Multiple sequence alignment - TraesCS3B01G336000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G336000 chr3B 100.000 2635 0 0 1 2635 542495031 542492397 0.000000e+00 4867.0
1 TraesCS3B01G336000 chr3D 85.418 1255 88 46 463 1692 415662490 415661306 0.000000e+00 1216.0
2 TraesCS3B01G336000 chr3D 95.703 256 9 2 2380 2635 602100499 602100246 6.790000e-111 411.0
3 TraesCS3B01G336000 chr7D 89.072 970 51 23 737 1692 6353931 6353003 0.000000e+00 1153.0
4 TraesCS3B01G336000 chr7D 81.622 185 19 8 463 638 6354174 6353996 3.540000e-29 139.0
5 TraesCS3B01G336000 chr7B 96.662 659 22 0 1730 2388 107611365 107612023 0.000000e+00 1096.0
6 TraesCS3B01G336000 chr7B 98.047 256 4 1 2380 2635 107611971 107612225 6.690000e-121 444.0
7 TraesCS3B01G336000 chr1B 95.613 661 24 3 1730 2389 315389089 315388433 0.000000e+00 1055.0
8 TraesCS3B01G336000 chr3A 85.849 954 51 27 726 1676 534477851 534478723 0.000000e+00 937.0
9 TraesCS3B01G336000 chr3A 81.279 219 31 7 166 383 534476879 534477088 4.510000e-38 169.0
10 TraesCS3B01G336000 chr3A 86.395 147 17 2 1 147 534476485 534476628 9.760000e-35 158.0
11 TraesCS3B01G336000 chr3A 89.231 65 4 3 457 518 534477258 534477322 7.820000e-11 78.7
12 TraesCS3B01G336000 chr1D 91.212 660 28 5 1730 2388 416296001 416296631 0.000000e+00 870.0
13 TraesCS3B01G336000 chr1A 90.193 673 47 10 1728 2388 509773192 509772527 0.000000e+00 859.0
14 TraesCS3B01G336000 chr1A 88.822 662 45 10 1728 2388 509489890 509489257 0.000000e+00 785.0
15 TraesCS3B01G336000 chr1A 88.386 663 47 4 1728 2388 509700407 509699773 0.000000e+00 771.0
16 TraesCS3B01G336000 chr6D 89.744 663 36 7 1728 2388 152998297 152997665 0.000000e+00 819.0
17 TraesCS3B01G336000 chr2B 89.307 664 37 13 1730 2391 680085432 680084801 0.000000e+00 802.0
18 TraesCS3B01G336000 chr2B 96.498 257 7 2 2380 2635 680084856 680084601 8.720000e-115 424.0
19 TraesCS3B01G336000 chr6B 88.989 663 43 4 1729 2389 563126086 563126720 0.000000e+00 793.0
20 TraesCS3B01G336000 chr4A 87.576 660 53 5 1730 2388 248560709 248561340 0.000000e+00 737.0
21 TraesCS3B01G336000 chr4A 96.414 251 9 0 2384 2634 248561291 248561541 5.250000e-112 414.0
22 TraesCS3B01G336000 chr4A 94.922 256 12 1 2380 2635 217326665 217326919 1.470000e-107 399.0
23 TraesCS3B01G336000 chr4B 86.856 563 42 5 1730 2291 173316009 173315478 3.750000e-168 601.0
24 TraesCS3B01G336000 chr4B 96.429 252 9 0 2384 2635 173306772 173306521 1.460000e-112 416.0
25 TraesCS3B01G336000 chr7A 96.429 252 9 0 2384 2635 112014532 112014281 1.460000e-112 416.0
26 TraesCS3B01G336000 chr7A 95.703 256 9 2 2380 2635 8248513 8248766 6.790000e-111 411.0
27 TraesCS3B01G336000 chr6A 96.429 252 9 0 2384 2635 525006962 525007213 1.460000e-112 416.0
28 TraesCS3B01G336000 chr6A 84.751 341 22 6 1730 2069 524997416 524997727 5.470000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G336000 chr3B 542492397 542495031 2634 True 4867.000 4867 100.0000 1 2635 1 chr3B.!!$R1 2634
1 TraesCS3B01G336000 chr3D 415661306 415662490 1184 True 1216.000 1216 85.4180 463 1692 1 chr3D.!!$R1 1229
2 TraesCS3B01G336000 chr7D 6353003 6354174 1171 True 646.000 1153 85.3470 463 1692 2 chr7D.!!$R1 1229
3 TraesCS3B01G336000 chr7B 107611365 107612225 860 False 770.000 1096 97.3545 1730 2635 2 chr7B.!!$F1 905
4 TraesCS3B01G336000 chr1B 315388433 315389089 656 True 1055.000 1055 95.6130 1730 2389 1 chr1B.!!$R1 659
5 TraesCS3B01G336000 chr3A 534476485 534478723 2238 False 335.675 937 85.6885 1 1676 4 chr3A.!!$F1 1675
6 TraesCS3B01G336000 chr1D 416296001 416296631 630 False 870.000 870 91.2120 1730 2388 1 chr1D.!!$F1 658
7 TraesCS3B01G336000 chr1A 509772527 509773192 665 True 859.000 859 90.1930 1728 2388 1 chr1A.!!$R3 660
8 TraesCS3B01G336000 chr1A 509489257 509489890 633 True 785.000 785 88.8220 1728 2388 1 chr1A.!!$R1 660
9 TraesCS3B01G336000 chr1A 509699773 509700407 634 True 771.000 771 88.3860 1728 2388 1 chr1A.!!$R2 660
10 TraesCS3B01G336000 chr6D 152997665 152998297 632 True 819.000 819 89.7440 1728 2388 1 chr6D.!!$R1 660
11 TraesCS3B01G336000 chr2B 680084601 680085432 831 True 613.000 802 92.9025 1730 2635 2 chr2B.!!$R1 905
12 TraesCS3B01G336000 chr6B 563126086 563126720 634 False 793.000 793 88.9890 1729 2389 1 chr6B.!!$F1 660
13 TraesCS3B01G336000 chr4A 248560709 248561541 832 False 575.500 737 91.9950 1730 2634 2 chr4A.!!$F2 904
14 TraesCS3B01G336000 chr4B 173315478 173316009 531 True 601.000 601 86.8560 1730 2291 1 chr4B.!!$R2 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.041312 CGAGGTTTGTGTTTGCGGAG 60.041 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 2492 0.109132 GTTGCCCAACAGCATAGCAC 60.109 55.0 6.29 0.0 43.64 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.821810 GGAAGCTTCCTCTGGCGC 60.822 66.667 33.98 8.66 44.11 6.53
18 19 2.821810 GAAGCTTCCTCTGGCGCC 60.822 66.667 22.73 22.73 0.00 6.53
19 20 4.416738 AAGCTTCCTCTGGCGCCC 62.417 66.667 26.77 5.30 0.00 6.13
22 23 2.034066 CTTCCTCTGGCGCCCAAA 59.966 61.111 26.77 8.28 30.80 3.28
23 24 2.282180 TTCCTCTGGCGCCCAAAC 60.282 61.111 26.77 0.00 30.80 2.93
24 25 3.860930 TTCCTCTGGCGCCCAAACC 62.861 63.158 26.77 0.00 30.80 3.27
35 36 3.047877 CCAAACCCTGACGTCCGC 61.048 66.667 14.12 0.00 0.00 5.54
101 102 0.461163 TGGCATACATAACGCACGCT 60.461 50.000 0.00 0.00 0.00 5.07
103 104 1.862201 GGCATACATAACGCACGCTTA 59.138 47.619 0.00 0.00 0.00 3.09
104 105 2.478894 GGCATACATAACGCACGCTTAT 59.521 45.455 0.00 0.00 0.00 1.73
105 106 3.059188 GGCATACATAACGCACGCTTATT 60.059 43.478 0.00 0.00 0.00 1.40
106 107 4.523813 GCATACATAACGCACGCTTATTT 58.476 39.130 0.00 0.00 0.00 1.40
107 108 4.967575 GCATACATAACGCACGCTTATTTT 59.032 37.500 0.00 0.00 0.00 1.82
118 119 4.089923 GCACGCTTATTTTGTCCATTTCAC 59.910 41.667 0.00 0.00 0.00 3.18
129 130 1.879380 TCCATTTCACTGCGAGGTTTG 59.121 47.619 0.00 0.00 0.00 2.93
140 141 0.041312 CGAGGTTTGTGTTTGCGGAG 60.041 55.000 0.00 0.00 0.00 4.63
147 148 1.234821 TGTGTTTGCGGAGTGGAATC 58.765 50.000 0.00 0.00 0.00 2.52
148 149 1.202758 TGTGTTTGCGGAGTGGAATCT 60.203 47.619 0.00 0.00 0.00 2.40
149 150 2.037902 TGTGTTTGCGGAGTGGAATCTA 59.962 45.455 0.00 0.00 0.00 1.98
153 157 2.961526 TGCGGAGTGGAATCTAGAAC 57.038 50.000 0.00 0.00 0.00 3.01
159 163 6.049790 GCGGAGTGGAATCTAGAACTTATTT 58.950 40.000 0.00 0.00 0.00 1.40
163 167 8.669243 GGAGTGGAATCTAGAACTTATTTTGTG 58.331 37.037 0.00 0.00 0.00 3.33
164 168 9.220767 GAGTGGAATCTAGAACTTATTTTGTGT 57.779 33.333 0.00 0.00 0.00 3.72
198 431 3.257393 CTTCGATCTTGTCTTGGACCTG 58.743 50.000 0.00 0.00 0.00 4.00
210 443 1.860641 TGGACCTGGCTTCTAATCGA 58.139 50.000 0.00 0.00 0.00 3.59
241 474 2.170036 CACGCAGCCAACGTAACG 59.830 61.111 0.00 0.00 42.96 3.18
245 478 1.623081 CGCAGCCAACGTAACGACAT 61.623 55.000 0.00 0.00 0.00 3.06
247 480 0.179225 CAGCCAACGTAACGACATGC 60.179 55.000 0.00 0.00 0.00 4.06
249 482 0.179225 GCCAACGTAACGACATGCAG 60.179 55.000 0.00 0.00 0.00 4.41
253 486 1.909376 ACGTAACGACATGCAGCTAG 58.091 50.000 0.00 0.00 0.00 3.42
256 489 1.855360 GTAACGACATGCAGCTAGAGC 59.145 52.381 0.00 0.00 42.49 4.09
278 511 5.043903 GCTAGTAGATGCGAAATGTTCAGA 58.956 41.667 0.00 0.00 0.00 3.27
280 513 6.201806 GCTAGTAGATGCGAAATGTTCAGAAT 59.798 38.462 0.00 0.00 0.00 2.40
282 515 9.249457 CTAGTAGATGCGAAATGTTCAGAATTA 57.751 33.333 0.00 0.00 0.00 1.40
302 535 0.586802 GTTGGCGTTTCGAAGCTTCT 59.413 50.000 23.50 0.00 0.00 2.85
308 541 3.359654 GCGTTTCGAAGCTTCTCAAAAA 58.640 40.909 23.50 14.73 0.00 1.94
310 543 3.968724 CGTTTCGAAGCTTCTCAAAAAGG 59.031 43.478 23.50 17.38 0.00 3.11
311 544 4.260620 CGTTTCGAAGCTTCTCAAAAAGGA 60.261 41.667 23.50 8.44 0.00 3.36
312 545 4.813296 TTCGAAGCTTCTCAAAAAGGAC 57.187 40.909 23.50 0.00 0.00 3.85
318 551 2.489073 GCTTCTCAAAAAGGACAGGGGA 60.489 50.000 0.00 0.00 0.00 4.81
325 558 4.343814 TCAAAAAGGACAGGGGACAAAATC 59.656 41.667 0.00 0.00 0.00 2.17
327 560 2.887151 AGGACAGGGGACAAAATCAG 57.113 50.000 0.00 0.00 0.00 2.90
331 564 1.203050 ACAGGGGACAAAATCAGTGGG 60.203 52.381 0.00 0.00 0.00 4.61
333 566 1.786441 AGGGGACAAAATCAGTGGGAA 59.214 47.619 0.00 0.00 0.00 3.97
338 571 4.048504 GGACAAAATCAGTGGGAAAAACG 58.951 43.478 0.00 0.00 0.00 3.60
342 575 1.241315 ATCAGTGGGAAAAACGCCGG 61.241 55.000 0.00 0.00 0.00 6.13
346 579 2.126110 GGGAAAAACGCCGGCATG 60.126 61.111 28.98 14.14 0.00 4.06
354 587 3.869272 CGCCGGCATGCTTCTGTC 61.869 66.667 28.98 0.00 0.00 3.51
355 588 3.869272 GCCGGCATGCTTCTGTCG 61.869 66.667 24.80 11.18 43.61 4.35
356 589 2.434884 CCGGCATGCTTCTGTCGT 60.435 61.111 18.92 0.00 42.49 4.34
364 598 3.261580 CATGCTTCTGTCGTCATGGTAA 58.738 45.455 0.00 0.00 34.32 2.85
372 606 4.341235 TCTGTCGTCATGGTAATAAGAGGG 59.659 45.833 0.00 0.00 0.00 4.30
375 609 5.365605 TGTCGTCATGGTAATAAGAGGGAAT 59.634 40.000 0.00 0.00 0.00 3.01
377 611 4.997395 CGTCATGGTAATAAGAGGGAATGG 59.003 45.833 0.00 0.00 0.00 3.16
383 617 5.544176 TGGTAATAAGAGGGAATGGAGCTAG 59.456 44.000 0.00 0.00 0.00 3.42
385 619 6.043358 GGTAATAAGAGGGAATGGAGCTAGTT 59.957 42.308 0.00 0.00 0.00 2.24
391 677 5.544562 AGAGGGAATGGAGCTAGTTATTACC 59.455 44.000 5.31 5.31 34.38 2.85
407 693 6.703607 AGTTATTACCTGAAGCAGATCGATTG 59.296 38.462 0.00 1.24 32.44 2.67
415 701 4.813161 TGAAGCAGATCGATTGGAGAATTC 59.187 41.667 0.00 0.00 0.00 2.17
416 702 4.412796 AGCAGATCGATTGGAGAATTCA 57.587 40.909 8.44 0.00 0.00 2.57
417 703 4.970711 AGCAGATCGATTGGAGAATTCAT 58.029 39.130 8.44 0.00 0.00 2.57
418 704 5.374921 AGCAGATCGATTGGAGAATTCATT 58.625 37.500 8.44 0.00 0.00 2.57
423 709 6.654161 AGATCGATTGGAGAATTCATTGGATC 59.346 38.462 8.44 9.67 38.62 3.36
432 718 3.912496 ATTCATTGGATCGGACACTGA 57.088 42.857 0.00 0.00 0.00 3.41
440 726 3.069586 TGGATCGGACACTGAATATCACC 59.930 47.826 0.00 0.00 0.00 4.02
510 850 7.480810 TGGATATCCGATCGAATTAGTATGTG 58.519 38.462 18.66 0.00 39.43 3.21
514 854 3.921021 CCGATCGAATTAGTATGTGCTCC 59.079 47.826 18.66 0.00 0.00 4.70
518 858 3.321111 TCGAATTAGTATGTGCTCCCCTC 59.679 47.826 0.00 0.00 0.00 4.30
519 859 3.322254 CGAATTAGTATGTGCTCCCCTCT 59.678 47.826 0.00 0.00 0.00 3.69
521 861 2.383442 TAGTATGTGCTCCCCTCTCC 57.617 55.000 0.00 0.00 0.00 3.71
523 863 1.008938 AGTATGTGCTCCCCTCTCCTT 59.991 52.381 0.00 0.00 0.00 3.36
525 865 1.501582 ATGTGCTCCCCTCTCCTTAC 58.498 55.000 0.00 0.00 0.00 2.34
526 866 0.413832 TGTGCTCCCCTCTCCTTACT 59.586 55.000 0.00 0.00 0.00 2.24
528 868 1.909986 GTGCTCCCCTCTCCTTACTTT 59.090 52.381 0.00 0.00 0.00 2.66
531 871 2.435069 GCTCCCCTCTCCTTACTTTACC 59.565 54.545 0.00 0.00 0.00 2.85
533 873 3.962063 CTCCCCTCTCCTTACTTTACCTC 59.038 52.174 0.00 0.00 0.00 3.85
534 874 2.694109 CCCCTCTCCTTACTTTACCTCG 59.306 54.545 0.00 0.00 0.00 4.63
535 875 3.363627 CCCTCTCCTTACTTTACCTCGT 58.636 50.000 0.00 0.00 0.00 4.18
538 878 4.946157 CCTCTCCTTACTTTACCTCGTGTA 59.054 45.833 0.00 0.00 0.00 2.90
567 907 2.972625 TGTTTCAGTATCTCCAAGGCG 58.027 47.619 0.00 0.00 0.00 5.52
576 917 1.045350 TCTCCAAGGCGAGCTATGCT 61.045 55.000 9.99 0.00 43.88 3.79
581 922 3.323691 TCCAAGGCGAGCTATGCTAATTA 59.676 43.478 9.99 0.00 39.88 1.40
584 925 5.292101 CCAAGGCGAGCTATGCTAATTATAC 59.708 44.000 9.99 0.00 39.88 1.47
585 926 5.012328 AGGCGAGCTATGCTAATTATACC 57.988 43.478 9.99 0.00 39.88 2.73
586 927 4.466370 AGGCGAGCTATGCTAATTATACCA 59.534 41.667 9.99 0.00 39.88 3.25
587 928 4.806247 GGCGAGCTATGCTAATTATACCAG 59.194 45.833 9.99 0.00 39.88 4.00
588 929 5.411781 GCGAGCTATGCTAATTATACCAGT 58.588 41.667 3.25 0.00 39.88 4.00
589 930 5.869888 GCGAGCTATGCTAATTATACCAGTT 59.130 40.000 3.25 0.00 39.88 3.16
591 932 7.544566 GCGAGCTATGCTAATTATACCAGTTTA 59.455 37.037 3.25 0.00 39.88 2.01
592 933 9.419297 CGAGCTATGCTAATTATACCAGTTTAA 57.581 33.333 0.00 0.00 39.88 1.52
632 975 5.996219 TCAGTAATCACACCAAAAATGACG 58.004 37.500 0.00 0.00 0.00 4.35
649 992 2.124060 CGCTCCTCTCTGGCTAGCA 61.124 63.158 18.24 1.68 35.94 3.49
651 994 0.104671 GCTCCTCTCTGGCTAGCAAG 59.895 60.000 18.24 15.82 36.15 4.01
674 1017 8.738106 CAAGCACTAGTAGTAAGTAGTAACCTT 58.262 37.037 1.57 0.00 39.41 3.50
727 1072 1.152610 GAGCATGGACATGGGCCAT 60.153 57.895 14.78 14.78 46.76 4.40
752 1502 1.081108 GCTCGATCGATCCTTCCGG 60.081 63.158 19.78 5.28 0.00 5.14
760 1510 0.811616 CGATCCTTCCGGCAGAAAGG 60.812 60.000 12.45 12.45 32.88 3.11
761 1511 0.464554 GATCCTTCCGGCAGAAAGGG 60.465 60.000 17.23 1.09 32.88 3.95
777 1527 4.889995 AGAAAGGGAGAAGAACCACAAAAG 59.110 41.667 0.00 0.00 0.00 2.27
823 1573 1.812507 GCCCCGCCGTAACTTACTG 60.813 63.158 0.00 0.00 0.00 2.74
824 1574 1.812507 CCCCGCCGTAACTTACTGC 60.813 63.158 5.50 5.50 35.84 4.40
825 1575 1.812507 CCCGCCGTAACTTACTGCC 60.813 63.158 9.10 0.00 35.79 4.85
826 1576 1.812507 CCGCCGTAACTTACTGCCC 60.813 63.158 9.10 0.00 35.79 5.36
827 1577 1.079681 CGCCGTAACTTACTGCCCA 60.080 57.895 9.10 0.00 35.79 5.36
828 1578 1.082117 CGCCGTAACTTACTGCCCAG 61.082 60.000 9.10 0.00 35.79 4.45
829 1579 1.366854 GCCGTAACTTACTGCCCAGC 61.367 60.000 4.43 0.00 33.49 4.85
834 1584 2.142292 AACTTACTGCCCAGCCCCAG 62.142 60.000 0.00 0.00 35.26 4.45
848 1598 3.818787 CCAGCGCATTGGACTGCC 61.819 66.667 11.47 0.00 40.87 4.85
897 1649 1.079819 ACCTCAAGCATCACGGTCG 60.080 57.895 0.00 0.00 0.00 4.79
956 1708 2.778679 CTTTCGGCTTTCGCGGAG 59.221 61.111 6.13 6.12 44.71 4.63
957 1709 1.736645 CTTTCGGCTTTCGCGGAGA 60.737 57.895 6.13 0.00 44.71 3.71
958 1710 1.687494 CTTTCGGCTTTCGCGGAGAG 61.687 60.000 6.13 2.86 44.71 3.20
970 1722 1.154814 GCGGAGAGAAGCGAATTCCC 61.155 60.000 0.00 0.00 38.84 3.97
972 1724 1.804372 CGGAGAGAAGCGAATTCCCAG 60.804 57.143 0.00 0.00 38.84 4.45
978 1730 1.546029 GAAGCGAATTCCCAGGCTTTT 59.454 47.619 16.27 0.00 45.04 2.27
979 1731 0.890683 AGCGAATTCCCAGGCTTTTG 59.109 50.000 0.00 0.00 30.04 2.44
980 1732 0.108662 GCGAATTCCCAGGCTTTTGG 60.109 55.000 0.00 0.00 38.00 3.28
981 1733 0.108662 CGAATTCCCAGGCTTTTGGC 60.109 55.000 0.00 0.00 46.43 4.52
1026 1780 1.377725 CATGGAGGTCGCAAAGCCT 60.378 57.895 0.00 0.00 37.91 4.58
1305 2080 2.106683 GTTCTTCGCGTCCATGGGG 61.107 63.158 13.02 5.58 0.00 4.96
1407 2182 2.105128 GTGAGGATCGTGGAGCGG 59.895 66.667 0.00 0.00 41.72 5.52
1635 2411 2.547430 CGCATGATGAGCCATGACTAGT 60.547 50.000 0.00 0.00 44.98 2.57
1638 2414 4.449131 CATGATGAGCCATGACTAGTTGT 58.551 43.478 0.00 0.00 44.98 3.32
1643 2419 3.324846 TGAGCCATGACTAGTTGTCTGTT 59.675 43.478 0.00 0.00 45.54 3.16
1644 2420 4.202357 TGAGCCATGACTAGTTGTCTGTTT 60.202 41.667 0.00 0.00 45.54 2.83
1647 2423 3.123621 CCATGACTAGTTGTCTGTTTCGC 59.876 47.826 0.00 0.00 45.54 4.70
1648 2424 2.750948 TGACTAGTTGTCTGTTTCGCC 58.249 47.619 0.00 0.00 45.54 5.54
1649 2425 1.719780 GACTAGTTGTCTGTTTCGCCG 59.280 52.381 0.00 0.00 42.21 6.46
1650 2426 0.438830 CTAGTTGTCTGTTTCGCCGC 59.561 55.000 0.00 0.00 0.00 6.53
1651 2427 1.279527 TAGTTGTCTGTTTCGCCGCG 61.280 55.000 6.39 6.39 0.00 6.46
1652 2428 3.342627 TTGTCTGTTTCGCCGCGG 61.343 61.111 24.05 24.05 0.00 6.46
1674 2450 1.544724 GGCTGGGCATCACTTTGTTA 58.455 50.000 0.00 0.00 0.00 2.41
1688 2464 3.813166 ACTTTGTTACTTCATCCGTGTGG 59.187 43.478 0.00 0.00 0.00 4.17
1691 2467 3.811083 TGTTACTTCATCCGTGTGGTTT 58.189 40.909 0.00 0.00 36.30 3.27
1692 2468 3.562141 TGTTACTTCATCCGTGTGGTTTG 59.438 43.478 0.00 0.00 36.30 2.93
1693 2469 2.341846 ACTTCATCCGTGTGGTTTGT 57.658 45.000 0.00 0.00 36.30 2.83
1694 2470 1.946768 ACTTCATCCGTGTGGTTTGTG 59.053 47.619 0.00 0.00 36.30 3.33
1695 2471 1.946768 CTTCATCCGTGTGGTTTGTGT 59.053 47.619 0.00 0.00 36.30 3.72
1696 2472 1.304254 TCATCCGTGTGGTTTGTGTG 58.696 50.000 0.00 0.00 36.30 3.82
1697 2473 0.310543 CATCCGTGTGGTTTGTGTGG 59.689 55.000 0.00 0.00 36.30 4.17
1698 2474 1.452145 ATCCGTGTGGTTTGTGTGGC 61.452 55.000 0.00 0.00 36.30 5.01
1699 2475 2.024022 CGTGTGGTTTGTGTGGCG 59.976 61.111 0.00 0.00 0.00 5.69
1700 2476 2.278531 GTGTGGTTTGTGTGGCGC 60.279 61.111 0.00 0.00 0.00 6.53
1701 2477 3.882013 TGTGGTTTGTGTGGCGCG 61.882 61.111 0.00 0.00 0.00 6.86
1718 2494 4.025401 GCGCCCCAGTTGAACGTG 62.025 66.667 0.00 0.00 0.00 4.49
1719 2495 4.025401 CGCCCCAGTTGAACGTGC 62.025 66.667 0.00 0.00 0.00 5.34
1720 2496 2.594592 GCCCCAGTTGAACGTGCT 60.595 61.111 0.00 0.00 0.00 4.40
1721 2497 1.302192 GCCCCAGTTGAACGTGCTA 60.302 57.895 0.00 0.00 0.00 3.49
1722 2498 0.676782 GCCCCAGTTGAACGTGCTAT 60.677 55.000 0.00 0.00 0.00 2.97
1723 2499 1.086696 CCCCAGTTGAACGTGCTATG 58.913 55.000 0.00 0.00 0.00 2.23
1724 2500 0.447801 CCCAGTTGAACGTGCTATGC 59.552 55.000 0.00 0.00 0.00 3.14
1725 2501 1.442769 CCAGTTGAACGTGCTATGCT 58.557 50.000 0.00 0.00 0.00 3.79
1726 2502 1.129251 CCAGTTGAACGTGCTATGCTG 59.871 52.381 0.00 0.00 0.00 4.41
1819 2596 3.020647 TGGGCCGTTGGATCCCAT 61.021 61.111 9.90 0.00 44.62 4.00
1835 2612 4.202245 TCCCATCGAAGAAAACGATTCT 57.798 40.909 0.00 0.00 46.06 2.40
1891 2669 1.065564 AGAAATCTGCAGGTCAGCCTC 60.066 52.381 15.13 0.00 44.97 4.70
1892 2670 0.034670 AAATCTGCAGGTCAGCCTCC 60.035 55.000 15.13 0.00 44.97 4.30
1893 2671 0.913451 AATCTGCAGGTCAGCCTCCT 60.913 55.000 15.13 0.00 44.97 3.69
1894 2672 1.336632 ATCTGCAGGTCAGCCTCCTC 61.337 60.000 15.13 0.00 44.97 3.71
1895 2673 3.368190 CTGCAGGTCAGCCTCCTCG 62.368 68.421 5.57 0.00 44.97 4.63
1896 2674 3.386237 GCAGGTCAGCCTCCTCGT 61.386 66.667 0.00 0.00 44.97 4.18
1897 2675 2.575993 CAGGTCAGCCTCCTCGTG 59.424 66.667 0.00 0.00 44.97 4.35
1898 2676 3.386237 AGGTCAGCCTCCTCGTGC 61.386 66.667 0.00 0.00 42.67 5.34
1899 2677 4.803426 GGTCAGCCTCCTCGTGCG 62.803 72.222 0.00 0.00 0.00 5.34
2426 3267 3.799137 TTTTTGATTGACGGACGTAGC 57.201 42.857 0.00 0.00 0.00 3.58
2427 3268 2.442212 TTTGATTGACGGACGTAGCA 57.558 45.000 0.00 0.00 0.00 3.49
2428 3269 2.665649 TTGATTGACGGACGTAGCAT 57.334 45.000 0.00 0.00 0.00 3.79
2429 3270 2.665649 TGATTGACGGACGTAGCATT 57.334 45.000 0.00 0.00 0.00 3.56
2430 3271 2.967362 TGATTGACGGACGTAGCATTT 58.033 42.857 0.00 0.00 0.00 2.32
2431 3272 3.331150 TGATTGACGGACGTAGCATTTT 58.669 40.909 0.00 0.00 0.00 1.82
2432 3273 3.749088 TGATTGACGGACGTAGCATTTTT 59.251 39.130 0.00 0.00 0.00 1.94
2433 3274 3.799137 TTGACGGACGTAGCATTTTTC 57.201 42.857 0.00 0.00 0.00 2.29
2434 3275 2.756829 TGACGGACGTAGCATTTTTCA 58.243 42.857 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.966787 GTCAGGGTTTGGGCGCCA 62.967 66.667 30.85 12.04 0.00 5.69
17 18 2.358247 CGGACGTCAGGGTTTGGG 60.358 66.667 18.91 0.00 0.00 4.12
18 19 3.047877 GCGGACGTCAGGGTTTGG 61.048 66.667 18.91 0.00 0.00 3.28
19 20 2.027625 GAGCGGACGTCAGGGTTTG 61.028 63.158 18.91 0.00 0.00 2.93
65 66 3.923864 ACCTGAACCACTGCGCGA 61.924 61.111 12.10 0.00 0.00 5.87
101 102 5.335583 CCTCGCAGTGAAATGGACAAAATAA 60.336 40.000 0.00 0.00 0.00 1.40
103 104 3.057315 CCTCGCAGTGAAATGGACAAAAT 60.057 43.478 0.00 0.00 0.00 1.82
104 105 2.293122 CCTCGCAGTGAAATGGACAAAA 59.707 45.455 0.00 0.00 0.00 2.44
105 106 1.879380 CCTCGCAGTGAAATGGACAAA 59.121 47.619 0.00 0.00 0.00 2.83
106 107 1.202758 ACCTCGCAGTGAAATGGACAA 60.203 47.619 0.00 0.00 0.00 3.18
107 108 0.396435 ACCTCGCAGTGAAATGGACA 59.604 50.000 0.00 0.00 0.00 4.02
118 119 0.929824 CGCAAACACAAACCTCGCAG 60.930 55.000 0.00 0.00 0.00 5.18
129 130 1.523758 AGATTCCACTCCGCAAACAC 58.476 50.000 0.00 0.00 0.00 3.32
147 148 9.410556 CCCATTCAAACACAAAATAAGTTCTAG 57.589 33.333 0.00 0.00 0.00 2.43
148 149 7.870445 GCCCATTCAAACACAAAATAAGTTCTA 59.130 33.333 0.00 0.00 0.00 2.10
149 150 6.705825 GCCCATTCAAACACAAAATAAGTTCT 59.294 34.615 0.00 0.00 0.00 3.01
153 157 4.388469 CCGCCCATTCAAACACAAAATAAG 59.612 41.667 0.00 0.00 0.00 1.73
159 163 1.112315 AGCCGCCCATTCAAACACAA 61.112 50.000 0.00 0.00 0.00 3.33
163 167 1.154035 CGAAGCCGCCCATTCAAAC 60.154 57.895 0.00 0.00 0.00 2.93
164 168 0.679640 ATCGAAGCCGCCCATTCAAA 60.680 50.000 0.00 0.00 35.37 2.69
168 401 1.097547 CAAGATCGAAGCCGCCCATT 61.098 55.000 0.00 0.00 35.37 3.16
198 431 3.126831 CACACCATCTCGATTAGAAGCC 58.873 50.000 0.00 0.00 37.89 4.35
210 443 0.534877 TGCGTGCTTTCACACCATCT 60.535 50.000 0.00 0.00 43.28 2.90
230 463 0.179225 CTGCATGTCGTTACGTTGGC 60.179 55.000 4.24 5.66 0.00 4.52
234 467 1.471287 TCTAGCTGCATGTCGTTACGT 59.529 47.619 4.24 0.00 0.00 3.57
235 468 2.112522 CTCTAGCTGCATGTCGTTACG 58.887 52.381 1.02 0.00 0.00 3.18
237 470 2.209838 GCTCTAGCTGCATGTCGTTA 57.790 50.000 1.02 0.00 38.21 3.18
249 482 4.491234 TTTCGCATCTACTAGCTCTAGC 57.509 45.455 0.00 0.00 42.49 3.42
253 486 5.043903 TGAACATTTCGCATCTACTAGCTC 58.956 41.667 0.00 0.00 0.00 4.09
256 489 7.706281 ATTCTGAACATTTCGCATCTACTAG 57.294 36.000 0.00 0.00 0.00 2.57
257 490 9.249457 CTAATTCTGAACATTTCGCATCTACTA 57.751 33.333 0.00 0.00 0.00 1.82
258 491 6.992063 AATTCTGAACATTTCGCATCTACT 57.008 33.333 0.00 0.00 0.00 2.57
259 492 7.910304 ACTAATTCTGAACATTTCGCATCTAC 58.090 34.615 0.00 0.00 0.00 2.59
260 493 8.390354 CAACTAATTCTGAACATTTCGCATCTA 58.610 33.333 0.00 0.00 0.00 1.98
261 494 6.992063 ACTAATTCTGAACATTTCGCATCT 57.008 33.333 0.00 0.00 0.00 2.90
262 495 6.470235 CCAACTAATTCTGAACATTTCGCATC 59.530 38.462 0.00 0.00 0.00 3.91
263 496 6.324819 CCAACTAATTCTGAACATTTCGCAT 58.675 36.000 0.00 0.00 0.00 4.73
264 497 5.698832 CCAACTAATTCTGAACATTTCGCA 58.301 37.500 0.00 0.00 0.00 5.10
278 511 2.812011 AGCTTCGAAACGCCAACTAATT 59.188 40.909 5.82 0.00 0.00 1.40
280 513 1.873698 AGCTTCGAAACGCCAACTAA 58.126 45.000 5.82 0.00 0.00 2.24
282 515 0.586802 GAAGCTTCGAAACGCCAACT 59.413 50.000 11.40 0.00 0.00 3.16
302 535 3.390175 TTTGTCCCCTGTCCTTTTTGA 57.610 42.857 0.00 0.00 0.00 2.69
308 541 2.065799 ACTGATTTTGTCCCCTGTCCT 58.934 47.619 0.00 0.00 0.00 3.85
310 543 2.162681 CCACTGATTTTGTCCCCTGTC 58.837 52.381 0.00 0.00 0.00 3.51
311 544 1.203050 CCCACTGATTTTGTCCCCTGT 60.203 52.381 0.00 0.00 0.00 4.00
312 545 1.075374 TCCCACTGATTTTGTCCCCTG 59.925 52.381 0.00 0.00 0.00 4.45
318 551 3.453424 GCGTTTTTCCCACTGATTTTGT 58.547 40.909 0.00 0.00 0.00 2.83
325 558 2.642700 CCGGCGTTTTTCCCACTG 59.357 61.111 6.01 0.00 0.00 3.66
327 560 2.926420 ATGCCGGCGTTTTTCCCAC 61.926 57.895 23.90 0.00 0.00 4.61
331 564 1.344226 GAAGCATGCCGGCGTTTTTC 61.344 55.000 21.21 20.59 39.27 2.29
333 566 2.258286 GAAGCATGCCGGCGTTTT 59.742 55.556 21.21 16.64 39.27 2.43
338 571 3.869272 CGACAGAAGCATGCCGGC 61.869 66.667 22.73 22.73 0.00 6.13
342 575 0.376152 CCATGACGACAGAAGCATGC 59.624 55.000 10.51 10.51 37.41 4.06
346 579 5.348986 TCTTATTACCATGACGACAGAAGC 58.651 41.667 0.00 0.00 0.00 3.86
354 587 4.997395 CCATTCCCTCTTATTACCATGACG 59.003 45.833 0.00 0.00 0.00 4.35
355 588 6.187727 TCCATTCCCTCTTATTACCATGAC 57.812 41.667 0.00 0.00 0.00 3.06
356 589 5.221925 GCTCCATTCCCTCTTATTACCATGA 60.222 44.000 0.00 0.00 0.00 3.07
364 598 7.880265 AATAACTAGCTCCATTCCCTCTTAT 57.120 36.000 0.00 0.00 0.00 1.73
372 606 6.425417 GCTTCAGGTAATAACTAGCTCCATTC 59.575 42.308 0.00 0.00 36.15 2.67
375 609 4.714802 TGCTTCAGGTAATAACTAGCTCCA 59.285 41.667 0.00 0.00 36.15 3.86
377 611 6.150396 TCTGCTTCAGGTAATAACTAGCTC 57.850 41.667 0.00 0.00 36.15 4.09
383 617 6.073548 CCAATCGATCTGCTTCAGGTAATAAC 60.074 42.308 0.00 0.00 31.51 1.89
385 619 5.304357 TCCAATCGATCTGCTTCAGGTAATA 59.696 40.000 0.00 0.00 31.51 0.98
391 677 3.449528 TCTCCAATCGATCTGCTTCAG 57.550 47.619 0.00 0.00 0.00 3.02
407 693 3.561725 GTGTCCGATCCAATGAATTCTCC 59.438 47.826 7.05 0.00 0.00 3.71
415 701 5.178252 GTGATATTCAGTGTCCGATCCAATG 59.822 44.000 0.00 0.00 0.00 2.82
416 702 5.300752 GTGATATTCAGTGTCCGATCCAAT 58.699 41.667 0.00 0.00 0.00 3.16
417 703 4.442893 GGTGATATTCAGTGTCCGATCCAA 60.443 45.833 0.00 0.00 0.00 3.53
418 704 3.069586 GGTGATATTCAGTGTCCGATCCA 59.930 47.826 0.00 0.00 0.00 3.41
423 709 3.052745 CGATGGTGATATTCAGTGTCCG 58.947 50.000 0.00 0.00 0.00 4.79
432 718 4.320567 CGTGAGACTAGCGATGGTGATATT 60.321 45.833 0.00 0.00 0.00 1.28
459 793 1.523711 CATGGATAGCACCGCCGTT 60.524 57.895 0.00 0.00 0.00 4.44
510 850 2.435069 GGTAAAGTAAGGAGAGGGGAGC 59.565 54.545 0.00 0.00 0.00 4.70
514 854 3.130693 CACGAGGTAAAGTAAGGAGAGGG 59.869 52.174 0.00 0.00 0.00 4.30
543 883 5.451937 CGCCTTGGAGATACTGAAACATAGA 60.452 44.000 0.00 0.00 0.00 1.98
560 900 2.175878 ATTAGCATAGCTCGCCTTGG 57.824 50.000 4.50 0.00 40.44 3.61
581 922 7.033185 GCCGTCAATTTCAATTAAACTGGTAT 58.967 34.615 0.00 0.00 0.00 2.73
584 925 4.323336 CGCCGTCAATTTCAATTAAACTGG 59.677 41.667 0.00 0.00 0.00 4.00
585 926 5.150683 TCGCCGTCAATTTCAATTAAACTG 58.849 37.500 0.00 0.00 0.00 3.16
586 927 5.365403 TCGCCGTCAATTTCAATTAAACT 57.635 34.783 0.00 0.00 0.00 2.66
587 928 5.797934 TGATCGCCGTCAATTTCAATTAAAC 59.202 36.000 0.00 0.00 0.00 2.01
588 929 5.944013 TGATCGCCGTCAATTTCAATTAAA 58.056 33.333 0.00 0.00 0.00 1.52
589 930 5.123186 ACTGATCGCCGTCAATTTCAATTAA 59.877 36.000 0.00 0.00 0.00 1.40
591 932 3.440173 ACTGATCGCCGTCAATTTCAATT 59.560 39.130 0.00 0.00 0.00 2.32
592 933 3.009723 ACTGATCGCCGTCAATTTCAAT 58.990 40.909 0.00 0.00 0.00 2.57
599 940 2.094442 TGTGATTACTGATCGCCGTCAA 60.094 45.455 0.00 0.00 43.22 3.18
632 975 0.104671 CTTGCTAGCCAGAGAGGAGC 59.895 60.000 13.29 0.00 41.22 4.70
649 992 8.876303 AAGGTTACTACTTACTACTAGTGCTT 57.124 34.615 5.39 0.00 0.00 3.91
658 1001 8.993121 CCGATCGAATAAGGTTACTACTTACTA 58.007 37.037 18.66 0.00 33.63 1.82
659 1002 7.500559 ACCGATCGAATAAGGTTACTACTTACT 59.499 37.037 18.66 0.00 33.63 2.24
660 1003 7.643579 ACCGATCGAATAAGGTTACTACTTAC 58.356 38.462 18.66 0.00 33.63 2.34
661 1004 7.807977 ACCGATCGAATAAGGTTACTACTTA 57.192 36.000 18.66 0.00 35.14 2.24
662 1005 6.705863 ACCGATCGAATAAGGTTACTACTT 57.294 37.500 18.66 0.00 32.17 2.24
663 1006 6.073548 CGTACCGATCGAATAAGGTTACTACT 60.074 42.308 18.66 0.00 38.12 2.57
664 1007 6.074005 CGTACCGATCGAATAAGGTTACTAC 58.926 44.000 18.66 0.00 38.12 2.73
674 1017 3.860672 CGTTACACGTACCGATCGAATA 58.139 45.455 18.66 5.79 36.74 1.75
676 1019 2.158017 CGTTACACGTACCGATCGAA 57.842 50.000 18.66 0.59 36.74 3.71
694 1037 0.598419 TGCTCACTTGCTCAGTCACG 60.598 55.000 0.00 0.00 30.92 4.35
727 1072 2.631418 GGATCGATCGAGCCGATTAA 57.369 50.000 33.97 2.98 47.00 1.40
752 1502 2.155279 GTGGTTCTTCTCCCTTTCTGC 58.845 52.381 0.00 0.00 0.00 4.26
760 1510 2.885266 GGACCTTTTGTGGTTCTTCTCC 59.115 50.000 0.00 0.00 41.00 3.71
761 1511 2.548480 CGGACCTTTTGTGGTTCTTCTC 59.452 50.000 0.00 0.00 41.00 2.87
777 1527 1.460504 GAGGGAAATTTCACCGGACC 58.539 55.000 16.89 8.61 0.00 4.46
818 1568 4.047125 GCTGGGGCTGGGCAGTAA 62.047 66.667 0.00 0.00 35.22 2.24
829 1579 3.136123 CAGTCCAATGCGCTGGGG 61.136 66.667 15.05 10.25 37.06 4.96
848 1598 5.941555 ATATATAAGGGGAGAAAGGCGAG 57.058 43.478 0.00 0.00 0.00 5.03
952 1704 0.175760 TGGGAATTCGCTTCTCTCCG 59.824 55.000 21.56 0.00 35.19 4.63
953 1705 1.474143 CCTGGGAATTCGCTTCTCTCC 60.474 57.143 21.56 5.27 35.19 3.71
954 1706 1.946745 CCTGGGAATTCGCTTCTCTC 58.053 55.000 21.56 0.00 35.19 3.20
956 1708 0.107459 AGCCTGGGAATTCGCTTCTC 60.107 55.000 21.56 9.47 34.66 2.87
957 1709 0.329596 AAGCCTGGGAATTCGCTTCT 59.670 50.000 21.56 13.07 36.92 2.85
958 1710 1.177401 AAAGCCTGGGAATTCGCTTC 58.823 50.000 21.56 11.29 40.57 3.86
962 1714 0.108662 GCCAAAAGCCTGGGAATTCG 60.109 55.000 0.00 0.00 36.92 3.34
970 1722 0.033920 GGAACCTTGCCAAAAGCCTG 59.966 55.000 0.00 0.00 42.71 4.85
972 1724 0.318441 GAGGAACCTTGCCAAAAGCC 59.682 55.000 0.00 0.00 42.71 4.35
978 1730 4.697756 CGCCGAGGAACCTTGCCA 62.698 66.667 2.72 0.00 0.00 4.92
984 1736 4.796495 ATTGGCCGCCGAGGAACC 62.796 66.667 5.36 0.00 45.00 3.62
986 1738 4.794648 CCATTGGCCGCCGAGGAA 62.795 66.667 13.13 0.00 45.00 3.36
1407 2182 4.798682 TCCTCCTCCCCGCCCTTC 62.799 72.222 0.00 0.00 0.00 3.46
1635 2411 3.342627 CCGCGGCGAAACAGACAA 61.343 61.111 25.92 0.00 0.00 3.18
1653 2429 2.361610 AAAGTGATGCCCAGCCGG 60.362 61.111 0.00 0.00 0.00 6.13
1674 2450 1.946768 CACAAACCACACGGATGAAGT 59.053 47.619 0.00 0.00 35.59 3.01
1701 2477 4.025401 CACGTTCAACTGGGGCGC 62.025 66.667 0.00 0.00 0.00 6.53
1702 2478 4.025401 GCACGTTCAACTGGGGCG 62.025 66.667 0.00 0.00 0.00 6.13
1703 2479 0.676782 ATAGCACGTTCAACTGGGGC 60.677 55.000 0.00 0.00 0.00 5.80
1704 2480 1.086696 CATAGCACGTTCAACTGGGG 58.913 55.000 0.00 0.00 0.00 4.96
1705 2481 0.447801 GCATAGCACGTTCAACTGGG 59.552 55.000 0.00 0.00 0.00 4.45
1706 2482 1.129251 CAGCATAGCACGTTCAACTGG 59.871 52.381 0.00 0.00 0.00 4.00
1707 2483 1.800586 ACAGCATAGCACGTTCAACTG 59.199 47.619 0.00 0.00 0.00 3.16
1708 2484 2.169832 ACAGCATAGCACGTTCAACT 57.830 45.000 0.00 0.00 0.00 3.16
1709 2485 2.574322 CAACAGCATAGCACGTTCAAC 58.426 47.619 0.00 0.00 0.00 3.18
1710 2486 1.535028 CCAACAGCATAGCACGTTCAA 59.465 47.619 0.00 0.00 0.00 2.69
1711 2487 1.155889 CCAACAGCATAGCACGTTCA 58.844 50.000 0.00 0.00 0.00 3.18
1712 2488 0.447801 CCCAACAGCATAGCACGTTC 59.552 55.000 0.00 0.00 0.00 3.95
1713 2489 1.586154 GCCCAACAGCATAGCACGTT 61.586 55.000 0.00 0.00 0.00 3.99
1714 2490 2.040544 GCCCAACAGCATAGCACGT 61.041 57.895 0.00 0.00 0.00 4.49
1715 2491 1.585267 TTGCCCAACAGCATAGCACG 61.585 55.000 0.00 0.00 43.64 5.34
1716 2492 0.109132 GTTGCCCAACAGCATAGCAC 60.109 55.000 6.29 0.00 43.64 4.40
1717 2493 1.585267 CGTTGCCCAACAGCATAGCA 61.585 55.000 11.27 0.00 43.64 3.49
1718 2494 1.137404 CGTTGCCCAACAGCATAGC 59.863 57.895 11.27 0.00 43.64 2.97
1719 2495 1.331756 GATCGTTGCCCAACAGCATAG 59.668 52.381 11.27 0.00 43.64 2.23
1720 2496 1.065491 AGATCGTTGCCCAACAGCATA 60.065 47.619 11.27 0.00 43.64 3.14
1721 2497 0.322816 AGATCGTTGCCCAACAGCAT 60.323 50.000 11.27 0.57 43.64 3.79
1722 2498 1.073025 AGATCGTTGCCCAACAGCA 59.927 52.632 11.27 0.00 41.20 4.41
1723 2499 1.503542 CAGATCGTTGCCCAACAGC 59.496 57.895 11.27 2.36 41.20 4.40
1724 2500 1.503542 GCAGATCGTTGCCCAACAG 59.496 57.895 11.27 4.76 41.20 3.16
1725 2501 2.324330 CGCAGATCGTTGCCCAACA 61.324 57.895 11.27 0.06 41.01 3.33
1726 2502 2.480555 CGCAGATCGTTGCCCAAC 59.519 61.111 1.66 1.12 41.01 3.77
1819 2596 3.955650 AGGGAGAATCGTTTTCTTCGA 57.044 42.857 5.16 0.00 41.45 3.71
1835 2612 3.009143 GCAAGGAAGAAGAAGGTAAGGGA 59.991 47.826 0.00 0.00 0.00 4.20
2069 2908 2.202610 CGTCGAGATGCAAGGCGA 60.203 61.111 0.00 0.00 34.63 5.54
2208 3047 7.168219 ACTGAAAACAGCTAGATAACAATGGA 58.832 34.615 0.00 0.00 0.00 3.41
2406 3247 3.132160 TGCTACGTCCGTCAATCAAAAA 58.868 40.909 0.00 0.00 0.00 1.94
2407 3248 2.756829 TGCTACGTCCGTCAATCAAAA 58.243 42.857 0.00 0.00 0.00 2.44
2408 3249 2.442212 TGCTACGTCCGTCAATCAAA 57.558 45.000 0.00 0.00 0.00 2.69
2409 3250 2.665649 ATGCTACGTCCGTCAATCAA 57.334 45.000 0.00 0.00 0.00 2.57
2410 3251 2.665649 AATGCTACGTCCGTCAATCA 57.334 45.000 0.00 0.00 0.00 2.57
2411 3252 4.142988 TGAAAAATGCTACGTCCGTCAATC 60.143 41.667 0.00 0.00 0.00 2.67
2412 3253 3.749088 TGAAAAATGCTACGTCCGTCAAT 59.251 39.130 0.00 0.00 0.00 2.57
2413 3254 3.132160 TGAAAAATGCTACGTCCGTCAA 58.868 40.909 0.00 0.00 0.00 3.18
2414 3255 2.734606 CTGAAAAATGCTACGTCCGTCA 59.265 45.455 0.00 0.00 0.00 4.35
2415 3256 2.735134 ACTGAAAAATGCTACGTCCGTC 59.265 45.455 0.00 0.00 0.00 4.79
2416 3257 2.762745 ACTGAAAAATGCTACGTCCGT 58.237 42.857 0.00 0.00 0.00 4.69
2417 3258 4.260212 CCATACTGAAAAATGCTACGTCCG 60.260 45.833 0.00 0.00 0.00 4.79
2418 3259 4.634443 ACCATACTGAAAAATGCTACGTCC 59.366 41.667 0.00 0.00 0.00 4.79
2419 3260 5.796350 ACCATACTGAAAAATGCTACGTC 57.204 39.130 0.00 0.00 0.00 4.34
2420 3261 5.619086 GCAACCATACTGAAAAATGCTACGT 60.619 40.000 0.00 0.00 0.00 3.57
2421 3262 4.793216 GCAACCATACTGAAAAATGCTACG 59.207 41.667 0.00 0.00 0.00 3.51
2422 3263 5.708948 TGCAACCATACTGAAAAATGCTAC 58.291 37.500 0.00 0.00 33.87 3.58
2423 3264 5.622007 GCTGCAACCATACTGAAAAATGCTA 60.622 40.000 0.00 0.00 33.87 3.49
2424 3265 4.813027 CTGCAACCATACTGAAAAATGCT 58.187 39.130 0.00 0.00 33.87 3.79
2425 3266 3.368843 GCTGCAACCATACTGAAAAATGC 59.631 43.478 0.00 0.00 0.00 3.56
2426 3267 4.813027 AGCTGCAACCATACTGAAAAATG 58.187 39.130 1.02 0.00 0.00 2.32
2427 3268 6.377996 TCATAGCTGCAACCATACTGAAAAAT 59.622 34.615 1.02 0.00 0.00 1.82
2428 3269 5.709631 TCATAGCTGCAACCATACTGAAAAA 59.290 36.000 1.02 0.00 0.00 1.94
2429 3270 5.123820 GTCATAGCTGCAACCATACTGAAAA 59.876 40.000 1.02 0.00 0.00 2.29
2430 3271 4.635765 GTCATAGCTGCAACCATACTGAAA 59.364 41.667 1.02 0.00 0.00 2.69
2431 3272 4.191544 GTCATAGCTGCAACCATACTGAA 58.808 43.478 1.02 0.00 0.00 3.02
2432 3273 3.737972 CGTCATAGCTGCAACCATACTGA 60.738 47.826 1.02 0.00 0.00 3.41
2433 3274 2.541346 CGTCATAGCTGCAACCATACTG 59.459 50.000 1.02 0.00 0.00 2.74
2434 3275 2.826428 CGTCATAGCTGCAACCATACT 58.174 47.619 1.02 0.00 0.00 2.12
2503 3344 0.675522 ACCCAAAATGCTACGACCGG 60.676 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.