Multiple sequence alignment - TraesCS3B01G336400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G336400 chr3B 100.000 1889 0 0 1 1889 542678335 542676447 0.000000e+00 3489.0
1 TraesCS3B01G336400 chr3B 100.000 315 0 0 2208 2522 542676128 542675814 1.300000e-162 582.0
2 TraesCS3B01G336400 chr3A 90.375 1839 127 25 1 1824 534323064 534324867 0.000000e+00 2370.0
3 TraesCS3B01G336400 chr3A 85.942 313 30 7 2212 2522 534325082 534325382 3.130000e-84 322.0
4 TraesCS3B01G336400 chr3A 96.721 61 2 0 1826 1886 534324943 534325003 4.440000e-18 102.0
5 TraesCS3B01G336400 chr7D 90.065 1852 109 30 1 1823 6401298 6399493 0.000000e+00 2331.0
6 TraesCS3B01G336400 chr7D 94.656 131 7 0 2357 2487 6399373 6399243 1.180000e-48 204.0
7 TraesCS3B01G336400 chr7D 77.090 323 49 12 2220 2517 231383544 231383866 2.010000e-36 163.0
8 TraesCS3B01G336400 chr3D 91.701 723 51 7 954 1673 416187022 416186306 0.000000e+00 994.0
9 TraesCS3B01G336400 chr3D 92.248 387 15 6 563 937 416187536 416187153 3.690000e-148 534.0
10 TraesCS3B01G336400 chr3D 89.809 314 28 4 2211 2522 416142073 416141762 1.410000e-107 399.0
11 TraesCS3B01G336400 chr3D 93.750 64 4 0 1826 1889 416142212 416142149 2.070000e-16 97.1
12 TraesCS3B01G336400 chr7B 86.782 174 20 3 2242 2413 478830640 478830468 9.210000e-45 191.0
13 TraesCS3B01G336400 chr6D 78.370 319 38 16 2229 2522 60498824 60498512 7.170000e-41 178.0
14 TraesCS3B01G336400 chr6D 91.000 100 5 4 2321 2418 380558151 380558248 5.660000e-27 132.0
15 TraesCS3B01G336400 chr5A 83.077 195 26 6 2226 2418 632668709 632668520 1.200000e-38 171.0
16 TraesCS3B01G336400 chr4A 77.124 306 45 10 2242 2522 222567070 222566765 1.210000e-33 154.0
17 TraesCS3B01G336400 chr1B 83.851 161 21 4 2260 2418 451086271 451086428 5.620000e-32 148.0
18 TraesCS3B01G336400 chr1D 77.224 281 38 11 2267 2522 328861450 328861729 9.410000e-30 141.0
19 TraesCS3B01G336400 chr2D 84.173 139 11 9 2266 2401 442444935 442445065 9.470000e-25 124.0
20 TraesCS3B01G336400 chr2D 81.905 105 15 2 2422 2522 634078342 634078446 4.470000e-13 86.1
21 TraesCS3B01G336400 chr1A 79.042 167 30 5 2254 2418 238085409 238085246 2.650000e-20 110.0
22 TraesCS3B01G336400 chr6A 89.412 85 9 0 2438 2522 499586756 499586840 9.540000e-20 108.0
23 TraesCS3B01G336400 chr6A 87.097 93 6 4 2326 2418 521987743 521987829 1.600000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G336400 chr3B 542675814 542678335 2521 True 2035.500000 3489 100.000000 1 2522 2 chr3B.!!$R1 2521
1 TraesCS3B01G336400 chr3A 534323064 534325382 2318 False 931.333333 2370 91.012667 1 2522 3 chr3A.!!$F1 2521
2 TraesCS3B01G336400 chr7D 6399243 6401298 2055 True 1267.500000 2331 92.360500 1 2487 2 chr7D.!!$R1 2486
3 TraesCS3B01G336400 chr3D 416186306 416187536 1230 True 764.000000 994 91.974500 563 1673 2 chr3D.!!$R2 1110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 882 0.46729 AAGCAACCCGGTGTGAACAT 60.467 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2502 2764 0.537371 ACTTCCAAAGCAGAACCCGG 60.537 55.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.826157 CCAAGGACCTTTATGCACAAAGA 59.174 43.478 18.96 0.00 37.66 2.52
66 67 8.996651 ATTTTATATTTCTGTAGGGTCCTTGG 57.003 34.615 0.00 0.00 0.00 3.61
106 107 1.682323 CTTCTACCTAGGTCCTTCGGC 59.318 57.143 20.32 0.00 0.00 5.54
113 114 4.097361 GGTCCTTCGGCACCCTCC 62.097 72.222 0.00 0.00 0.00 4.30
162 163 1.935199 GCTTGCATTGCACAAAACACT 59.065 42.857 11.66 0.00 38.71 3.55
184 185 9.021807 ACACTAGTGCTAAGTTCTTCATTACTA 57.978 33.333 22.90 0.00 0.00 1.82
262 267 3.982475 AGCATGGTGTACTGATATGACG 58.018 45.455 0.00 0.00 0.00 4.35
271 276 2.030562 GATATGACGGTGGCGGGG 59.969 66.667 0.00 0.00 0.00 5.73
306 311 7.227156 TGCTATTTTCACTTTCTCTCTTTCCT 58.773 34.615 0.00 0.00 0.00 3.36
328 341 2.765699 AGTTGCCACCATTGTCAAGTTT 59.234 40.909 0.00 0.00 0.00 2.66
330 343 4.404073 AGTTGCCACCATTGTCAAGTTTAA 59.596 37.500 0.00 0.00 0.00 1.52
331 344 5.070313 AGTTGCCACCATTGTCAAGTTTAAT 59.930 36.000 0.00 0.00 0.00 1.40
332 345 5.543507 TGCCACCATTGTCAAGTTTAATT 57.456 34.783 0.00 0.00 0.00 1.40
333 346 5.923204 TGCCACCATTGTCAAGTTTAATTT 58.077 33.333 0.00 0.00 0.00 1.82
334 347 6.352516 TGCCACCATTGTCAAGTTTAATTTT 58.647 32.000 0.00 0.00 0.00 1.82
335 348 6.825721 TGCCACCATTGTCAAGTTTAATTTTT 59.174 30.769 0.00 0.00 0.00 1.94
457 477 2.074547 TAGTCGGGAAAAAGTCGCTG 57.925 50.000 0.00 0.00 37.05 5.18
583 603 2.857104 GCCGACTGGTTTTGTTAACAGC 60.857 50.000 8.56 1.03 37.67 4.40
692 721 3.654273 CTCAACTCCCCTATCACCCTAA 58.346 50.000 0.00 0.00 0.00 2.69
701 732 3.626475 CCCTATCACCCTAACCCCAAAAC 60.626 52.174 0.00 0.00 0.00 2.43
794 835 9.474313 TGGTTAACCAAGCAAATCTCTAATATT 57.526 29.630 25.19 0.00 44.35 1.28
795 836 9.952188 GGTTAACCAAGCAAATCTCTAATATTC 57.048 33.333 20.12 0.00 35.64 1.75
800 841 9.860898 ACCAAGCAAATCTCTAATATTCAAAAC 57.139 29.630 0.00 0.00 0.00 2.43
801 842 9.305925 CCAAGCAAATCTCTAATATTCAAAACC 57.694 33.333 0.00 0.00 0.00 3.27
816 857 2.738213 AAACCTGCAGGCACCTCGAG 62.738 60.000 33.06 5.13 39.32 4.04
840 881 1.077357 AAGCAACCCGGTGTGAACA 60.077 52.632 0.00 0.00 0.00 3.18
841 882 0.467290 AAGCAACCCGGTGTGAACAT 60.467 50.000 0.00 0.00 0.00 2.71
842 883 0.467290 AGCAACCCGGTGTGAACATT 60.467 50.000 0.00 0.00 0.00 2.71
937 985 2.169352 ACCTCGACGACCTAGCTAGTAA 59.831 50.000 19.31 0.00 0.00 2.24
944 1097 4.396522 ACGACCTAGCTAGTAATACCAGG 58.603 47.826 19.31 5.93 0.00 4.45
949 1111 2.240279 AGCTAGTAATACCAGGAGCGG 58.760 52.381 0.00 0.00 35.09 5.52
952 1114 2.456073 AGTAATACCAGGAGCGGTCT 57.544 50.000 15.18 0.00 40.67 3.85
956 1118 1.384989 ATACCAGGAGCGGTCTGTCG 61.385 60.000 15.18 2.53 40.67 4.35
964 1126 1.300697 GCGGTCTGTCGGTGTTTCT 60.301 57.895 0.00 0.00 0.00 2.52
976 1142 1.001706 GGTGTTTCTTTGTCGGAAGCC 60.002 52.381 0.00 0.00 0.00 4.35
978 1144 2.293399 GTGTTTCTTTGTCGGAAGCCAT 59.707 45.455 0.00 0.00 0.00 4.40
986 1152 1.680989 TCGGAAGCCATCTCCACGA 60.681 57.895 0.00 0.00 0.00 4.35
987 1153 1.227089 CGGAAGCCATCTCCACGAG 60.227 63.158 0.00 0.00 0.00 4.18
991 1160 2.842394 AAGCCATCTCCACGAGCGTG 62.842 60.000 15.51 15.51 45.02 5.34
1614 1788 2.287915 CCAACACACCAGTTTTCTCTCG 59.712 50.000 0.00 0.00 0.00 4.04
1688 1862 7.891183 AATACTATTATCATCCGCACAGAAC 57.109 36.000 0.00 0.00 0.00 3.01
1719 1893 5.402398 GGACATAATGGCAAAGTCTGTTTC 58.598 41.667 0.00 0.00 0.00 2.78
1722 1896 6.449698 ACATAATGGCAAAGTCTGTTTCAAG 58.550 36.000 0.00 0.00 0.00 3.02
1740 1914 4.318332 TCAAGCCATGTCTTTGTAGTGAG 58.682 43.478 0.00 0.00 0.00 3.51
1760 1934 5.925397 GTGAGCTAGTGATAATCTGACATGG 59.075 44.000 0.00 0.00 0.00 3.66
1774 1948 2.026915 TGACATGGACACCAATCTCCTG 60.027 50.000 0.00 0.00 36.95 3.86
1796 1970 4.816385 TGATCCGTGAAATCAGGATAAAGC 59.184 41.667 11.76 4.26 44.13 3.51
1824 1998 7.696035 TGTCAAAAACACGATTATATCATGTGC 59.304 33.333 0.00 0.00 35.66 4.57
1857 2107 5.879223 ACATTCTTATCTGACAAGCTTGGAG 59.121 40.000 29.18 22.74 0.00 3.86
1876 2126 0.618458 GTGTAAGGGCATCTCCACCA 59.382 55.000 0.00 0.00 36.21 4.17
1886 2136 1.069204 CATCTCCACCACCGTCCATAG 59.931 57.143 0.00 0.00 0.00 2.23
2243 2493 2.249844 TCGTCCCTGTTTTGTTCTCC 57.750 50.000 0.00 0.00 0.00 3.71
2246 2496 3.581332 TCGTCCCTGTTTTGTTCTCCTAT 59.419 43.478 0.00 0.00 0.00 2.57
2250 2500 6.258068 CGTCCCTGTTTTGTTCTCCTATATTC 59.742 42.308 0.00 0.00 0.00 1.75
2251 2501 7.339482 GTCCCTGTTTTGTTCTCCTATATTCT 58.661 38.462 0.00 0.00 0.00 2.40
2264 2514 9.601217 TTCTCCTATATTCTGAGCACTTAAAAC 57.399 33.333 0.00 0.00 0.00 2.43
2301 2551 9.760077 AAATATTATCTTTCGTTCATAGTCCGT 57.240 29.630 0.00 0.00 0.00 4.69
2303 2553 6.880822 TTATCTTTCGTTCATAGTCCGTTG 57.119 37.500 0.00 0.00 0.00 4.10
2304 2554 4.247267 TCTTTCGTTCATAGTCCGTTGT 57.753 40.909 0.00 0.00 0.00 3.32
2315 2566 6.781138 TCATAGTCCGTTGTGCAAATATTTC 58.219 36.000 0.00 0.00 0.00 2.17
2319 2570 7.151999 AGTCCGTTGTGCAAATATTTCAATA 57.848 32.000 0.00 0.00 0.00 1.90
2443 2705 2.605366 GCTCGACCAGATCTAAAGTTGC 59.395 50.000 0.00 0.00 0.00 4.17
2444 2706 3.677424 GCTCGACCAGATCTAAAGTTGCT 60.677 47.826 0.00 0.00 0.00 3.91
2445 2707 4.109050 CTCGACCAGATCTAAAGTTGCTC 58.891 47.826 0.00 0.00 0.00 4.26
2446 2708 3.509967 TCGACCAGATCTAAAGTTGCTCA 59.490 43.478 0.00 0.00 0.00 4.26
2447 2709 4.160439 TCGACCAGATCTAAAGTTGCTCAT 59.840 41.667 0.00 0.00 0.00 2.90
2448 2710 4.269603 CGACCAGATCTAAAGTTGCTCATG 59.730 45.833 0.00 0.00 0.00 3.07
2449 2711 5.423015 GACCAGATCTAAAGTTGCTCATGA 58.577 41.667 0.00 0.00 0.00 3.07
2450 2712 5.426504 ACCAGATCTAAAGTTGCTCATGAG 58.573 41.667 18.84 18.84 0.00 2.90
2451 2713 5.046014 ACCAGATCTAAAGTTGCTCATGAGT 60.046 40.000 23.38 5.58 0.00 3.41
2452 2714 5.879223 CCAGATCTAAAGTTGCTCATGAGTT 59.121 40.000 23.38 11.98 0.00 3.01
2453 2715 6.183360 CCAGATCTAAAGTTGCTCATGAGTTG 60.183 42.308 23.38 4.44 0.00 3.16
2462 2724 1.592081 GCTCATGAGTTGCTCGATGAC 59.408 52.381 23.38 0.00 32.35 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.574516 CCCTACAGAAATATAAAATTAGGCACT 57.425 33.333 0.00 0.00 46.37 4.40
66 67 5.701290 AGAAGTGGTTACTGCACAACTATTC 59.299 40.000 6.43 7.87 37.19 1.75
106 107 5.076873 TCCTTTTTAACATCAAGGAGGGTG 58.923 41.667 0.00 0.00 41.02 4.61
142 143 1.935199 AGTGTTTTGTGCAATGCAAGC 59.065 42.857 10.44 7.49 41.47 4.01
193 194 2.919228 AGTCATGAAGTTATTCCCCGC 58.081 47.619 0.00 0.00 34.28 6.13
197 198 5.490213 CGCGTTAAGTCATGAAGTTATTCC 58.510 41.667 0.00 0.00 34.28 3.01
247 252 2.470821 GCCACCGTCATATCAGTACAC 58.529 52.381 0.00 0.00 0.00 2.90
252 257 1.300931 CCCGCCACCGTCATATCAG 60.301 63.158 0.00 0.00 0.00 2.90
271 276 5.344207 AGTGAAAATAGCAAGACACGAAC 57.656 39.130 0.00 0.00 34.16 3.95
306 311 3.222173 ACTTGACAATGGTGGCAACTA 57.778 42.857 3.27 0.00 46.12 2.24
335 348 9.730705 TGGACAATGATGGCAATTTTAATAAAA 57.269 25.926 0.25 0.25 35.69 1.52
336 349 9.902684 ATGGACAATGATGGCAATTTTAATAAA 57.097 25.926 0.00 0.00 35.69 1.40
337 350 9.902684 AATGGACAATGATGGCAATTTTAATAA 57.097 25.926 0.00 0.00 34.26 1.40
338 351 9.902684 AAATGGACAATGATGGCAATTTTAATA 57.097 25.926 0.00 0.00 44.39 0.98
339 352 8.810990 AAATGGACAATGATGGCAATTTTAAT 57.189 26.923 0.00 0.00 44.39 1.40
352 365 8.838365 CATTTTTCTTTGGAAAATGGACAATGA 58.162 29.630 13.43 0.00 46.57 2.57
379 399 3.190535 GCCGTTAATTCTGACAATGGTGT 59.809 43.478 6.16 0.00 42.10 4.16
457 477 2.668550 AGCAACCGCGGGAAAGAC 60.669 61.111 31.76 12.33 45.49 3.01
583 603 5.160641 CCGGAGTTGATACCATTTGTTTTG 58.839 41.667 0.00 0.00 0.00 2.44
692 721 3.838565 TGTATGTGATGTGTTTTGGGGT 58.161 40.909 0.00 0.00 0.00 4.95
794 835 0.823356 GAGGTGCCTGCAGGTTTTGA 60.823 55.000 32.81 10.23 37.57 2.69
795 836 1.662044 GAGGTGCCTGCAGGTTTTG 59.338 57.895 32.81 8.64 37.57 2.44
796 837 1.898574 CGAGGTGCCTGCAGGTTTT 60.899 57.895 32.81 16.68 37.57 2.43
797 838 2.281761 CGAGGTGCCTGCAGGTTT 60.282 61.111 32.81 16.33 37.57 3.27
800 841 3.699894 ACTCGAGGTGCCTGCAGG 61.700 66.667 29.34 29.34 38.53 4.85
801 842 2.433838 CACTCGAGGTGCCTGCAG 60.434 66.667 18.41 6.78 39.22 4.41
937 985 1.384989 CGACAGACCGCTCCTGGTAT 61.385 60.000 0.00 0.00 44.01 2.73
944 1097 1.282930 GAAACACCGACAGACCGCTC 61.283 60.000 0.00 0.00 0.00 5.03
949 1111 2.034001 CGACAAAGAAACACCGACAGAC 60.034 50.000 0.00 0.00 0.00 3.51
952 1114 1.134759 TCCGACAAAGAAACACCGACA 60.135 47.619 0.00 0.00 0.00 4.35
956 1118 1.001706 GGCTTCCGACAAAGAAACACC 60.002 52.381 0.00 0.00 0.00 4.16
964 1126 0.690192 TGGAGATGGCTTCCGACAAA 59.310 50.000 0.00 0.00 0.00 2.83
976 1142 3.250323 CGCACGCTCGTGGAGATG 61.250 66.667 21.72 0.00 45.49 2.90
986 1152 4.747529 TCATCTGCTGCGCACGCT 62.748 61.111 25.02 9.04 42.51 5.07
987 1153 4.511443 GTCATCTGCTGCGCACGC 62.511 66.667 20.37 20.37 42.35 5.34
991 1160 2.699809 CTTCGTCATCTGCTGCGC 59.300 61.111 0.00 0.00 0.00 6.09
1086 1255 2.874780 CGCACGTAGAGGTCGCAC 60.875 66.667 0.00 0.00 0.00 5.34
1267 1436 3.983494 ATCCGCCGGCTGATCGAG 61.983 66.667 25.78 7.91 0.00 4.04
1268 1437 4.284860 CATCCGCCGGCTGATCGA 62.285 66.667 28.17 13.93 0.00 3.59
1353 1522 2.842462 ATGGTCGCCATAGCCGGA 60.842 61.111 5.05 0.00 43.19 5.14
1510 1680 1.514228 GCACGCGTCAAGATCGAGA 60.514 57.895 9.86 0.00 32.94 4.04
1614 1788 3.367932 TCATGAAGAAATCACGAGAACGC 59.632 43.478 0.00 0.00 41.93 4.84
1688 1862 2.493035 TGCCATTATGTCCGCACTATG 58.507 47.619 0.00 0.00 0.00 2.23
1696 1870 5.048083 TGAAACAGACTTTGCCATTATGTCC 60.048 40.000 0.00 0.00 0.00 4.02
1719 1893 3.120060 GCTCACTACAAAGACATGGCTTG 60.120 47.826 16.33 11.63 0.00 4.01
1722 1896 2.704572 AGCTCACTACAAAGACATGGC 58.295 47.619 0.00 0.00 0.00 4.40
1740 1914 5.694006 GTGTCCATGTCAGATTATCACTAGC 59.306 44.000 0.00 0.00 0.00 3.42
1760 1934 1.482593 ACGGATCAGGAGATTGGTGTC 59.517 52.381 0.00 0.00 33.72 3.67
1774 1948 5.059833 AGCTTTATCCTGATTTCACGGATC 58.940 41.667 12.08 0.00 36.25 3.36
1824 1998 6.614160 TGTCAGATAAGAATGTTTGCACATG 58.386 36.000 0.00 0.00 43.34 3.21
1857 2107 0.618458 TGGTGGAGATGCCCTTACAC 59.382 55.000 0.00 0.00 34.97 2.90
2207 2457 7.173218 ACAGGGACGAACATTGCTATATAATTG 59.827 37.037 0.00 0.00 0.00 2.32
2208 2458 7.224297 ACAGGGACGAACATTGCTATATAATT 58.776 34.615 0.00 0.00 0.00 1.40
2209 2459 6.769512 ACAGGGACGAACATTGCTATATAAT 58.230 36.000 0.00 0.00 0.00 1.28
2210 2460 6.169557 ACAGGGACGAACATTGCTATATAA 57.830 37.500 0.00 0.00 0.00 0.98
2215 2465 2.851263 AACAGGGACGAACATTGCTA 57.149 45.000 0.00 0.00 0.00 3.49
2217 2467 2.223711 ACAAAACAGGGACGAACATTGC 60.224 45.455 0.00 0.00 0.00 3.56
2229 2479 7.011857 GCTCAGAATATAGGAGAACAAAACAGG 59.988 40.741 0.00 0.00 0.00 4.00
2281 2531 5.803461 CACAACGGACTATGAACGAAAGATA 59.197 40.000 0.00 0.00 0.00 1.98
2291 2541 6.372937 TGAAATATTTGCACAACGGACTATGA 59.627 34.615 5.17 0.00 0.00 2.15
2296 2546 6.804295 TGTATTGAAATATTTGCACAACGGAC 59.196 34.615 5.17 4.63 0.00 4.79
2299 2549 8.001358 TGTTGTATTGAAATATTTGCACAACG 57.999 30.769 22.71 0.00 37.23 4.10
2420 2671 4.245660 CAACTTTAGATCTGGTCGAGCAA 58.754 43.478 19.16 10.04 0.00 3.91
2426 2677 5.423015 TCATGAGCAACTTTAGATCTGGTC 58.577 41.667 5.18 4.08 36.95 4.02
2443 2705 1.851053 CGTCATCGAGCAACTCATGAG 59.149 52.381 21.37 21.37 39.71 2.90
2444 2706 1.472480 TCGTCATCGAGCAACTCATGA 59.528 47.619 0.00 0.00 41.35 3.07
2445 2707 1.913317 TCGTCATCGAGCAACTCATG 58.087 50.000 0.00 0.00 41.35 3.07
2446 2708 2.654749 TTCGTCATCGAGCAACTCAT 57.345 45.000 0.00 0.00 46.81 2.90
2447 2709 2.164422 AGATTCGTCATCGAGCAACTCA 59.836 45.455 0.00 0.00 46.81 3.41
2448 2710 2.533535 CAGATTCGTCATCGAGCAACTC 59.466 50.000 0.00 0.00 46.81 3.01
2449 2711 2.094494 ACAGATTCGTCATCGAGCAACT 60.094 45.455 0.00 0.00 46.81 3.16
2450 2712 2.263077 ACAGATTCGTCATCGAGCAAC 58.737 47.619 0.00 0.00 46.81 4.17
2451 2713 2.654749 ACAGATTCGTCATCGAGCAA 57.345 45.000 0.00 0.00 46.81 3.91
2452 2714 2.094752 TCAACAGATTCGTCATCGAGCA 60.095 45.455 0.00 0.00 46.81 4.26
2453 2715 2.530177 TCAACAGATTCGTCATCGAGC 58.470 47.619 0.00 0.00 46.81 5.03
2462 2724 4.359971 TCCAAATGCATCAACAGATTCG 57.640 40.909 0.00 0.00 0.00 3.34
2494 2756 0.827507 AGCAGAACCCGGCAACATTT 60.828 50.000 0.00 0.00 35.90 2.32
2497 2759 1.454847 AAAGCAGAACCCGGCAACA 60.455 52.632 0.00 0.00 35.90 3.33
2498 2760 1.007387 CAAAGCAGAACCCGGCAAC 60.007 57.895 0.00 0.00 35.90 4.17
2502 2764 0.537371 ACTTCCAAAGCAGAACCCGG 60.537 55.000 0.00 0.00 0.00 5.73
2503 2765 3.021451 ACTTCCAAAGCAGAACCCG 57.979 52.632 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.