1.697982 ACCGGCAAATATACTCCCTCC 59.302 52.381 0.00 0.00 0.00 4.30
163 164 1.337823 CCGGCAAATATACTCCCTCCG 60.338 57.143 0.00 0.00 35.80 4.63
164 165 1.343465 CGGCAAATATACTCCCTCCGT 59.657 52.381 0.00 0.00 0.00 4.69
165 166 2.609737 CGGCAAATATACTCCCTCCGTC 60.610 54.545 0.00 0.00 0.00 4.79
168 169 4.082136 GGCAAATATACTCCCTCCGTCTAG 60.082 50.000 0.00 0.00 0.00 2.43
169 170 4.082136 GCAAATATACTCCCTCCGTCTAGG 60.082 50.000 0.00 0.00 42.97 3.02
170 171 5.078256 CAAATATACTCCCTCCGTCTAGGT 58.922 45.833 0.00 0.00 41.99 3.08
173 174 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
174 175 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
175 176 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
176 177 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
177 178 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
178 179 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
179 180 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
180 181 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
181 182 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
182 183 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
183 184 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
184 185 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
185 186 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
186 187 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
187 188 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
202 203 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
203 204 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
204 205 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
205 206 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
206 207 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
207 208 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
208 209 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
209 210 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
210 211 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
211 212 6.704050 CGAAAACCAAATAATCCCAAAACACT 59.296 34.615 0.00 0.00 0.00 3.55
212 213 7.225734 CGAAAACCAAATAATCCCAAAACACTT 59.774 33.333 0.00 0.00 0.00 3.16
213 214 9.549078 GAAAACCAAATAATCCCAAAACACTTA 57.451 29.630 0.00 0.00 0.00 2.24
214 215 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
215 216 8.485578 AACCAAATAATCCCAAAACACTTAGA 57.514 30.769 0.00 0.00 0.00 2.10
216 217 7.892609 ACCAAATAATCCCAAAACACTTAGAC 58.107 34.615 0.00 0.00 0.00 2.59
217 218 7.027161 CCAAATAATCCCAAAACACTTAGACG 58.973 38.462 0.00 0.00 0.00 4.18
218 219 5.813080 ATAATCCCAAAACACTTAGACGC 57.187 39.130 0.00 0.00 0.00 5.19
219 220 1.504359 TCCCAAAACACTTAGACGCG 58.496 50.000 3.53 3.53 0.00 6.01
220 221 0.515564 CCCAAAACACTTAGACGCGG 59.484 55.000 12.47 0.00 0.00 6.46
221 222 1.223187 CCAAAACACTTAGACGCGGT 58.777 50.000 12.47 0.00 0.00 5.68
222 223 1.070175 CCAAAACACTTAGACGCGGTG 60.070 52.381 12.47 11.18 37.05 4.94
223 224 0.584876 AAAACACTTAGACGCGGTGC 59.415 50.000 12.47 0.00 34.70 5.01
224 225 0.531090 AAACACTTAGACGCGGTGCA 60.531 50.000 12.47 0.00 34.70 4.57
225 226 0.320421 AACACTTAGACGCGGTGCAT 60.320 50.000 12.47 0.00 34.70 3.96
226 227 0.320421 ACACTTAGACGCGGTGCATT 60.320 50.000 12.47 0.00 34.70 3.56
227 228 1.067425 ACACTTAGACGCGGTGCATTA 60.067 47.619 12.47 0.00 34.70 1.90
228 229 1.996898 CACTTAGACGCGGTGCATTAA 59.003 47.619 12.47 0.00 0.00 1.40
229 230 2.413796 CACTTAGACGCGGTGCATTAAA 59.586 45.455 12.47 0.00 0.00 1.52
230 231 3.063452 CACTTAGACGCGGTGCATTAAAT 59.937 43.478 12.47 0.00 0.00 1.40
231 232 3.687698 ACTTAGACGCGGTGCATTAAATT 59.312 39.130 12.47 0.00 0.00 1.82
232 233 2.825086 AGACGCGGTGCATTAAATTC 57.175 45.000 12.47 0.00 0.00 2.17
233 234 2.356135 AGACGCGGTGCATTAAATTCT 58.644 42.857 12.47 0.00 0.00 2.40
234 235 3.527533 AGACGCGGTGCATTAAATTCTA 58.472 40.909 12.47 0.00 0.00 2.10
235 236 4.127171 AGACGCGGTGCATTAAATTCTAT 58.873 39.130 12.47 0.00 0.00 1.98
236 237 4.211374 AGACGCGGTGCATTAAATTCTATC 59.789 41.667 12.47 0.00 0.00 2.08
237 238 4.127171 ACGCGGTGCATTAAATTCTATCT 58.873 39.130 12.47 0.00 0.00 1.98
238 239 4.211374 ACGCGGTGCATTAAATTCTATCTC 59.789 41.667 12.47 0.00 0.00 2.75
239 240 4.211164 CGCGGTGCATTAAATTCTATCTCA 59.789 41.667 0.00 0.00 0.00 3.27
240 241 5.106948 CGCGGTGCATTAAATTCTATCTCAT 60.107 40.000 0.00 0.00 0.00 2.90
241 242 6.566564 CGCGGTGCATTAAATTCTATCTCATT 60.567 38.462 0.00 0.00 0.00 2.57
242 243 7.141363 GCGGTGCATTAAATTCTATCTCATTT 58.859 34.615 0.00 0.00 0.00 2.32
243 244 7.649306 GCGGTGCATTAAATTCTATCTCATTTT 59.351 33.333 0.00 0.00 0.00 1.82
244 245 9.520204 CGGTGCATTAAATTCTATCTCATTTTT 57.480 29.630 0.00 0.00 0.00 1.94
267 268 9.829507 TTTTTGTTTCTTGACATATCAACCAAT 57.170 25.926 0.00 0.00 40.01 3.16
271 272 9.513906 TGTTTCTTGACATATCAACCAATAAGA 57.486 29.630 0.00 0.00 40.01 2.10
272 273 9.994432 GTTTCTTGACATATCAACCAATAAGAG 57.006 33.333 0.00 0.00 40.01 2.85
273 274 9.958180 TTTCTTGACATATCAACCAATAAGAGA 57.042 29.630 0.00 0.00 40.01 3.10
274 275 9.958180 TTCTTGACATATCAACCAATAAGAGAA 57.042 29.630 0.00 0.00 40.01 2.87
275 276 9.605275 TCTTGACATATCAACCAATAAGAGAAG 57.395 33.333 0.00 0.00 40.01 2.85
276 277 9.388506 CTTGACATATCAACCAATAAGAGAAGT 57.611 33.333 0.00 0.00 40.01 3.01
280 281 9.838339 ACATATCAACCAATAAGAGAAGTAAGG 57.162 33.333 0.00 0.00 0.00 2.69
281 282 9.838339 CATATCAACCAATAAGAGAAGTAAGGT 57.162 33.333 0.00 0.00 0.00 3.50
282 283 9.838339 ATATCAACCAATAAGAGAAGTAAGGTG 57.162 33.333 0.00 0.00 0.00 4.00
283 284 7.074653 TCAACCAATAAGAGAAGTAAGGTGT 57.925 36.000 0.00 0.00 0.00 4.16
284 285 6.934645 TCAACCAATAAGAGAAGTAAGGTGTG 59.065 38.462 0.00 0.00 0.00 3.82
285 286 5.246307 ACCAATAAGAGAAGTAAGGTGTGC 58.754 41.667 0.00 0.00 0.00 4.57
286 287 5.221843 ACCAATAAGAGAAGTAAGGTGTGCA 60.222 40.000 0.00 0.00 0.00 4.57
287 288 5.882557 CCAATAAGAGAAGTAAGGTGTGCAT 59.117 40.000 0.00 0.00 0.00 3.96
288 289 6.183360 CCAATAAGAGAAGTAAGGTGTGCATG 60.183 42.308 0.00 0.00 0.00 4.06
289 290 2.704572 AGAGAAGTAAGGTGTGCATGC 58.295 47.619 11.82 11.82 0.00 4.06
290 291 2.304180 AGAGAAGTAAGGTGTGCATGCT 59.696 45.455 20.33 0.00 0.00 3.79
291 292 3.077359 GAGAAGTAAGGTGTGCATGCTT 58.923 45.455 20.33 6.81 0.00 3.91
292 293 3.490348 AGAAGTAAGGTGTGCATGCTTT 58.510 40.909 20.33 8.03 0.00 3.51
293 294 3.891366 AGAAGTAAGGTGTGCATGCTTTT 59.109 39.130 20.33 8.36 0.00 2.27
294 295 5.070001 AGAAGTAAGGTGTGCATGCTTTTA 58.930 37.500 20.33 7.42 0.00 1.52
295 296 5.534654 AGAAGTAAGGTGTGCATGCTTTTAA 59.465 36.000 20.33 0.00 0.00 1.52
296 297 5.982890 AGTAAGGTGTGCATGCTTTTAAT 57.017 34.783 20.33 6.78 0.00 1.40
297 298 7.393234 AGAAGTAAGGTGTGCATGCTTTTAATA 59.607 33.333 20.33 3.11 0.00 0.98
298 299 7.461182 AGTAAGGTGTGCATGCTTTTAATAA 57.539 32.000 20.33 0.00 0.00 1.40
299 300 7.312899 AGTAAGGTGTGCATGCTTTTAATAAC 58.687 34.615 20.33 6.41 0.00 1.89
300 301 5.982890 AGGTGTGCATGCTTTTAATAACT 57.017 34.783 20.33 0.92 0.00 2.24
301 302 6.345096 AGGTGTGCATGCTTTTAATAACTT 57.655 33.333 20.33 0.00 0.00 2.66
302 303 6.158598 AGGTGTGCATGCTTTTAATAACTTG 58.841 36.000 20.33 0.00 0.00 3.16
303 304 6.015519 AGGTGTGCATGCTTTTAATAACTTGA 60.016 34.615 20.33 0.00 0.00 3.02
304 305 6.308766 GGTGTGCATGCTTTTAATAACTTGAG 59.691 38.462 20.33 0.00 0.00 3.02
305 306 7.083858 GTGTGCATGCTTTTAATAACTTGAGA 58.916 34.615 20.33 0.00 0.00 3.27
306 307 7.061094 GTGTGCATGCTTTTAATAACTTGAGAC 59.939 37.037 20.33 2.56 0.00 3.36
307 308 7.040478 TGTGCATGCTTTTAATAACTTGAGACT 60.040 33.333 20.33 0.00 0.00 3.24
308 309 8.450964 GTGCATGCTTTTAATAACTTGAGACTA 58.549 33.333 20.33 0.00 0.00 2.59
309 310 9.177608 TGCATGCTTTTAATAACTTGAGACTAT 57.822 29.630 20.33 0.00 0.00 2.12
310 311 9.657121 GCATGCTTTTAATAACTTGAGACTATC 57.343 33.333 11.37 0.00 0.00 2.08
323 324 3.926527 TGAGACTATCAAACACGACATGC 59.073 43.478 0.00 0.00 34.02 4.06
324 325 3.925379 AGACTATCAAACACGACATGCA 58.075 40.909 0.00 0.00 0.00 3.96
325 326 3.928992 AGACTATCAAACACGACATGCAG 59.071 43.478 0.00 0.00 0.00 4.41
326 327 3.664107 ACTATCAAACACGACATGCAGT 58.336 40.909 0.00 0.00 0.00 4.40
327 328 2.975410 ATCAAACACGACATGCAGTG 57.025 45.000 16.62 16.62 43.46 3.66
328 329 0.943673 TCAAACACGACATGCAGTGG 59.056 50.000 20.60 7.50 42.25 4.00
329 330 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
330 331 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
331 332 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
332 333 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
333 334 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
334 335 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
335 336 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
336 337 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
337 338 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
338 339 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
339 340 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
340 341 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
342 343 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
343 344 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
344 345 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
345 346 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
346 347 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
347 348 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
404 405 2.951229 TTTTCCTCCTCCTTGGTCAC 57.049 50.000 0.00 0.00 37.07 3.67
405 406 0.685097 TTTCCTCCTCCTTGGTCACG 59.315 55.000 0.00 0.00 37.07 4.35
406 407 1.192146 TTCCTCCTCCTTGGTCACGG 61.192 60.000 0.00 0.00 37.07 4.94
407 408 1.913762 CCTCCTCCTTGGTCACGGT 60.914 63.158 0.00 0.00 37.07 4.83
408 409 1.293498 CTCCTCCTTGGTCACGGTG 59.707 63.158 0.56 0.56 37.07 4.94
409 410 2.358737 CCTCCTTGGTCACGGTGC 60.359 66.667 2.51 0.00 0.00 5.01
410 411 2.425592 CTCCTTGGTCACGGTGCA 59.574 61.111 2.51 0.00 0.00 4.57
411 412 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
412 413 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
413 414 1.821759 CCTTGGTCACGGTGCACAA 60.822 57.895 20.43 9.76 0.00 3.33
414 415 1.355210 CTTGGTCACGGTGCACAAC 59.645 57.895 20.43 10.47 0.00 3.32
415 416 2.058829 CTTGGTCACGGTGCACAACC 62.059 60.000 20.43 18.91 46.60 3.77
426 427 4.584327 GGTGCACAACCTAAAATGACTT 57.416 40.909 20.43 0.00 46.55 3.01
427 428 5.699097 GGTGCACAACCTAAAATGACTTA 57.301 39.130 20.43 0.00 46.55 2.24
428 429 5.458015 GGTGCACAACCTAAAATGACTTAC 58.542 41.667 20.43 0.00 46.55 2.34
429 430 5.240844 GGTGCACAACCTAAAATGACTTACT 59.759 40.000 20.43 0.00 46.55 2.24
430 431 6.371389 GTGCACAACCTAAAATGACTTACTC 58.629 40.000 13.17 0.00 0.00 2.59
431 432 6.017440 GTGCACAACCTAAAATGACTTACTCA 60.017 38.462 13.17 0.00 0.00 3.41
432 433 6.017440 TGCACAACCTAAAATGACTTACTCAC 60.017 38.462 0.00 0.00 0.00 3.51
433 434 6.567891 GCACAACCTAAAATGACTTACTCACC 60.568 42.308 0.00 0.00 0.00 4.02
434 435 6.710744 CACAACCTAAAATGACTTACTCACCT 59.289 38.462 0.00 0.00 0.00 4.00
435 436 7.876068 CACAACCTAAAATGACTTACTCACCTA 59.124 37.037 0.00 0.00 0.00 3.08
436 437 8.095169 ACAACCTAAAATGACTTACTCACCTAG 58.905 37.037 0.00 0.00 0.00 3.02
437 438 8.311836 CAACCTAAAATGACTTACTCACCTAGA 58.688 37.037 0.00 0.00 0.00 2.43
438 439 7.838884 ACCTAAAATGACTTACTCACCTAGAC 58.161 38.462 0.00 0.00 0.00 2.59
439 440 6.973474 CCTAAAATGACTTACTCACCTAGACG 59.027 42.308 0.00 0.00 0.00 4.18
440 441 4.985538 AATGACTTACTCACCTAGACGG 57.014 45.455 0.00 0.00 39.35 4.79
441 442 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
442 443 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
443 444 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
444 445 2.575279 ACTTACTCACCTAGACGGAGGA 59.425 50.000 7.23 0.00 39.15 3.71
445 446 3.009916 ACTTACTCACCTAGACGGAGGAA 59.990 47.826 7.23 0.00 39.15 3.36
446 447 2.131776 ACTCACCTAGACGGAGGAAG 57.868 55.000 7.23 6.60 39.15 3.46
447 448 1.355043 ACTCACCTAGACGGAGGAAGT 59.645 52.381 7.23 7.11 39.15 3.01
448 449 2.575279 ACTCACCTAGACGGAGGAAGTA 59.425 50.000 7.23 0.00 39.15 2.24
449 450 2.944349 CTCACCTAGACGGAGGAAGTAC 59.056 54.545 7.23 0.00 39.15 2.73
450 451 2.306805 TCACCTAGACGGAGGAAGTACA 59.693 50.000 7.23 0.00 39.15 2.90
451 452 3.087031 CACCTAGACGGAGGAAGTACAA 58.913 50.000 7.23 0.00 39.15 2.41
452 453 3.700038 CACCTAGACGGAGGAAGTACAAT 59.300 47.826 7.23 0.00 39.15 2.71
453 454 4.885907 CACCTAGACGGAGGAAGTACAATA 59.114 45.833 7.23 0.00 39.15 1.90
454 455 5.008811 CACCTAGACGGAGGAAGTACAATAG 59.991 48.000 7.23 0.00 39.15 1.73
500 501 1.375396 AGCGCACGTAAGCCATTGA 60.375 52.632 11.47 0.00 45.62 2.57
503 506 1.602191 CGCACGTAAGCCATTGAAAC 58.398 50.000 0.00 0.00 45.62 2.78
550 565 3.260884 GTCCAGTAAACCATGTCTCCTGA 59.739 47.826 0.00 0.00 0.00 3.86
576 597 5.966742 AGCTACCATCACTTTTCCTTTTC 57.033 39.130 0.00 0.00 0.00 2.29
582 611 9.546428 CTACCATCACTTTTCCTTTTCATTTTT 57.454 29.630 0.00 0.00 0.00 1.94
673 784 1.737236 CACGGACACACCACCATTATG 59.263 52.381 0.00 0.00 38.90 1.90
686 802 7.147689 ACACCACCATTATGCATTTACATCATT 60.148 33.333 3.54 0.00 0.00 2.57
724 845 2.609350 GGACGGAAGCGTTAACATACA 58.391 47.619 6.39 0.00 0.00 2.29
749 870 1.004560 TGGACTTTGGAGCAGAGCG 60.005 57.895 0.00 0.00 0.00 5.03
750 871 1.743252 GGACTTTGGAGCAGAGCGG 60.743 63.158 0.00 0.00 0.00 5.52
751 872 1.293498 GACTTTGGAGCAGAGCGGA 59.707 57.895 0.00 0.00 0.00 5.54
752 873 0.739112 GACTTTGGAGCAGAGCGGAG 60.739 60.000 0.00 0.00 0.00 4.63
795 921 5.989168 GGGGTCAACTTTGAAAATTAACCTG 59.011 40.000 0.00 0.00 39.21 4.00
926 2817 1.831652 CGGCCAGTCCATATCCCCTC 61.832 65.000 2.24 0.00 34.01 4.30
927 2818 0.474660 GGCCAGTCCATATCCCCTCT 60.475 60.000 0.00 0.00 34.01 3.69
1077 2981 4.477975 GACGACCACTCCGAGGCG 62.478 72.222 0.00 1.04 33.79 5.52
1191 3095 1.747367 CTCCGAGCTGACCGAGTCT 60.747 63.158 0.00 0.00 33.15 3.24
1673 4149 4.584325 ACTTTGCACTTGTGTGGTTATGAT 59.416 37.500 2.61 0.00 43.97 2.45
1677 4158 4.096231 TGCACTTGTGTGGTTATGATATGC 59.904 41.667 2.61 0.00 43.97 3.14
1796 4280 2.403252 ACTGCCTATGCTGTGGTTAC 57.597 50.000 1.82 0.00 46.43 2.50
1833 4317 1.833630 CTAAGTGTGGAGGCATGAGGA 59.166 52.381 0.00 0.00 0.00 3.71
1962 4717 4.571984 TCCGTCTGATTACATTTGCTGATG 59.428 41.667 0.00 0.00 0.00 3.07
1983 4738 1.202964 TCCAGTTCGACAGAGTGGGTA 60.203 52.381 9.14 0.00 34.67 3.69
2077 4848 7.981102 AATTAGTGAGGAAGTTTTGGAGTAC 57.019 36.000 0.00 0.00 0.00 2.73
2138 4914 2.698274 TGTAGTGTGTTCCAGCTCTCAA 59.302 45.455 0.00 0.00 0.00 3.02
2274 5050 6.116126 GCCATTTACTGATCTACAAGACCTT 58.884 40.000 0.00 0.00 0.00 3.50
2495 5527 0.950836 TGAGTTGTGTCAATTGCCCG 59.049 50.000 0.00 0.00 0.00 6.13
2504 5536 1.080569 CAATTGCCCGCACACCTTC 60.081 57.895 0.00 0.00 0.00 3.46
2505 5537 1.530419 AATTGCCCGCACACCTTCA 60.530 52.632 0.00 0.00 0.00 3.02
2518 5550 5.334802 CGCACACCTTCAATCAAATAACTCA 60.335 40.000 0.00 0.00 0.00 3.41
2565 5597 9.522804 CTGCTTTCTATACTTAGTGGAAGTTAG 57.477 37.037 0.00 0.00 46.79 2.34
2652 5684 8.984891 TCAAGTACATTTATCCAGCAATTTTG 57.015 30.769 0.00 0.00 0.00 2.44
2758 5790 0.981183 ACTTGCGGACCATGGAACTA 59.019 50.000 21.47 0.55 0.00 2.24
2760 5792 2.769663 ACTTGCGGACCATGGAACTATA 59.230 45.455 21.47 0.00 0.00 1.31
2794 5826 3.550820 TCTTCTTTGCACTAACTTGGCA 58.449 40.909 0.00 0.00 35.41 4.92
2893 5928 6.471233 TCTCTTCATTATGTGGGAGTAGTG 57.529 41.667 0.00 0.00 33.25 2.74
3127 6164 5.012239 AGTGAAGCATGCTTTTGGAAGATA 58.988 37.500 32.36 9.21 36.26 1.98
3212 6249 3.579151 AGTACACTCCCTTCTCTTTGTCC 59.421 47.826 0.00 0.00 0.00 4.02
3352 6389 4.822036 TGATTGTGTTTACCTGTTTCCG 57.178 40.909 0.00 0.00 0.00 4.30
3393 6432 6.361433 TCCAAATTCACCTGTTAAGAGTCAA 58.639 36.000 0.00 0.00 0.00 3.18
3589 6640 6.896860 TGTATGGAATTGGATCTGGATTGTTT 59.103 34.615 0.00 0.00 0.00 2.83
3617 6670 6.211384 CCATAGTTGAAAAAGGGATTGAACCT 59.789 38.462 0.00 0.00 40.96 3.50
3654 6707 1.190323 GCGAGACTTGTCTGAAACGTG 59.810 52.381 8.11 0.00 0.00 4.49
3674 6727 2.642311 TGTAAGCTGGGAAATCAGGTCA 59.358 45.455 0.00 0.00 43.67 4.02
3721 6807 9.474920 CCAGCTTCAGAATATCTAGAACTTAAG 57.525 37.037 0.00 0.00 0.00 1.85
3819 6906 4.165758 TCCACCATGTACCATCATCATTGA 59.834 41.667 0.00 0.00 36.00 2.57
3832 6920 6.387465 CATCATCATTGAAACAGTCTTGCTT 58.613 36.000 0.00 0.00 34.96 3.91
3933 7166 9.142014 AGTGGCATCTAACTATATATGATCTCC 57.858 37.037 0.00 0.00 0.00 3.71
4048 7282 8.604035 CAAGTTGAATATACTCAGCGTTGTTAT 58.396 33.333 0.00 0.75 32.30 1.89
4078 7312 5.047021 TCAACATTCTTGTGGTGGAAACAAA 60.047 36.000 0.00 0.00 38.06 2.83
4256 7493 9.537852 AGTATGCATATAATCCATGGACAATTT 57.462 29.630 18.99 10.21 0.00 1.82
4257 7494 9.793252 GTATGCATATAATCCATGGACAATTTC 57.207 33.333 18.99 4.69 0.00 2.17
4336 7575 7.707893 TCATATTATGATGTCATCGGTAGCATG 59.292 37.037 8.29 7.34 37.76 4.06
4344 7583 6.496338 TGTCATCGGTAGCATGTATACTAG 57.504 41.667 4.17 0.00 0.00 2.57
4365 8452 7.057894 ACTAGGGAAACTTACATTGACAACAA 58.942 34.615 0.00 0.00 40.42 2.83
4388 8478 8.902806 ACAACAAGAATTAAGAAATGTCAGACA 58.097 29.630 5.50 5.50 0.00 3.41
4415 8505 4.407365 AGTAATGTTGGAAAGGGGTTCTG 58.593 43.478 0.00 0.00 36.40 3.02
4502 8593 4.711355 AGAGAAGAGTTATTGCAGAGCTCT 59.289 41.667 11.45 11.45 38.06 4.09
4520 8611 5.082425 AGCTCTCCAAGGATGAAAAATGTT 58.918 37.500 0.00 0.00 0.00 2.71
4551 8642 0.327867 TCCTGGGGGCTCATCAGAAT 60.328 55.000 7.64 0.00 0.00 2.40
4582 8673 4.162320 TGTTCTATCTACCCAAGCTGAAGG 59.838 45.833 0.00 0.00 0.00 3.46
4626 8717 4.330250 CATCCAAGACAAGAGTGGAATGT 58.670 43.478 0.00 0.00 44.41 2.71
4637 8728 3.072184 AGAGTGGAATGTCTGAAGCAACT 59.928 43.478 0.00 0.00 0.00 3.16
4757 8848 1.280421 GAAGAGGAGCTGGTGGTGAAT 59.720 52.381 0.00 0.00 0.00 2.57
4951 9042 2.378038 TGATGATTAAGGGTTGCCTGC 58.622 47.619 0.00 0.00 0.00 4.85
5007 9100 0.459585 GCGGCTTCAAGACATACGGA 60.460 55.000 0.00 0.00 0.00 4.69
5008 9101 1.806623 GCGGCTTCAAGACATACGGAT 60.807 52.381 0.00 0.00 0.00 4.18
5009 9102 2.545113 GCGGCTTCAAGACATACGGATA 60.545 50.000 0.00 0.00 0.00 2.59
5010 9103 3.050619 CGGCTTCAAGACATACGGATAC 58.949 50.000 0.00 0.00 0.00 2.24
5046 9140 1.102222 AGGATCGTGTCTCCGTAGCC 61.102 60.000 0.00 0.00 37.88 3.93
5062 9156 1.512926 AGCCACTACAAAGCGAACAG 58.487 50.000 0.00 0.00 0.00 3.16
5063 9157 1.070134 AGCCACTACAAAGCGAACAGA 59.930 47.619 0.00 0.00 0.00 3.41
5097 9191 7.328493 CAGAATCACGACAAGTTGATAAGTGTA 59.672 37.037 10.54 5.11 0.00 2.90
5104 9198 7.030165 CGACAAGTTGATAAGTGTATGTCTCT 58.970 38.462 10.54 0.00 35.10 3.10
5109 9203 3.388024 TGATAAGTGTATGTCTCTGGGGC 59.612 47.826 0.00 0.00 0.00 5.80
5120 9214 0.886563 CTCTGGGGCTTTGCTTTCTG 59.113 55.000 0.00 0.00 0.00 3.02
5132 9226 5.376854 TTTGCTTTCTGGATTCTAGTTGC 57.623 39.130 0.00 1.89 0.00 4.17
5173 9267 5.288712 CGTCATGGTCTGTACATAGAAACAC 59.711 44.000 0.00 0.00 0.00 3.32
5180 9274 4.703575 TCTGTACATAGAAACACTAGCCGT 59.296 41.667 0.00 0.00 34.35 5.68
5188 9282 3.777925 CACTAGCCGTGCGTGTGC 61.778 66.667 0.00 0.00 43.20 4.57
5200 9294 1.491563 CGTGTGCAACTACCGCTTC 59.508 57.895 0.00 0.00 38.04 3.86
5236 9330 8.309656 TCGATGCAAGATTCTGAATGTAGATAT 58.690 33.333 7.78 0.00 0.00 1.63
5239 9333 8.828688 TGCAAGATTCTGAATGTAGATATCAG 57.171 34.615 7.78 0.00 41.49 2.90
5274 9591 2.487406 GTGAACGCACAATACGACAG 57.513 50.000 0.00 0.00 44.51 3.51
5276 9593 1.000052 TGAACGCACAATACGACAGGA 60.000 47.619 0.00 0.00 0.00 3.86
5303 9620 4.308899 AGCTGTCAGATATCGTGTAACC 57.691 45.455 3.32 0.00 0.00 2.85
5305 9622 3.488721 GCTGTCAGATATCGTGTAACCGT 60.489 47.826 3.32 0.00 0.00 4.83
5318 9635 4.503734 CGTGTAACCGTTCAAGTTCAAGTA 59.496 41.667 0.00 0.00 0.00 2.24
5350 9668 8.702438 CGTTTTGTTTCCGTATTCTACTTCTTA 58.298 33.333 0.00 0.00 0.00 2.10
5358 9676 7.769220 TCCGTATTCTACTTCTTAGAGTTTGG 58.231 38.462 0.00 0.00 38.12 3.28
5366 9684 1.279271 TCTTAGAGTTTGGGGAGCAGC 59.721 52.381 0.00 0.00 0.00 5.25
5392 9710 5.163301 TGCTTTTTACTCTCCAGACAGACTT 60.163 40.000 0.00 0.00 0.00 3.01
5477 9810 1.154150 GTTGCTCGCATTCCTGTGC 60.154 57.895 0.00 0.00 41.65 4.57
5487 9820 3.189287 CGCATTCCTGTGCTTAGAGTTTT 59.811 43.478 0.00 0.00 42.88 2.43
5519 9852 7.927092 AGAAACTGTTTAGAGTTTGTCTAGTCC 59.073 37.037 9.43 0.00 44.46 3.85
5521 9854 7.362802 ACTGTTTAGAGTTTGTCTAGTCCTT 57.637 36.000 0.00 0.00 39.05 3.36
5522 9855 7.210873 ACTGTTTAGAGTTTGTCTAGTCCTTG 58.789 38.462 0.00 0.00 39.05 3.61
5523 9856 7.069578 ACTGTTTAGAGTTTGTCTAGTCCTTGA 59.930 37.037 0.00 0.00 39.05 3.02
5524 9857 7.963532 TGTTTAGAGTTTGTCTAGTCCTTGAT 58.036 34.615 0.00 0.00 39.05 2.57
5525 9858 9.085645 TGTTTAGAGTTTGTCTAGTCCTTGATA 57.914 33.333 0.00 0.00 39.05 2.15
5526 9859 9.575783 GTTTAGAGTTTGTCTAGTCCTTGATAG 57.424 37.037 0.00 0.00 39.05 2.08
5527 9860 6.215495 AGAGTTTGTCTAGTCCTTGATAGC 57.785 41.667 0.00 0.00 31.71 2.97
5528 9861 5.128008 AGAGTTTGTCTAGTCCTTGATAGCC 59.872 44.000 0.00 0.00 31.71 3.93
5530 9863 5.105146 AGTTTGTCTAGTCCTTGATAGCCTG 60.105 44.000 0.00 0.00 0.00 4.85
5531 9864 2.695666 TGTCTAGTCCTTGATAGCCTGC 59.304 50.000 0.00 0.00 0.00 4.85
5533 9866 1.000283 CTAGTCCTTGATAGCCTGCGG 60.000 57.143 0.00 0.00 0.00 5.69
5537 9870 1.040646 CCTTGATAGCCTGCGGTCTA 58.959 55.000 0.00 0.00 0.00 2.59
5538 9871 1.412710 CCTTGATAGCCTGCGGTCTAA 59.587 52.381 0.00 0.00 0.00 2.10
5539 9872 2.546795 CCTTGATAGCCTGCGGTCTAAG 60.547 54.545 0.00 0.00 0.00 2.18
5540 9873 2.067365 TGATAGCCTGCGGTCTAAGA 57.933 50.000 0.00 0.00 0.00 2.10
5542 9875 0.676736 ATAGCCTGCGGTCTAAGAGC 59.323 55.000 0.00 0.00 0.00 4.09
5543 9876 0.683179 TAGCCTGCGGTCTAAGAGCA 60.683 55.000 0.00 0.00 39.25 4.26
5544 9877 1.079127 GCCTGCGGTCTAAGAGCAA 60.079 57.895 0.00 0.00 40.63 3.91
5545 9878 1.362406 GCCTGCGGTCTAAGAGCAAC 61.362 60.000 0.00 0.00 40.63 4.17
5546 9879 0.247736 CCTGCGGTCTAAGAGCAACT 59.752 55.000 0.00 0.00 40.63 3.16
5547 9880 1.634702 CTGCGGTCTAAGAGCAACTC 58.365 55.000 0.00 0.00 40.63 3.01
5548 9881 0.966179 TGCGGTCTAAGAGCAACTCA 59.034 50.000 0.00 0.00 38.01 3.41
5551 9884 1.996191 CGGTCTAAGAGCAACTCAAGC 59.004 52.381 0.00 0.00 32.06 4.01
5553 9886 1.996191 GTCTAAGAGCAACTCAAGCCG 59.004 52.381 0.00 0.00 32.06 5.52
5555 9888 1.996191 CTAAGAGCAACTCAAGCCGAC 59.004 52.381 0.00 0.00 32.06 4.79
5556 9889 0.603975 AAGAGCAACTCAAGCCGACC 60.604 55.000 0.00 0.00 32.06 4.79
5557 9890 1.301716 GAGCAACTCAAGCCGACCA 60.302 57.895 0.00 0.00 0.00 4.02
5558 9891 0.884704 GAGCAACTCAAGCCGACCAA 60.885 55.000 0.00 0.00 0.00 3.67
5559 9892 1.166531 AGCAACTCAAGCCGACCAAC 61.167 55.000 0.00 0.00 0.00 3.77
5560 9893 1.569493 CAACTCAAGCCGACCAACG 59.431 57.895 0.00 0.00 42.18 4.10
5561 9894 2.251642 AACTCAAGCCGACCAACGC 61.252 57.895 0.00 0.00 41.07 4.84
5562 9895 2.664851 CTCAAGCCGACCAACGCA 60.665 61.111 0.00 0.00 41.07 5.24
5564 9897 3.276091 CAAGCCGACCAACGCACA 61.276 61.111 0.00 0.00 41.07 4.57
5565 9898 2.281484 AAGCCGACCAACGCACAT 60.281 55.556 0.00 0.00 41.07 3.21
5566 9899 2.325082 AAGCCGACCAACGCACATC 61.325 57.895 0.00 0.00 41.07 3.06
5567 9900 3.047280 GCCGACCAACGCACATCA 61.047 61.111 0.00 0.00 41.07 3.07
5568 9901 2.612567 GCCGACCAACGCACATCAA 61.613 57.895 0.00 0.00 41.07 2.57
5569 9902 1.945522 CCGACCAACGCACATCAAA 59.054 52.632 0.00 0.00 41.07 2.69
5570 9903 0.309302 CCGACCAACGCACATCAAAA 59.691 50.000 0.00 0.00 41.07 2.44
5571 9904 1.394697 CGACCAACGCACATCAAAAC 58.605 50.000 0.00 0.00 34.51 2.43
5574 9907 3.182967 GACCAACGCACATCAAAACAAA 58.817 40.909 0.00 0.00 0.00 2.83
5575 9908 3.589988 ACCAACGCACATCAAAACAAAA 58.410 36.364 0.00 0.00 0.00 2.44
5576 9909 3.997021 ACCAACGCACATCAAAACAAAAA 59.003 34.783 0.00 0.00 0.00 1.94
5600 9933 9.832445 AAAATACTGAGTCTCTTAAACAAGACA 57.168 29.630 12.36 0.00 43.52 3.41
5604 9937 7.731054 ACTGAGTCTCTTAAACAAGACATTCT 58.269 34.615 12.36 0.00 43.52 2.40
5605 9938 8.861086 ACTGAGTCTCTTAAACAAGACATTCTA 58.139 33.333 12.36 0.00 43.52 2.10
5606 9939 9.698309 CTGAGTCTCTTAAACAAGACATTCTAA 57.302 33.333 12.36 0.00 43.52 2.10
5702 10035 8.831715 AAACATAGGTTTTCATTGGAATTCAC 57.168 30.769 7.93 0.00 44.63 3.18
5703 10036 7.781324 ACATAGGTTTTCATTGGAATTCACT 57.219 32.000 7.93 0.00 31.93 3.41
5704 10037 7.830739 ACATAGGTTTTCATTGGAATTCACTC 58.169 34.615 7.93 0.00 31.93 3.51
5705 10038 7.451255 ACATAGGTTTTCATTGGAATTCACTCA 59.549 33.333 7.93 0.00 31.93 3.41
5706 10039 6.729690 AGGTTTTCATTGGAATTCACTCAA 57.270 33.333 7.93 2.98 31.93 3.02
5707 10040 7.307131 AGGTTTTCATTGGAATTCACTCAAT 57.693 32.000 7.93 5.28 31.93 2.57
5708 10041 7.381323 AGGTTTTCATTGGAATTCACTCAATC 58.619 34.615 7.93 0.00 31.93 2.67
5709 10042 7.015487 AGGTTTTCATTGGAATTCACTCAATCA 59.985 33.333 7.93 0.00 31.93 2.57
5710 10043 7.330208 GGTTTTCATTGGAATTCACTCAATCAG 59.670 37.037 7.93 0.00 31.93 2.90
5713 10046 8.634335 TTCATTGGAATTCACTCAATCAGTTA 57.366 30.769 7.93 0.00 30.26 2.24
5714 10047 8.634335 TCATTGGAATTCACTCAATCAGTTAA 57.366 30.769 7.93 0.00 30.26 2.01
5715 10048 9.246670 TCATTGGAATTCACTCAATCAGTTAAT 57.753 29.630 7.93 0.00 31.29 1.40
5716 10049 9.865321 CATTGGAATTCACTCAATCAGTTAATT 57.135 29.630 7.93 0.00 40.29 1.40
5720 10053 9.956720 GGAATTCACTCAATCAGTTAATTATGG 57.043 33.333 7.93 0.00 38.51 2.74
5724 10057 9.513906 TTCACTCAATCAGTTAATTATGGAACA 57.486 29.630 0.00 0.00 36.08 3.18
5725 10058 9.513906 TCACTCAATCAGTTAATTATGGAACAA 57.486 29.630 0.00 0.00 35.26 2.83
5726 10059 9.778993 CACTCAATCAGTTAATTATGGAACAAG 57.221 33.333 0.00 0.00 35.26 3.16
5727 10060 9.739276 ACTCAATCAGTTAATTATGGAACAAGA 57.261 29.630 0.00 0.00 33.80 3.02
5738 10071 3.558931 TGGAACAAGAGAGCTGTTTCA 57.441 42.857 0.00 0.00 31.92 2.69
5739 10072 4.090761 TGGAACAAGAGAGCTGTTTCAT 57.909 40.909 0.00 0.00 31.92 2.57
5740 10073 4.067896 TGGAACAAGAGAGCTGTTTCATC 58.932 43.478 0.00 0.00 31.92 2.92
5741 10074 4.202398 TGGAACAAGAGAGCTGTTTCATCT 60.202 41.667 0.00 0.00 31.92 2.90
5742 10075 4.759183 GGAACAAGAGAGCTGTTTCATCTT 59.241 41.667 0.00 0.00 0.00 2.40
5743 10076 5.240403 GGAACAAGAGAGCTGTTTCATCTTT 59.760 40.000 0.00 0.00 0.00 2.52
5744 10077 5.686159 ACAAGAGAGCTGTTTCATCTTTG 57.314 39.130 0.00 0.00 0.00 2.77
5745 10078 5.128919 ACAAGAGAGCTGTTTCATCTTTGT 58.871 37.500 0.00 0.00 0.00 2.83
5746 10079 5.591877 ACAAGAGAGCTGTTTCATCTTTGTT 59.408 36.000 0.00 0.00 0.00 2.83
5747 10080 6.096001 ACAAGAGAGCTGTTTCATCTTTGTTT 59.904 34.615 0.00 0.00 0.00 2.83
5748 10081 6.705863 AGAGAGCTGTTTCATCTTTGTTTT 57.294 33.333 0.00 0.00 0.00 2.43
5749 10082 7.807977 AGAGAGCTGTTTCATCTTTGTTTTA 57.192 32.000 0.00 0.00 0.00 1.52
5750 10083 8.225603 AGAGAGCTGTTTCATCTTTGTTTTAA 57.774 30.769 0.00 0.00 0.00 1.52
5751 10084 8.686334 AGAGAGCTGTTTCATCTTTGTTTTAAA 58.314 29.630 0.00 0.00 0.00 1.52
5752 10085 8.862550 AGAGCTGTTTCATCTTTGTTTTAAAG 57.137 30.769 0.00 0.00 0.00 1.85
5753 10086 8.686334 AGAGCTGTTTCATCTTTGTTTTAAAGA 58.314 29.630 0.00 4.75 40.17 2.52
5754 10087 9.301153 GAGCTGTTTCATCTTTGTTTTAAAGAA 57.699 29.630 6.23 0.00 39.43 2.52
5755 10088 9.651913 AGCTGTTTCATCTTTGTTTTAAAGAAA 57.348 25.926 6.23 0.31 39.43 2.52
5866 10199 7.555965 ACCTAGTTATTTTATTAACGGTCCGT 58.444 34.615 12.23 12.23 43.97 4.69
5875 10208 2.109593 ACGGTCCGTTTGGTGTCC 59.890 61.111 12.23 0.00 36.35 4.02
5876 10209 2.109387 CGGTCCGTTTGGTGTCCA 59.891 61.111 2.08 0.00 36.30 4.02
5877 10210 1.302192 CGGTCCGTTTGGTGTCCAT 60.302 57.895 2.08 0.00 36.30 3.41
5878 10211 1.573829 CGGTCCGTTTGGTGTCCATG 61.574 60.000 2.08 0.00 36.30 3.66
5879 10212 0.536460 GGTCCGTTTGGTGTCCATGT 60.536 55.000 0.00 0.00 36.30 3.21
5881 10214 0.536233 TCCGTTTGGTGTCCATGTGG 60.536 55.000 0.00 0.00 36.30 4.17
5892 10225 1.737838 TCCATGTGGACGCATTTCTC 58.262 50.000 0.00 0.00 39.78 2.87
5893 10226 1.278985 TCCATGTGGACGCATTTCTCT 59.721 47.619 0.00 0.00 39.78 3.10
5894 10227 1.667724 CCATGTGGACGCATTTCTCTC 59.332 52.381 0.00 0.00 37.39 3.20
5896 10229 0.036388 TGTGGACGCATTTCTCTCCC 60.036 55.000 0.00 0.00 0.00 4.30
5897 10230 0.036388 GTGGACGCATTTCTCTCCCA 60.036 55.000 0.00 0.00 0.00 4.37
5898 10231 0.690192 TGGACGCATTTCTCTCCCAA 59.310 50.000 0.00 0.00 0.00 4.12
5899 10232 1.073125 TGGACGCATTTCTCTCCCAAA 59.927 47.619 0.00 0.00 0.00 3.28
5900 10233 2.290896 TGGACGCATTTCTCTCCCAAAT 60.291 45.455 0.00 0.00 0.00 2.32
5901 10234 2.755103 GGACGCATTTCTCTCCCAAATT 59.245 45.455 0.00 0.00 0.00 1.82
5904 10237 2.925563 CGCATTTCTCTCCCAAATTTGC 59.074 45.455 12.92 0.00 0.00 3.68
5907 10240 4.569564 GCATTTCTCTCCCAAATTTGCATC 59.430 41.667 12.92 0.00 0.00 3.91
5908 10241 4.806640 TTTCTCTCCCAAATTTGCATCC 57.193 40.909 12.92 0.00 0.00 3.51
5909 10242 2.368439 TCTCTCCCAAATTTGCATCCG 58.632 47.619 12.92 0.00 0.00 4.18
5910 10243 1.406539 CTCTCCCAAATTTGCATCCGG 59.593 52.381 12.92 8.23 0.00 5.14
5911 10244 1.185315 CTCCCAAATTTGCATCCGGT 58.815 50.000 12.92 0.00 0.00 5.28
5912 10245 1.550072 CTCCCAAATTTGCATCCGGTT 59.450 47.619 12.92 0.00 0.00 4.44
5913 10246 1.974236 TCCCAAATTTGCATCCGGTTT 59.026 42.857 12.92 0.00 0.00 3.27
5924 10972 2.854424 GCATCCGGTTTGCGTTCATATG 60.854 50.000 14.65 0.00 0.00 1.78
5925 10973 1.374560 TCCGGTTTGCGTTCATATGG 58.625 50.000 0.00 0.00 0.00 2.74
5927 10975 1.063469 CCGGTTTGCGTTCATATGGAC 59.937 52.381 3.81 3.81 0.00 4.02
5928 10976 1.735018 CGGTTTGCGTTCATATGGACA 59.265 47.619 14.59 0.00 0.00 4.02
5929 10977 2.223021 CGGTTTGCGTTCATATGGACAG 60.223 50.000 14.59 8.06 0.00 3.51
5931 10979 3.006940 GTTTGCGTTCATATGGACAGGA 58.993 45.455 14.59 5.64 0.00 3.86
5932 10980 3.342377 TTGCGTTCATATGGACAGGAA 57.658 42.857 14.59 10.94 0.00 3.36
5933 10981 3.342377 TGCGTTCATATGGACAGGAAA 57.658 42.857 14.59 0.00 0.00 3.13
5934 10982 3.006940 TGCGTTCATATGGACAGGAAAC 58.993 45.455 14.59 3.41 0.00 2.78
5937 10985 3.677700 CGTTCATATGGACAGGAAACGGA 60.678 47.826 14.59 0.00 0.00 4.69
5938 10986 4.258543 GTTCATATGGACAGGAAACGGAA 58.741 43.478 9.42 0.00 0.00 4.30
5939 10987 4.561500 TCATATGGACAGGAAACGGAAA 57.438 40.909 2.13 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.227674 CCTGTTGCTCCGCCCTATC 60.228 63.158 0.00 0.00 0.00 2.08
2 3 2.606519 ACCTGTTGCTCCGCCCTA 60.607 61.111 0.00 0.00 0.00 3.53
5 6 2.536997 ATACCACCTGTTGCTCCGCC 62.537 60.000 0.00 0.00 0.00 6.13
6 7 0.177141 TATACCACCTGTTGCTCCGC 59.823 55.000 0.00 0.00 0.00 5.54
7 8 2.684001 TTATACCACCTGTTGCTCCG 57.316 50.000 0.00 0.00 0.00 4.63
8 9 3.560068 CGATTTATACCACCTGTTGCTCC 59.440 47.826 0.00 0.00 0.00 4.70
9 10 3.560068 CCGATTTATACCACCTGTTGCTC 59.440 47.826 0.00 0.00 0.00 4.26
10 11 3.541632 CCGATTTATACCACCTGTTGCT 58.458 45.455 0.00 0.00 0.00 3.91
11 12 2.032924 GCCGATTTATACCACCTGTTGC 59.967 50.000 0.00 0.00 0.00 4.17
12 13 3.312421 CAGCCGATTTATACCACCTGTTG 59.688 47.826 0.00 0.00 0.00 3.33
13 14 3.541632 CAGCCGATTTATACCACCTGTT 58.458 45.455 0.00 0.00 0.00 3.16
14 15 2.158813 CCAGCCGATTTATACCACCTGT 60.159 50.000 0.00 0.00 0.00 4.00
15 16 2.494059 CCAGCCGATTTATACCACCTG 58.506 52.381 0.00 0.00 0.00 4.00
16 17 1.202770 GCCAGCCGATTTATACCACCT 60.203 52.381 0.00 0.00 0.00 4.00
17 18 1.235724 GCCAGCCGATTTATACCACC 58.764 55.000 0.00 0.00 0.00 4.61
18 19 1.235724 GGCCAGCCGATTTATACCAC 58.764 55.000 0.00 0.00 0.00 4.16
19 20 0.840617 TGGCCAGCCGATTTATACCA 59.159 50.000 0.00 0.00 39.42 3.25
20 21 1.607148 GTTGGCCAGCCGATTTATACC 59.393 52.381 8.70 0.00 39.42 2.73
21 22 2.548480 GAGTTGGCCAGCCGATTTATAC 59.452 50.000 16.95 2.02 39.42 1.47
22 23 2.805295 CGAGTTGGCCAGCCGATTTATA 60.805 50.000 16.95 0.00 39.42 0.98
23 24 1.680338 GAGTTGGCCAGCCGATTTAT 58.320 50.000 16.95 0.00 39.42 1.40
24 25 0.742990 CGAGTTGGCCAGCCGATTTA 60.743 55.000 16.95 0.00 39.42 1.40
25 26 2.040544 CGAGTTGGCCAGCCGATTT 61.041 57.895 16.95 0.00 39.42 2.17
26 27 2.436646 CGAGTTGGCCAGCCGATT 60.437 61.111 16.95 0.00 39.42 3.34
68 69 4.676471 GGTATGCACATACGCAATGATTTG 59.324 41.667 13.20 0.00 46.87 2.32
69 70 4.554526 CGGTATGCACATACGCAATGATTT 60.555 41.667 13.20 0.00 46.87 2.17
77 78 0.774098 CGTACGGTATGCACATACGC 59.226 55.000 7.57 6.87 43.43 4.42
78 79 1.776897 CACGTACGGTATGCACATACG 59.223 52.381 21.06 12.69 43.43 3.06
79 80 1.519758 GCACGTACGGTATGCACATAC 59.480 52.381 21.06 11.55 42.15 2.39
80 81 1.134560 TGCACGTACGGTATGCACATA 59.865 47.619 23.22 5.66 44.17 2.29
81 82 0.108567 TGCACGTACGGTATGCACAT 60.109 50.000 23.22 0.00 44.17 3.21
82 83 1.289380 TGCACGTACGGTATGCACA 59.711 52.632 23.22 6.61 44.17 4.57
83 84 4.172346 TGCACGTACGGTATGCAC 57.828 55.556 23.22 5.04 44.17 4.57
85 86 1.003851 AACATGCACGTACGGTATGC 58.996 50.000 23.84 21.79 39.88 3.14
86 87 2.217847 GCTAACATGCACGTACGGTATG 59.782 50.000 21.06 22.26 0.00 2.39
87 88 2.466846 GCTAACATGCACGTACGGTAT 58.533 47.619 21.06 10.53 0.00 2.73
88 89 1.469595 GGCTAACATGCACGTACGGTA 60.470 52.381 21.06 8.55 34.04 4.02
89 90 0.738412 GGCTAACATGCACGTACGGT 60.738 55.000 21.06 4.10 34.04 4.83
90 91 1.748647 CGGCTAACATGCACGTACGG 61.749 60.000 21.06 9.73 34.04 4.02
127 128 2.014068 GCCGGTAGTACAGTACTCCGT 61.014 57.143 29.81 11.20 42.53 4.69
129 130 1.755179 TGCCGGTAGTACAGTACTCC 58.245 55.000 16.91 15.52 40.14 3.85
130 131 3.855689 TTTGCCGGTAGTACAGTACTC 57.144 47.619 16.91 8.72 40.14 2.59
131 132 6.774656 AGTATATTTGCCGGTAGTACAGTACT 59.225 38.462 17.51 17.51 42.68 2.73
132 133 6.974965 AGTATATTTGCCGGTAGTACAGTAC 58.025 40.000 1.90 2.05 0.00 2.73
133 134 6.207417 GGAGTATATTTGCCGGTAGTACAGTA 59.793 42.308 1.90 0.00 0.00 2.74
134 135 5.010415 GGAGTATATTTGCCGGTAGTACAGT 59.990 44.000 1.90 0.00 0.00 3.55
135 136 5.467705 GGAGTATATTTGCCGGTAGTACAG 58.532 45.833 1.90 0.00 0.00 2.74
136 137 4.281688 GGGAGTATATTTGCCGGTAGTACA 59.718 45.833 1.90 0.00 0.00 2.90
137 138 4.525874 AGGGAGTATATTTGCCGGTAGTAC 59.474 45.833 1.90 0.99 0.00 2.73
138 139 4.744237 AGGGAGTATATTTGCCGGTAGTA 58.256 43.478 1.90 0.00 0.00 1.82
139 140 3.577415 GAGGGAGTATATTTGCCGGTAGT 59.423 47.826 1.90 0.00 0.00 2.73
155 156 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
156 157 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
158 159 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
159 160 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
160 161 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
161 162 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
162 163 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
182 183 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
183 184 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
184 185 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
185 186 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
186 187 6.704050 AGTGTTTTGGGATTATTTGGTTTTCG 59.296 34.615 0.00 0.00 0.00 3.46
187 188 8.445275 AAGTGTTTTGGGATTATTTGGTTTTC 57.555 30.769 0.00 0.00 0.00 2.29
188 189 9.554395 CTAAGTGTTTTGGGATTATTTGGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
189 190 8.929487 TCTAAGTGTTTTGGGATTATTTGGTTT 58.071 29.630 0.00 0.00 0.00 3.27
190 191 8.364894 GTCTAAGTGTTTTGGGATTATTTGGTT 58.635 33.333 0.00 0.00 0.00 3.67
191 192 7.308951 CGTCTAAGTGTTTTGGGATTATTTGGT 60.309 37.037 0.00 0.00 0.00 3.67
192 193 7.027161 CGTCTAAGTGTTTTGGGATTATTTGG 58.973 38.462 0.00 0.00 0.00 3.28
193 194 6.526674 GCGTCTAAGTGTTTTGGGATTATTTG 59.473 38.462 0.00 0.00 0.00 2.32
194 195 6.617879 GCGTCTAAGTGTTTTGGGATTATTT 58.382 36.000 0.00 0.00 0.00 1.40
195 196 5.163794 CGCGTCTAAGTGTTTTGGGATTATT 60.164 40.000 0.00 0.00 0.00 1.40
196 197 4.331717 CGCGTCTAAGTGTTTTGGGATTAT 59.668 41.667 0.00 0.00 0.00 1.28
197 198 3.680937 CGCGTCTAAGTGTTTTGGGATTA 59.319 43.478 0.00 0.00 0.00 1.75
198 199 2.482721 CGCGTCTAAGTGTTTTGGGATT 59.517 45.455 0.00 0.00 0.00 3.01
199 200 2.073816 CGCGTCTAAGTGTTTTGGGAT 58.926 47.619 0.00 0.00 0.00 3.85
200 201 1.504359 CGCGTCTAAGTGTTTTGGGA 58.496 50.000 0.00 0.00 0.00 4.37
201 202 0.515564 CCGCGTCTAAGTGTTTTGGG 59.484 55.000 4.92 0.00 0.00 4.12
202 203 1.070175 CACCGCGTCTAAGTGTTTTGG 60.070 52.381 4.92 0.00 0.00 3.28
203 204 1.659211 GCACCGCGTCTAAGTGTTTTG 60.659 52.381 4.92 0.00 33.96 2.44
204 205 0.584876 GCACCGCGTCTAAGTGTTTT 59.415 50.000 4.92 0.00 33.96 2.43
205 206 0.531090 TGCACCGCGTCTAAGTGTTT 60.531 50.000 4.92 0.00 33.96 2.83
206 207 0.320421 ATGCACCGCGTCTAAGTGTT 60.320 50.000 4.92 0.00 33.96 3.32
207 208 0.320421 AATGCACCGCGTCTAAGTGT 60.320 50.000 4.92 0.00 33.96 3.55
208 209 1.635844 TAATGCACCGCGTCTAAGTG 58.364 50.000 4.92 6.73 34.58 3.16
209 210 2.373540 TTAATGCACCGCGTCTAAGT 57.626 45.000 4.92 0.00 0.00 2.24
210 211 3.944422 ATTTAATGCACCGCGTCTAAG 57.056 42.857 4.92 0.00 0.00 2.18
211 212 3.936453 AGAATTTAATGCACCGCGTCTAA 59.064 39.130 4.92 0.00 0.00 2.10
212 213 3.527533 AGAATTTAATGCACCGCGTCTA 58.472 40.909 4.92 0.00 0.00 2.59
213 214 2.356135 AGAATTTAATGCACCGCGTCT 58.644 42.857 4.92 0.00 0.00 4.18
214 215 2.825086 AGAATTTAATGCACCGCGTC 57.175 45.000 4.92 0.00 0.00 5.19
215 216 4.127171 AGATAGAATTTAATGCACCGCGT 58.873 39.130 4.92 0.00 0.00 6.01
216 217 4.211164 TGAGATAGAATTTAATGCACCGCG 59.789 41.667 0.00 0.00 0.00 6.46
217 218 5.673337 TGAGATAGAATTTAATGCACCGC 57.327 39.130 0.00 0.00 0.00 5.68
218 219 9.520204 AAAAATGAGATAGAATTTAATGCACCG 57.480 29.630 0.00 0.00 0.00 4.94
241 242 9.829507 ATTGGTTGATATGTCAAGAAACAAAAA 57.170 25.926 4.98 0.00 44.58 1.94
245 246 9.513906 TCTTATTGGTTGATATGTCAAGAAACA 57.486 29.630 4.98 0.63 44.58 2.83
246 247 9.994432 CTCTTATTGGTTGATATGTCAAGAAAC 57.006 33.333 4.98 0.00 44.58 2.78
247 248 9.958180 TCTCTTATTGGTTGATATGTCAAGAAA 57.042 29.630 4.98 3.84 44.58 2.52
248 249 9.958180 TTCTCTTATTGGTTGATATGTCAAGAA 57.042 29.630 4.98 2.47 44.58 2.52
249 250 9.605275 CTTCTCTTATTGGTTGATATGTCAAGA 57.395 33.333 4.98 0.00 44.58 3.02
250 251 9.388506 ACTTCTCTTATTGGTTGATATGTCAAG 57.611 33.333 4.98 0.00 44.58 3.02
254 255 9.838339 CCTTACTTCTCTTATTGGTTGATATGT 57.162 33.333 0.00 0.00 0.00 2.29
255 256 9.838339 ACCTTACTTCTCTTATTGGTTGATATG 57.162 33.333 0.00 0.00 0.00 1.78
256 257 9.838339 CACCTTACTTCTCTTATTGGTTGATAT 57.162 33.333 0.00 0.00 0.00 1.63
257 258 8.822805 ACACCTTACTTCTCTTATTGGTTGATA 58.177 33.333 0.00 0.00 0.00 2.15
258 259 7.607991 CACACCTTACTTCTCTTATTGGTTGAT 59.392 37.037 0.00 0.00 0.00 2.57
259 260 6.934645 CACACCTTACTTCTCTTATTGGTTGA 59.065 38.462 0.00 0.00 0.00 3.18
260 261 6.348540 GCACACCTTACTTCTCTTATTGGTTG 60.349 42.308 0.00 0.00 0.00 3.77
261 262 5.705905 GCACACCTTACTTCTCTTATTGGTT 59.294 40.000 0.00 0.00 0.00 3.67
262 263 5.221843 TGCACACCTTACTTCTCTTATTGGT 60.222 40.000 0.00 0.00 0.00 3.67
263 264 5.245531 TGCACACCTTACTTCTCTTATTGG 58.754 41.667 0.00 0.00 0.00 3.16
264 265 6.676456 GCATGCACACCTTACTTCTCTTATTG 60.676 42.308 14.21 0.00 0.00 1.90
265 266 5.355350 GCATGCACACCTTACTTCTCTTATT 59.645 40.000 14.21 0.00 0.00 1.40
266 267 4.878397 GCATGCACACCTTACTTCTCTTAT 59.122 41.667 14.21 0.00 0.00 1.73
267 268 4.020218 AGCATGCACACCTTACTTCTCTTA 60.020 41.667 21.98 0.00 0.00 2.10
268 269 3.077359 GCATGCACACCTTACTTCTCTT 58.923 45.455 14.21 0.00 0.00 2.85
269 270 2.304180 AGCATGCACACCTTACTTCTCT 59.696 45.455 21.98 0.00 0.00 3.10
270 271 2.704572 AGCATGCACACCTTACTTCTC 58.295 47.619 21.98 0.00 0.00 2.87
271 272 2.867109 AGCATGCACACCTTACTTCT 57.133 45.000 21.98 0.00 0.00 2.85
272 273 3.923017 AAAGCATGCACACCTTACTTC 57.077 42.857 21.98 0.00 0.00 3.01
273 274 5.782893 TTAAAAGCATGCACACCTTACTT 57.217 34.783 21.98 0.00 0.00 2.24
274 275 5.982890 ATTAAAAGCATGCACACCTTACT 57.017 34.783 21.98 1.49 0.00 2.24
275 276 7.312899 AGTTATTAAAAGCATGCACACCTTAC 58.687 34.615 21.98 8.66 0.00 2.34
276 277 7.461182 AGTTATTAAAAGCATGCACACCTTA 57.539 32.000 21.98 6.66 0.00 2.69
277 278 6.345096 AGTTATTAAAAGCATGCACACCTT 57.655 33.333 21.98 1.21 0.00 3.50
278 279 5.982890 AGTTATTAAAAGCATGCACACCT 57.017 34.783 21.98 2.16 0.00 4.00
279 280 6.155827 TCAAGTTATTAAAAGCATGCACACC 58.844 36.000 21.98 0.00 0.00 4.16
280 281 7.061094 GTCTCAAGTTATTAAAAGCATGCACAC 59.939 37.037 21.98 4.15 0.00 3.82
281 282 7.040478 AGTCTCAAGTTATTAAAAGCATGCACA 60.040 33.333 21.98 0.00 0.00 4.57
282 283 7.308435 AGTCTCAAGTTATTAAAAGCATGCAC 58.692 34.615 21.98 6.43 0.00 4.57
283 284 7.452880 AGTCTCAAGTTATTAAAAGCATGCA 57.547 32.000 21.98 0.00 0.00 3.96
284 285 9.657121 GATAGTCTCAAGTTATTAAAAGCATGC 57.343 33.333 10.51 10.51 0.00 4.06
292 293 9.917129 TCGTGTTTGATAGTCTCAAGTTATTAA 57.083 29.630 0.00 0.00 44.48 1.40
293 294 9.350357 GTCGTGTTTGATAGTCTCAAGTTATTA 57.650 33.333 0.00 0.00 44.48 0.98
294 295 7.870954 TGTCGTGTTTGATAGTCTCAAGTTATT 59.129 33.333 0.00 0.00 44.48 1.40
295 296 7.375834 TGTCGTGTTTGATAGTCTCAAGTTAT 58.624 34.615 0.00 0.00 44.48 1.89
296 297 6.741109 TGTCGTGTTTGATAGTCTCAAGTTA 58.259 36.000 0.00 0.00 44.48 2.24
297 298 5.597806 TGTCGTGTTTGATAGTCTCAAGTT 58.402 37.500 0.00 0.00 44.48 2.66
298 299 5.196341 TGTCGTGTTTGATAGTCTCAAGT 57.804 39.130 0.00 0.00 44.48 3.16
299 300 5.445142 GCATGTCGTGTTTGATAGTCTCAAG 60.445 44.000 0.00 0.00 44.48 3.02
300 301 4.388773 GCATGTCGTGTTTGATAGTCTCAA 59.611 41.667 0.00 0.00 42.15 3.02
301 302 3.926527 GCATGTCGTGTTTGATAGTCTCA 59.073 43.478 0.00 0.00 0.00 3.27
302 303 3.926527 TGCATGTCGTGTTTGATAGTCTC 59.073 43.478 0.00 0.00 0.00 3.36
303 304 3.925379 TGCATGTCGTGTTTGATAGTCT 58.075 40.909 0.00 0.00 0.00 3.24
304 305 3.679980 ACTGCATGTCGTGTTTGATAGTC 59.320 43.478 0.00 0.00 0.00 2.59
305 306 3.433274 CACTGCATGTCGTGTTTGATAGT 59.567 43.478 7.95 0.00 0.00 2.12
306 307 3.181517 CCACTGCATGTCGTGTTTGATAG 60.182 47.826 13.12 0.00 0.00 2.08
307 308 2.741517 CCACTGCATGTCGTGTTTGATA 59.258 45.455 13.12 0.00 0.00 2.15
308 309 1.536766 CCACTGCATGTCGTGTTTGAT 59.463 47.619 13.12 0.00 0.00 2.57
309 310 0.943673 CCACTGCATGTCGTGTTTGA 59.056 50.000 13.12 0.00 0.00 2.69
310 311 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
311 312 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
312 313 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
313 314 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
314 315 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
315 316 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
316 317 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
317 318 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
318 319 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
319 320 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
320 321 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
321 322 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
322 323 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
384 385 2.486548 CGTGACCAAGGAGGAGGAAAAA 60.487 50.000 0.00 0.00 41.22 1.94
385 386 1.071699 CGTGACCAAGGAGGAGGAAAA 59.928 52.381 0.00 0.00 41.22 2.29
386 387 0.685097 CGTGACCAAGGAGGAGGAAA 59.315 55.000 0.00 0.00 41.22 3.13
387 388 1.192146 CCGTGACCAAGGAGGAGGAA 61.192 60.000 0.00 0.00 41.22 3.36
388 389 1.609501 CCGTGACCAAGGAGGAGGA 60.610 63.158 0.00 0.00 41.22 3.71
389 390 1.913762 ACCGTGACCAAGGAGGAGG 60.914 63.158 8.91 0.00 41.22 4.30
390 391 1.293498 CACCGTGACCAAGGAGGAG 59.707 63.158 8.91 0.00 41.22 3.69
391 392 2.879233 GCACCGTGACCAAGGAGGA 61.879 63.158 8.91 0.00 41.22 3.71
392 393 2.358737 GCACCGTGACCAAGGAGG 60.359 66.667 8.91 2.33 45.67 4.30
393 394 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
394 395 2.110213 GTGCACCGTGACCAAGGA 59.890 61.111 5.22 0.00 33.97 3.36
395 396 1.821759 TTGTGCACCGTGACCAAGG 60.822 57.895 15.69 0.44 35.99 3.61
396 397 1.355210 GTTGTGCACCGTGACCAAG 59.645 57.895 15.69 0.00 0.00 3.61
397 398 2.115911 GGTTGTGCACCGTGACCAA 61.116 57.895 15.69 1.00 35.12 3.67
398 399 2.515057 GGTTGTGCACCGTGACCA 60.515 61.111 15.69 0.00 35.12 4.02
406 407 6.017440 TGAGTAAGTCATTTTAGGTTGTGCAC 60.017 38.462 10.75 10.75 0.00 4.57
407 408 6.017440 GTGAGTAAGTCATTTTAGGTTGTGCA 60.017 38.462 0.00 0.00 37.56 4.57
408 409 6.371389 GTGAGTAAGTCATTTTAGGTTGTGC 58.629 40.000 0.00 0.00 37.56 4.57
409 410 6.710744 AGGTGAGTAAGTCATTTTAGGTTGTG 59.289 38.462 0.00 0.00 37.56 3.33
410 411 6.838382 AGGTGAGTAAGTCATTTTAGGTTGT 58.162 36.000 0.00 0.00 37.56 3.32
411 412 8.311836 TCTAGGTGAGTAAGTCATTTTAGGTTG 58.688 37.037 0.00 0.00 37.56 3.77
412 413 8.312564 GTCTAGGTGAGTAAGTCATTTTAGGTT 58.687 37.037 0.00 0.00 37.56 3.50
413 414 7.362747 CGTCTAGGTGAGTAAGTCATTTTAGGT 60.363 40.741 0.00 0.00 37.56 3.08
414 415 6.973474 CGTCTAGGTGAGTAAGTCATTTTAGG 59.027 42.308 0.00 0.00 37.56 2.69
415 416 6.973474 CCGTCTAGGTGAGTAAGTCATTTTAG 59.027 42.308 0.00 0.00 37.56 1.85
416 417 6.660521 TCCGTCTAGGTGAGTAAGTCATTTTA 59.339 38.462 0.00 0.00 41.99 1.52
417 418 5.479375 TCCGTCTAGGTGAGTAAGTCATTTT 59.521 40.000 0.00 0.00 41.99 1.82
418 419 5.014858 TCCGTCTAGGTGAGTAAGTCATTT 58.985 41.667 0.00 0.00 41.99 2.32
419 420 4.597004 TCCGTCTAGGTGAGTAAGTCATT 58.403 43.478 0.00 0.00 41.99 2.57
420 421 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
421 422 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
422 423 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
423 424 2.575279 TCCTCCGTCTAGGTGAGTAAGT 59.425 50.000 0.00 0.00 41.99 2.24
424 425 3.278668 TCCTCCGTCTAGGTGAGTAAG 57.721 52.381 0.00 0.00 41.99 2.34
425 426 3.009916 ACTTCCTCCGTCTAGGTGAGTAA 59.990 47.826 0.00 0.00 41.99 2.24
426 427 2.575279 ACTTCCTCCGTCTAGGTGAGTA 59.425 50.000 0.00 0.00 41.99 2.59
427 428 1.355043 ACTTCCTCCGTCTAGGTGAGT 59.645 52.381 0.00 0.00 41.99 3.41
428 429 2.131776 ACTTCCTCCGTCTAGGTGAG 57.868 55.000 0.00 0.00 41.99 3.51
429 430 2.306805 TGTACTTCCTCCGTCTAGGTGA 59.693 50.000 0.00 0.00 41.99 4.02
430 431 2.719739 TGTACTTCCTCCGTCTAGGTG 58.280 52.381 0.00 0.00 41.99 4.00
431 432 3.446442 TTGTACTTCCTCCGTCTAGGT 57.554 47.619 0.00 0.00 41.99 3.08
432 433 5.131784 ACTATTGTACTTCCTCCGTCTAGG 58.868 45.833 0.00 0.00 42.97 3.02
433 434 7.798596 TTACTATTGTACTTCCTCCGTCTAG 57.201 40.000 0.00 0.00 0.00 2.43
434 435 8.462016 GTTTTACTATTGTACTTCCTCCGTCTA 58.538 37.037 0.00 0.00 0.00 2.59
435 436 7.178097 AGTTTTACTATTGTACTTCCTCCGTCT 59.822 37.037 0.00 0.00 0.00 4.18
436 437 7.318893 AGTTTTACTATTGTACTTCCTCCGTC 58.681 38.462 0.00 0.00 0.00 4.79
437 438 7.237209 AGTTTTACTATTGTACTTCCTCCGT 57.763 36.000 0.00 0.00 0.00 4.69
438 439 8.543862 AAAGTTTTACTATTGTACTTCCTCCG 57.456 34.615 0.00 0.00 0.00 4.63
448 449 9.946165 GCAACAGTAGAAAAGTTTTACTATTGT 57.054 29.630 17.40 18.20 35.38 2.71
452 453 9.169592 ACAAGCAACAGTAGAAAAGTTTTACTA 57.830 29.630 0.00 2.68 0.00 1.82
453 454 8.051901 ACAAGCAACAGTAGAAAAGTTTTACT 57.948 30.769 0.00 0.00 0.00 2.24
454 455 8.683550 AACAAGCAACAGTAGAAAAGTTTTAC 57.316 30.769 0.00 0.00 0.00 2.01
500 501 3.402628 ACAATAGAGGTCGCTGTGTTT 57.597 42.857 0.00 0.00 0.00 2.83
503 506 2.345641 CGAAACAATAGAGGTCGCTGTG 59.654 50.000 0.00 0.00 0.00 3.66
550 565 3.589288 AGGAAAAGTGATGGTAGCTTCCT 59.411 43.478 11.05 0.00 37.07 3.36
582 611 9.434420 CAAGTGGCCAATCAGAAATTTAATTTA 57.566 29.630 7.24 0.00 31.47 1.40
585 614 5.876460 GCAAGTGGCCAATCAGAAATTTAAT 59.124 36.000 7.24 0.00 36.11 1.40
586 615 5.237048 GCAAGTGGCCAATCAGAAATTTAA 58.763 37.500 7.24 0.00 36.11 1.52
587 616 4.819769 GCAAGTGGCCAATCAGAAATTTA 58.180 39.130 7.24 0.00 36.11 1.40
588 617 3.667360 GCAAGTGGCCAATCAGAAATTT 58.333 40.909 7.24 0.00 36.11 1.82
589 618 3.323751 GCAAGTGGCCAATCAGAAATT 57.676 42.857 7.24 0.00 36.11 1.82
673 784 8.915871 TGCTTTCTTAAGAATGATGTAAATGC 57.084 30.769 26.83 14.06 33.54 3.56
686 802 5.046159 TCCGTCCCTAATTGCTTTCTTAAGA 60.046 40.000 0.00 0.00 32.92 2.10
724 845 1.980765 TGCTCCAAAGTCCACATCTCT 59.019 47.619 0.00 0.00 0.00 3.10
749 870 5.506317 CCCGAGAAACATGAATAATTGCTCC 60.506 44.000 0.00 0.00 0.00 4.70
750 871 5.506317 CCCCGAGAAACATGAATAATTGCTC 60.506 44.000 0.00 0.00 0.00 4.26
751 872 4.339247 CCCCGAGAAACATGAATAATTGCT 59.661 41.667 0.00 0.00 0.00 3.91
752 873 4.097892 ACCCCGAGAAACATGAATAATTGC 59.902 41.667 0.00 0.00 0.00 3.56
753 874 5.356751 TGACCCCGAGAAACATGAATAATTG 59.643 40.000 0.00 0.00 0.00 2.32
877 2765 2.266055 GAGGACCAGTGCTTCGGG 59.734 66.667 0.00 0.00 37.42 5.14
908 2799 0.474660 AGAGGGGATATGGACTGGCC 60.475 60.000 0.00 0.00 37.10 5.36
1059 2960 3.063084 GCCTCGGAGTGGTCGTCT 61.063 66.667 4.02 0.00 44.11 4.18
1191 3095 2.636412 CCAGAAGCGTCGGGTGAGA 61.636 63.158 10.52 0.00 34.62 3.27
1369 3560 4.333095 CATCGAGATGCCACTCCG 57.667 61.111 0.00 0.00 33.83 4.63
1653 4124 5.392919 GCATATCATAACCACACAAGTGCAA 60.393 40.000 0.00 0.00 44.53 4.08
1673 4149 6.370367 AGAGTCTTCTGCTGCACTTGCATA 62.370 45.833 3.96 0.00 40.52 3.14
1677 4158 1.799403 CAGAGTCTTCTGCTGCACTTG 59.201 52.381 0.00 0.00 43.98 3.16
1796 4280 7.201644 CCACACTTAGCAAATACACCATTCTAG 60.202 40.741 0.00 0.00 0.00 2.43
1833 4317 3.370840 TGATTTGGCCTGAAGCTACAT 57.629 42.857 3.32 0.00 43.05 2.29
1942 4697 5.355071 TGGACATCAGCAAATGTAATCAGAC 59.645 40.000 4.18 0.00 39.93 3.51
1962 4717 0.038159 CCCACTCTGTCGAACTGGAC 60.038 60.000 0.00 0.00 37.45 4.02
1983 4738 5.552870 AGACACAGTAACTCATTTCAGGT 57.447 39.130 0.00 0.00 0.00 4.00
2077 4848 8.777413 TCTCTCATTATTAAAATCCGCAATCTG 58.223 33.333 0.00 0.00 0.00 2.90
2138 4914 8.737175 CATAAGCATTTATGAGAAGGTGCATAT 58.263 33.333 0.00 0.00 45.92 1.78
2209 4985 1.067199 GCAGAAATTGCGGCTTCGTG 61.067 55.000 0.64 0.00 44.09 4.35
2233 5009 8.439971 AGTAAATGGCATAGTTAATCCTGATGA 58.560 33.333 0.00 0.00 0.00 2.92
2274 5050 9.167311 GTTTTCTAATTCATCTCTAGCTTTGGA 57.833 33.333 0.00 0.00 0.00 3.53
2495 5527 6.012658 TGAGTTATTTGATTGAAGGTGTGC 57.987 37.500 0.00 0.00 0.00 4.57
2504 5536 8.807667 AGTGCTTCTTTTGAGTTATTTGATTG 57.192 30.769 0.00 0.00 0.00 2.67
2505 5537 9.252962 CAAGTGCTTCTTTTGAGTTATTTGATT 57.747 29.630 0.00 0.00 33.63 2.57
2518 5550 4.096984 CAGTCAAGGTCAAGTGCTTCTTTT 59.903 41.667 0.00 0.00 33.63 2.27
2565 5597 4.248058 CCATGATTCCTTGAAAACAAGCC 58.752 43.478 0.00 0.00 0.00 4.35
2627 5659 8.584157 ACAAAATTGCTGGATAAATGTACTTGA 58.416 29.630 0.00 0.00 0.00 3.02
2758 5790 8.507249 GTGCAAAGAAGAACAGTAGTCAATTAT 58.493 33.333 0.00 0.00 0.00 1.28
2760 5792 6.543831 AGTGCAAAGAAGAACAGTAGTCAATT 59.456 34.615 0.00 0.00 0.00 2.32
2851 5886 6.305272 AGAGAAGGAGAGCATGATGTTAAA 57.695 37.500 0.00 0.00 0.00 1.52
2893 5928 5.002464 AGATGCATGAATGGCAAGTAAAC 57.998 39.130 2.46 0.00 45.60 2.01
3020 6057 3.246699 GCCAATGCATGTTCATATTGTGC 59.753 43.478 0.00 0.00 37.47 4.57
3127 6164 6.865205 GCTTTGAGTGAAGAAGCACAAAATAT 59.135 34.615 2.72 0.00 43.89 1.28
3352 6389 1.063717 TGGAAATGAGAGGCCCCATTC 60.064 52.381 13.80 0.00 32.36 2.67
3393 6432 6.010219 ACCAATACAGCTACAACTCCAAAAT 58.990 36.000 0.00 0.00 0.00 1.82
3589 6640 8.966868 GTTCAATCCCTTTTTCAACTATGGATA 58.033 33.333 0.00 0.00 31.16 2.59
3654 6707 3.350219 TGACCTGATTTCCCAGCTTAC 57.650 47.619 0.00 0.00 32.97 2.34
3674 6727 7.885399 AGCTGGTTTTCAGTACTCAGATAAATT 59.115 33.333 10.35 0.00 45.08 1.82
3933 7166 8.800332 AGCTTGGATATGCATAAAGATTTAAGG 58.200 33.333 17.15 1.68 0.00 2.69
4058 7292 6.015519 TCCTATTTGTTTCCACCACAAGAATG 60.016 38.462 0.00 0.00 35.57 2.67
4078 7312 9.397280 GAAGACCTTAGTTTTAAGCAATCCTAT 57.603 33.333 0.00 0.00 35.88 2.57
4120 7354 8.469309 ACTAGGGAGTACGCTATATTTTACAA 57.531 34.615 0.00 0.00 39.99 2.41
4226 7463 9.045745 TGTCCATGGATTATATGCATACTAGAA 57.954 33.333 19.62 1.79 39.45 2.10
4256 7493 6.325545 ACCATTCTGTAACTATATTGACGGGA 59.674 38.462 0.00 0.00 0.00 5.14
4257 7494 6.423905 CACCATTCTGTAACTATATTGACGGG 59.576 42.308 0.00 0.00 0.00 5.28
4336 7575 9.880157 TTGTCAATGTAAGTTTCCCTAGTATAC 57.120 33.333 0.00 0.00 0.00 1.47
4344 7583 5.897050 TGTTGTTGTCAATGTAAGTTTCCC 58.103 37.500 0.00 0.00 35.92 3.97
4388 8478 6.402981 ACCCCTTTCCAACATTACTAGAAT 57.597 37.500 0.00 0.00 0.00 2.40
4391 8481 5.648092 CAGAACCCCTTTCCAACATTACTAG 59.352 44.000 0.00 0.00 34.32 2.57
4415 8505 6.902341 TGATATTTAGCAAAAGATCATCGCC 58.098 36.000 4.53 0.00 44.38 5.54
4469 8560 5.753721 ATAACTCTTCTCTTGCTTCCAGT 57.246 39.130 0.00 0.00 0.00 4.00
4502 8593 3.320541 ACGCAACATTTTTCATCCTTGGA 59.679 39.130 0.00 0.00 0.00 3.53
4520 8611 2.997315 CCAGGACCCTCAGACGCA 60.997 66.667 0.00 0.00 0.00 5.24
4551 8642 3.199727 TGGGTAGATAGAACATTGCTGCA 59.800 43.478 0.00 0.00 0.00 4.41
4742 8833 1.555075 TCAGTATTCACCACCAGCTCC 59.445 52.381 0.00 0.00 0.00 4.70
4757 8848 4.224147 TCACCCGGATTCTTGATTTCAGTA 59.776 41.667 0.73 0.00 0.00 2.74
4913 9004 0.031314 CATCGTCATCCTCCAGGTCG 59.969 60.000 0.00 0.00 36.34 4.79
4951 9042 2.231478 CACTGGGCTCGGTATATACCAG 59.769 54.545 27.58 22.87 46.80 4.00
5007 9100 2.634982 TCGTTTAACAGCGACCGTAT 57.365 45.000 0.00 0.00 31.76 3.06
5008 9101 2.318578 CTTCGTTTAACAGCGACCGTA 58.681 47.619 0.00 0.00 36.82 4.02
5009 9102 1.134226 CTTCGTTTAACAGCGACCGT 58.866 50.000 0.00 0.00 36.82 4.83
5010 9103 0.437295 CCTTCGTTTAACAGCGACCG 59.563 55.000 0.00 0.00 36.82 4.79
5011 9104 1.787012 TCCTTCGTTTAACAGCGACC 58.213 50.000 0.00 0.00 36.82 4.79
5012 9105 2.027688 CGATCCTTCGTTTAACAGCGAC 59.972 50.000 0.00 0.00 40.53 5.19
5040 9134 1.389106 GTTCGCTTTGTAGTGGCTACG 59.611 52.381 0.00 0.00 39.58 3.51
5046 9140 1.125021 CGCTCTGTTCGCTTTGTAGTG 59.875 52.381 0.00 0.00 0.00 2.74
5062 9156 0.458543 TCGTGATTCTGCTTCCGCTC 60.459 55.000 0.00 0.00 36.97 5.03
5063 9157 0.737715 GTCGTGATTCTGCTTCCGCT 60.738 55.000 0.00 0.00 36.97 5.52
5097 9191 0.407139 AAGCAAAGCCCCAGAGACAT 59.593 50.000 0.00 0.00 0.00 3.06
5104 9198 0.114954 ATCCAGAAAGCAAAGCCCCA 59.885 50.000 0.00 0.00 0.00 4.96
5109 9203 5.048504 TGCAACTAGAATCCAGAAAGCAAAG 60.049 40.000 0.00 0.00 0.00 2.77
5120 9214 5.178809 ACAAGTAAACGTGCAACTAGAATCC 59.821 40.000 0.00 0.00 31.75 3.01
5132 9226 0.653636 ACGGCACACAAGTAAACGTG 59.346 50.000 0.00 0.00 39.10 4.49
5185 9279 1.393883 GCTTAGAAGCGGTAGTTGCAC 59.606 52.381 0.00 0.00 42.88 4.57
5186 9280 1.722011 GCTTAGAAGCGGTAGTTGCA 58.278 50.000 0.00 0.00 42.88 4.08
5200 9294 2.082437 CTTGCATCGACGCGGCTTAG 62.082 60.000 11.76 0.00 33.35 2.18
5211 9305 6.782298 ATCTACATTCAGAATCTTGCATCG 57.218 37.500 0.00 0.00 0.00 3.84
5264 9581 4.929808 ACAGCTTTAGTTCCTGTCGTATTG 59.070 41.667 0.00 0.00 34.99 1.90
5272 9589 5.689514 CGATATCTGACAGCTTTAGTTCCTG 59.310 44.000 0.34 0.00 0.00 3.86
5274 9591 5.460419 CACGATATCTGACAGCTTTAGTTCC 59.540 44.000 0.34 0.00 0.00 3.62
5276 9593 5.967088 ACACGATATCTGACAGCTTTAGTT 58.033 37.500 0.34 0.00 0.00 2.24
5303 9620 5.792631 ACGAGTTTTACTTGAACTTGAACG 58.207 37.500 10.35 3.60 39.73 3.95
5305 9622 8.077386 ACAAAACGAGTTTTACTTGAACTTGAA 58.923 29.630 12.83 0.00 40.45 2.69
5318 9635 6.788243 AGAATACGGAAACAAAACGAGTTTT 58.212 32.000 8.02 8.02 42.91 2.43
5350 9668 1.849823 AGGCTGCTCCCCAAACTCT 60.850 57.895 0.00 0.00 34.51 3.24
5366 9684 3.999663 CTGTCTGGAGAGTAAAAAGCAGG 59.000 47.826 0.00 0.00 0.00 4.85
5392 9710 2.151202 GACGGCCAACTCAGATTTGAA 58.849 47.619 2.24 0.00 31.69 2.69
5487 9820 9.620660 GACAAACTCTAAACAGTTTCTCAAAAA 57.379 29.630 0.48 0.00 43.41 1.94
5496 9829 7.362802 AGGACTAGACAAACTCTAAACAGTT 57.637 36.000 0.00 0.00 38.30 3.16
5498 9831 7.434492 TCAAGGACTAGACAAACTCTAAACAG 58.566 38.462 0.00 0.00 30.58 3.16
5499 9832 7.356089 TCAAGGACTAGACAAACTCTAAACA 57.644 36.000 0.00 0.00 30.58 2.83
5500 9833 9.575783 CTATCAAGGACTAGACAAACTCTAAAC 57.424 37.037 0.00 0.00 30.58 2.01
5505 9838 5.128008 AGGCTATCAAGGACTAGACAAACTC 59.872 44.000 0.00 0.00 0.00 3.01
5507 9840 5.112686 CAGGCTATCAAGGACTAGACAAAC 58.887 45.833 0.00 0.00 0.00 2.93
5508 9841 4.383118 GCAGGCTATCAAGGACTAGACAAA 60.383 45.833 0.00 0.00 0.00 2.83
5510 9843 2.695666 GCAGGCTATCAAGGACTAGACA 59.304 50.000 0.00 0.00 0.00 3.41
5512 9845 1.957177 CGCAGGCTATCAAGGACTAGA 59.043 52.381 0.00 0.00 0.00 2.43
5515 9848 1.826024 CCGCAGGCTATCAAGGACT 59.174 57.895 0.00 0.00 46.14 3.85
5516 9849 4.445699 CCGCAGGCTATCAAGGAC 57.554 61.111 0.00 0.00 46.14 3.85
5528 9861 1.067565 TGAGTTGCTCTTAGACCGCAG 60.068 52.381 0.00 0.00 34.82 5.18
5530 9863 1.996191 CTTGAGTTGCTCTTAGACCGC 59.004 52.381 0.00 0.00 0.00 5.68
5531 9864 1.996191 GCTTGAGTTGCTCTTAGACCG 59.004 52.381 0.00 0.00 0.00 4.79
5533 9866 1.996191 CGGCTTGAGTTGCTCTTAGAC 59.004 52.381 0.00 0.00 0.00 2.59
5537 9870 0.603975 GGTCGGCTTGAGTTGCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
5538 9871 1.004440 GGTCGGCTTGAGTTGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
5539 9872 0.884704 TTGGTCGGCTTGAGTTGCTC 60.885 55.000 0.00 0.00 0.00 4.26
5540 9873 1.148273 TTGGTCGGCTTGAGTTGCT 59.852 52.632 0.00 0.00 0.00 3.91
5542 9875 1.569493 CGTTGGTCGGCTTGAGTTG 59.431 57.895 0.00 0.00 35.71 3.16
5543 9876 2.251642 GCGTTGGTCGGCTTGAGTT 61.252 57.895 0.00 0.00 40.26 3.01
5544 9877 2.665185 GCGTTGGTCGGCTTGAGT 60.665 61.111 0.00 0.00 40.26 3.41
5545 9878 2.664851 TGCGTTGGTCGGCTTGAG 60.665 61.111 0.00 0.00 40.26 3.02
5546 9879 2.970324 GTGCGTTGGTCGGCTTGA 60.970 61.111 0.00 0.00 40.26 3.02
5547 9880 2.513065 GATGTGCGTTGGTCGGCTTG 62.513 60.000 0.00 0.00 40.26 4.01
5548 9881 2.281484 ATGTGCGTTGGTCGGCTT 60.281 55.556 0.00 0.00 40.26 4.35
5551 9884 0.309302 TTTTGATGTGCGTTGGTCGG 59.691 50.000 0.00 0.00 40.26 4.79
5553 9886 2.483583 TGTTTTGATGTGCGTTGGTC 57.516 45.000 0.00 0.00 0.00 4.02
5555 9888 4.590400 TTTTTGTTTTGATGTGCGTTGG 57.410 36.364 0.00 0.00 0.00 3.77
5574 9907 9.832445 TGTCTTGTTTAAGAGACTCAGTATTTT 57.168 29.630 5.02 0.00 43.29 1.82
5577 9910 9.646427 GAATGTCTTGTTTAAGAGACTCAGTAT 57.354 33.333 5.02 0.00 43.29 2.12
5579 9912 7.731054 AGAATGTCTTGTTTAAGAGACTCAGT 58.269 34.615 5.02 0.00 43.29 3.41
5676 10009 9.921637 GTGAATTCCAATGAAAACCTATGTTTA 57.078 29.630 2.27 0.00 43.80 2.01
5677 10010 8.650490 AGTGAATTCCAATGAAAACCTATGTTT 58.350 29.630 2.27 0.00 46.50 2.83
5678 10011 8.193953 AGTGAATTCCAATGAAAACCTATGTT 57.806 30.769 2.27 0.00 33.32 2.71
5679 10012 7.451255 TGAGTGAATTCCAATGAAAACCTATGT 59.549 33.333 2.27 0.00 33.32 2.29
5680 10013 7.829725 TGAGTGAATTCCAATGAAAACCTATG 58.170 34.615 2.27 0.00 33.32 2.23
5681 10014 8.421249 TTGAGTGAATTCCAATGAAAACCTAT 57.579 30.769 2.27 0.00 33.32 2.57
5683 10016 6.729690 TTGAGTGAATTCCAATGAAAACCT 57.270 33.333 2.27 0.00 33.32 3.50
5684 10017 7.153985 TGATTGAGTGAATTCCAATGAAAACC 58.846 34.615 11.64 0.49 33.32 3.27
5687 10020 7.528996 ACTGATTGAGTGAATTCCAATGAAA 57.471 32.000 11.64 0.00 30.93 2.69
5688 10021 7.528996 AACTGATTGAGTGAATTCCAATGAA 57.471 32.000 11.64 0.00 34.02 2.57
5690 10023 9.865321 AATTAACTGATTGAGTGAATTCCAATG 57.135 29.630 11.64 3.60 40.55 2.82
5700 10033 9.778993 CTTGTTCCATAATTAACTGATTGAGTG 57.221 33.333 0.00 0.00 34.02 3.51
5701 10034 9.739276 TCTTGTTCCATAATTAACTGATTGAGT 57.261 29.630 0.00 0.00 35.94 3.41
5703 10036 9.958180 TCTCTTGTTCCATAATTAACTGATTGA 57.042 29.630 0.00 0.00 0.00 2.57
5705 10038 8.897752 GCTCTCTTGTTCCATAATTAACTGATT 58.102 33.333 0.00 0.00 0.00 2.57
5706 10039 8.270744 AGCTCTCTTGTTCCATAATTAACTGAT 58.729 33.333 0.00 0.00 0.00 2.90
5707 10040 7.550551 CAGCTCTCTTGTTCCATAATTAACTGA 59.449 37.037 0.00 0.00 0.00 3.41
5708 10041 7.335422 ACAGCTCTCTTGTTCCATAATTAACTG 59.665 37.037 0.00 0.00 0.00 3.16
5709 10042 7.398024 ACAGCTCTCTTGTTCCATAATTAACT 58.602 34.615 0.00 0.00 0.00 2.24
5710 10043 7.617041 ACAGCTCTCTTGTTCCATAATTAAC 57.383 36.000 0.00 0.00 0.00 2.01
5713 10046 6.716628 TGAAACAGCTCTCTTGTTCCATAATT 59.283 34.615 0.00 0.00 0.00 1.40
5714 10047 6.240894 TGAAACAGCTCTCTTGTTCCATAAT 58.759 36.000 0.00 0.00 0.00 1.28
5715 10048 5.620206 TGAAACAGCTCTCTTGTTCCATAA 58.380 37.500 0.00 0.00 0.00 1.90
5716 10049 5.227569 TGAAACAGCTCTCTTGTTCCATA 57.772 39.130 0.00 0.00 0.00 2.74
5717 10050 4.090761 TGAAACAGCTCTCTTGTTCCAT 57.909 40.909 0.00 0.00 0.00 3.41
5718 10051 3.558931 TGAAACAGCTCTCTTGTTCCA 57.441 42.857 0.00 0.00 0.00 3.53
5719 10052 4.322567 AGATGAAACAGCTCTCTTGTTCC 58.677 43.478 0.00 0.00 0.00 3.62
5720 10053 5.938438 AAGATGAAACAGCTCTCTTGTTC 57.062 39.130 0.00 0.00 0.00 3.18
5721 10054 5.591877 ACAAAGATGAAACAGCTCTCTTGTT 59.408 36.000 0.00 0.00 0.00 2.83
5722 10055 5.128919 ACAAAGATGAAACAGCTCTCTTGT 58.871 37.500 0.00 0.00 0.00 3.16
5723 10056 5.686159 ACAAAGATGAAACAGCTCTCTTG 57.314 39.130 0.00 0.00 0.00 3.02
5724 10057 6.705863 AAACAAAGATGAAACAGCTCTCTT 57.294 33.333 0.00 0.00 0.00 2.85
5725 10058 6.705863 AAAACAAAGATGAAACAGCTCTCT 57.294 33.333 0.00 0.00 0.00 3.10
5726 10059 8.856490 TTTAAAACAAAGATGAAACAGCTCTC 57.144 30.769 0.00 0.00 0.00 3.20
5727 10060 8.686334 TCTTTAAAACAAAGATGAAACAGCTCT 58.314 29.630 0.00 0.00 31.86 4.09
5728 10061 8.856490 TCTTTAAAACAAAGATGAAACAGCTC 57.144 30.769 0.00 0.00 31.86 4.09
5729 10062 9.651913 TTTCTTTAAAACAAAGATGAAACAGCT 57.348 25.926 0.62 0.00 36.30 4.24
5840 10173 8.691797 ACGGACCGTTAATAAAATAACTAGGTA 58.308 33.333 15.37 0.00 36.35 3.08
5841 10174 7.555965 ACGGACCGTTAATAAAATAACTAGGT 58.444 34.615 15.37 0.00 36.35 3.08
5859 10192 1.302192 ATGGACACCAAACGGACCG 60.302 57.895 13.61 13.61 36.95 4.79
5860 10193 0.536460 ACATGGACACCAAACGGACC 60.536 55.000 0.00 0.00 36.95 4.46
5861 10194 0.591170 CACATGGACACCAAACGGAC 59.409 55.000 0.00 0.00 36.95 4.79
5862 10195 0.536233 CCACATGGACACCAAACGGA 60.536 55.000 0.00 0.00 36.95 4.69
5863 10196 0.536233 TCCACATGGACACCAAACGG 60.536 55.000 0.00 0.00 39.78 4.44
5864 10197 3.014037 TCCACATGGACACCAAACG 57.986 52.632 0.00 0.00 39.78 3.60
5873 10206 1.278985 AGAGAAATGCGTCCACATGGA 59.721 47.619 0.00 0.00 43.08 3.41
5874 10207 1.667724 GAGAGAAATGCGTCCACATGG 59.332 52.381 0.00 0.00 0.00 3.66
5875 10208 1.667724 GGAGAGAAATGCGTCCACATG 59.332 52.381 0.00 0.00 0.00 3.21
5876 10209 1.407437 GGGAGAGAAATGCGTCCACAT 60.407 52.381 0.00 0.00 0.00 3.21
5877 10210 0.036388 GGGAGAGAAATGCGTCCACA 60.036 55.000 0.00 0.00 0.00 4.17
5878 10211 0.036388 TGGGAGAGAAATGCGTCCAC 60.036 55.000 0.00 0.00 0.00 4.02
5879 10212 0.690192 TTGGGAGAGAAATGCGTCCA 59.310 50.000 0.00 0.00 0.00 4.02
5881 10214 4.168760 CAAATTTGGGAGAGAAATGCGTC 58.831 43.478 10.49 0.00 0.00 5.19
5883 10216 2.925563 GCAAATTTGGGAGAGAAATGCG 59.074 45.455 19.47 0.00 0.00 4.73
5884 10217 3.929094 TGCAAATTTGGGAGAGAAATGC 58.071 40.909 19.47 2.00 0.00 3.56
5885 10218 5.114081 GGATGCAAATTTGGGAGAGAAATG 58.886 41.667 19.47 0.00 0.00 2.32
5887 10220 3.193267 CGGATGCAAATTTGGGAGAGAAA 59.807 43.478 19.47 0.00 0.00 2.52
5888 10221 2.754552 CGGATGCAAATTTGGGAGAGAA 59.245 45.455 19.47 0.00 0.00 2.87
5890 10223 1.406539 CCGGATGCAAATTTGGGAGAG 59.593 52.381 19.47 0.00 0.00 3.20
5892 10225 1.185315 ACCGGATGCAAATTTGGGAG 58.815 50.000 19.47 0.00 0.00 4.30
5893 10226 1.638529 AACCGGATGCAAATTTGGGA 58.361 45.000 19.47 2.59 0.00 4.37
5894 10227 2.075338 CAAACCGGATGCAAATTTGGG 58.925 47.619 19.47 13.45 0.00 4.12
5896 10229 1.126479 CGCAAACCGGATGCAAATTTG 59.874 47.619 27.70 14.03 44.01 2.32
5897 10230 1.270041 ACGCAAACCGGATGCAAATTT 60.270 42.857 27.70 7.78 44.01 1.82
5898 10231 0.316841 ACGCAAACCGGATGCAAATT 59.683 45.000 27.70 12.26 44.01 1.82
5899 10232 0.316841 AACGCAAACCGGATGCAAAT 59.683 45.000 27.70 15.05 44.01 2.32
5900 10233 0.318275 GAACGCAAACCGGATGCAAA 60.318 50.000 27.70 0.00 44.01 3.68
5901 10234 1.284408 GAACGCAAACCGGATGCAA 59.716 52.632 27.70 0.00 44.01 4.08
5904 10237 2.286950 CCATATGAACGCAAACCGGATG 60.287 50.000 9.46 8.22 42.52 3.51
5907 10240 1.063469 GTCCATATGAACGCAAACCGG 59.937 52.381 3.65 0.00 42.52 5.28
5908 10241 1.735018 TGTCCATATGAACGCAAACCG 59.265 47.619 3.65 0.00 44.21 4.44
5909 10242 2.097466 CCTGTCCATATGAACGCAAACC 59.903 50.000 3.65 0.00 0.00 3.27
5910 10243 3.006940 TCCTGTCCATATGAACGCAAAC 58.993 45.455 3.65 0.00 0.00 2.93
5911 10244 3.342377 TCCTGTCCATATGAACGCAAA 57.658 42.857 3.65 0.00 0.00 3.68
5912 10245 3.342377 TTCCTGTCCATATGAACGCAA 57.658 42.857 3.65 0.00 0.00 4.85
5913 10246 3.006940 GTTTCCTGTCCATATGAACGCA 58.993 45.455 3.65 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.