Multiple sequence alignment - TraesCS3B01G336600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G336600 | chr3B | 100.000 | 2498 | 0 | 0 | 1 | 2498 | 542731196 | 542728699 | 0.000000e+00 | 4614.0 |
1 | TraesCS3B01G336600 | chr3B | 88.290 | 965 | 74 | 17 | 574 | 1507 | 542723017 | 542722061 | 0.000000e+00 | 1120.0 |
2 | TraesCS3B01G336600 | chr3B | 87.258 | 620 | 72 | 7 | 1882 | 2498 | 126915807 | 126915192 | 0.000000e+00 | 701.0 |
3 | TraesCS3B01G336600 | chr3B | 84.579 | 629 | 95 | 2 | 1871 | 2498 | 566196210 | 566196837 | 7.590000e-175 | 623.0 |
4 | TraesCS3B01G336600 | chr3B | 84.420 | 629 | 86 | 9 | 1879 | 2498 | 55367991 | 55368616 | 2.120000e-170 | 608.0 |
5 | TraesCS3B01G336600 | chr3B | 95.667 | 300 | 12 | 1 | 246 | 545 | 584454864 | 584454566 | 4.830000e-132 | 481.0 |
6 | TraesCS3B01G336600 | chr3B | 94.949 | 297 | 15 | 0 | 245 | 541 | 503860003 | 503859707 | 1.350000e-127 | 466.0 |
7 | TraesCS3B01G336600 | chr3B | 94.949 | 297 | 15 | 0 | 245 | 541 | 788594406 | 788594110 | 1.350000e-127 | 466.0 |
8 | TraesCS3B01G336600 | chr3D | 87.396 | 1317 | 82 | 34 | 540 | 1820 | 416199553 | 416198285 | 0.000000e+00 | 1435.0 |
9 | TraesCS3B01G336600 | chr3D | 87.373 | 982 | 60 | 26 | 574 | 1514 | 416193677 | 416192719 | 0.000000e+00 | 1068.0 |
10 | TraesCS3B01G336600 | chr3D | 86.508 | 630 | 84 | 1 | 1867 | 2496 | 464321063 | 464321691 | 0.000000e+00 | 691.0 |
11 | TraesCS3B01G336600 | chr3D | 83.750 | 640 | 93 | 11 | 1865 | 2496 | 86365574 | 86366210 | 1.650000e-166 | 595.0 |
12 | TraesCS3B01G336600 | chr3D | 94.054 | 185 | 6 | 5 | 52 | 232 | 416210626 | 416210443 | 2.450000e-70 | 276.0 |
13 | TraesCS3B01G336600 | chr3D | 80.426 | 235 | 33 | 5 | 1829 | 2050 | 154009923 | 154009689 | 1.540000e-37 | 167.0 |
14 | TraesCS3B01G336600 | chr3D | 78.488 | 172 | 23 | 6 | 1829 | 1987 | 349646252 | 349646422 | 1.580000e-17 | 100.0 |
15 | TraesCS3B01G336600 | chr3D | 93.939 | 66 | 4 | 0 | 3 | 68 | 416210752 | 416210687 | 1.580000e-17 | 100.0 |
16 | TraesCS3B01G336600 | chr3D | 76.536 | 179 | 27 | 7 | 1829 | 1993 | 434891043 | 434891220 | 1.590000e-12 | 84.2 |
17 | TraesCS3B01G336600 | chr3A | 89.030 | 948 | 77 | 17 | 574 | 1504 | 534199900 | 534200837 | 0.000000e+00 | 1149.0 |
18 | TraesCS3B01G336600 | chr3A | 87.227 | 963 | 68 | 22 | 574 | 1533 | 534185658 | 534186568 | 0.000000e+00 | 1046.0 |
19 | TraesCS3B01G336600 | chr3A | 85.992 | 257 | 14 | 16 | 2 | 239 | 534185373 | 534185626 | 3.190000e-64 | 255.0 |
20 | TraesCS3B01G336600 | chr3A | 92.647 | 136 | 10 | 0 | 1685 | 1820 | 534196549 | 534196684 | 1.960000e-46 | 196.0 |
21 | TraesCS3B01G336600 | chr7D | 86.230 | 1024 | 52 | 30 | 536 | 1514 | 6438674 | 6437695 | 0.000000e+00 | 1027.0 |
22 | TraesCS3B01G336600 | chr7D | 87.903 | 248 | 12 | 12 | 5 | 239 | 6438939 | 6438697 | 2.450000e-70 | 276.0 |
23 | TraesCS3B01G336600 | chr1D | 88.328 | 634 | 72 | 1 | 1865 | 2498 | 95443986 | 95444617 | 0.000000e+00 | 760.0 |
24 | TraesCS3B01G336600 | chr1D | 85.179 | 641 | 84 | 9 | 1865 | 2498 | 287468658 | 287469294 | 0.000000e+00 | 647.0 |
25 | TraesCS3B01G336600 | chr5D | 84.638 | 690 | 83 | 8 | 1829 | 2498 | 443306627 | 443305941 | 0.000000e+00 | 665.0 |
26 | TraesCS3B01G336600 | chr5D | 84.735 | 642 | 87 | 11 | 1865 | 2498 | 394834322 | 394834960 | 1.260000e-177 | 632.0 |
27 | TraesCS3B01G336600 | chr5D | 81.974 | 233 | 28 | 5 | 1829 | 2048 | 532757421 | 532757652 | 4.240000e-43 | 185.0 |
28 | TraesCS3B01G336600 | chr2B | 86.926 | 566 | 70 | 4 | 1865 | 2429 | 17831546 | 17832108 | 1.260000e-177 | 632.0 |
29 | TraesCS3B01G336600 | chr2B | 96.284 | 296 | 11 | 0 | 246 | 541 | 139803688 | 139803983 | 1.040000e-133 | 486.0 |
30 | TraesCS3B01G336600 | chr2B | 95.946 | 296 | 11 | 1 | 246 | 541 | 147052055 | 147051761 | 1.740000e-131 | 479.0 |
31 | TraesCS3B01G336600 | chr6B | 84.102 | 629 | 94 | 6 | 1865 | 2492 | 574427908 | 574428531 | 9.880000e-169 | 603.0 |
32 | TraesCS3B01G336600 | chr6B | 95.623 | 297 | 13 | 0 | 245 | 541 | 166642423 | 166642719 | 6.250000e-131 | 477.0 |
33 | TraesCS3B01G336600 | chr4B | 96.622 | 296 | 10 | 0 | 246 | 541 | 27117962 | 27117667 | 2.230000e-135 | 492.0 |
34 | TraesCS3B01G336600 | chr5B | 95.333 | 300 | 14 | 0 | 246 | 545 | 488193233 | 488192934 | 6.250000e-131 | 477.0 |
35 | TraesCS3B01G336600 | chr5B | 81.952 | 543 | 72 | 9 | 1829 | 2357 | 271098763 | 271098233 | 1.060000e-118 | 436.0 |
36 | TraesCS3B01G336600 | chr1B | 95.302 | 298 | 13 | 1 | 245 | 541 | 398900829 | 398900532 | 2.910000e-129 | 472.0 |
37 | TraesCS3B01G336600 | chr6D | 78.978 | 685 | 120 | 17 | 1829 | 2498 | 298210517 | 298211192 | 1.760000e-121 | 446.0 |
38 | TraesCS3B01G336600 | chr2D | 81.702 | 235 | 28 | 4 | 1829 | 2049 | 470381948 | 470381715 | 5.490000e-42 | 182.0 |
39 | TraesCS3B01G336600 | chr7B | 76.549 | 226 | 36 | 9 | 1827 | 2048 | 367490310 | 367490522 | 9.450000e-20 | 108.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G336600 | chr3B | 542728699 | 542731196 | 2497 | True | 4614.0 | 4614 | 100.0000 | 1 | 2498 | 1 | chr3B.!!$R4 | 2497 |
1 | TraesCS3B01G336600 | chr3B | 542722061 | 542723017 | 956 | True | 1120.0 | 1120 | 88.2900 | 574 | 1507 | 1 | chr3B.!!$R3 | 933 |
2 | TraesCS3B01G336600 | chr3B | 126915192 | 126915807 | 615 | True | 701.0 | 701 | 87.2580 | 1882 | 2498 | 1 | chr3B.!!$R1 | 616 |
3 | TraesCS3B01G336600 | chr3B | 566196210 | 566196837 | 627 | False | 623.0 | 623 | 84.5790 | 1871 | 2498 | 1 | chr3B.!!$F2 | 627 |
4 | TraesCS3B01G336600 | chr3B | 55367991 | 55368616 | 625 | False | 608.0 | 608 | 84.4200 | 1879 | 2498 | 1 | chr3B.!!$F1 | 619 |
5 | TraesCS3B01G336600 | chr3D | 416198285 | 416199553 | 1268 | True | 1435.0 | 1435 | 87.3960 | 540 | 1820 | 1 | chr3D.!!$R3 | 1280 |
6 | TraesCS3B01G336600 | chr3D | 416192719 | 416193677 | 958 | True | 1068.0 | 1068 | 87.3730 | 574 | 1514 | 1 | chr3D.!!$R2 | 940 |
7 | TraesCS3B01G336600 | chr3D | 464321063 | 464321691 | 628 | False | 691.0 | 691 | 86.5080 | 1867 | 2496 | 1 | chr3D.!!$F4 | 629 |
8 | TraesCS3B01G336600 | chr3D | 86365574 | 86366210 | 636 | False | 595.0 | 595 | 83.7500 | 1865 | 2496 | 1 | chr3D.!!$F1 | 631 |
9 | TraesCS3B01G336600 | chr3A | 534196549 | 534200837 | 4288 | False | 672.5 | 1149 | 90.8385 | 574 | 1820 | 2 | chr3A.!!$F2 | 1246 |
10 | TraesCS3B01G336600 | chr3A | 534185373 | 534186568 | 1195 | False | 650.5 | 1046 | 86.6095 | 2 | 1533 | 2 | chr3A.!!$F1 | 1531 |
11 | TraesCS3B01G336600 | chr7D | 6437695 | 6438939 | 1244 | True | 651.5 | 1027 | 87.0665 | 5 | 1514 | 2 | chr7D.!!$R1 | 1509 |
12 | TraesCS3B01G336600 | chr1D | 95443986 | 95444617 | 631 | False | 760.0 | 760 | 88.3280 | 1865 | 2498 | 1 | chr1D.!!$F1 | 633 |
13 | TraesCS3B01G336600 | chr1D | 287468658 | 287469294 | 636 | False | 647.0 | 647 | 85.1790 | 1865 | 2498 | 1 | chr1D.!!$F2 | 633 |
14 | TraesCS3B01G336600 | chr5D | 443305941 | 443306627 | 686 | True | 665.0 | 665 | 84.6380 | 1829 | 2498 | 1 | chr5D.!!$R1 | 669 |
15 | TraesCS3B01G336600 | chr5D | 394834322 | 394834960 | 638 | False | 632.0 | 632 | 84.7350 | 1865 | 2498 | 1 | chr5D.!!$F1 | 633 |
16 | TraesCS3B01G336600 | chr2B | 17831546 | 17832108 | 562 | False | 632.0 | 632 | 86.9260 | 1865 | 2429 | 1 | chr2B.!!$F1 | 564 |
17 | TraesCS3B01G336600 | chr6B | 574427908 | 574428531 | 623 | False | 603.0 | 603 | 84.1020 | 1865 | 2492 | 1 | chr6B.!!$F2 | 627 |
18 | TraesCS3B01G336600 | chr5B | 271098233 | 271098763 | 530 | True | 436.0 | 436 | 81.9520 | 1829 | 2357 | 1 | chr5B.!!$R1 | 528 |
19 | TraesCS3B01G336600 | chr6D | 298210517 | 298211192 | 675 | False | 446.0 | 446 | 78.9780 | 1829 | 2498 | 1 | chr6D.!!$F1 | 669 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
486 | 508 | 0.320421 | AATGCACCGCGTCTAAGTGT | 60.32 | 50.0 | 4.92 | 0.0 | 33.96 | 3.55 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2039 | 4942 | 0.037734 | GGTCTTCGGGGTGGATTTGT | 59.962 | 55.0 | 0.0 | 0.0 | 0.0 | 2.83 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
106 | 109 | 4.819769 | GCAAGTGGCCAATCAGAAATTTA | 58.180 | 39.130 | 7.24 | 0.00 | 36.11 | 1.40 |
162 | 181 | 3.515502 | TCCTCAGGAGACATGGTTTACTG | 59.484 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
176 | 198 | 4.882427 | TGGTTTACTGGACAATCGAAACAA | 59.118 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
193 | 215 | 3.402628 | ACAATAGAGGTCGCTGTGTTT | 57.597 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
239 | 261 | 8.683550 | AACAAGCAACAGTAGAAAAGTTTTAC | 57.316 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
241 | 263 | 9.169592 | ACAAGCAACAGTAGAAAAGTTTTACTA | 57.830 | 29.630 | 0.00 | 2.68 | 0.00 | 1.82 |
255 | 277 | 8.543862 | AAAGTTTTACTATTGTACTTCCTCCG | 57.456 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
256 | 278 | 7.237209 | AGTTTTACTATTGTACTTCCTCCGT | 57.763 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
257 | 279 | 7.318893 | AGTTTTACTATTGTACTTCCTCCGTC | 58.681 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
258 | 280 | 7.178097 | AGTTTTACTATTGTACTTCCTCCGTCT | 59.822 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
260 | 282 | 7.798596 | TTACTATTGTACTTCCTCCGTCTAG | 57.201 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
261 | 283 | 5.131784 | ACTATTGTACTTCCTCCGTCTAGG | 58.868 | 45.833 | 0.00 | 0.00 | 42.97 | 3.02 |
262 | 284 | 3.446442 | TTGTACTTCCTCCGTCTAGGT | 57.554 | 47.619 | 0.00 | 0.00 | 41.99 | 3.08 |
263 | 285 | 2.719739 | TGTACTTCCTCCGTCTAGGTG | 58.280 | 52.381 | 0.00 | 0.00 | 41.99 | 4.00 |
264 | 286 | 2.306805 | TGTACTTCCTCCGTCTAGGTGA | 59.693 | 50.000 | 0.00 | 0.00 | 41.99 | 4.02 |
267 | 289 | 2.575279 | ACTTCCTCCGTCTAGGTGAGTA | 59.425 | 50.000 | 0.00 | 0.00 | 41.99 | 2.59 |
268 | 290 | 3.009916 | ACTTCCTCCGTCTAGGTGAGTAA | 59.990 | 47.826 | 0.00 | 0.00 | 41.99 | 2.24 |
270 | 292 | 2.575279 | TCCTCCGTCTAGGTGAGTAAGT | 59.425 | 50.000 | 0.00 | 0.00 | 41.99 | 2.24 |
271 | 293 | 2.944349 | CCTCCGTCTAGGTGAGTAAGTC | 59.056 | 54.545 | 0.00 | 0.00 | 41.99 | 3.01 |
272 | 294 | 3.607741 | CTCCGTCTAGGTGAGTAAGTCA | 58.392 | 50.000 | 0.00 | 0.00 | 41.99 | 3.41 |
273 | 295 | 4.200874 | CTCCGTCTAGGTGAGTAAGTCAT | 58.799 | 47.826 | 0.00 | 0.00 | 41.99 | 3.06 |
274 | 296 | 4.597004 | TCCGTCTAGGTGAGTAAGTCATT | 58.403 | 43.478 | 0.00 | 0.00 | 41.99 | 2.57 |
275 | 297 | 5.014858 | TCCGTCTAGGTGAGTAAGTCATTT | 58.985 | 41.667 | 0.00 | 0.00 | 41.99 | 2.32 |
276 | 298 | 5.479375 | TCCGTCTAGGTGAGTAAGTCATTTT | 59.521 | 40.000 | 0.00 | 0.00 | 41.99 | 1.82 |
278 | 300 | 6.973474 | CCGTCTAGGTGAGTAAGTCATTTTAG | 59.027 | 42.308 | 0.00 | 0.00 | 37.56 | 1.85 |
279 | 301 | 6.973474 | CGTCTAGGTGAGTAAGTCATTTTAGG | 59.027 | 42.308 | 0.00 | 0.00 | 37.56 | 2.69 |
280 | 302 | 7.362747 | CGTCTAGGTGAGTAAGTCATTTTAGGT | 60.363 | 40.741 | 0.00 | 0.00 | 37.56 | 3.08 |
281 | 303 | 8.312564 | GTCTAGGTGAGTAAGTCATTTTAGGTT | 58.687 | 37.037 | 0.00 | 0.00 | 37.56 | 3.50 |
282 | 304 | 8.311836 | TCTAGGTGAGTAAGTCATTTTAGGTTG | 58.688 | 37.037 | 0.00 | 0.00 | 37.56 | 3.77 |
284 | 306 | 6.710744 | AGGTGAGTAAGTCATTTTAGGTTGTG | 59.289 | 38.462 | 0.00 | 0.00 | 37.56 | 3.33 |
285 | 307 | 6.371389 | GTGAGTAAGTCATTTTAGGTTGTGC | 58.629 | 40.000 | 0.00 | 0.00 | 37.56 | 4.57 |
286 | 308 | 6.017440 | GTGAGTAAGTCATTTTAGGTTGTGCA | 60.017 | 38.462 | 0.00 | 0.00 | 37.56 | 4.57 |
287 | 309 | 6.017440 | TGAGTAAGTCATTTTAGGTTGTGCAC | 60.017 | 38.462 | 10.75 | 10.75 | 0.00 | 4.57 |
295 | 317 | 2.515057 | GGTTGTGCACCGTGACCA | 60.515 | 61.111 | 15.69 | 0.00 | 35.12 | 4.02 |
297 | 319 | 1.355210 | GTTGTGCACCGTGACCAAG | 59.645 | 57.895 | 15.69 | 0.00 | 0.00 | 3.61 |
299 | 321 | 2.110213 | GTGCACCGTGACCAAGGA | 59.890 | 61.111 | 5.22 | 0.00 | 33.97 | 3.36 |
301 | 323 | 2.358737 | GCACCGTGACCAAGGAGG | 60.359 | 66.667 | 8.91 | 2.33 | 45.67 | 4.30 |
305 | 327 | 1.609501 | CCGTGACCAAGGAGGAGGA | 60.610 | 63.158 | 0.00 | 0.00 | 41.22 | 3.71 |
306 | 328 | 1.192146 | CCGTGACCAAGGAGGAGGAA | 61.192 | 60.000 | 0.00 | 0.00 | 41.22 | 3.36 |
307 | 329 | 0.685097 | CGTGACCAAGGAGGAGGAAA | 59.315 | 55.000 | 0.00 | 0.00 | 41.22 | 3.13 |
308 | 330 | 1.071699 | CGTGACCAAGGAGGAGGAAAA | 59.928 | 52.381 | 0.00 | 0.00 | 41.22 | 2.29 |
309 | 331 | 2.486548 | CGTGACCAAGGAGGAGGAAAAA | 60.487 | 50.000 | 0.00 | 0.00 | 41.22 | 1.94 |
371 | 393 | 3.855689 | ATGCAATGAACTAACCACTGC | 57.144 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
372 | 394 | 2.580962 | TGCAATGAACTAACCACTGCA | 58.419 | 42.857 | 0.00 | 0.00 | 36.06 | 4.41 |
373 | 395 | 3.156293 | TGCAATGAACTAACCACTGCAT | 58.844 | 40.909 | 0.00 | 0.00 | 33.65 | 3.96 |
374 | 396 | 3.057386 | TGCAATGAACTAACCACTGCATG | 60.057 | 43.478 | 0.00 | 0.00 | 33.65 | 4.06 |
375 | 397 | 3.057315 | GCAATGAACTAACCACTGCATGT | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
376 | 398 | 4.726416 | CAATGAACTAACCACTGCATGTC | 58.274 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
377 | 399 | 2.412870 | TGAACTAACCACTGCATGTCG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
378 | 400 | 2.224185 | TGAACTAACCACTGCATGTCGT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
379 | 401 | 1.795768 | ACTAACCACTGCATGTCGTG | 58.204 | 50.000 | 8.87 | 8.87 | 0.00 | 4.35 |
381 | 403 | 2.143122 | CTAACCACTGCATGTCGTGTT | 58.857 | 47.619 | 13.12 | 10.39 | 0.00 | 3.32 |
382 | 404 | 1.388547 | AACCACTGCATGTCGTGTTT | 58.611 | 45.000 | 13.12 | 5.09 | 0.00 | 2.83 |
383 | 405 | 0.662619 | ACCACTGCATGTCGTGTTTG | 59.337 | 50.000 | 13.12 | 3.87 | 0.00 | 2.93 |
384 | 406 | 0.943673 | CCACTGCATGTCGTGTTTGA | 59.056 | 50.000 | 13.12 | 0.00 | 0.00 | 2.69 |
385 | 407 | 1.536766 | CCACTGCATGTCGTGTTTGAT | 59.463 | 47.619 | 13.12 | 0.00 | 0.00 | 2.57 |
387 | 409 | 3.181517 | CCACTGCATGTCGTGTTTGATAG | 60.182 | 47.826 | 13.12 | 0.00 | 0.00 | 2.08 |
392 | 414 | 3.926527 | GCATGTCGTGTTTGATAGTCTCA | 59.073 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
393 | 415 | 4.388773 | GCATGTCGTGTTTGATAGTCTCAA | 59.611 | 41.667 | 0.00 | 0.00 | 42.15 | 3.02 |
394 | 416 | 5.445142 | GCATGTCGTGTTTGATAGTCTCAAG | 60.445 | 44.000 | 0.00 | 0.00 | 44.48 | 3.02 |
395 | 417 | 5.196341 | TGTCGTGTTTGATAGTCTCAAGT | 57.804 | 39.130 | 0.00 | 0.00 | 44.48 | 3.16 |
396 | 418 | 5.597806 | TGTCGTGTTTGATAGTCTCAAGTT | 58.402 | 37.500 | 0.00 | 0.00 | 44.48 | 2.66 |
397 | 419 | 6.741109 | TGTCGTGTTTGATAGTCTCAAGTTA | 58.259 | 36.000 | 0.00 | 0.00 | 44.48 | 2.24 |
398 | 420 | 7.375834 | TGTCGTGTTTGATAGTCTCAAGTTAT | 58.624 | 34.615 | 0.00 | 0.00 | 44.48 | 1.89 |
400 | 422 | 9.350357 | GTCGTGTTTGATAGTCTCAAGTTATTA | 57.650 | 33.333 | 0.00 | 0.00 | 44.48 | 0.98 |
401 | 423 | 9.917129 | TCGTGTTTGATAGTCTCAAGTTATTAA | 57.083 | 29.630 | 0.00 | 0.00 | 44.48 | 1.40 |
409 | 431 | 9.657121 | GATAGTCTCAAGTTATTAAAAGCATGC | 57.343 | 33.333 | 10.51 | 10.51 | 0.00 | 4.06 |
410 | 432 | 7.452880 | AGTCTCAAGTTATTAAAAGCATGCA | 57.547 | 32.000 | 21.98 | 0.00 | 0.00 | 3.96 |
412 | 434 | 7.040478 | AGTCTCAAGTTATTAAAAGCATGCACA | 60.040 | 33.333 | 21.98 | 0.00 | 0.00 | 4.57 |
414 | 436 | 6.155827 | TCAAGTTATTAAAAGCATGCACACC | 58.844 | 36.000 | 21.98 | 0.00 | 0.00 | 4.16 |
415 | 437 | 5.982890 | AGTTATTAAAAGCATGCACACCT | 57.017 | 34.783 | 21.98 | 2.16 | 0.00 | 4.00 |
416 | 438 | 6.345096 | AGTTATTAAAAGCATGCACACCTT | 57.655 | 33.333 | 21.98 | 1.21 | 0.00 | 3.50 |
417 | 439 | 7.461182 | AGTTATTAAAAGCATGCACACCTTA | 57.539 | 32.000 | 21.98 | 6.66 | 0.00 | 2.69 |
418 | 440 | 7.312899 | AGTTATTAAAAGCATGCACACCTTAC | 58.687 | 34.615 | 21.98 | 8.66 | 0.00 | 2.34 |
419 | 441 | 5.982890 | ATTAAAAGCATGCACACCTTACT | 57.017 | 34.783 | 21.98 | 1.49 | 0.00 | 2.24 |
420 | 442 | 5.782893 | TTAAAAGCATGCACACCTTACTT | 57.217 | 34.783 | 21.98 | 0.00 | 0.00 | 2.24 |
422 | 444 | 2.867109 | AGCATGCACACCTTACTTCT | 57.133 | 45.000 | 21.98 | 0.00 | 0.00 | 2.85 |
423 | 445 | 2.704572 | AGCATGCACACCTTACTTCTC | 58.295 | 47.619 | 21.98 | 0.00 | 0.00 | 2.87 |
424 | 446 | 2.304180 | AGCATGCACACCTTACTTCTCT | 59.696 | 45.455 | 21.98 | 0.00 | 0.00 | 3.10 |
425 | 447 | 3.077359 | GCATGCACACCTTACTTCTCTT | 58.923 | 45.455 | 14.21 | 0.00 | 0.00 | 2.85 |
426 | 448 | 4.020218 | AGCATGCACACCTTACTTCTCTTA | 60.020 | 41.667 | 21.98 | 0.00 | 0.00 | 2.10 |
428 | 450 | 5.355350 | GCATGCACACCTTACTTCTCTTATT | 59.645 | 40.000 | 14.21 | 0.00 | 0.00 | 1.40 |
429 | 451 | 6.676456 | GCATGCACACCTTACTTCTCTTATTG | 60.676 | 42.308 | 14.21 | 0.00 | 0.00 | 1.90 |
430 | 452 | 5.245531 | TGCACACCTTACTTCTCTTATTGG | 58.754 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
431 | 453 | 5.221843 | TGCACACCTTACTTCTCTTATTGGT | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
432 | 454 | 5.705905 | GCACACCTTACTTCTCTTATTGGTT | 59.294 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
433 | 455 | 6.348540 | GCACACCTTACTTCTCTTATTGGTTG | 60.349 | 42.308 | 0.00 | 0.00 | 0.00 | 3.77 |
434 | 456 | 6.934645 | CACACCTTACTTCTCTTATTGGTTGA | 59.065 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
436 | 458 | 8.822805 | ACACCTTACTTCTCTTATTGGTTGATA | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
437 | 459 | 9.838339 | CACCTTACTTCTCTTATTGGTTGATAT | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
438 | 460 | 9.838339 | ACCTTACTTCTCTTATTGGTTGATATG | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
439 | 461 | 9.838339 | CCTTACTTCTCTTATTGGTTGATATGT | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
443 | 465 | 9.388506 | ACTTCTCTTATTGGTTGATATGTCAAG | 57.611 | 33.333 | 4.98 | 0.00 | 44.58 | 3.02 |
445 | 467 | 9.958180 | TTCTCTTATTGGTTGATATGTCAAGAA | 57.042 | 29.630 | 4.98 | 2.47 | 44.58 | 2.52 |
446 | 468 | 9.958180 | TCTCTTATTGGTTGATATGTCAAGAAA | 57.042 | 29.630 | 4.98 | 3.84 | 44.58 | 2.52 |
448 | 470 | 9.513906 | TCTTATTGGTTGATATGTCAAGAAACA | 57.486 | 29.630 | 4.98 | 0.63 | 44.58 | 2.83 |
452 | 474 | 9.829507 | ATTGGTTGATATGTCAAGAAACAAAAA | 57.170 | 25.926 | 4.98 | 0.00 | 44.58 | 1.94 |
475 | 497 | 9.520204 | AAAAATGAGATAGAATTTAATGCACCG | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 4.94 |
479 | 501 | 2.825086 | AGAATTTAATGCACCGCGTC | 57.175 | 45.000 | 4.92 | 0.00 | 0.00 | 5.19 |
480 | 502 | 2.356135 | AGAATTTAATGCACCGCGTCT | 58.644 | 42.857 | 4.92 | 0.00 | 0.00 | 4.18 |
481 | 503 | 3.527533 | AGAATTTAATGCACCGCGTCTA | 58.472 | 40.909 | 4.92 | 0.00 | 0.00 | 2.59 |
482 | 504 | 3.936453 | AGAATTTAATGCACCGCGTCTAA | 59.064 | 39.130 | 4.92 | 0.00 | 0.00 | 2.10 |
484 | 506 | 2.373540 | TTAATGCACCGCGTCTAAGT | 57.626 | 45.000 | 4.92 | 0.00 | 0.00 | 2.24 |
486 | 508 | 0.320421 | AATGCACCGCGTCTAAGTGT | 60.320 | 50.000 | 4.92 | 0.00 | 33.96 | 3.55 |
488 | 510 | 0.531090 | TGCACCGCGTCTAAGTGTTT | 60.531 | 50.000 | 4.92 | 0.00 | 33.96 | 2.83 |
489 | 511 | 0.584876 | GCACCGCGTCTAAGTGTTTT | 59.415 | 50.000 | 4.92 | 0.00 | 33.96 | 2.43 |
490 | 512 | 1.659211 | GCACCGCGTCTAAGTGTTTTG | 60.659 | 52.381 | 4.92 | 0.00 | 33.96 | 2.44 |
494 | 516 | 2.073816 | CGCGTCTAAGTGTTTTGGGAT | 58.926 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
497 | 519 | 4.331717 | CGCGTCTAAGTGTTTTGGGATTAT | 59.668 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
498 | 520 | 5.163794 | CGCGTCTAAGTGTTTTGGGATTATT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
499 | 521 | 6.617879 | GCGTCTAAGTGTTTTGGGATTATTT | 58.382 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
500 | 522 | 6.526674 | GCGTCTAAGTGTTTTGGGATTATTTG | 59.473 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
501 | 523 | 7.027161 | CGTCTAAGTGTTTTGGGATTATTTGG | 58.973 | 38.462 | 0.00 | 0.00 | 0.00 | 3.28 |
502 | 524 | 7.308951 | CGTCTAAGTGTTTTGGGATTATTTGGT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
503 | 525 | 8.364894 | GTCTAAGTGTTTTGGGATTATTTGGTT | 58.635 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
505 | 527 | 9.554395 | CTAAGTGTTTTGGGATTATTTGGTTTT | 57.446 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
506 | 528 | 8.445275 | AAGTGTTTTGGGATTATTTGGTTTTC | 57.555 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
507 | 529 | 6.704050 | AGTGTTTTGGGATTATTTGGTTTTCG | 59.296 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
508 | 530 | 6.480651 | GTGTTTTGGGATTATTTGGTTTTCGT | 59.519 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
509 | 531 | 7.652507 | GTGTTTTGGGATTATTTGGTTTTCGTA | 59.347 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
531 | 553 | 4.966965 | AGATGACTTACACACCTAGACG | 57.033 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
532 | 554 | 3.695060 | AGATGACTTACACACCTAGACGG | 59.305 | 47.826 | 0.00 | 0.00 | 39.35 | 4.79 |
533 | 555 | 3.144657 | TGACTTACACACCTAGACGGA | 57.855 | 47.619 | 0.00 | 0.00 | 36.31 | 4.69 |
534 | 556 | 3.079578 | TGACTTACACACCTAGACGGAG | 58.920 | 50.000 | 0.00 | 0.00 | 36.31 | 4.63 |
535 | 557 | 2.422832 | GACTTACACACCTAGACGGAGG | 59.577 | 54.545 | 0.00 | 0.00 | 42.89 | 4.30 |
536 | 558 | 1.749634 | CTTACACACCTAGACGGAGGG | 59.250 | 57.143 | 5.42 | 0.00 | 41.36 | 4.30 |
537 | 559 | 0.994247 | TACACACCTAGACGGAGGGA | 59.006 | 55.000 | 5.42 | 0.00 | 41.36 | 4.20 |
554 | 598 | 3.577415 | GAGGGAGTATATTTGCCGGTAGT | 59.423 | 47.826 | 1.90 | 0.00 | 0.00 | 2.73 |
556 | 600 | 4.525874 | AGGGAGTATATTTGCCGGTAGTAC | 59.474 | 45.833 | 1.90 | 0.99 | 0.00 | 2.73 |
557 | 601 | 4.281688 | GGGAGTATATTTGCCGGTAGTACA | 59.718 | 45.833 | 1.90 | 0.00 | 0.00 | 2.90 |
558 | 602 | 5.467705 | GGAGTATATTTGCCGGTAGTACAG | 58.532 | 45.833 | 1.90 | 0.00 | 0.00 | 2.74 |
559 | 603 | 5.010415 | GGAGTATATTTGCCGGTAGTACAGT | 59.990 | 44.000 | 1.90 | 0.00 | 0.00 | 3.55 |
560 | 604 | 6.207417 | GGAGTATATTTGCCGGTAGTACAGTA | 59.793 | 42.308 | 1.90 | 0.00 | 0.00 | 2.74 |
562 | 606 | 6.774656 | AGTATATTTGCCGGTAGTACAGTACT | 59.225 | 38.462 | 17.51 | 17.51 | 42.68 | 2.73 |
563 | 607 | 3.855689 | TTTGCCGGTAGTACAGTACTC | 57.144 | 47.619 | 16.91 | 8.72 | 40.14 | 2.59 |
564 | 608 | 1.755179 | TGCCGGTAGTACAGTACTCC | 58.245 | 55.000 | 16.91 | 15.52 | 40.14 | 3.85 |
667 | 3466 | 2.436646 | CGAGTTGGCCAGCCGATT | 60.437 | 61.111 | 16.95 | 0.00 | 39.42 | 3.34 |
685 | 3484 | 3.560068 | CGATTTATACCACCTGTTGCTCC | 59.440 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
883 | 3722 | 6.307318 | GTCGACGAAATGGAAGCGTATATATT | 59.693 | 38.462 | 0.00 | 0.00 | 38.51 | 1.28 |
1027 | 3894 | 1.896660 | GGTGGCAGGAAAACGAGCA | 60.897 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
1104 | 3971 | 3.503363 | GTGAGCTGCATGTCCGGC | 61.503 | 66.667 | 1.02 | 0.00 | 37.37 | 6.13 |
1325 | 4202 | 4.821589 | CCTGTCGCGGAGGAAGCC | 62.822 | 72.222 | 17.42 | 0.00 | 31.48 | 4.35 |
1549 | 4426 | 9.952030 | ATAAAACTTAGCTTCTTTCTTCTAGCT | 57.048 | 29.630 | 0.00 | 0.00 | 45.32 | 3.32 |
1551 | 4428 | 8.996024 | AAACTTAGCTTCTTTCTTCTAGCTAG | 57.004 | 34.615 | 15.01 | 15.01 | 44.39 | 3.42 |
1552 | 4429 | 7.948034 | ACTTAGCTTCTTTCTTCTAGCTAGA | 57.052 | 36.000 | 19.72 | 19.72 | 44.39 | 2.43 |
1561 | 4438 | 7.721402 | TCTTTCTTCTAGCTAGATGTCCATTC | 58.279 | 38.462 | 27.04 | 0.00 | 31.40 | 2.67 |
1571 | 4448 | 5.182760 | GCTAGATGTCCATTCATTGATTCCC | 59.817 | 44.000 | 0.00 | 0.00 | 0.00 | 3.97 |
1573 | 4450 | 3.754219 | TGTCCATTCATTGATTCCCCA | 57.246 | 42.857 | 0.00 | 0.00 | 0.00 | 4.96 |
1582 | 4459 | 4.848357 | TCATTGATTCCCCAAGTTCTCTC | 58.152 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
1594 | 4471 | 4.382901 | CCAAGTTCTCTCTCCCTCTTGATG | 60.383 | 50.000 | 0.00 | 0.00 | 35.69 | 3.07 |
1596 | 4473 | 4.882559 | AGTTCTCTCTCCCTCTTGATGAT | 58.117 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
1602 | 4479 | 7.128751 | TCTCTCTCCCTCTTGATGATTTCTTA | 58.871 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
1668 | 4546 | 7.977789 | ATTACATTGAAATTTCCAAACCACC | 57.022 | 32.000 | 15.48 | 0.00 | 0.00 | 4.61 |
1669 | 4547 | 5.365021 | ACATTGAAATTTCCAAACCACCA | 57.635 | 34.783 | 15.48 | 0.00 | 0.00 | 4.17 |
1677 | 4555 | 0.752376 | TCCAAACCACCAAACGACCC | 60.752 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1685 | 4563 | 1.071071 | CACCAAACGACCCCTTACTGA | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1686 | 4564 | 1.071228 | ACCAAACGACCCCTTACTGAC | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1699 | 4586 | 4.330074 | CCCTTACTGACGCAAATAGAACTG | 59.670 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
1706 | 4593 | 3.589988 | ACGCAAATAGAACTGTCTCCAG | 58.410 | 45.455 | 0.00 | 0.00 | 44.68 | 3.86 |
1747 | 4634 | 2.309528 | TAAATGCTAGCTGGTCACGG | 57.690 | 50.000 | 17.23 | 0.00 | 0.00 | 4.94 |
1791 | 4678 | 5.009210 | CGGTTTGAAACTGGAAATGACCTTA | 59.991 | 40.000 | 8.99 | 0.00 | 34.07 | 2.69 |
1793 | 4680 | 6.183360 | GGTTTGAAACTGGAAATGACCTTACA | 60.183 | 38.462 | 8.09 | 0.00 | 0.00 | 2.41 |
1796 | 4683 | 5.411361 | TGAAACTGGAAATGACCTTACATCG | 59.589 | 40.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1802 | 4689 | 4.457949 | GGAAATGACCTTACATCGTTGGTT | 59.542 | 41.667 | 0.00 | 0.00 | 32.30 | 3.67 |
1820 | 4707 | 4.697514 | TGGTTGAAGAGAACTGAACTCTG | 58.302 | 43.478 | 0.00 | 0.00 | 42.85 | 3.35 |
1821 | 4708 | 4.061596 | GGTTGAAGAGAACTGAACTCTGG | 58.938 | 47.826 | 0.00 | 0.00 | 42.85 | 3.86 |
1822 | 4709 | 4.202264 | GGTTGAAGAGAACTGAACTCTGGA | 60.202 | 45.833 | 0.00 | 0.00 | 42.85 | 3.86 |
1823 | 4710 | 5.360591 | GTTGAAGAGAACTGAACTCTGGAA | 58.639 | 41.667 | 0.00 | 0.00 | 42.85 | 3.53 |
1824 | 4711 | 5.207110 | TGAAGAGAACTGAACTCTGGAAG | 57.793 | 43.478 | 0.00 | 0.00 | 42.85 | 3.46 |
1825 | 4712 | 3.676291 | AGAGAACTGAACTCTGGAAGC | 57.324 | 47.619 | 0.00 | 0.00 | 42.20 | 3.86 |
1826 | 4713 | 2.968574 | AGAGAACTGAACTCTGGAAGCA | 59.031 | 45.455 | 0.00 | 0.00 | 42.20 | 3.91 |
1827 | 4714 | 3.389329 | AGAGAACTGAACTCTGGAAGCAA | 59.611 | 43.478 | 0.00 | 0.00 | 42.20 | 3.91 |
1836 | 4723 | 3.871485 | ACTCTGGAAGCAAAGCATCTAG | 58.129 | 45.455 | 1.87 | 1.87 | 36.48 | 2.43 |
1839 | 4726 | 3.771479 | TCTGGAAGCAAAGCATCTAGAGA | 59.229 | 43.478 | 6.26 | 0.00 | 38.52 | 3.10 |
1876 | 4776 | 1.070134 | GCCTCATACGCCTGGTCATTA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
1946 | 4848 | 4.742201 | CTGGACTGACCGGCACCG | 62.742 | 72.222 | 0.00 | 1.02 | 42.61 | 4.94 |
1968 | 4871 | 5.767665 | CCGTTCATATCCAACCCAAATATGA | 59.232 | 40.000 | 0.00 | 0.00 | 39.44 | 2.15 |
2018 | 4921 | 2.035312 | ACGTCCTACCCGACAGCT | 59.965 | 61.111 | 0.00 | 0.00 | 32.74 | 4.24 |
2039 | 4942 | 1.755959 | CGATCCCATCCCAAATTGCAA | 59.244 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
2102 | 5006 | 1.354705 | TCTCTTCTTCCTCCTCCACGA | 59.645 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2114 | 5018 | 1.645704 | CTCCACGACGTCCATCTCGT | 61.646 | 60.000 | 10.58 | 0.15 | 43.83 | 4.18 |
2260 | 5198 | 0.540830 | ACTCTCTGTCTCCGCCTTGT | 60.541 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2381 | 5320 | 4.660168 | ACAGAGCTTGACCAAATGATTCT | 58.340 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2397 | 5336 | 8.538856 | CAAATGATTCTAGATGAGTTCTTCGAC | 58.461 | 37.037 | 0.00 | 0.00 | 35.79 | 4.20 |
2425 | 5365 | 3.256136 | AGATTCGAACGAAGAAGTGGACT | 59.744 | 43.478 | 14.52 | 0.00 | 37.56 | 3.85 |
2429 | 5369 | 2.726760 | CGAACGAAGAAGTGGACTTGAG | 59.273 | 50.000 | 0.00 | 0.00 | 36.11 | 3.02 |
2461 | 5401 | 5.072055 | TGAGCATGAAAGAGGAAATGAACA | 58.928 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2463 | 5403 | 5.075493 | AGCATGAAAGAGGAAATGAACAGT | 58.925 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 0.759959 | ACACGGACACACCACCATTA | 59.240 | 50.000 | 0.00 | 0.00 | 38.90 | 1.90 |
24 | 25 | 1.070786 | GACACGGACACACCACCAT | 59.929 | 57.895 | 0.00 | 0.00 | 38.90 | 3.55 |
116 | 122 | 5.385198 | AGCTACCATCACTTTTCCTTTTCA | 58.615 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
162 | 181 | 4.267928 | CGACCTCTATTGTTTCGATTGTCC | 59.732 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
176 | 198 | 3.678056 | TTGAAACACAGCGACCTCTAT | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
193 | 215 | 1.375396 | AGCGCACGTAAGCCATTGA | 60.375 | 52.632 | 11.47 | 0.00 | 45.62 | 2.57 |
239 | 261 | 5.008811 | CACCTAGACGGAGGAAGTACAATAG | 59.991 | 48.000 | 7.23 | 0.00 | 39.15 | 1.73 |
241 | 263 | 3.700038 | CACCTAGACGGAGGAAGTACAAT | 59.300 | 47.826 | 7.23 | 0.00 | 39.15 | 2.71 |
242 | 264 | 3.087031 | CACCTAGACGGAGGAAGTACAA | 58.913 | 50.000 | 7.23 | 0.00 | 39.15 | 2.41 |
243 | 265 | 2.306805 | TCACCTAGACGGAGGAAGTACA | 59.693 | 50.000 | 7.23 | 0.00 | 39.15 | 2.90 |
246 | 268 | 1.355043 | ACTCACCTAGACGGAGGAAGT | 59.645 | 52.381 | 7.23 | 7.11 | 39.15 | 3.01 |
247 | 269 | 2.131776 | ACTCACCTAGACGGAGGAAG | 57.868 | 55.000 | 7.23 | 6.60 | 39.15 | 3.46 |
248 | 270 | 3.009916 | ACTTACTCACCTAGACGGAGGAA | 59.990 | 47.826 | 7.23 | 0.00 | 39.15 | 3.36 |
249 | 271 | 2.575279 | ACTTACTCACCTAGACGGAGGA | 59.425 | 50.000 | 7.23 | 0.00 | 39.15 | 3.71 |
252 | 274 | 3.708403 | TGACTTACTCACCTAGACGGA | 57.292 | 47.619 | 0.00 | 0.00 | 36.31 | 4.69 |
253 | 275 | 4.985538 | AATGACTTACTCACCTAGACGG | 57.014 | 45.455 | 0.00 | 0.00 | 39.35 | 4.79 |
254 | 276 | 6.973474 | CCTAAAATGACTTACTCACCTAGACG | 59.027 | 42.308 | 0.00 | 0.00 | 0.00 | 4.18 |
255 | 277 | 7.838884 | ACCTAAAATGACTTACTCACCTAGAC | 58.161 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
256 | 278 | 8.311836 | CAACCTAAAATGACTTACTCACCTAGA | 58.688 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
257 | 279 | 8.095169 | ACAACCTAAAATGACTTACTCACCTAG | 58.905 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
258 | 280 | 7.876068 | CACAACCTAAAATGACTTACTCACCTA | 59.124 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
260 | 282 | 6.567891 | GCACAACCTAAAATGACTTACTCACC | 60.568 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
261 | 283 | 6.017440 | TGCACAACCTAAAATGACTTACTCAC | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
262 | 284 | 6.017440 | GTGCACAACCTAAAATGACTTACTCA | 60.017 | 38.462 | 13.17 | 0.00 | 0.00 | 3.41 |
263 | 285 | 6.371389 | GTGCACAACCTAAAATGACTTACTC | 58.629 | 40.000 | 13.17 | 0.00 | 0.00 | 2.59 |
264 | 286 | 5.240844 | GGTGCACAACCTAAAATGACTTACT | 59.759 | 40.000 | 20.43 | 0.00 | 46.55 | 2.24 |
267 | 289 | 4.584327 | GGTGCACAACCTAAAATGACTT | 57.416 | 40.909 | 20.43 | 0.00 | 46.55 | 3.01 |
278 | 300 | 2.058829 | CTTGGTCACGGTGCACAACC | 62.059 | 60.000 | 20.43 | 18.91 | 46.60 | 3.77 |
279 | 301 | 1.355210 | CTTGGTCACGGTGCACAAC | 59.645 | 57.895 | 20.43 | 10.47 | 0.00 | 3.32 |
280 | 302 | 1.821759 | CCTTGGTCACGGTGCACAA | 60.822 | 57.895 | 20.43 | 9.76 | 0.00 | 3.33 |
281 | 303 | 2.203139 | CCTTGGTCACGGTGCACA | 60.203 | 61.111 | 20.43 | 1.81 | 0.00 | 4.57 |
282 | 304 | 1.961277 | CTCCTTGGTCACGGTGCAC | 60.961 | 63.158 | 8.80 | 8.80 | 0.00 | 4.57 |
284 | 306 | 2.358737 | CCTCCTTGGTCACGGTGC | 60.359 | 66.667 | 2.51 | 0.00 | 0.00 | 5.01 |
285 | 307 | 1.293498 | CTCCTCCTTGGTCACGGTG | 59.707 | 63.158 | 0.56 | 0.56 | 37.07 | 4.94 |
286 | 308 | 1.913762 | CCTCCTCCTTGGTCACGGT | 60.914 | 63.158 | 0.00 | 0.00 | 37.07 | 4.83 |
287 | 309 | 1.192146 | TTCCTCCTCCTTGGTCACGG | 61.192 | 60.000 | 0.00 | 0.00 | 37.07 | 4.94 |
288 | 310 | 0.685097 | TTTCCTCCTCCTTGGTCACG | 59.315 | 55.000 | 0.00 | 0.00 | 37.07 | 4.35 |
289 | 311 | 2.951229 | TTTTCCTCCTCCTTGGTCAC | 57.049 | 50.000 | 0.00 | 0.00 | 37.07 | 3.67 |
346 | 368 | 4.221262 | AGTGGTTAGTTCATTGCATGCAAT | 59.779 | 37.500 | 34.78 | 34.78 | 46.35 | 3.56 |
348 | 370 | 3.057386 | CAGTGGTTAGTTCATTGCATGCA | 60.057 | 43.478 | 18.46 | 18.46 | 0.00 | 3.96 |
350 | 372 | 3.504863 | GCAGTGGTTAGTTCATTGCATG | 58.495 | 45.455 | 6.68 | 0.00 | 44.01 | 4.06 |
351 | 373 | 3.855689 | GCAGTGGTTAGTTCATTGCAT | 57.144 | 42.857 | 6.68 | 0.00 | 44.01 | 3.96 |
353 | 375 | 3.057315 | ACATGCAGTGGTTAGTTCATTGC | 60.057 | 43.478 | 0.00 | 4.92 | 44.56 | 3.56 |
354 | 376 | 4.669965 | CGACATGCAGTGGTTAGTTCATTG | 60.670 | 45.833 | 0.00 | 0.00 | 0.00 | 2.82 |
355 | 377 | 3.436704 | CGACATGCAGTGGTTAGTTCATT | 59.563 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
356 | 378 | 3.002791 | CGACATGCAGTGGTTAGTTCAT | 58.997 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
358 | 380 | 2.157668 | CACGACATGCAGTGGTTAGTTC | 59.842 | 50.000 | 11.93 | 0.00 | 37.03 | 3.01 |
361 | 383 | 1.795768 | ACACGACATGCAGTGGTTAG | 58.204 | 50.000 | 20.60 | 1.38 | 42.25 | 2.34 |
362 | 384 | 2.248280 | AACACGACATGCAGTGGTTA | 57.752 | 45.000 | 20.60 | 0.00 | 42.25 | 2.85 |
363 | 385 | 1.388547 | AAACACGACATGCAGTGGTT | 58.611 | 45.000 | 20.60 | 18.36 | 42.73 | 3.67 |
364 | 386 | 0.662619 | CAAACACGACATGCAGTGGT | 59.337 | 50.000 | 20.60 | 14.15 | 42.25 | 4.16 |
366 | 388 | 2.975410 | ATCAAACACGACATGCAGTG | 57.025 | 45.000 | 16.62 | 16.62 | 43.46 | 3.66 |
367 | 389 | 3.664107 | ACTATCAAACACGACATGCAGT | 58.336 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
368 | 390 | 3.928992 | AGACTATCAAACACGACATGCAG | 59.071 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
369 | 391 | 3.925379 | AGACTATCAAACACGACATGCA | 58.075 | 40.909 | 0.00 | 0.00 | 0.00 | 3.96 |
383 | 405 | 9.657121 | GCATGCTTTTAATAACTTGAGACTATC | 57.343 | 33.333 | 11.37 | 0.00 | 0.00 | 2.08 |
384 | 406 | 9.177608 | TGCATGCTTTTAATAACTTGAGACTAT | 57.822 | 29.630 | 20.33 | 0.00 | 0.00 | 2.12 |
385 | 407 | 8.450964 | GTGCATGCTTTTAATAACTTGAGACTA | 58.549 | 33.333 | 20.33 | 0.00 | 0.00 | 2.59 |
387 | 409 | 7.061094 | GTGTGCATGCTTTTAATAACTTGAGAC | 59.939 | 37.037 | 20.33 | 2.56 | 0.00 | 3.36 |
392 | 414 | 6.345096 | AGGTGTGCATGCTTTTAATAACTT | 57.655 | 33.333 | 20.33 | 0.00 | 0.00 | 2.66 |
393 | 415 | 5.982890 | AGGTGTGCATGCTTTTAATAACT | 57.017 | 34.783 | 20.33 | 0.92 | 0.00 | 2.24 |
394 | 416 | 7.312899 | AGTAAGGTGTGCATGCTTTTAATAAC | 58.687 | 34.615 | 20.33 | 6.41 | 0.00 | 1.89 |
395 | 417 | 7.461182 | AGTAAGGTGTGCATGCTTTTAATAA | 57.539 | 32.000 | 20.33 | 0.00 | 0.00 | 1.40 |
396 | 418 | 7.393234 | AGAAGTAAGGTGTGCATGCTTTTAATA | 59.607 | 33.333 | 20.33 | 3.11 | 0.00 | 0.98 |
397 | 419 | 5.982890 | AGTAAGGTGTGCATGCTTTTAAT | 57.017 | 34.783 | 20.33 | 6.78 | 0.00 | 1.40 |
398 | 420 | 5.534654 | AGAAGTAAGGTGTGCATGCTTTTAA | 59.465 | 36.000 | 20.33 | 0.00 | 0.00 | 1.52 |
400 | 422 | 3.891366 | AGAAGTAAGGTGTGCATGCTTTT | 59.109 | 39.130 | 20.33 | 8.36 | 0.00 | 2.27 |
401 | 423 | 3.490348 | AGAAGTAAGGTGTGCATGCTTT | 58.510 | 40.909 | 20.33 | 8.03 | 0.00 | 3.51 |
402 | 424 | 3.077359 | GAGAAGTAAGGTGTGCATGCTT | 58.923 | 45.455 | 20.33 | 6.81 | 0.00 | 3.91 |
404 | 426 | 2.704572 | AGAGAAGTAAGGTGTGCATGC | 58.295 | 47.619 | 11.82 | 11.82 | 0.00 | 4.06 |
405 | 427 | 6.183360 | CCAATAAGAGAAGTAAGGTGTGCATG | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 4.06 |
406 | 428 | 5.882557 | CCAATAAGAGAAGTAAGGTGTGCAT | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 3.96 |
407 | 429 | 5.221843 | ACCAATAAGAGAAGTAAGGTGTGCA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
408 | 430 | 5.246307 | ACCAATAAGAGAAGTAAGGTGTGC | 58.754 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
409 | 431 | 6.934645 | TCAACCAATAAGAGAAGTAAGGTGTG | 59.065 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
410 | 432 | 7.074653 | TCAACCAATAAGAGAAGTAAGGTGT | 57.925 | 36.000 | 0.00 | 0.00 | 0.00 | 4.16 |
412 | 434 | 9.838339 | CATATCAACCAATAAGAGAAGTAAGGT | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
417 | 439 | 9.388506 | CTTGACATATCAACCAATAAGAGAAGT | 57.611 | 33.333 | 0.00 | 0.00 | 40.01 | 3.01 |
418 | 440 | 9.605275 | TCTTGACATATCAACCAATAAGAGAAG | 57.395 | 33.333 | 0.00 | 0.00 | 40.01 | 2.85 |
419 | 441 | 9.958180 | TTCTTGACATATCAACCAATAAGAGAA | 57.042 | 29.630 | 0.00 | 0.00 | 40.01 | 2.87 |
420 | 442 | 9.958180 | TTTCTTGACATATCAACCAATAAGAGA | 57.042 | 29.630 | 0.00 | 0.00 | 40.01 | 3.10 |
422 | 444 | 9.513906 | TGTTTCTTGACATATCAACCAATAAGA | 57.486 | 29.630 | 0.00 | 0.00 | 40.01 | 2.10 |
426 | 448 | 9.829507 | TTTTTGTTTCTTGACATATCAACCAAT | 57.170 | 25.926 | 0.00 | 0.00 | 40.01 | 3.16 |
449 | 471 | 9.520204 | CGGTGCATTAAATTCTATCTCATTTTT | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
450 | 472 | 7.649306 | GCGGTGCATTAAATTCTATCTCATTTT | 59.351 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
451 | 473 | 7.141363 | GCGGTGCATTAAATTCTATCTCATTT | 58.859 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
452 | 474 | 6.566564 | CGCGGTGCATTAAATTCTATCTCATT | 60.567 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
453 | 475 | 5.106948 | CGCGGTGCATTAAATTCTATCTCAT | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
458 | 480 | 4.127171 | AGACGCGGTGCATTAAATTCTAT | 58.873 | 39.130 | 12.47 | 0.00 | 0.00 | 1.98 |
459 | 481 | 3.527533 | AGACGCGGTGCATTAAATTCTA | 58.472 | 40.909 | 12.47 | 0.00 | 0.00 | 2.10 |
460 | 482 | 2.356135 | AGACGCGGTGCATTAAATTCT | 58.644 | 42.857 | 12.47 | 0.00 | 0.00 | 2.40 |
462 | 484 | 3.687698 | ACTTAGACGCGGTGCATTAAATT | 59.312 | 39.130 | 12.47 | 0.00 | 0.00 | 1.82 |
463 | 485 | 3.063452 | CACTTAGACGCGGTGCATTAAAT | 59.937 | 43.478 | 12.47 | 0.00 | 0.00 | 1.40 |
464 | 486 | 2.413796 | CACTTAGACGCGGTGCATTAAA | 59.586 | 45.455 | 12.47 | 0.00 | 0.00 | 1.52 |
465 | 487 | 1.996898 | CACTTAGACGCGGTGCATTAA | 59.003 | 47.619 | 12.47 | 0.00 | 0.00 | 1.40 |
466 | 488 | 1.067425 | ACACTTAGACGCGGTGCATTA | 60.067 | 47.619 | 12.47 | 0.00 | 34.70 | 1.90 |
469 | 491 | 0.531090 | AAACACTTAGACGCGGTGCA | 60.531 | 50.000 | 12.47 | 0.00 | 34.70 | 4.57 |
470 | 492 | 0.584876 | AAAACACTTAGACGCGGTGC | 59.415 | 50.000 | 12.47 | 0.00 | 34.70 | 5.01 |
471 | 493 | 1.070175 | CCAAAACACTTAGACGCGGTG | 60.070 | 52.381 | 12.47 | 11.18 | 37.05 | 4.94 |
473 | 495 | 0.515564 | CCCAAAACACTTAGACGCGG | 59.484 | 55.000 | 12.47 | 0.00 | 0.00 | 6.46 |
475 | 497 | 5.813080 | ATAATCCCAAAACACTTAGACGC | 57.187 | 39.130 | 0.00 | 0.00 | 0.00 | 5.19 |
479 | 501 | 9.554395 | AAAACCAAATAATCCCAAAACACTTAG | 57.446 | 29.630 | 0.00 | 0.00 | 0.00 | 2.18 |
480 | 502 | 9.549078 | GAAAACCAAATAATCCCAAAACACTTA | 57.451 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
481 | 503 | 7.225734 | CGAAAACCAAATAATCCCAAAACACTT | 59.774 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
482 | 504 | 6.704050 | CGAAAACCAAATAATCCCAAAACACT | 59.296 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
484 | 506 | 6.583562 | ACGAAAACCAAATAATCCCAAAACA | 58.416 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
486 | 508 | 8.639761 | TCTTACGAAAACCAAATAATCCCAAAA | 58.360 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
488 | 510 | 7.762588 | TCTTACGAAAACCAAATAATCCCAA | 57.237 | 32.000 | 0.00 | 0.00 | 0.00 | 4.12 |
489 | 511 | 7.612244 | TCATCTTACGAAAACCAAATAATCCCA | 59.388 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
490 | 512 | 7.913821 | GTCATCTTACGAAAACCAAATAATCCC | 59.086 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
506 | 528 | 9.720809 | CCGTCTAGGTGTGTAAGTCATCTTACG | 62.721 | 48.148 | 11.67 | 0.00 | 44.84 | 3.18 |
507 | 529 | 6.677431 | CCGTCTAGGTGTGTAAGTCATCTTAC | 60.677 | 46.154 | 10.12 | 10.12 | 43.75 | 2.34 |
508 | 530 | 5.356190 | CCGTCTAGGTGTGTAAGTCATCTTA | 59.644 | 44.000 | 0.00 | 0.00 | 33.66 | 2.10 |
509 | 531 | 4.158025 | CCGTCTAGGTGTGTAAGTCATCTT | 59.842 | 45.833 | 0.00 | 0.00 | 35.02 | 2.40 |
513 | 535 | 3.079578 | CTCCGTCTAGGTGTGTAAGTCA | 58.920 | 50.000 | 0.00 | 0.00 | 41.99 | 3.41 |
514 | 536 | 2.422832 | CCTCCGTCTAGGTGTGTAAGTC | 59.577 | 54.545 | 0.00 | 0.00 | 41.99 | 3.01 |
516 | 538 | 1.749634 | CCCTCCGTCTAGGTGTGTAAG | 59.250 | 57.143 | 0.00 | 0.00 | 41.99 | 2.34 |
517 | 539 | 1.355381 | TCCCTCCGTCTAGGTGTGTAA | 59.645 | 52.381 | 0.00 | 0.00 | 41.99 | 2.41 |
518 | 540 | 0.994247 | TCCCTCCGTCTAGGTGTGTA | 59.006 | 55.000 | 0.00 | 0.00 | 41.99 | 2.90 |
520 | 542 | 0.323542 | ACTCCCTCCGTCTAGGTGTG | 60.324 | 60.000 | 0.00 | 0.00 | 41.99 | 3.82 |
521 | 543 | 1.293062 | TACTCCCTCCGTCTAGGTGT | 58.707 | 55.000 | 0.00 | 0.00 | 41.99 | 4.16 |
522 | 544 | 2.660670 | ATACTCCCTCCGTCTAGGTG | 57.339 | 55.000 | 0.00 | 0.00 | 41.99 | 4.00 |
523 | 545 | 5.078256 | CAAATATACTCCCTCCGTCTAGGT | 58.922 | 45.833 | 0.00 | 0.00 | 41.99 | 3.08 |
524 | 546 | 4.082136 | GCAAATATACTCCCTCCGTCTAGG | 60.082 | 50.000 | 0.00 | 0.00 | 42.97 | 3.02 |
526 | 548 | 3.830755 | GGCAAATATACTCCCTCCGTCTA | 59.169 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
527 | 549 | 2.633481 | GGCAAATATACTCCCTCCGTCT | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
529 | 551 | 1.343465 | CGGCAAATATACTCCCTCCGT | 59.657 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
530 | 552 | 1.337823 | CCGGCAAATATACTCCCTCCG | 60.338 | 57.143 | 0.00 | 0.00 | 35.80 | 4.63 |
531 | 553 | 1.697982 | ACCGGCAAATATACTCCCTCC | 59.302 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
532 | 554 | 3.577415 | ACTACCGGCAAATATACTCCCTC | 59.423 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
533 | 555 | 3.584294 | ACTACCGGCAAATATACTCCCT | 58.416 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
534 | 556 | 4.281688 | TGTACTACCGGCAAATATACTCCC | 59.718 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
535 | 557 | 5.010415 | ACTGTACTACCGGCAAATATACTCC | 59.990 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
536 | 558 | 6.081872 | ACTGTACTACCGGCAAATATACTC | 57.918 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
537 | 559 | 6.774656 | AGTACTGTACTACCGGCAAATATACT | 59.225 | 38.462 | 18.42 | 0.00 | 37.23 | 2.12 |
554 | 598 | 3.433274 | CGTGTCTGTTACGGAGTACTGTA | 59.567 | 47.826 | 0.00 | 0.00 | 45.76 | 2.74 |
556 | 600 | 2.847901 | CGTGTCTGTTACGGAGTACTG | 58.152 | 52.381 | 0.00 | 0.00 | 45.76 | 2.74 |
557 | 601 | 1.198637 | GCGTGTCTGTTACGGAGTACT | 59.801 | 52.381 | 0.00 | 0.00 | 45.76 | 2.73 |
558 | 602 | 1.069022 | TGCGTGTCTGTTACGGAGTAC | 60.069 | 52.381 | 0.00 | 0.00 | 45.76 | 2.73 |
559 | 603 | 1.237533 | TGCGTGTCTGTTACGGAGTA | 58.762 | 50.000 | 0.00 | 0.00 | 45.11 | 2.59 |
560 | 604 | 0.386476 | TTGCGTGTCTGTTACGGAGT | 59.614 | 50.000 | 0.00 | 0.00 | 42.57 | 3.85 |
562 | 606 | 1.937278 | TTTTGCGTGTCTGTTACGGA | 58.063 | 45.000 | 0.00 | 0.00 | 41.56 | 4.69 |
563 | 607 | 2.741122 | TTTTTGCGTGTCTGTTACGG | 57.259 | 45.000 | 0.00 | 0.00 | 41.56 | 4.02 |
667 | 3466 | 2.684001 | CGGAGCAACAGGTGGTATAA | 57.316 | 50.000 | 0.00 | 0.00 | 38.34 | 0.98 |
685 | 3484 | 1.148498 | GGGTTTGGAGGATAGGGCG | 59.852 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
865 | 3690 | 7.117812 | CCTCGTGAAATATATACGCTTCCATTT | 59.882 | 37.037 | 2.29 | 0.00 | 37.70 | 2.32 |
883 | 3722 | 1.668919 | GCAACTCGATCACCTCGTGAA | 60.669 | 52.381 | 0.00 | 0.00 | 45.96 | 3.18 |
900 | 3741 | 4.629634 | CGTTATGAGAGTGTACAATGGCAA | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
1027 | 3894 | 1.294780 | CGAGGCAGAAGAAGCACCT | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
1548 | 4425 | 5.709164 | GGGGAATCAATGAATGGACATCTAG | 59.291 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1549 | 4426 | 5.134169 | TGGGGAATCAATGAATGGACATCTA | 59.866 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1550 | 4427 | 4.079038 | TGGGGAATCAATGAATGGACATCT | 60.079 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1551 | 4428 | 4.217510 | TGGGGAATCAATGAATGGACATC | 58.782 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1552 | 4429 | 4.268828 | TGGGGAATCAATGAATGGACAT | 57.731 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
1561 | 4438 | 4.853007 | AGAGAGAACTTGGGGAATCAATG | 58.147 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
1571 | 4448 | 3.169099 | TCAAGAGGGAGAGAGAACTTGG | 58.831 | 50.000 | 0.00 | 0.00 | 36.45 | 3.61 |
1573 | 4450 | 4.682563 | TCATCAAGAGGGAGAGAGAACTT | 58.317 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1582 | 4459 | 7.772292 | TGTCAATAAGAAATCATCAAGAGGGAG | 59.228 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1651 | 4528 | 4.081642 | TCGTTTGGTGGTTTGGAAATTTCA | 60.082 | 37.500 | 19.49 | 3.64 | 0.00 | 2.69 |
1652 | 4529 | 4.269123 | GTCGTTTGGTGGTTTGGAAATTTC | 59.731 | 41.667 | 9.83 | 9.83 | 0.00 | 2.17 |
1658 | 4535 | 0.752376 | GGGTCGTTTGGTGGTTTGGA | 60.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1660 | 4537 | 0.753848 | AGGGGTCGTTTGGTGGTTTG | 60.754 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1668 | 4546 | 1.425412 | CGTCAGTAAGGGGTCGTTTG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1669 | 4547 | 0.320160 | GCGTCAGTAAGGGGTCGTTT | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
1677 | 4555 | 4.929808 | ACAGTTCTATTTGCGTCAGTAAGG | 59.070 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1685 | 4563 | 3.678056 | TGGAGACAGTTCTATTTGCGT | 57.322 | 42.857 | 0.00 | 0.00 | 35.01 | 5.24 |
1699 | 4586 | 0.678366 | TCCTGCGAGAGACTGGAGAC | 60.678 | 60.000 | 0.00 | 0.00 | 33.74 | 3.36 |
1747 | 4634 | 4.166011 | GCTCCATCACCGCAACGC | 62.166 | 66.667 | 0.00 | 0.00 | 0.00 | 4.84 |
1753 | 4640 | 1.234615 | AAACCGTTGCTCCATCACCG | 61.235 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1791 | 4678 | 3.809832 | CAGTTCTCTTCAACCAACGATGT | 59.190 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1793 | 4680 | 4.336889 | TCAGTTCTCTTCAACCAACGAT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 3.73 |
1796 | 4683 | 5.007136 | CAGAGTTCAGTTCTCTTCAACCAAC | 59.993 | 44.000 | 0.00 | 0.00 | 39.84 | 3.77 |
1802 | 4689 | 4.502259 | GCTTCCAGAGTTCAGTTCTCTTCA | 60.502 | 45.833 | 0.00 | 0.00 | 39.84 | 3.02 |
1820 | 4707 | 2.863137 | CGTCTCTAGATGCTTTGCTTCC | 59.137 | 50.000 | 0.00 | 0.00 | 33.95 | 3.46 |
1821 | 4708 | 2.863137 | CCGTCTCTAGATGCTTTGCTTC | 59.137 | 50.000 | 0.00 | 0.00 | 33.70 | 3.86 |
1822 | 4709 | 2.419297 | CCCGTCTCTAGATGCTTTGCTT | 60.419 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1823 | 4710 | 1.137872 | CCCGTCTCTAGATGCTTTGCT | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1824 | 4711 | 1.576356 | CCCGTCTCTAGATGCTTTGC | 58.424 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1825 | 4712 | 1.576356 | GCCCGTCTCTAGATGCTTTG | 58.424 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1826 | 4713 | 0.103208 | CGCCCGTCTCTAGATGCTTT | 59.897 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1827 | 4714 | 1.736586 | CGCCCGTCTCTAGATGCTT | 59.263 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
1836 | 4723 | 3.119096 | GTTTGAGGCGCCCGTCTC | 61.119 | 66.667 | 26.15 | 15.26 | 46.19 | 3.36 |
1897 | 4798 | 0.245539 | CGTTTAAGAGGCCCGTCTGA | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1946 | 4848 | 6.294731 | GCCTCATATTTGGGTTGGATATGAAC | 60.295 | 42.308 | 6.70 | 0.00 | 40.37 | 3.18 |
1947 | 4849 | 5.774690 | GCCTCATATTTGGGTTGGATATGAA | 59.225 | 40.000 | 6.70 | 0.00 | 40.37 | 2.57 |
1968 | 4871 | 2.520536 | GGCACCTCCATATCCGCCT | 61.521 | 63.158 | 0.00 | 0.00 | 36.58 | 5.52 |
2006 | 4909 | 1.655329 | GGATCGAGCTGTCGGGTAG | 59.345 | 63.158 | 0.00 | 0.00 | 46.80 | 3.18 |
2007 | 4910 | 1.826921 | GGGATCGAGCTGTCGGGTA | 60.827 | 63.158 | 0.00 | 0.00 | 46.80 | 3.69 |
2018 | 4921 | 1.064091 | TGCAATTTGGGATGGGATCGA | 60.064 | 47.619 | 0.00 | 0.00 | 0.00 | 3.59 |
2039 | 4942 | 0.037734 | GGTCTTCGGGGTGGATTTGT | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2102 | 5006 | 2.885861 | GGAGCACGAGATGGACGT | 59.114 | 61.111 | 0.00 | 0.00 | 44.83 | 4.34 |
2381 | 5320 | 4.251268 | TGACGAGTCGAAGAACTCATCTA | 58.749 | 43.478 | 21.50 | 0.00 | 39.69 | 1.98 |
2397 | 5336 | 3.118807 | TCTTCGTTCGAATCTGACGAG | 57.881 | 47.619 | 0.00 | 0.94 | 40.72 | 4.18 |
2403 | 5342 | 3.256136 | AGTCCACTTCTTCGTTCGAATCT | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2446 | 5386 | 5.300286 | CCACTTGACTGTTCATTTCCTCTTT | 59.700 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2461 | 5401 | 5.046014 | AGTTGAGAATATGCTCCACTTGACT | 60.046 | 40.000 | 11.02 | 2.52 | 37.55 | 3.41 |
2463 | 5403 | 5.426689 | AGTTGAGAATATGCTCCACTTGA | 57.573 | 39.130 | 11.02 | 0.00 | 37.55 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.