Multiple sequence alignment - TraesCS3B01G336200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G336200 chr3B 100.000 2666 0 0 1 2666 542547082 542544417 0.000000e+00 4924.0
1 TraesCS3B01G336200 chr3D 93.232 2098 112 15 159 2238 415718037 415715952 0.000000e+00 3061.0
2 TraesCS3B01G336200 chr3A 92.331 1617 88 10 1064 2656 534383154 534384758 0.000000e+00 2266.0
3 TraesCS3B01G336200 chr3A 92.881 295 14 4 781 1068 534381002 534381296 3.170000e-114 422.0
4 TraesCS3B01G336200 chr3A 85.070 355 36 5 310 657 534380491 534380835 1.960000e-91 346.0
5 TraesCS3B01G336200 chr1D 80.645 93 11 5 372 463 494455394 494455480 6.160000e-07 65.8
6 TraesCS3B01G336200 chr5D 79.121 91 12 5 372 461 549551551 549551467 3.710000e-04 56.5
7 TraesCS3B01G336200 chr5B 94.444 36 2 0 365 400 688718099 688718134 3.710000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G336200 chr3B 542544417 542547082 2665 True 4924.000000 4924 100.000 1 2666 1 chr3B.!!$R1 2665
1 TraesCS3B01G336200 chr3D 415715952 415718037 2085 True 3061.000000 3061 93.232 159 2238 1 chr3D.!!$R1 2079
2 TraesCS3B01G336200 chr3A 534380491 534384758 4267 False 1011.333333 2266 90.094 310 2656 3 chr3A.!!$F1 2346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.031449 GCCTTCGCTCTGGCTAGTAG 59.969 60.0 0.00 0.0 45.26 2.57 F
99 100 0.108615 CTCGGAAGAATCACGGTGCT 60.109 55.0 2.51 0.0 41.32 4.40 F
273 281 0.174617 TCAATGGCGACGACTGCATA 59.825 50.0 0.65 0.0 0.00 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1197 3141 1.243342 CCTCGACATTGGCCTTGCAA 61.243 55.000 3.32 0.0 0.00 4.08 R
1209 3153 1.679305 GAGCCTGTCCTCCTCGACA 60.679 63.158 0.00 0.0 40.44 4.35 R
1686 3630 1.860326 GAAATGCAAGCACACCAACAC 59.140 47.619 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.680786 CCAGTGACGGTGAGGCGA 61.681 66.667 0.00 0.00 0.00 5.54
18 19 2.338620 CAGTGACGGTGAGGCGAA 59.661 61.111 0.00 0.00 0.00 4.70
19 20 1.079819 CAGTGACGGTGAGGCGAAT 60.080 57.895 0.00 0.00 0.00 3.34
20 21 1.078759 CAGTGACGGTGAGGCGAATC 61.079 60.000 0.00 0.00 0.00 2.52
21 22 1.810030 GTGACGGTGAGGCGAATCC 60.810 63.158 0.00 0.00 0.00 3.01
30 31 2.044946 GGCGAATCCTGGTGCCTT 60.045 61.111 12.45 0.00 44.16 4.35
31 32 2.115291 GGCGAATCCTGGTGCCTTC 61.115 63.158 12.45 3.89 44.16 3.46
32 33 2.464459 GCGAATCCTGGTGCCTTCG 61.464 63.158 14.40 14.40 42.41 3.79
33 34 2.464459 CGAATCCTGGTGCCTTCGC 61.464 63.158 0.00 0.00 34.78 4.70
34 35 1.078143 GAATCCTGGTGCCTTCGCT 60.078 57.895 0.00 0.00 35.36 4.93
35 36 1.078143 AATCCTGGTGCCTTCGCTC 60.078 57.895 0.00 0.00 35.36 5.03
36 37 1.557269 AATCCTGGTGCCTTCGCTCT 61.557 55.000 0.00 0.00 35.36 4.09
37 38 2.249413 ATCCTGGTGCCTTCGCTCTG 62.249 60.000 0.00 0.00 35.36 3.35
38 39 2.435586 CTGGTGCCTTCGCTCTGG 60.436 66.667 0.00 0.00 35.36 3.86
43 44 2.896443 GCCTTCGCTCTGGCTAGT 59.104 61.111 0.00 0.00 45.26 2.57
44 45 2.116383 GCCTTCGCTCTGGCTAGTA 58.884 57.895 0.00 0.00 45.26 1.82
45 46 0.031449 GCCTTCGCTCTGGCTAGTAG 59.969 60.000 0.00 0.00 45.26 2.57
46 47 1.394618 CCTTCGCTCTGGCTAGTAGT 58.605 55.000 0.00 0.00 36.09 2.73
47 48 1.751924 CCTTCGCTCTGGCTAGTAGTT 59.248 52.381 0.00 0.00 36.09 2.24
48 49 2.166664 CCTTCGCTCTGGCTAGTAGTTT 59.833 50.000 0.00 0.00 36.09 2.66
49 50 3.440228 CTTCGCTCTGGCTAGTAGTTTC 58.560 50.000 0.00 0.00 36.09 2.78
50 51 1.400846 TCGCTCTGGCTAGTAGTTTCG 59.599 52.381 0.00 0.00 36.09 3.46
51 52 1.534175 CGCTCTGGCTAGTAGTTTCGG 60.534 57.143 0.00 0.00 36.09 4.30
52 53 1.477295 GCTCTGGCTAGTAGTTTCGGT 59.523 52.381 0.00 0.00 35.22 4.69
53 54 2.094130 GCTCTGGCTAGTAGTTTCGGTT 60.094 50.000 0.00 0.00 35.22 4.44
54 55 3.129988 GCTCTGGCTAGTAGTTTCGGTTA 59.870 47.826 0.00 0.00 35.22 2.85
55 56 4.734108 GCTCTGGCTAGTAGTTTCGGTTAG 60.734 50.000 0.00 0.00 35.22 2.34
56 57 4.338879 TCTGGCTAGTAGTTTCGGTTAGT 58.661 43.478 0.00 0.00 0.00 2.24
57 58 4.768968 TCTGGCTAGTAGTTTCGGTTAGTT 59.231 41.667 0.00 0.00 0.00 2.24
58 59 5.244626 TCTGGCTAGTAGTTTCGGTTAGTTT 59.755 40.000 0.00 0.00 0.00 2.66
59 60 5.857268 TGGCTAGTAGTTTCGGTTAGTTTT 58.143 37.500 0.00 0.00 0.00 2.43
60 61 6.290605 TGGCTAGTAGTTTCGGTTAGTTTTT 58.709 36.000 0.00 0.00 0.00 1.94
85 86 4.357947 GCAGGTGCGACACTCGGA 62.358 66.667 9.31 0.00 40.84 4.55
86 87 2.338620 CAGGTGCGACACTCGGAA 59.661 61.111 9.31 0.00 42.99 4.30
87 88 1.734477 CAGGTGCGACACTCGGAAG 60.734 63.158 9.31 0.00 42.99 3.46
88 89 1.901948 AGGTGCGACACTCGGAAGA 60.902 57.895 9.31 0.00 42.99 2.87
89 90 1.006571 GGTGCGACACTCGGAAGAA 60.007 57.895 9.31 0.00 42.99 2.52
90 91 0.389948 GGTGCGACACTCGGAAGAAT 60.390 55.000 9.31 0.00 42.99 2.40
91 92 0.992802 GTGCGACACTCGGAAGAATC 59.007 55.000 3.20 0.00 42.99 2.52
92 93 0.601057 TGCGACACTCGGAAGAATCA 59.399 50.000 0.00 0.00 37.25 2.57
93 94 0.992802 GCGACACTCGGAAGAATCAC 59.007 55.000 0.00 0.00 40.84 3.06
94 95 1.260206 CGACACTCGGAAGAATCACG 58.740 55.000 0.00 0.00 41.32 4.35
95 96 1.630148 GACACTCGGAAGAATCACGG 58.370 55.000 0.00 0.00 41.32 4.94
96 97 0.966920 ACACTCGGAAGAATCACGGT 59.033 50.000 0.00 0.00 41.32 4.83
97 98 1.336887 ACACTCGGAAGAATCACGGTG 60.337 52.381 0.56 0.56 41.32 4.94
98 99 0.389948 ACTCGGAAGAATCACGGTGC 60.390 55.000 2.51 0.00 41.32 5.01
99 100 0.108615 CTCGGAAGAATCACGGTGCT 60.109 55.000 2.51 0.00 41.32 4.40
100 101 0.320374 TCGGAAGAATCACGGTGCTT 59.680 50.000 2.51 0.00 37.03 3.91
101 102 0.721718 CGGAAGAATCACGGTGCTTC 59.278 55.000 15.03 15.03 36.81 3.86
102 103 1.673033 CGGAAGAATCACGGTGCTTCT 60.673 52.381 18.66 18.66 34.66 2.85
103 104 2.427506 GGAAGAATCACGGTGCTTCTT 58.572 47.619 29.64 29.64 43.13 2.52
104 105 3.731274 GAAGAATCACGGTGCTTCTTC 57.269 47.619 33.55 33.55 45.89 2.87
105 106 1.714794 AGAATCACGGTGCTTCTTCG 58.285 50.000 18.66 0.00 29.47 3.79
106 107 1.272490 AGAATCACGGTGCTTCTTCGA 59.728 47.619 18.66 0.00 29.47 3.71
107 108 1.656095 GAATCACGGTGCTTCTTCGAG 59.344 52.381 15.43 0.00 0.00 4.04
108 109 0.603569 ATCACGGTGCTTCTTCGAGT 59.396 50.000 2.51 0.00 0.00 4.18
109 110 1.241165 TCACGGTGCTTCTTCGAGTA 58.759 50.000 2.51 0.00 0.00 2.59
110 111 1.816835 TCACGGTGCTTCTTCGAGTAT 59.183 47.619 2.51 0.00 0.00 2.12
111 112 3.011818 TCACGGTGCTTCTTCGAGTATA 58.988 45.455 2.51 0.00 0.00 1.47
112 113 3.630769 TCACGGTGCTTCTTCGAGTATAT 59.369 43.478 2.51 0.00 0.00 0.86
113 114 3.975670 CACGGTGCTTCTTCGAGTATATC 59.024 47.826 0.00 0.00 0.00 1.63
114 115 3.884091 ACGGTGCTTCTTCGAGTATATCT 59.116 43.478 0.00 0.00 0.00 1.98
115 116 4.338682 ACGGTGCTTCTTCGAGTATATCTT 59.661 41.667 0.00 0.00 0.00 2.40
116 117 4.912766 CGGTGCTTCTTCGAGTATATCTTC 59.087 45.833 0.00 0.00 0.00 2.87
117 118 5.224135 GGTGCTTCTTCGAGTATATCTTCC 58.776 45.833 0.00 0.00 0.00 3.46
118 119 4.912766 GTGCTTCTTCGAGTATATCTTCCG 59.087 45.833 0.00 0.00 0.00 4.30
119 120 4.023107 TGCTTCTTCGAGTATATCTTCCGG 60.023 45.833 0.00 0.00 0.00 5.14
120 121 4.616373 GCTTCTTCGAGTATATCTTCCGGG 60.616 50.000 0.00 0.00 0.00 5.73
121 122 2.818432 TCTTCGAGTATATCTTCCGGGC 59.182 50.000 0.00 0.00 0.00 6.13
122 123 2.581216 TCGAGTATATCTTCCGGGCT 57.419 50.000 0.00 0.00 0.00 5.19
123 124 2.434428 TCGAGTATATCTTCCGGGCTC 58.566 52.381 0.00 0.00 0.00 4.70
124 125 1.473278 CGAGTATATCTTCCGGGCTCC 59.527 57.143 0.00 0.00 0.00 4.70
135 136 4.787871 GGGCTCCGATCCAATCAG 57.212 61.111 0.00 0.00 0.00 2.90
136 137 1.072159 GGGCTCCGATCCAATCAGG 59.928 63.158 0.00 0.00 39.47 3.86
148 149 4.590850 TCCAATCAGGACATAGTCGATG 57.409 45.455 0.00 0.00 43.07 3.84
149 150 3.321968 TCCAATCAGGACATAGTCGATGG 59.678 47.826 0.00 0.00 43.07 3.51
150 151 3.321968 CCAATCAGGACATAGTCGATGGA 59.678 47.826 0.00 0.00 40.18 3.41
151 152 4.554292 CAATCAGGACATAGTCGATGGAG 58.446 47.826 0.00 0.00 40.18 3.86
152 153 3.577805 TCAGGACATAGTCGATGGAGA 57.422 47.619 0.00 0.00 40.18 3.71
153 154 3.215151 TCAGGACATAGTCGATGGAGAC 58.785 50.000 0.00 0.00 40.18 3.36
154 155 2.294791 CAGGACATAGTCGATGGAGACC 59.705 54.545 0.00 0.00 41.83 3.85
155 156 1.614413 GGACATAGTCGATGGAGACCC 59.386 57.143 0.00 0.00 41.83 4.46
156 157 1.267261 GACATAGTCGATGGAGACCCG 59.733 57.143 0.00 0.00 41.83 5.28
157 158 0.598562 CATAGTCGATGGAGACCCGG 59.401 60.000 0.00 0.00 41.83 5.73
162 163 2.728817 GATGGAGACCCGGCGTAG 59.271 66.667 6.01 0.00 34.29 3.51
166 167 2.493501 GAGACCCGGCGTAGGTTC 59.506 66.667 9.21 5.75 37.88 3.62
171 172 3.771160 CCGGCGTAGGTTCCTGCT 61.771 66.667 6.01 0.00 0.00 4.24
178 179 1.546476 CGTAGGTTCCTGCTGTCTTCT 59.454 52.381 1.12 0.00 0.00 2.85
183 184 0.401738 TTCCTGCTGTCTTCTTGGGG 59.598 55.000 0.00 0.00 0.00 4.96
187 188 2.747855 CTGTCTTCTTGGGGCGGC 60.748 66.667 0.00 0.00 0.00 6.53
210 211 0.723981 GTGAGGCTTTCTCGTCATGC 59.276 55.000 0.00 0.00 45.32 4.06
211 212 0.737367 TGAGGCTTTCTCGTCATGCG 60.737 55.000 3.55 3.55 45.32 4.73
216 217 1.617755 CTTTCTCGTCATGCGTGCGT 61.618 55.000 17.92 0.00 42.13 5.24
218 219 2.741116 TTCTCGTCATGCGTGCGTGA 62.741 55.000 12.50 12.50 42.13 4.35
235 236 2.338500 GTGACGGAGAGATTTGGTGTC 58.662 52.381 0.00 0.00 0.00 3.67
238 245 3.254892 GACGGAGAGATTTGGTGTCTTC 58.745 50.000 0.00 0.00 29.11 2.87
243 250 5.115480 GGAGAGATTTGGTGTCTTCAGATC 58.885 45.833 0.00 0.00 29.11 2.75
269 277 1.148310 AAGTTCAATGGCGACGACTG 58.852 50.000 0.65 0.00 0.00 3.51
271 279 1.301322 TTCAATGGCGACGACTGCA 60.301 52.632 0.65 0.00 0.00 4.41
272 280 0.673333 TTCAATGGCGACGACTGCAT 60.673 50.000 0.65 0.00 0.00 3.96
273 281 0.174617 TCAATGGCGACGACTGCATA 59.825 50.000 0.65 0.00 0.00 3.14
277 285 0.741915 TGGCGACGACTGCATATACA 59.258 50.000 0.65 0.00 0.00 2.29
278 286 1.339929 TGGCGACGACTGCATATACAT 59.660 47.619 0.65 0.00 0.00 2.29
280 288 1.721389 GCGACGACTGCATATACATGG 59.279 52.381 0.00 0.00 32.36 3.66
281 289 1.721389 CGACGACTGCATATACATGGC 59.279 52.381 0.00 0.00 32.36 4.40
290 298 2.810400 GCATATACATGGCGTTGGTCCT 60.810 50.000 0.00 0.00 32.36 3.85
294 302 0.981183 ACATGGCGTTGGTCCTTAGA 59.019 50.000 0.00 0.00 0.00 2.10
300 308 1.608283 GCGTTGGTCCTTAGAAGCACT 60.608 52.381 0.00 0.00 0.00 4.40
314 322 1.221414 AGCACTTGCACGAAGACTTC 58.779 50.000 5.03 5.03 45.16 3.01
318 326 3.390135 CACTTGCACGAAGACTTCCTAA 58.610 45.455 9.63 0.00 35.42 2.69
328 336 5.035443 CGAAGACTTCCTAACTGTTATCGG 58.965 45.833 9.63 0.32 0.00 4.18
329 337 5.392811 CGAAGACTTCCTAACTGTTATCGGT 60.393 44.000 9.63 0.00 34.21 4.69
334 342 2.429610 TCCTAACTGTTATCGGTGGCTC 59.570 50.000 0.00 0.00 32.95 4.70
340 348 2.093890 TGTTATCGGTGGCTCGTTCTA 58.906 47.619 1.40 0.00 0.00 2.10
349 357 1.684450 TGGCTCGTTCTAATGGCGATA 59.316 47.619 0.00 0.00 34.04 2.92
360 368 1.112113 ATGGCGATAGTTGTCGTCCT 58.888 50.000 0.57 0.00 45.08 3.85
385 393 7.281098 TGTAGTCTAGAGACCTCGATGTAATT 58.719 38.462 6.05 0.00 45.85 1.40
387 395 7.266922 AGTCTAGAGACCTCGATGTAATTTC 57.733 40.000 6.05 0.00 45.85 2.17
481 496 1.388093 CTCGTCTGCTCGTGTTGATTG 59.612 52.381 0.00 0.00 0.00 2.67
486 501 1.462283 CTGCTCGTGTTGATTGTCCAG 59.538 52.381 0.00 0.00 0.00 3.86
514 529 4.503910 CTCCTTCCACATGAAACGATACA 58.496 43.478 0.00 0.00 31.06 2.29
540 555 2.188994 CCTGCACTAGGCTGCCTC 59.811 66.667 27.16 11.55 45.15 4.70
541 556 2.663075 CCTGCACTAGGCTGCCTCA 61.663 63.158 27.16 15.88 45.15 3.86
716 778 4.625311 GCACGGATTTGGGTAATTTTCTTG 59.375 41.667 0.00 0.00 0.00 3.02
717 779 5.565834 GCACGGATTTGGGTAATTTTCTTGA 60.566 40.000 0.00 0.00 0.00 3.02
718 780 5.861787 CACGGATTTGGGTAATTTTCTTGAC 59.138 40.000 0.00 0.00 0.00 3.18
719 781 5.536916 ACGGATTTGGGTAATTTTCTTGACA 59.463 36.000 0.00 0.00 0.00 3.58
720 782 6.041069 ACGGATTTGGGTAATTTTCTTGACAA 59.959 34.615 0.00 0.00 0.00 3.18
721 783 7.096551 CGGATTTGGGTAATTTTCTTGACAAT 58.903 34.615 0.00 0.00 0.00 2.71
722 784 7.602265 CGGATTTGGGTAATTTTCTTGACAATT 59.398 33.333 0.00 1.27 0.00 2.32
763 825 0.904865 TGTGTGGGCTCCTCTTCGAT 60.905 55.000 0.00 0.00 0.00 3.59
830 905 0.727398 GCTGGATTTTCGTTCCTCCG 59.273 55.000 0.00 0.00 34.17 4.63
843 922 2.582498 CTCCGTCGCCGATGGAAC 60.582 66.667 26.72 0.00 45.70 3.62
868 947 5.007626 CAGAGAAATTAAATGCCGGATCGAA 59.992 40.000 5.05 0.00 0.00 3.71
951 1030 0.179037 TCGGATACTCGGATCACGGT 60.179 55.000 0.00 0.00 44.45 4.83
1209 3153 2.582493 CCCCGTTTGCAAGGCCAAT 61.582 57.895 5.01 0.00 0.00 3.16
1284 3228 4.544689 CGGCCGAGCTCGTCTGAG 62.545 72.222 32.41 18.79 45.49 3.35
1305 3249 3.531207 CCGCAGATCCCGAGCAGA 61.531 66.667 5.07 0.00 0.00 4.26
1395 3339 4.263572 CCGTGGTTCCCTGGTGCA 62.264 66.667 0.00 0.00 0.00 4.57
1431 3375 0.325602 GTCGGTGGGGGAATTACACA 59.674 55.000 0.00 0.00 36.87 3.72
1653 3597 2.094234 TGTGCTTGTCATCGCTAGCTTA 60.094 45.455 13.93 0.56 37.92 3.09
1686 3630 0.322098 TTATGTGTTGTGGAGGGCCG 60.322 55.000 0.00 0.00 36.79 6.13
1782 3727 3.582647 TGGAGAGCAGTAGAATGACCAAA 59.417 43.478 0.00 0.00 0.00 3.28
1795 3740 7.537596 AGAATGACCAAATTTCCATTGTGTA 57.462 32.000 12.16 0.00 30.29 2.90
1796 3741 7.961351 AGAATGACCAAATTTCCATTGTGTAA 58.039 30.769 12.16 0.00 30.29 2.41
1801 3746 8.091449 TGACCAAATTTCCATTGTGTAATAACC 58.909 33.333 0.00 0.00 0.00 2.85
1841 3786 2.420022 GTGTCCCCAGTGAATTTGATCG 59.580 50.000 0.00 0.00 0.00 3.69
1907 3852 4.704540 TCACCATCCATATTTTCGTTTGCT 59.295 37.500 0.00 0.00 0.00 3.91
1915 3860 7.601856 TCCATATTTTCGTTTGCTTTCTTGAT 58.398 30.769 0.00 0.00 0.00 2.57
1939 3884 1.398390 GTGATGGCTTCGCTACTTTGG 59.602 52.381 6.68 0.00 31.85 3.28
1972 3917 3.924686 GCAAACTGCATTTTCTGATCCTG 59.075 43.478 0.00 0.00 44.26 3.86
2018 3964 8.488651 AGGTAATTGTTAGTGGATTACTTTCG 57.511 34.615 0.00 0.00 40.89 3.46
2065 4012 4.797471 TCCAGAAATTTGTTGCATTCTCG 58.203 39.130 0.00 0.00 30.01 4.04
2178 4125 8.722480 TCCTTCATACATTACAGATGTTTCAG 57.278 34.615 0.00 0.00 33.76 3.02
2292 4239 1.292061 TCGTCAAAAACTGTCACCCG 58.708 50.000 0.00 0.00 0.00 5.28
2304 4251 1.822990 TGTCACCCGTTGGATCTAGAC 59.177 52.381 0.00 0.00 34.81 2.59
2316 4263 1.335496 GATCTAGACCGTGTGCCTCTC 59.665 57.143 0.00 0.00 0.00 3.20
2345 4292 3.711059 CTGGCATCTCACCCCCAGC 62.711 68.421 0.00 0.00 38.50 4.85
2401 4348 4.759183 GCTGATATTTCCCCAGATCAGTTC 59.241 45.833 11.27 0.00 44.69 3.01
2442 4389 9.070179 GGAAAGATACAAGGTTAGTTTGGTTTA 57.930 33.333 0.00 0.00 0.00 2.01
2445 4392 9.582648 AAGATACAAGGTTAGTTTGGTTTATGT 57.417 29.630 0.00 0.00 0.00 2.29
2456 4403 2.279741 TGGTTTATGTCATGAGCGCTC 58.720 47.619 30.42 30.42 0.00 5.03
2485 4451 0.328258 AACTAGGGGTTTGCTCGCAT 59.672 50.000 0.00 0.00 33.90 4.73
2487 4453 0.107703 CTAGGGGTTTGCTCGCATGA 60.108 55.000 0.00 0.00 0.00 3.07
2492 4458 1.014044 GGTTTGCTCGCATGAGACGA 61.014 55.000 0.00 0.00 45.57 4.20
2511 4477 8.023706 TGAGACGACAAACATCATATAGATAGC 58.976 37.037 0.00 0.00 34.43 2.97
2515 4481 8.793592 ACGACAAACATCATATAGATAGCTGTA 58.206 33.333 0.00 0.00 34.43 2.74
2534 4501 4.180817 TGTAGTAACATGCATGGAACGAG 58.819 43.478 29.41 3.95 0.00 4.18
2535 4502 2.009774 AGTAACATGCATGGAACGAGC 58.990 47.619 29.41 12.32 0.00 5.03
2580 4547 5.043732 TCCATGAGGGGTTTGGTATTACAAT 60.044 40.000 0.00 0.00 37.22 2.71
2591 4558 5.353394 TGGTATTACAATGAGGTGGAGAC 57.647 43.478 0.00 0.00 0.00 3.36
2609 4576 0.395686 ACGGATGCTGATGGAGATGG 59.604 55.000 0.00 0.00 0.00 3.51
2622 4589 0.460284 GAGATGGTTGATGCCGACGT 60.460 55.000 0.00 0.00 0.00 4.34
2627 4594 3.000819 TTGATGCCGACGTCCCCT 61.001 61.111 10.58 0.00 0.00 4.79
2629 4596 2.511600 GATGCCGACGTCCCCTTG 60.512 66.667 10.58 0.00 0.00 3.61
2630 4597 4.778143 ATGCCGACGTCCCCTTGC 62.778 66.667 10.58 5.90 0.00 4.01
2633 4600 4.308458 CCGACGTCCCCTTGCACA 62.308 66.667 10.58 0.00 0.00 4.57
2634 4601 2.280524 CGACGTCCCCTTGCACAA 60.281 61.111 10.58 0.00 0.00 3.33
2635 4602 2.604174 CGACGTCCCCTTGCACAAC 61.604 63.158 10.58 0.00 0.00 3.32
2644 4611 1.654137 CTTGCACAACGTGGCGAAC 60.654 57.895 0.00 0.00 33.64 3.95
2656 4623 2.247437 GGCGAACATGGCGATCTCC 61.247 63.158 13.44 0.00 0.00 3.71
2657 4624 1.227380 GCGAACATGGCGATCTCCT 60.227 57.895 13.44 0.00 0.00 3.69
2658 4625 1.218230 GCGAACATGGCGATCTCCTC 61.218 60.000 13.44 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.507110 ATTCGCCTCACCGTCACTGG 62.507 60.000 0.00 0.00 0.00 4.00
1 2 1.078759 GATTCGCCTCACCGTCACTG 61.079 60.000 0.00 0.00 0.00 3.66
2 3 1.215647 GATTCGCCTCACCGTCACT 59.784 57.895 0.00 0.00 0.00 3.41
3 4 1.810030 GGATTCGCCTCACCGTCAC 60.810 63.158 0.00 0.00 0.00 3.67
4 5 1.982395 AGGATTCGCCTCACCGTCA 60.982 57.895 0.00 0.00 46.97 4.35
5 6 1.519455 CAGGATTCGCCTCACCGTC 60.519 63.158 0.00 0.00 46.97 4.79
6 7 2.579201 CAGGATTCGCCTCACCGT 59.421 61.111 0.00 0.00 46.97 4.83
7 8 2.202932 CCAGGATTCGCCTCACCG 60.203 66.667 0.00 0.00 46.97 4.94
8 9 1.450312 CACCAGGATTCGCCTCACC 60.450 63.158 0.00 0.00 46.97 4.02
9 10 2.109126 GCACCAGGATTCGCCTCAC 61.109 63.158 0.00 0.00 46.97 3.51
10 11 2.268920 GCACCAGGATTCGCCTCA 59.731 61.111 0.00 0.00 46.97 3.86
11 12 2.514824 GGCACCAGGATTCGCCTC 60.515 66.667 0.00 0.00 46.97 4.70
13 14 2.044946 AAGGCACCAGGATTCGCC 60.045 61.111 0.00 0.00 45.23 5.54
14 15 2.464459 CGAAGGCACCAGGATTCGC 61.464 63.158 0.00 0.00 38.20 4.70
15 16 2.464459 GCGAAGGCACCAGGATTCG 61.464 63.158 13.15 13.15 45.44 3.34
16 17 1.078143 AGCGAAGGCACCAGGATTC 60.078 57.895 0.00 0.00 43.41 2.52
17 18 1.078143 GAGCGAAGGCACCAGGATT 60.078 57.895 0.00 0.00 43.41 3.01
18 19 1.992277 AGAGCGAAGGCACCAGGAT 60.992 57.895 0.00 0.00 43.41 3.24
19 20 2.604686 AGAGCGAAGGCACCAGGA 60.605 61.111 0.00 0.00 43.41 3.86
20 21 2.435586 CAGAGCGAAGGCACCAGG 60.436 66.667 0.00 0.00 43.41 4.45
21 22 2.435586 CCAGAGCGAAGGCACCAG 60.436 66.667 0.00 0.00 43.41 4.00
27 28 1.394618 ACTACTAGCCAGAGCGAAGG 58.605 55.000 0.00 0.00 46.67 3.46
28 29 3.440228 GAAACTACTAGCCAGAGCGAAG 58.560 50.000 0.00 0.00 46.67 3.79
29 30 2.159421 CGAAACTACTAGCCAGAGCGAA 60.159 50.000 0.00 0.00 46.67 4.70
30 31 1.400846 CGAAACTACTAGCCAGAGCGA 59.599 52.381 0.00 0.00 46.67 4.93
31 32 1.534175 CCGAAACTACTAGCCAGAGCG 60.534 57.143 0.00 0.00 46.67 5.03
32 33 1.477295 ACCGAAACTACTAGCCAGAGC 59.523 52.381 0.00 0.00 40.32 4.09
33 34 3.870633 AACCGAAACTACTAGCCAGAG 57.129 47.619 0.00 0.00 0.00 3.35
34 35 4.338879 ACTAACCGAAACTACTAGCCAGA 58.661 43.478 0.00 0.00 0.00 3.86
35 36 4.715527 ACTAACCGAAACTACTAGCCAG 57.284 45.455 0.00 0.00 0.00 4.85
36 37 5.473066 AAACTAACCGAAACTACTAGCCA 57.527 39.130 0.00 0.00 0.00 4.75
37 38 6.791887 AAAAACTAACCGAAACTACTAGCC 57.208 37.500 0.00 0.00 0.00 3.93
68 69 3.858868 TTCCGAGTGTCGCACCTGC 62.859 63.158 6.39 0.00 38.82 4.85
69 70 1.734477 CTTCCGAGTGTCGCACCTG 60.734 63.158 6.39 0.71 38.82 4.00
70 71 1.461091 TTCTTCCGAGTGTCGCACCT 61.461 55.000 6.39 0.00 38.82 4.00
71 72 0.389948 ATTCTTCCGAGTGTCGCACC 60.390 55.000 6.39 0.00 38.82 5.01
72 73 0.992802 GATTCTTCCGAGTGTCGCAC 59.007 55.000 2.28 2.28 38.82 5.34
73 74 0.601057 TGATTCTTCCGAGTGTCGCA 59.399 50.000 0.00 0.00 38.82 5.10
74 75 0.992802 GTGATTCTTCCGAGTGTCGC 59.007 55.000 0.00 0.00 38.82 5.19
75 76 1.260206 CGTGATTCTTCCGAGTGTCG 58.740 55.000 0.00 0.00 40.07 4.35
76 77 1.067776 ACCGTGATTCTTCCGAGTGTC 60.068 52.381 0.00 0.00 0.00 3.67
77 78 0.966920 ACCGTGATTCTTCCGAGTGT 59.033 50.000 0.00 0.00 0.00 3.55
78 79 1.350193 CACCGTGATTCTTCCGAGTG 58.650 55.000 0.00 0.00 0.00 3.51
79 80 0.389948 GCACCGTGATTCTTCCGAGT 60.390 55.000 1.65 0.00 0.00 4.18
80 81 0.108615 AGCACCGTGATTCTTCCGAG 60.109 55.000 1.65 0.00 0.00 4.63
81 82 0.320374 AAGCACCGTGATTCTTCCGA 59.680 50.000 1.65 0.00 0.00 4.55
82 83 0.721718 GAAGCACCGTGATTCTTCCG 59.278 55.000 19.85 0.00 39.48 4.30
87 88 1.656095 CTCGAAGAAGCACCGTGATTC 59.344 52.381 19.59 19.59 42.60 2.52
88 89 1.000955 ACTCGAAGAAGCACCGTGATT 59.999 47.619 0.63 0.63 34.09 2.57
89 90 0.603569 ACTCGAAGAAGCACCGTGAT 59.396 50.000 1.65 0.00 34.09 3.06
90 91 1.241165 TACTCGAAGAAGCACCGTGA 58.759 50.000 1.65 0.00 34.09 4.35
91 92 2.279582 ATACTCGAAGAAGCACCGTG 57.720 50.000 0.00 0.00 34.09 4.94
92 93 3.884091 AGATATACTCGAAGAAGCACCGT 59.116 43.478 0.00 0.00 34.09 4.83
93 94 4.491234 AGATATACTCGAAGAAGCACCG 57.509 45.455 0.00 0.00 34.09 4.94
94 95 5.224135 GGAAGATATACTCGAAGAAGCACC 58.776 45.833 0.00 0.00 34.09 5.01
95 96 4.912766 CGGAAGATATACTCGAAGAAGCAC 59.087 45.833 0.00 0.00 34.09 4.40
96 97 4.023107 CCGGAAGATATACTCGAAGAAGCA 60.023 45.833 0.00 0.00 34.09 3.91
97 98 4.477780 CCGGAAGATATACTCGAAGAAGC 58.522 47.826 0.00 0.00 34.09 3.86
98 99 4.616373 GCCCGGAAGATATACTCGAAGAAG 60.616 50.000 0.73 0.00 34.09 2.85
99 100 3.255149 GCCCGGAAGATATACTCGAAGAA 59.745 47.826 0.73 0.00 34.09 2.52
100 101 2.818432 GCCCGGAAGATATACTCGAAGA 59.182 50.000 0.73 0.00 0.00 2.87
101 102 2.820787 AGCCCGGAAGATATACTCGAAG 59.179 50.000 0.73 0.00 0.00 3.79
102 103 2.818432 GAGCCCGGAAGATATACTCGAA 59.182 50.000 0.73 0.00 0.00 3.71
103 104 2.434428 GAGCCCGGAAGATATACTCGA 58.566 52.381 0.73 0.00 0.00 4.04
104 105 1.473278 GGAGCCCGGAAGATATACTCG 59.527 57.143 0.73 0.00 0.00 4.18
105 106 1.473278 CGGAGCCCGGAAGATATACTC 59.527 57.143 0.73 0.00 44.15 2.59
106 107 1.546961 CGGAGCCCGGAAGATATACT 58.453 55.000 0.73 0.00 44.15 2.12
117 118 2.721971 CCTGATTGGATCGGAGCCCG 62.722 65.000 10.23 7.24 43.28 6.13
118 119 1.072159 CCTGATTGGATCGGAGCCC 59.928 63.158 10.23 0.92 37.90 5.19
119 120 2.136791 TCCTGATTGGATCGGAGCC 58.863 57.895 5.08 5.08 40.56 4.70
127 128 3.321968 CCATCGACTATGTCCTGATTGGA 59.678 47.826 0.00 0.00 36.17 3.53
128 129 3.321968 TCCATCGACTATGTCCTGATTGG 59.678 47.826 0.00 0.00 33.34 3.16
129 130 4.279420 TCTCCATCGACTATGTCCTGATTG 59.721 45.833 0.00 0.00 33.34 2.67
130 131 4.279671 GTCTCCATCGACTATGTCCTGATT 59.720 45.833 0.00 0.00 33.34 2.57
131 132 3.823873 GTCTCCATCGACTATGTCCTGAT 59.176 47.826 0.00 0.00 33.34 2.90
132 133 3.215151 GTCTCCATCGACTATGTCCTGA 58.785 50.000 0.00 0.00 33.34 3.86
133 134 2.294791 GGTCTCCATCGACTATGTCCTG 59.705 54.545 0.00 0.00 33.34 3.86
134 135 2.588620 GGTCTCCATCGACTATGTCCT 58.411 52.381 0.00 0.00 33.34 3.85
135 136 1.614413 GGGTCTCCATCGACTATGTCC 59.386 57.143 0.00 0.00 33.34 4.02
136 137 1.267261 CGGGTCTCCATCGACTATGTC 59.733 57.143 0.00 0.00 33.34 3.06
137 138 1.319541 CGGGTCTCCATCGACTATGT 58.680 55.000 0.00 0.00 33.34 2.29
138 139 0.598562 CCGGGTCTCCATCGACTATG 59.401 60.000 0.00 0.00 34.38 2.23
139 140 1.179814 GCCGGGTCTCCATCGACTAT 61.180 60.000 2.18 0.00 34.38 2.12
140 141 1.826921 GCCGGGTCTCCATCGACTA 60.827 63.158 2.18 0.00 34.38 2.59
141 142 3.148279 GCCGGGTCTCCATCGACT 61.148 66.667 2.18 0.00 34.38 4.18
142 143 4.570663 CGCCGGGTCTCCATCGAC 62.571 72.222 2.18 0.00 31.77 4.20
143 144 3.702529 TACGCCGGGTCTCCATCGA 62.703 63.158 2.18 0.00 33.53 3.59
144 145 3.195591 CTACGCCGGGTCTCCATCG 62.196 68.421 2.18 0.00 34.83 3.84
145 146 2.728817 CTACGCCGGGTCTCCATC 59.271 66.667 2.18 0.00 0.00 3.51
146 147 2.838225 CCTACGCCGGGTCTCCAT 60.838 66.667 2.18 0.00 0.00 3.41
147 148 3.892104 AACCTACGCCGGGTCTCCA 62.892 63.158 2.18 0.00 35.83 3.86
148 149 3.073101 AACCTACGCCGGGTCTCC 61.073 66.667 2.18 0.00 35.83 3.71
149 150 2.493501 GAACCTACGCCGGGTCTC 59.506 66.667 2.18 0.00 37.79 3.36
150 151 3.073101 GGAACCTACGCCGGGTCT 61.073 66.667 2.18 0.00 40.72 3.85
151 152 3.073101 AGGAACCTACGCCGGGTC 61.073 66.667 2.18 0.13 40.16 4.46
152 153 3.387947 CAGGAACCTACGCCGGGT 61.388 66.667 2.18 1.55 38.94 5.28
153 154 4.832608 GCAGGAACCTACGCCGGG 62.833 72.222 2.18 0.00 0.00 5.73
154 155 3.771160 AGCAGGAACCTACGCCGG 61.771 66.667 0.00 0.00 0.00 6.13
155 156 2.509336 CAGCAGGAACCTACGCCG 60.509 66.667 0.00 0.00 0.00 6.46
156 157 1.448013 GACAGCAGGAACCTACGCC 60.448 63.158 0.00 0.00 0.00 5.68
157 158 0.037232 AAGACAGCAGGAACCTACGC 60.037 55.000 0.00 0.00 0.00 4.42
162 163 1.528129 CCAAGAAGACAGCAGGAACC 58.472 55.000 0.00 0.00 0.00 3.62
166 167 1.676967 GCCCCAAGAAGACAGCAGG 60.677 63.158 0.00 0.00 0.00 4.85
171 172 4.697756 CGCCGCCCCAAGAAGACA 62.698 66.667 0.00 0.00 0.00 3.41
187 188 4.485554 CGAGAAAGCCTCACCTCG 57.514 61.111 0.00 0.00 42.06 4.63
211 212 0.716108 CAAATCTCTCCGTCACGCAC 59.284 55.000 0.00 0.00 0.00 5.34
216 217 2.248248 AGACACCAAATCTCTCCGTCA 58.752 47.619 0.00 0.00 0.00 4.35
218 219 2.632996 TGAAGACACCAAATCTCTCCGT 59.367 45.455 0.00 0.00 0.00 4.69
220 221 4.543590 TCTGAAGACACCAAATCTCTCC 57.456 45.455 0.00 0.00 0.00 3.71
222 223 7.673641 ATAGATCTGAAGACACCAAATCTCT 57.326 36.000 5.18 0.00 0.00 3.10
235 236 7.914346 GCCATTGAACTTTGAATAGATCTGAAG 59.086 37.037 5.18 4.57 0.00 3.02
238 245 6.037500 TCGCCATTGAACTTTGAATAGATCTG 59.962 38.462 5.18 0.00 0.00 2.90
243 250 4.092821 TCGTCGCCATTGAACTTTGAATAG 59.907 41.667 0.00 0.00 0.00 1.73
269 277 1.535462 GGACCAACGCCATGTATATGC 59.465 52.381 0.00 0.00 32.79 3.14
271 279 3.857157 AAGGACCAACGCCATGTATAT 57.143 42.857 0.00 0.00 0.00 0.86
272 280 3.962063 TCTAAGGACCAACGCCATGTATA 59.038 43.478 0.00 0.00 0.00 1.47
273 281 2.769663 TCTAAGGACCAACGCCATGTAT 59.230 45.455 0.00 0.00 0.00 2.29
277 285 1.679032 GCTTCTAAGGACCAACGCCAT 60.679 52.381 0.00 0.00 0.00 4.40
278 286 0.321298 GCTTCTAAGGACCAACGCCA 60.321 55.000 0.00 0.00 0.00 5.69
280 288 0.796927 GTGCTTCTAAGGACCAACGC 59.203 55.000 3.19 0.00 40.96 4.84
290 298 2.800544 GTCTTCGTGCAAGTGCTTCTAA 59.199 45.455 4.69 0.00 42.66 2.10
294 302 1.599542 GAAGTCTTCGTGCAAGTGCTT 59.400 47.619 4.69 0.68 42.66 3.91
300 308 3.181469 ACAGTTAGGAAGTCTTCGTGCAA 60.181 43.478 16.31 2.83 0.00 4.08
314 322 2.798499 CGAGCCACCGATAACAGTTAGG 60.798 54.545 0.00 0.00 0.00 2.69
318 326 0.606604 AACGAGCCACCGATAACAGT 59.393 50.000 0.00 0.00 0.00 3.55
328 336 0.459585 TCGCCATTAGAACGAGCCAC 60.460 55.000 0.00 0.00 0.00 5.01
329 337 0.464036 ATCGCCATTAGAACGAGCCA 59.536 50.000 0.00 0.00 39.48 4.75
334 342 3.179795 CGACAACTATCGCCATTAGAACG 59.820 47.826 0.00 0.00 34.90 3.95
340 348 1.480954 AGGACGACAACTATCGCCATT 59.519 47.619 0.00 0.00 46.22 3.16
349 357 4.020396 TCTCTAGACTACAGGACGACAACT 60.020 45.833 0.00 0.00 0.00 3.16
360 368 4.757019 ACATCGAGGTCTCTAGACTACA 57.243 45.455 9.84 0.00 44.20 2.74
481 496 1.194781 TGGAAGGAGGCTGACTGGAC 61.195 60.000 0.00 0.00 0.00 4.02
486 501 0.615331 TCATGTGGAAGGAGGCTGAC 59.385 55.000 0.00 0.00 0.00 3.51
534 549 2.952245 GCAACACAGCTGAGGCAG 59.048 61.111 23.35 8.01 41.70 4.85
535 550 2.974148 CGCAACACAGCTGAGGCA 60.974 61.111 23.35 0.00 41.70 4.75
536 551 4.395583 GCGCAACACAGCTGAGGC 62.396 66.667 23.35 16.04 39.06 4.70
537 552 2.974148 TGCGCAACACAGCTGAGG 60.974 61.111 23.35 14.56 0.00 3.86
560 584 4.406173 CGAGTGGAGCGTGCGAGT 62.406 66.667 0.00 0.00 0.00 4.18
716 778 3.252215 TCGGTCCAACATTGTCAATTGTC 59.748 43.478 5.13 0.00 0.00 3.18
717 779 3.218453 TCGGTCCAACATTGTCAATTGT 58.782 40.909 5.13 0.00 0.00 2.71
718 780 3.913548 TCGGTCCAACATTGTCAATTG 57.086 42.857 0.00 0.00 0.00 2.32
719 781 3.126858 CGATCGGTCCAACATTGTCAATT 59.873 43.478 7.38 0.00 0.00 2.32
720 782 2.677836 CGATCGGTCCAACATTGTCAAT 59.322 45.455 7.38 0.00 0.00 2.57
721 783 2.073056 CGATCGGTCCAACATTGTCAA 58.927 47.619 7.38 0.00 0.00 3.18
722 784 1.001520 ACGATCGGTCCAACATTGTCA 59.998 47.619 20.98 0.00 0.00 3.58
763 825 0.393537 GACGACCTCCTCTCGGGTAA 60.394 60.000 0.00 0.00 35.77 2.85
830 905 1.519455 CTCTGGTTCCATCGGCGAC 60.519 63.158 13.76 0.00 0.00 5.19
843 922 4.319766 CGATCCGGCATTTAATTTCTCTGG 60.320 45.833 0.00 0.00 0.00 3.86
868 947 2.555757 GGTTTTCTTCAGCAGCACAGAT 59.444 45.455 0.00 0.00 0.00 2.90
951 1030 3.157087 GGGAGCCAATCAGAACAAGAAA 58.843 45.455 0.00 0.00 0.00 2.52
1122 3066 2.743928 CAGAAGAGGTGGCCGCAC 60.744 66.667 19.98 11.57 0.00 5.34
1197 3141 1.243342 CCTCGACATTGGCCTTGCAA 61.243 55.000 3.32 0.00 0.00 4.08
1209 3153 1.679305 GAGCCTGTCCTCCTCGACA 60.679 63.158 0.00 0.00 40.44 4.35
1234 3178 2.186903 CTTGCCACGGCCGTAGAT 59.813 61.111 33.70 4.94 41.09 1.98
1350 3294 2.672295 GGGTGCGGGTAATGGTCA 59.328 61.111 0.00 0.00 0.00 4.02
1591 3535 4.703645 TCTTCAAGTAGACATCGACCTG 57.296 45.455 0.00 0.00 0.00 4.00
1592 3536 4.440802 GCATCTTCAAGTAGACATCGACCT 60.441 45.833 0.00 0.00 0.00 3.85
1593 3537 3.799420 GCATCTTCAAGTAGACATCGACC 59.201 47.826 0.00 0.00 0.00 4.79
1653 3597 9.153721 CCACAACACATAATCTAAAATGCAATT 57.846 29.630 0.00 0.00 38.98 2.32
1686 3630 1.860326 GAAATGCAAGCACACCAACAC 59.140 47.619 0.00 0.00 0.00 3.32
1795 3740 5.048083 CACACAGTGGCAATTACAGGTTATT 60.048 40.000 5.31 0.00 0.00 1.40
1796 3741 4.458989 CACACAGTGGCAATTACAGGTTAT 59.541 41.667 5.31 0.00 0.00 1.89
1907 3852 3.173953 AGCCATCACCCAATCAAGAAA 57.826 42.857 0.00 0.00 0.00 2.52
1939 3884 2.936050 GCAGTTTGCATGCAAAGTTC 57.064 45.000 38.59 32.81 44.36 3.01
2018 3964 3.643763 CCGCATCAACCTGATAGAGTAC 58.356 50.000 0.00 0.00 34.28 2.73
2065 4012 7.941919 AGTTTATTTTCTGGAAACTTCTGTCC 58.058 34.615 0.00 0.00 39.75 4.02
2201 4148 7.558444 TGAAAAGGTTTCTAGAAAAAGGTAGCA 59.442 33.333 19.30 9.83 31.33 3.49
2278 4225 2.131776 TCCAACGGGTGACAGTTTTT 57.868 45.000 0.00 0.00 46.96 1.94
2292 4239 1.641577 GCACACGGTCTAGATCCAAC 58.358 55.000 0.00 0.00 0.00 3.77
2414 4361 7.238710 ACCAAACTAACCTTGTATCTTTCCAT 58.761 34.615 0.00 0.00 0.00 3.41
2415 4362 6.607019 ACCAAACTAACCTTGTATCTTTCCA 58.393 36.000 0.00 0.00 0.00 3.53
2416 4363 7.520451 AACCAAACTAACCTTGTATCTTTCC 57.480 36.000 0.00 0.00 0.00 3.13
2427 4374 6.151144 GCTCATGACATAAACCAAACTAACCT 59.849 38.462 0.00 0.00 0.00 3.50
2442 4389 1.088340 GCACAGAGCGCTCATGACAT 61.088 55.000 36.87 14.56 0.00 3.06
2456 4403 0.693049 ACCCCTAGTTCTTGGCACAG 59.307 55.000 0.00 0.00 42.39 3.66
2485 4451 8.023706 GCTATCTATATGATGTTTGTCGTCTCA 58.976 37.037 0.00 0.00 36.65 3.27
2487 4453 8.026026 CAGCTATCTATATGATGTTTGTCGTCT 58.974 37.037 0.00 0.00 36.65 4.18
2511 4477 4.180817 TCGTTCCATGCATGTTACTACAG 58.819 43.478 24.58 7.40 37.77 2.74
2515 4481 2.009774 GCTCGTTCCATGCATGTTACT 58.990 47.619 24.58 0.00 0.00 2.24
2520 4486 1.086067 ACTCGCTCGTTCCATGCATG 61.086 55.000 20.19 20.19 0.00 4.06
2521 4487 0.459899 TACTCGCTCGTTCCATGCAT 59.540 50.000 0.00 0.00 0.00 3.96
2527 4494 2.850647 GTGTGTATTACTCGCTCGTTCC 59.149 50.000 2.93 0.00 0.00 3.62
2534 4501 4.007282 TCACTACGTGTGTATTACTCGC 57.993 45.455 14.79 0.00 46.93 5.03
2580 4547 1.305297 AGCATCCGTCTCCACCTCA 60.305 57.895 0.00 0.00 0.00 3.86
2591 4558 0.395686 ACCATCTCCATCAGCATCCG 59.604 55.000 0.00 0.00 0.00 4.18
2609 4576 2.798148 AAGGGGACGTCGGCATCAAC 62.798 60.000 9.92 0.00 0.00 3.18
2622 4589 2.203280 CCACGTTGTGCAAGGGGA 60.203 61.111 8.26 0.00 31.72 4.81
2627 4594 1.719725 ATGTTCGCCACGTTGTGCAA 61.720 50.000 0.00 0.00 31.34 4.08
2629 4596 1.725625 CATGTTCGCCACGTTGTGC 60.726 57.895 0.00 0.00 31.34 4.57
2630 4597 1.082169 CCATGTTCGCCACGTTGTG 60.082 57.895 0.00 0.00 0.00 3.33
2631 4598 2.903547 GCCATGTTCGCCACGTTGT 61.904 57.895 0.00 0.00 0.00 3.32
2632 4599 2.126888 GCCATGTTCGCCACGTTG 60.127 61.111 0.00 0.00 0.00 4.10
2633 4600 3.722295 CGCCATGTTCGCCACGTT 61.722 61.111 0.00 0.00 0.00 3.99
2634 4601 3.950794 ATCGCCATGTTCGCCACGT 62.951 57.895 0.00 0.00 0.00 4.49
2635 4602 3.155470 GATCGCCATGTTCGCCACG 62.155 63.158 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.