Multiple sequence alignment - TraesCS3B01G335300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G335300 chr3B 100.000 5300 0 0 1 5300 541513504 541518803 0.000000e+00 9788.0
1 TraesCS3B01G335300 chr3B 91.304 253 16 5 4362 4611 518934130 518933881 1.830000e-89 340.0
2 TraesCS3B01G335300 chr3B 90.361 166 16 0 4720 4885 405872756 405872921 8.940000e-53 219.0
3 TraesCS3B01G335300 chr3B 88.554 166 19 0 4720 4885 738858659 738858824 9.000000e-48 202.0
4 TraesCS3B01G335300 chr3B 91.549 142 12 0 4186 4327 518934269 518934128 4.190000e-46 196.0
5 TraesCS3B01G335300 chr3B 92.481 133 10 0 4186 4318 515158110 515158242 1.950000e-44 191.0
6 TraesCS3B01G335300 chr3B 95.876 97 2 2 1762 1857 232569404 232569309 7.110000e-34 156.0
7 TraesCS3B01G335300 chr3D 94.152 2257 74 28 2488 4717 415535522 415537747 0.000000e+00 3384.0
8 TraesCS3B01G335300 chr3D 89.575 1717 92 47 127 1771 415533117 415534818 0.000000e+00 2098.0
9 TraesCS3B01G335300 chr3D 90.601 649 21 15 1854 2479 415534817 415535448 0.000000e+00 824.0
10 TraesCS3B01G335300 chr3D 89.520 229 16 4 5061 5286 415537961 415538184 3.120000e-72 283.0
11 TraesCS3B01G335300 chr3D 95.679 162 6 1 4885 5045 415537752 415537913 5.270000e-65 259.0
12 TraesCS3B01G335300 chr3D 98.837 86 1 0 1770 1855 322709964 322709879 2.560000e-33 154.0
13 TraesCS3B01G335300 chr3D 87.302 126 11 5 1770 1893 439870529 439870651 7.160000e-29 139.0
14 TraesCS3B01G335300 chr3A 94.433 1940 55 21 2817 4717 535005390 535003465 0.000000e+00 2935.0
15 TraesCS3B01G335300 chr3A 89.685 1493 61 46 341 1773 535007960 535006501 0.000000e+00 1818.0
16 TraesCS3B01G335300 chr3A 83.670 1041 59 51 1857 2818 535006501 535005493 0.000000e+00 878.0
17 TraesCS3B01G335300 chr3A 87.981 416 20 12 4886 5300 535003457 535003071 1.040000e-126 464.0
18 TraesCS3B01G335300 chr3A 92.116 241 15 3 4365 4604 146887153 146886916 2.360000e-88 337.0
19 TraesCS3B01G335300 chr3A 95.135 185 8 1 160 343 535008193 535008009 1.870000e-74 291.0
20 TraesCS3B01G335300 chr1B 84.382 429 31 21 4186 4611 556351092 556350697 6.440000e-104 388.0
21 TraesCS3B01G335300 chr1B 97.802 91 2 0 1770 1860 428074667 428074577 1.980000e-34 158.0
22 TraesCS3B01G335300 chr1A 92.829 251 13 4 4363 4611 137798521 137798274 5.050000e-95 359.0
23 TraesCS3B01G335300 chr1A 90.155 193 18 1 3866 4058 431033578 431033387 3.170000e-62 250.0
24 TraesCS3B01G335300 chr1A 91.729 133 11 0 4186 4318 137798661 137798529 9.060000e-43 185.0
25 TraesCS3B01G335300 chr6A 92.746 193 13 1 3866 4058 53511608 53511417 1.450000e-70 278.0
26 TraesCS3B01G335300 chrUn 92.553 188 11 3 4419 4604 4345581 4345395 3.150000e-67 267.0
27 TraesCS3B01G335300 chrUn 92.553 188 11 3 4419 4604 131818871 131819057 3.150000e-67 267.0
28 TraesCS3B01G335300 chrUn 92.553 188 11 3 4419 4604 378239921 378239735 3.150000e-67 267.0
29 TraesCS3B01G335300 chrUn 91.549 142 12 0 4186 4327 4347629 4347488 4.190000e-46 196.0
30 TraesCS3B01G335300 chrUn 91.549 142 12 0 4186 4327 123976789 123976648 4.190000e-46 196.0
31 TraesCS3B01G335300 chrUn 93.233 133 9 0 4186 4318 131816827 131816959 4.190000e-46 196.0
32 TraesCS3B01G335300 chrUn 94.828 58 2 1 4362 4418 4347490 4347433 7.310000e-14 89.8
33 TraesCS3B01G335300 chr1D 91.444 187 16 0 3872 4058 417918736 417918922 1.890000e-64 257.0
34 TraesCS3B01G335300 chr1D 90.741 162 15 0 4724 4885 118824271 118824110 3.210000e-52 217.0
35 TraesCS3B01G335300 chr6B 89.697 165 17 0 4724 4888 40457231 40457395 1.500000e-50 211.0
36 TraesCS3B01G335300 chr6B 88.824 170 18 1 4716 4885 678534514 678534682 1.930000e-49 207.0
37 TraesCS3B01G335300 chr6B 88.415 164 18 1 4723 4886 450150582 450150744 4.190000e-46 196.0
38 TraesCS3B01G335300 chr2B 88.554 166 19 0 4723 4888 379779067 379779232 9.000000e-48 202.0
39 TraesCS3B01G335300 chr2B 95.876 97 3 1 1770 1866 134499631 134499536 7.110000e-34 156.0
40 TraesCS3B01G335300 chr2B 94.118 102 5 1 1763 1864 153761001 153760901 2.560000e-33 154.0
41 TraesCS3B01G335300 chr7B 88.889 162 18 0 4724 4885 650608931 650609092 3.240000e-47 200.0
42 TraesCS3B01G335300 chr4D 88.415 164 18 1 4723 4885 474374150 474374313 4.190000e-46 196.0
43 TraesCS3B01G335300 chr4D 95.699 93 4 0 1770 1862 164649541 164649449 3.310000e-32 150.0
44 TraesCS3B01G335300 chr4B 93.233 133 9 0 4186 4318 183821313 183821445 4.190000e-46 196.0
45 TraesCS3B01G335300 chr5B 95.876 97 2 2 1767 1861 623100462 623100558 7.110000e-34 156.0
46 TraesCS3B01G335300 chr4A 97.753 89 2 0 1770 1858 521199433 521199521 2.560000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G335300 chr3B 541513504 541518803 5299 False 9788.0 9788 100.0000 1 5300 1 chr3B.!!$F3 5299
1 TraesCS3B01G335300 chr3D 415533117 415538184 5067 False 1369.6 3384 91.9054 127 5286 5 chr3D.!!$F2 5159
2 TraesCS3B01G335300 chr3A 535003071 535008193 5122 True 1277.2 2935 90.1808 160 5300 5 chr3A.!!$R2 5140
3 TraesCS3B01G335300 chrUn 131816827 131819057 2230 False 231.5 267 92.8930 4186 4604 2 chrUn.!!$F1 418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 968 0.317160 CTCCTTACACACACTCCGCA 59.683 55.0 0.00 0.00 0.00 5.69 F
1551 1675 0.466124 AGAGGAAGCTAATGCCGACC 59.534 55.0 0.00 0.00 40.80 4.79 F
2446 2657 0.108472 CTGCAGCACATTCGGAGAGA 60.108 55.0 0.00 0.00 38.43 3.10 F
2470 2681 0.188342 AGGACCCAACCAACTTGCAT 59.812 50.0 0.00 0.00 0.00 3.96 F
2569 2856 0.667993 ACCGCTCCAACATTGTTGTG 59.332 50.0 24.01 17.83 35.83 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2446 2657 0.104409 AGTTGGTTGGGTCCTCTCCT 60.104 55.000 0.00 0.00 0.0 3.69 R
2759 3057 0.315568 ATGCACGCCTAGCTAGCTAC 59.684 55.000 20.67 11.02 0.0 3.58 R
3690 4109 0.888619 TCACCAGCTCGTACTCCTTG 59.111 55.000 0.00 0.00 0.0 3.61 R
3819 4238 1.064946 GTCCGAGTCGATGCTGAGG 59.935 63.158 15.64 0.00 0.0 3.86 R
4306 4725 1.078848 ATCGAGTCCAACCAGCAGC 60.079 57.895 0.00 0.00 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.965572 AAAATGTCATGGCCGGATTG 57.034 45.000 5.05 0.00 0.00 2.67
29 30 0.461135 AAATGTCATGGCCGGATTGC 59.539 50.000 5.05 0.00 0.00 3.56
30 31 0.396139 AATGTCATGGCCGGATTGCT 60.396 50.000 5.05 0.00 0.00 3.91
31 32 0.396139 ATGTCATGGCCGGATTGCTT 60.396 50.000 5.05 0.00 0.00 3.91
32 33 1.031571 TGTCATGGCCGGATTGCTTC 61.032 55.000 5.05 0.00 0.00 3.86
33 34 1.819208 TCATGGCCGGATTGCTTCG 60.819 57.895 5.05 0.00 0.00 3.79
34 35 2.114670 CATGGCCGGATTGCTTCGT 61.115 57.895 5.05 0.00 0.00 3.85
35 36 2.114670 ATGGCCGGATTGCTTCGTG 61.115 57.895 5.05 0.00 0.00 4.35
36 37 4.179579 GGCCGGATTGCTTCGTGC 62.180 66.667 5.05 0.00 43.25 5.34
37 38 4.179579 GCCGGATTGCTTCGTGCC 62.180 66.667 5.05 0.00 42.00 5.01
38 39 2.745884 CCGGATTGCTTCGTGCCA 60.746 61.111 0.00 0.00 42.00 4.92
39 40 2.480555 CGGATTGCTTCGTGCCAC 59.519 61.111 1.30 0.00 42.00 5.01
40 41 2.034879 CGGATTGCTTCGTGCCACT 61.035 57.895 0.00 0.00 42.00 4.00
41 42 1.796796 GGATTGCTTCGTGCCACTC 59.203 57.895 0.00 0.00 42.00 3.51
42 43 1.421485 GATTGCTTCGTGCCACTCG 59.579 57.895 0.00 0.00 42.00 4.18
43 44 1.291877 GATTGCTTCGTGCCACTCGT 61.292 55.000 0.00 0.00 42.00 4.18
44 45 1.568612 ATTGCTTCGTGCCACTCGTG 61.569 55.000 0.00 0.00 42.00 4.35
45 46 2.661866 GCTTCGTGCCACTCGTGT 60.662 61.111 0.00 0.00 35.15 4.49
46 47 2.943345 GCTTCGTGCCACTCGTGTG 61.943 63.158 10.61 10.61 43.45 3.82
47 48 1.299850 CTTCGTGCCACTCGTGTGA 60.300 57.895 18.71 0.00 46.55 3.58
48 49 1.548973 CTTCGTGCCACTCGTGTGAC 61.549 60.000 18.71 8.10 46.55 3.67
49 50 2.279186 CGTGCCACTCGTGTGACA 60.279 61.111 18.71 10.86 46.55 3.58
50 51 3.319904 GTGCCACTCGTGTGACAC 58.680 61.111 18.75 18.75 46.80 3.67
51 52 3.216237 TGCCACTCGTGTGACACT 58.784 55.556 18.71 0.00 46.55 3.55
52 53 1.520192 TGCCACTCGTGTGACACTT 59.480 52.632 18.71 0.00 46.55 3.16
53 54 0.747852 TGCCACTCGTGTGACACTTA 59.252 50.000 18.71 0.81 46.55 2.24
54 55 1.343142 TGCCACTCGTGTGACACTTAT 59.657 47.619 18.71 0.00 46.55 1.73
55 56 1.993370 GCCACTCGTGTGACACTTATC 59.007 52.381 18.71 0.00 46.55 1.75
56 57 2.609491 GCCACTCGTGTGACACTTATCA 60.609 50.000 18.71 0.00 46.55 2.15
57 58 2.987149 CCACTCGTGTGACACTTATCAC 59.013 50.000 18.71 0.00 46.55 3.06
69 70 8.732746 GTGACACTTATCACTTGGGTATAAAT 57.267 34.615 0.00 0.00 44.71 1.40
70 71 9.826574 GTGACACTTATCACTTGGGTATAAATA 57.173 33.333 0.00 0.00 44.71 1.40
348 406 4.583489 AGATTAAGATGCTGGAAATGGCTG 59.417 41.667 0.00 0.00 0.00 4.85
355 413 0.820891 CTGGAAATGGCTGGATCGGG 60.821 60.000 0.00 0.00 0.00 5.14
409 467 3.256960 GGTCTCTGCCCACCCCAA 61.257 66.667 0.00 0.00 0.00 4.12
410 468 2.616458 GGTCTCTGCCCACCCCAAT 61.616 63.158 0.00 0.00 0.00 3.16
412 470 0.681243 GTCTCTGCCCACCCCAATTC 60.681 60.000 0.00 0.00 0.00 2.17
434 498 2.480416 GCTCAACTCGTTCTCATCGGAT 60.480 50.000 0.00 0.00 0.00 4.18
437 501 0.663688 ACTCGTTCTCATCGGATCGG 59.336 55.000 0.00 0.00 0.00 4.18
464 528 2.889617 CGTCGACACCTATGCCCA 59.110 61.111 17.16 0.00 0.00 5.36
548 612 1.105457 GTAAATGCATGAGCCAGCCA 58.895 50.000 0.00 0.00 41.13 4.75
549 613 1.684983 GTAAATGCATGAGCCAGCCAT 59.315 47.619 0.00 0.00 41.13 4.40
550 614 1.200519 AAATGCATGAGCCAGCCATT 58.799 45.000 0.00 0.00 41.13 3.16
551 615 2.076207 AATGCATGAGCCAGCCATTA 57.924 45.000 0.00 0.00 41.13 1.90
552 616 2.076207 ATGCATGAGCCAGCCATTAA 57.924 45.000 0.00 0.00 41.13 1.40
553 617 2.076207 TGCATGAGCCAGCCATTAAT 57.924 45.000 0.00 0.00 41.13 1.40
554 618 1.958579 TGCATGAGCCAGCCATTAATC 59.041 47.619 0.00 0.00 41.13 1.75
555 619 1.271656 GCATGAGCCAGCCATTAATCC 59.728 52.381 0.00 0.00 33.58 3.01
556 620 2.589720 CATGAGCCAGCCATTAATCCA 58.410 47.619 0.00 0.00 0.00 3.41
557 621 2.824689 TGAGCCAGCCATTAATCCAA 57.175 45.000 0.00 0.00 0.00 3.53
558 622 3.098774 TGAGCCAGCCATTAATCCAAA 57.901 42.857 0.00 0.00 0.00 3.28
571 646 7.364673 GCCATTAATCCAAAGGTAATCCAAAGT 60.365 37.037 0.00 0.00 35.89 2.66
579 654 4.138487 AGGTAATCCAAAGTTAGCGAGG 57.862 45.455 0.00 0.00 35.35 4.63
582 657 0.462047 ATCCAAAGTTAGCGAGGCCG 60.462 55.000 0.00 0.00 39.16 6.13
609 684 2.361104 GCGGAACCATCCAAGCCA 60.361 61.111 0.00 0.00 46.97 4.75
614 689 1.546029 GGAACCATCCAAGCCAAGTTC 59.454 52.381 0.00 0.00 45.79 3.01
847 925 2.642807 GCTGGCTCCCTATATAAACCCA 59.357 50.000 0.00 0.00 0.00 4.51
876 954 1.004200 CGTAACCAACCGCCTCCTT 60.004 57.895 0.00 0.00 0.00 3.36
890 968 0.317160 CTCCTTACACACACTCCGCA 59.683 55.000 0.00 0.00 0.00 5.69
936 1014 2.275380 GCCGGCAAGAAACACCCAT 61.275 57.895 24.80 0.00 0.00 4.00
951 1034 4.776322 CATCGACCCGCCCAGCAA 62.776 66.667 0.00 0.00 0.00 3.91
957 1040 3.977244 CCCGCCCAGCAACAACAC 61.977 66.667 0.00 0.00 0.00 3.32
1071 1158 3.991536 GAGGGTGAAGACGGCGCTC 62.992 68.421 6.90 3.86 35.61 5.03
1281 1368 2.439883 ACCTACGAGGACCTCCGC 60.440 66.667 16.13 0.00 37.67 5.54
1362 1449 1.371183 CGAGTTCTTGACCAGGCCA 59.629 57.895 5.01 0.00 0.00 5.36
1369 1456 0.620556 CTTGACCAGGCCAGTACCAT 59.379 55.000 5.01 0.00 0.00 3.55
1437 1544 6.128007 CCAGCACCGAGTACTCATTTAATTTT 60.128 38.462 22.37 0.00 0.00 1.82
1447 1554 9.077885 AGTACTCATTTAATTTTTCCTTGCTGA 57.922 29.630 0.00 0.00 0.00 4.26
1456 1563 5.443185 TTTTTCCTTGCTGAGTGAATGAG 57.557 39.130 0.00 0.00 0.00 2.90
1458 1565 4.890158 TTCCTTGCTGAGTGAATGAGTA 57.110 40.909 0.00 0.00 0.00 2.59
1479 1603 1.943340 GGCTAGCTGTTTCATAGTGGC 59.057 52.381 15.72 0.00 0.00 5.01
1503 1627 6.303022 GCCGGTAAATTGACGTTTTACTTAAC 59.697 38.462 16.73 3.42 38.81 2.01
1551 1675 0.466124 AGAGGAAGCTAATGCCGACC 59.534 55.000 0.00 0.00 40.80 4.79
1645 1776 6.183360 GCTAGCTCTCTTCTTACTGTCATCTT 60.183 42.308 7.70 0.00 0.00 2.40
1646 1777 6.207691 AGCTCTCTTCTTACTGTCATCTTC 57.792 41.667 0.00 0.00 0.00 2.87
1647 1778 5.951747 AGCTCTCTTCTTACTGTCATCTTCT 59.048 40.000 0.00 0.00 0.00 2.85
1687 1818 7.343316 TCCTTTAATTTGTTTTCTTCCTCACCA 59.657 33.333 0.00 0.00 0.00 4.17
1767 1903 6.400834 CGATCGATCTGCATCCAAATTAAGAG 60.401 42.308 22.43 0.00 0.00 2.85
1769 1905 6.115446 TCGATCTGCATCCAAATTAAGAGTT 58.885 36.000 0.00 0.00 0.00 3.01
1770 1906 7.272244 TCGATCTGCATCCAAATTAAGAGTTA 58.728 34.615 0.00 0.00 0.00 2.24
1771 1907 7.224753 TCGATCTGCATCCAAATTAAGAGTTAC 59.775 37.037 0.00 0.00 0.00 2.50
1772 1908 7.225538 CGATCTGCATCCAAATTAAGAGTTACT 59.774 37.037 0.00 0.00 0.00 2.24
1773 1909 7.849804 TCTGCATCCAAATTAAGAGTTACTC 57.150 36.000 3.85 3.85 0.00 2.59
1774 1910 7.624549 TCTGCATCCAAATTAAGAGTTACTCT 58.375 34.615 9.37 9.37 43.37 3.24
1775 1911 7.766278 TCTGCATCCAAATTAAGAGTTACTCTC 59.234 37.037 15.81 0.00 40.28 3.20
1786 1922 4.516365 GAGTTACTCTCTCCGTTCCAAA 57.484 45.455 4.94 0.00 39.86 3.28
1787 1923 4.879598 GAGTTACTCTCTCCGTTCCAAAA 58.120 43.478 4.94 0.00 39.86 2.44
1788 1924 5.480205 GAGTTACTCTCTCCGTTCCAAAAT 58.520 41.667 4.94 0.00 39.86 1.82
1789 1925 6.600882 AGTTACTCTCTCCGTTCCAAAATA 57.399 37.500 0.00 0.00 0.00 1.40
1790 1926 6.631962 AGTTACTCTCTCCGTTCCAAAATAG 58.368 40.000 0.00 0.00 0.00 1.73
1791 1927 6.436532 AGTTACTCTCTCCGTTCCAAAATAGA 59.563 38.462 0.00 0.00 0.00 1.98
1792 1928 5.941555 ACTCTCTCCGTTCCAAAATAGAT 57.058 39.130 0.00 0.00 0.00 1.98
1793 1929 5.665459 ACTCTCTCCGTTCCAAAATAGATG 58.335 41.667 0.00 0.00 0.00 2.90
1794 1930 5.422331 ACTCTCTCCGTTCCAAAATAGATGA 59.578 40.000 0.00 0.00 0.00 2.92
1795 1931 5.661458 TCTCTCCGTTCCAAAATAGATGAC 58.339 41.667 0.00 0.00 0.00 3.06
1796 1932 4.766375 TCTCCGTTCCAAAATAGATGACC 58.234 43.478 0.00 0.00 0.00 4.02
1797 1933 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1798 1934 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1799 1935 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1800 1936 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1801 1937 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1802 1938 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1803 1939 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1804 1940 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1805 1941 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1806 1942 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1807 1943 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1808 1944 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1809 1945 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1810 1946 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1811 1947 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
1812 1948 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
1813 1949 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
1815 1951 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
1816 1952 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
1817 1953 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
1818 1954 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
1819 1955 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
1845 1981 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1846 1982 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1847 1983 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1848 1984 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1849 1985 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1850 1986 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1851 1987 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1852 1988 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1880 2017 5.923204 AGAGATGCTAACCAAATCCTACTG 58.077 41.667 0.00 0.00 0.00 2.74
1925 2065 8.048534 TCACCTAATAAGTCTGTATATACGGC 57.951 38.462 15.76 11.21 32.63 5.68
1926 2066 7.886970 TCACCTAATAAGTCTGTATATACGGCT 59.113 37.037 15.76 13.01 32.63 5.52
1927 2067 7.968956 CACCTAATAAGTCTGTATATACGGCTG 59.031 40.741 15.76 0.00 32.63 4.85
2003 2159 5.364446 AGGCTTGGCAATCAATCATGAAATA 59.636 36.000 0.00 0.00 39.49 1.40
2037 2198 6.523201 CACATGCTAAAAATAACGGAACAGAC 59.477 38.462 0.00 0.00 0.00 3.51
2038 2199 6.205853 ACATGCTAAAAATAACGGAACAGACA 59.794 34.615 0.00 0.00 0.00 3.41
2039 2200 6.811253 TGCTAAAAATAACGGAACAGACAT 57.189 33.333 0.00 0.00 0.00 3.06
2041 2202 5.511729 GCTAAAAATAACGGAACAGACATGC 59.488 40.000 0.00 0.00 0.00 4.06
2042 2203 5.446143 AAAAATAACGGAACAGACATGCA 57.554 34.783 0.00 0.00 0.00 3.96
2043 2204 5.643379 AAAATAACGGAACAGACATGCAT 57.357 34.783 0.00 0.00 0.00 3.96
2044 2205 4.621068 AATAACGGAACAGACATGCATG 57.379 40.909 25.09 25.09 0.00 4.06
2045 2206 2.183478 AACGGAACAGACATGCATGA 57.817 45.000 32.75 0.00 0.00 3.07
2046 2207 2.408271 ACGGAACAGACATGCATGAT 57.592 45.000 32.75 17.55 0.00 2.45
2047 2208 2.011947 ACGGAACAGACATGCATGATG 58.988 47.619 32.75 28.17 38.15 3.07
2052 2218 1.212195 ACAGACATGCATGATGGAGCT 59.788 47.619 32.75 15.33 36.23 4.09
2091 2261 0.617249 CCTCCTTCCTGACCTCAGCT 60.617 60.000 0.00 0.00 42.47 4.24
2227 2405 2.200092 GGCGATCCCTCTCCCTCT 59.800 66.667 0.00 0.00 0.00 3.69
2396 2607 1.153269 TGACAAGGCGACAAGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
2446 2657 0.108472 CTGCAGCACATTCGGAGAGA 60.108 55.000 0.00 0.00 38.43 3.10
2450 2661 1.110442 AGCACATTCGGAGAGAGGAG 58.890 55.000 0.00 0.00 38.43 3.69
2470 2681 0.188342 AGGACCCAACCAACTTGCAT 59.812 50.000 0.00 0.00 0.00 3.96
2476 2687 5.240844 GGACCCAACCAACTTGCATATATAC 59.759 44.000 0.00 0.00 0.00 1.47
2478 2689 6.372931 ACCCAACCAACTTGCATATATACAT 58.627 36.000 0.00 0.00 0.00 2.29
2480 2691 8.001875 ACCCAACCAACTTGCATATATACATAA 58.998 33.333 0.00 0.00 0.00 1.90
2481 2692 8.855110 CCCAACCAACTTGCATATATACATAAA 58.145 33.333 0.00 0.00 0.00 1.40
2482 2693 9.677567 CCAACCAACTTGCATATATACATAAAC 57.322 33.333 0.00 0.00 0.00 2.01
2569 2856 0.667993 ACCGCTCCAACATTGTTGTG 59.332 50.000 24.01 17.83 35.83 3.33
2573 2860 3.687212 CCGCTCCAACATTGTTGTGTATA 59.313 43.478 24.01 7.04 35.83 1.47
2574 2861 4.335315 CCGCTCCAACATTGTTGTGTATAT 59.665 41.667 24.01 0.00 35.83 0.86
2575 2862 5.525745 CCGCTCCAACATTGTTGTGTATATA 59.474 40.000 24.01 4.20 35.83 0.86
2576 2863 6.204688 CCGCTCCAACATTGTTGTGTATATAT 59.795 38.462 24.01 0.00 35.83 0.86
2577 2864 7.386573 CCGCTCCAACATTGTTGTGTATATATA 59.613 37.037 24.01 0.00 35.83 0.86
2609 2896 3.242478 CGAAAAGAACGGTGCAACAACTA 60.242 43.478 0.98 0.00 39.98 2.24
2618 2905 2.226602 TGCAACAACTACGCACTGTA 57.773 45.000 0.00 0.00 0.00 2.74
2620 2907 2.478514 TGCAACAACTACGCACTGTATG 59.521 45.455 0.00 0.00 31.20 2.39
2621 2908 2.478894 GCAACAACTACGCACTGTATGT 59.521 45.455 0.00 0.00 29.56 2.29
2622 2909 3.676172 GCAACAACTACGCACTGTATGTA 59.324 43.478 0.00 0.00 28.58 2.29
2648 2935 2.743664 TGATCAGTTGGTCAAATGCTCG 59.256 45.455 6.31 0.00 35.21 5.03
2749 3047 4.422073 TCCGGATCAATGATTAGCACTT 57.578 40.909 0.00 0.00 0.00 3.16
2800 3102 7.125507 TGCATCAAATTCAAATTGGGGTAGTAT 59.874 33.333 0.00 0.00 0.00 2.12
2900 3313 3.639672 TGCATGAGTGACTGATTGGAT 57.360 42.857 0.00 0.00 0.00 3.41
3091 3504 4.323477 TGTACACCAGCCCCACGC 62.323 66.667 0.00 0.00 37.98 5.34
3413 3826 1.532794 GGATGTGGCCCAACACCAA 60.533 57.895 0.00 0.00 39.39 3.67
3480 3893 2.082354 GCTCAAGTTCTACAGCGGC 58.918 57.895 0.00 0.00 0.00 6.53
3516 3929 1.226974 CACCATGTACGCCTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
3534 3947 1.153549 GGAGTGCTACTTCGGGCTG 60.154 63.158 0.00 0.00 0.00 4.85
3819 4238 4.430423 CGGCGCAAGAACGTGCTC 62.430 66.667 10.83 3.12 42.62 4.26
4068 4487 2.707849 GGAGGCGCTCAACTCGGTA 61.708 63.158 7.64 0.00 34.58 4.02
4200 4619 3.118454 CAGTACAAGGCGCCACGG 61.118 66.667 31.54 19.65 0.00 4.94
4305 4724 1.966451 GCCCAAGAAGTGACCACCG 60.966 63.158 0.00 0.00 0.00 4.94
4306 4725 1.302511 CCCAAGAAGTGACCACCGG 60.303 63.158 0.00 0.00 0.00 5.28
4318 4737 4.641645 CACCGGCTGCTGGTTGGA 62.642 66.667 29.94 0.00 40.77 3.53
4319 4738 4.643387 ACCGGCTGCTGGTTGGAC 62.643 66.667 27.12 0.00 40.77 4.02
4321 4740 2.743928 CGGCTGCTGGTTGGACTC 60.744 66.667 0.00 0.00 0.00 3.36
4324 4743 1.078848 GCTGCTGGTTGGACTCGAT 60.079 57.895 0.00 0.00 0.00 3.59
4325 4744 1.086634 GCTGCTGGTTGGACTCGATC 61.087 60.000 0.00 0.00 0.00 3.69
4356 4775 0.109919 CGGATTATGGCGTCGATCGA 60.110 55.000 15.15 15.15 42.86 3.59
4405 4830 6.961360 TTCAGCTAGCATACATACACTACT 57.039 37.500 18.83 0.00 0.00 2.57
4406 4831 6.961360 TCAGCTAGCATACATACACTACTT 57.039 37.500 18.83 0.00 0.00 2.24
4453 6728 9.947897 GTGTCTACTAAAATAATGTGTTGTACG 57.052 33.333 0.00 0.00 0.00 3.67
4454 6729 9.911138 TGTCTACTAAAATAATGTGTTGTACGA 57.089 29.630 0.00 0.00 0.00 3.43
4567 6861 9.400638 CTAGTAGTTACTAATGCAACTATCTGC 57.599 37.037 2.37 0.00 39.20 4.26
4717 7013 9.142515 CTTTGTTGACGTACCTACATTACATAA 57.857 33.333 0.00 0.00 0.00 1.90
4718 7014 8.464770 TTGTTGACGTACCTACATTACATAAC 57.535 34.615 0.00 0.00 0.00 1.89
4719 7015 7.829725 TGTTGACGTACCTACATTACATAACT 58.170 34.615 0.00 0.00 0.00 2.24
4720 7016 8.955388 TGTTGACGTACCTACATTACATAACTA 58.045 33.333 0.00 0.00 0.00 2.24
4721 7017 9.443283 GTTGACGTACCTACATTACATAACTAG 57.557 37.037 0.00 0.00 0.00 2.57
4722 7018 8.158169 TGACGTACCTACATTACATAACTAGG 57.842 38.462 0.00 0.00 0.00 3.02
4723 7019 7.775093 TGACGTACCTACATTACATAACTAGGT 59.225 37.037 11.82 11.82 40.31 3.08
4724 7020 9.273016 GACGTACCTACATTACATAACTAGGTA 57.727 37.037 10.48 10.48 38.51 3.08
4728 7024 8.703378 ACCTACATTACATAACTAGGTACTCC 57.297 38.462 0.00 0.00 41.75 3.85
4729 7025 7.727634 ACCTACATTACATAACTAGGTACTCCC 59.272 40.741 0.00 0.00 41.75 4.30
4731 7027 7.836479 ACATTACATAACTAGGTACTCCCTC 57.164 40.000 0.00 0.00 44.81 4.30
4732 7028 6.781507 ACATTACATAACTAGGTACTCCCTCC 59.218 42.308 0.00 0.00 44.81 4.30
4733 7029 3.830121 ACATAACTAGGTACTCCCTCCG 58.170 50.000 0.00 0.00 44.81 4.63
4734 7030 3.203934 ACATAACTAGGTACTCCCTCCGT 59.796 47.826 0.00 0.00 44.81 4.69
4735 7031 2.915657 AACTAGGTACTCCCTCCGTT 57.084 50.000 0.00 0.00 44.81 4.44
4736 7032 2.433662 ACTAGGTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 44.81 3.95
4737 7033 1.064091 ACTAGGTACTCCCTCCGTTCC 60.064 57.143 0.00 0.00 44.81 3.62
4738 7034 1.214923 CTAGGTACTCCCTCCGTTCCT 59.785 57.143 0.00 0.00 44.81 3.36
4739 7035 1.302907 AGGTACTCCCTCCGTTCCTA 58.697 55.000 0.00 0.00 40.71 2.94
4740 7036 1.642762 AGGTACTCCCTCCGTTCCTAA 59.357 52.381 0.00 0.00 40.71 2.69
4741 7037 2.043526 AGGTACTCCCTCCGTTCCTAAA 59.956 50.000 0.00 0.00 40.71 1.85
4742 7038 3.036819 GGTACTCCCTCCGTTCCTAAAT 58.963 50.000 0.00 0.00 0.00 1.40
4743 7039 4.078980 AGGTACTCCCTCCGTTCCTAAATA 60.079 45.833 0.00 0.00 40.71 1.40
4744 7040 4.837298 GGTACTCCCTCCGTTCCTAAATAT 59.163 45.833 0.00 0.00 0.00 1.28
4745 7041 6.012745 GGTACTCCCTCCGTTCCTAAATATA 58.987 44.000 0.00 0.00 0.00 0.86
4746 7042 6.494835 GGTACTCCCTCCGTTCCTAAATATAA 59.505 42.308 0.00 0.00 0.00 0.98
4747 7043 7.179872 GGTACTCCCTCCGTTCCTAAATATAAT 59.820 40.741 0.00 0.00 0.00 1.28
4748 7044 7.628501 ACTCCCTCCGTTCCTAAATATAATT 57.371 36.000 0.00 0.00 0.00 1.40
4749 7045 8.042286 ACTCCCTCCGTTCCTAAATATAATTT 57.958 34.615 0.00 0.00 0.00 1.82
4750 7046 8.500238 ACTCCCTCCGTTCCTAAATATAATTTT 58.500 33.333 0.00 0.00 0.00 1.82
4751 7047 9.350951 CTCCCTCCGTTCCTAAATATAATTTTT 57.649 33.333 0.00 0.00 0.00 1.94
4773 7069 7.463961 TTTTCTAGAGATTTCACTACGGACT 57.536 36.000 0.00 0.00 0.00 3.85
4774 7070 8.571461 TTTTCTAGAGATTTCACTACGGACTA 57.429 34.615 0.00 0.00 0.00 2.59
4775 7071 8.749026 TTTCTAGAGATTTCACTACGGACTAT 57.251 34.615 0.00 0.00 0.00 2.12
4776 7072 9.842775 TTTCTAGAGATTTCACTACGGACTATA 57.157 33.333 0.00 0.00 0.00 1.31
4781 7077 9.570468 AGAGATTTCACTACGGACTATATACAA 57.430 33.333 0.00 0.00 0.00 2.41
4784 7080 8.813643 ATTTCACTACGGACTATATACAAAGC 57.186 34.615 0.00 0.00 0.00 3.51
4785 7081 6.947644 TCACTACGGACTATATACAAAGCA 57.052 37.500 0.00 0.00 0.00 3.91
4786 7082 7.337480 TCACTACGGACTATATACAAAGCAA 57.663 36.000 0.00 0.00 0.00 3.91
4787 7083 7.774134 TCACTACGGACTATATACAAAGCAAA 58.226 34.615 0.00 0.00 0.00 3.68
4788 7084 8.252417 TCACTACGGACTATATACAAAGCAAAA 58.748 33.333 0.00 0.00 0.00 2.44
4789 7085 9.042008 CACTACGGACTATATACAAAGCAAAAT 57.958 33.333 0.00 0.00 0.00 1.82
4790 7086 9.042008 ACTACGGACTATATACAAAGCAAAATG 57.958 33.333 0.00 0.00 0.00 2.32
4791 7087 9.256477 CTACGGACTATATACAAAGCAAAATGA 57.744 33.333 0.00 0.00 0.00 2.57
4792 7088 8.142994 ACGGACTATATACAAAGCAAAATGAG 57.857 34.615 0.00 0.00 0.00 2.90
4793 7089 7.769044 ACGGACTATATACAAAGCAAAATGAGT 59.231 33.333 0.00 0.00 0.00 3.41
4794 7090 8.064222 CGGACTATATACAAAGCAAAATGAGTG 58.936 37.037 0.00 0.00 0.00 3.51
4795 7091 9.109393 GGACTATATACAAAGCAAAATGAGTGA 57.891 33.333 0.00 0.00 0.00 3.41
4798 7094 9.722056 CTATATACAAAGCAAAATGAGTGAACC 57.278 33.333 0.00 0.00 0.00 3.62
4799 7095 6.655078 ATACAAAGCAAAATGAGTGAACCT 57.345 33.333 0.00 0.00 0.00 3.50
4800 7096 4.685924 ACAAAGCAAAATGAGTGAACCTG 58.314 39.130 0.00 0.00 0.00 4.00
4801 7097 4.053295 CAAAGCAAAATGAGTGAACCTGG 58.947 43.478 0.00 0.00 0.00 4.45
4802 7098 3.228188 AGCAAAATGAGTGAACCTGGA 57.772 42.857 0.00 0.00 0.00 3.86
4803 7099 2.887152 AGCAAAATGAGTGAACCTGGAC 59.113 45.455 0.00 0.00 0.00 4.02
4804 7100 2.887152 GCAAAATGAGTGAACCTGGACT 59.113 45.455 0.00 0.00 0.00 3.85
4805 7101 3.057946 GCAAAATGAGTGAACCTGGACTC 60.058 47.826 0.00 3.71 39.31 3.36
4806 7102 4.392940 CAAAATGAGTGAACCTGGACTCT 58.607 43.478 13.32 7.47 39.54 3.24
4807 7103 5.551233 CAAAATGAGTGAACCTGGACTCTA 58.449 41.667 13.32 3.32 39.54 2.43
4808 7104 5.825593 AAATGAGTGAACCTGGACTCTAA 57.174 39.130 13.32 2.68 39.54 2.10
4809 7105 5.825593 AATGAGTGAACCTGGACTCTAAA 57.174 39.130 13.32 0.00 39.54 1.85
4810 7106 4.873746 TGAGTGAACCTGGACTCTAAAG 57.126 45.455 13.32 0.00 39.54 1.85
4811 7107 4.223953 TGAGTGAACCTGGACTCTAAAGT 58.776 43.478 13.32 0.00 39.54 2.66
4812 7108 5.391256 TGAGTGAACCTGGACTCTAAAGTA 58.609 41.667 13.32 0.00 39.54 2.24
4813 7109 5.243283 TGAGTGAACCTGGACTCTAAAGTAC 59.757 44.000 13.32 0.00 39.54 2.73
4814 7110 4.217983 AGTGAACCTGGACTCTAAAGTACG 59.782 45.833 0.00 0.00 39.45 3.67
4815 7111 4.022503 GTGAACCTGGACTCTAAAGTACGT 60.023 45.833 0.00 0.00 39.45 3.57
4816 7112 4.217118 TGAACCTGGACTCTAAAGTACGTC 59.783 45.833 0.00 0.00 39.45 4.34
4817 7113 4.031636 ACCTGGACTCTAAAGTACGTCT 57.968 45.455 0.00 0.00 39.45 4.18
4818 7114 5.171339 ACCTGGACTCTAAAGTACGTCTA 57.829 43.478 0.00 0.00 39.45 2.59
4819 7115 5.753716 ACCTGGACTCTAAAGTACGTCTAT 58.246 41.667 0.00 0.00 39.45 1.98
4820 7116 6.893583 ACCTGGACTCTAAAGTACGTCTATA 58.106 40.000 0.00 0.00 39.45 1.31
4821 7117 7.516452 ACCTGGACTCTAAAGTACGTCTATAT 58.484 38.462 0.00 0.00 39.45 0.86
4822 7118 8.654997 ACCTGGACTCTAAAGTACGTCTATATA 58.345 37.037 0.00 0.00 39.45 0.86
4823 7119 8.934825 CCTGGACTCTAAAGTACGTCTATATAC 58.065 40.741 0.00 0.00 39.45 1.47
4824 7120 9.486497 CTGGACTCTAAAGTACGTCTATATACA 57.514 37.037 0.00 0.00 39.45 2.29
4847 7143 8.445275 ACATCCATATGTAGTTCGCATTAAAA 57.555 30.769 1.24 0.00 44.66 1.52
4848 7144 9.066892 ACATCCATATGTAGTTCGCATTAAAAT 57.933 29.630 1.24 0.00 44.66 1.82
4849 7145 9.546909 CATCCATATGTAGTTCGCATTAAAATC 57.453 33.333 1.24 0.00 0.00 2.17
4850 7146 8.902540 TCCATATGTAGTTCGCATTAAAATCT 57.097 30.769 1.24 0.00 0.00 2.40
4851 7147 8.988934 TCCATATGTAGTTCGCATTAAAATCTC 58.011 33.333 1.24 0.00 0.00 2.75
4852 7148 8.993121 CCATATGTAGTTCGCATTAAAATCTCT 58.007 33.333 1.24 0.00 0.00 3.10
4856 7152 9.817809 ATGTAGTTCGCATTAAAATCTCTAGAA 57.182 29.630 0.00 0.00 0.00 2.10
4857 7153 9.647797 TGTAGTTCGCATTAAAATCTCTAGAAA 57.352 29.630 0.00 0.00 0.00 2.52
4860 7156 8.874816 AGTTCGCATTAAAATCTCTAGAAAGAC 58.125 33.333 0.00 0.00 0.00 3.01
4861 7157 8.874816 GTTCGCATTAAAATCTCTAGAAAGACT 58.125 33.333 0.00 0.00 0.00 3.24
4862 7158 9.436957 TTCGCATTAAAATCTCTAGAAAGACTT 57.563 29.630 0.00 0.00 0.00 3.01
4875 7171 9.291664 CTCTAGAAAGACTTACATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
4876 7172 8.248945 TCTAGAAAGACTTACATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
4877 7173 7.001099 AGAAAGACTTACATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4878 7174 7.097834 AGAAAGACTTACATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4879 7175 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4880 7176 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4881 7177 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4882 7178 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4883 7179 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
4960 7257 5.236655 CGGAGCATCGTCATACTACATAT 57.763 43.478 0.00 0.00 34.37 1.78
5045 7343 3.059325 GCATGTCTGTCTGTTGTTGACTC 60.059 47.826 0.00 0.00 35.63 3.36
5050 7348 6.345298 TGTCTGTCTGTTGTTGACTCAATTA 58.655 36.000 0.00 0.00 35.63 1.40
5132 7463 9.987272 AAAATGATTCCTCTGGTTAAAAGAAAG 57.013 29.630 0.00 0.00 0.00 2.62
5166 7497 5.591067 GTCACTAATCTAGTACTGAGTGGCT 59.409 44.000 5.39 0.00 36.76 4.75
5175 7506 3.878103 AGTACTGAGTGGCTCTACATACG 59.122 47.826 0.00 0.00 0.00 3.06
5176 7507 2.724454 ACTGAGTGGCTCTACATACGT 58.276 47.619 0.00 0.00 0.00 3.57
5177 7508 3.882444 ACTGAGTGGCTCTACATACGTA 58.118 45.455 0.00 0.00 0.00 3.57
5178 7509 3.626670 ACTGAGTGGCTCTACATACGTAC 59.373 47.826 0.00 0.00 0.00 3.67
5182 7515 4.462133 AGTGGCTCTACATACGTACATCT 58.538 43.478 0.00 0.00 0.00 2.90
5186 7519 3.667430 GCTCTACATACGTACATCTCGCC 60.667 52.174 0.00 0.00 0.00 5.54
5189 7522 0.959553 CATACGTACATCTCGCCCCT 59.040 55.000 0.00 0.00 0.00 4.79
5243 7576 7.487189 GTGGTTGCTCTCAATTCTGAAATAATG 59.513 37.037 0.00 0.00 34.29 1.90
5244 7577 7.394077 TGGTTGCTCTCAATTCTGAAATAATGA 59.606 33.333 0.00 0.00 34.29 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.134729 GCAATCCGGCCATGACATTTT 60.135 47.619 2.24 0.00 0.00 1.82
11 12 0.396139 AGCAATCCGGCCATGACATT 60.396 50.000 2.24 0.00 0.00 2.71
12 13 0.396139 AAGCAATCCGGCCATGACAT 60.396 50.000 2.24 0.00 0.00 3.06
14 15 1.729881 GAAGCAATCCGGCCATGAC 59.270 57.895 2.24 0.00 0.00 3.06
16 17 2.114670 ACGAAGCAATCCGGCCATG 61.115 57.895 2.24 0.00 0.00 3.66
17 18 2.114670 CACGAAGCAATCCGGCCAT 61.115 57.895 2.24 0.00 0.00 4.40
18 19 2.745884 CACGAAGCAATCCGGCCA 60.746 61.111 2.24 0.00 0.00 5.36
19 20 4.179579 GCACGAAGCAATCCGGCC 62.180 66.667 0.00 0.00 44.79 6.13
28 29 2.661866 ACACGAGTGGCACGAAGC 60.662 61.111 12.71 2.49 44.65 3.86
29 30 1.299850 TCACACGAGTGGCACGAAG 60.300 57.895 12.71 10.03 45.91 3.79
30 31 2.809010 TCACACGAGTGGCACGAA 59.191 55.556 12.71 0.00 45.91 3.85
36 37 2.987149 GTGATAAGTGTCACACGAGTGG 59.013 50.000 13.14 0.00 46.04 4.00
44 45 8.732746 ATTTATACCCAAGTGATAAGTGTCAC 57.267 34.615 0.00 0.00 46.90 3.67
154 155 0.608640 CCGTGCTGATATCTACCCCC 59.391 60.000 3.98 0.00 0.00 5.40
155 156 1.339097 ACCGTGCTGATATCTACCCC 58.661 55.000 3.98 0.00 0.00 4.95
156 157 2.095364 CGTACCGTGCTGATATCTACCC 60.095 54.545 3.98 0.00 0.00 3.69
157 158 2.095364 CCGTACCGTGCTGATATCTACC 60.095 54.545 3.98 0.00 0.00 3.18
158 159 2.810274 TCCGTACCGTGCTGATATCTAC 59.190 50.000 3.98 0.33 0.00 2.59
167 168 0.172803 GATTGACTCCGTACCGTGCT 59.827 55.000 0.00 0.00 0.00 4.40
168 169 0.172803 AGATTGACTCCGTACCGTGC 59.827 55.000 0.00 0.00 0.00 5.34
355 413 1.269778 GCTTTCTTGTCTTTGGGTGGC 60.270 52.381 0.00 0.00 0.00 5.01
407 465 2.731451 TGAGAACGAGTTGAGCGAATTG 59.269 45.455 0.00 0.00 0.00 2.32
408 466 3.026630 TGAGAACGAGTTGAGCGAATT 57.973 42.857 0.00 0.00 0.00 2.17
409 467 2.724977 TGAGAACGAGTTGAGCGAAT 57.275 45.000 0.00 0.00 0.00 3.34
410 468 2.596452 GATGAGAACGAGTTGAGCGAA 58.404 47.619 0.00 0.00 0.00 4.70
412 470 0.910513 CGATGAGAACGAGTTGAGCG 59.089 55.000 0.00 0.00 0.00 5.03
464 528 2.919328 GCAGGGGTTTTGCTGCCT 60.919 61.111 0.00 0.00 38.51 4.75
549 613 8.745590 GCTAACTTTGGATTACCTTTGGATTAA 58.254 33.333 0.00 0.00 37.04 1.40
550 614 7.066525 CGCTAACTTTGGATTACCTTTGGATTA 59.933 37.037 0.00 0.00 37.04 1.75
551 615 6.127730 CGCTAACTTTGGATTACCTTTGGATT 60.128 38.462 0.00 0.00 37.04 3.01
552 616 5.357032 CGCTAACTTTGGATTACCTTTGGAT 59.643 40.000 0.00 0.00 37.04 3.41
553 617 4.698304 CGCTAACTTTGGATTACCTTTGGA 59.302 41.667 0.00 0.00 37.04 3.53
554 618 4.698304 TCGCTAACTTTGGATTACCTTTGG 59.302 41.667 0.00 0.00 37.04 3.28
555 619 5.163754 CCTCGCTAACTTTGGATTACCTTTG 60.164 44.000 0.00 0.00 37.04 2.77
556 620 4.941873 CCTCGCTAACTTTGGATTACCTTT 59.058 41.667 0.00 0.00 37.04 3.11
557 621 4.514401 CCTCGCTAACTTTGGATTACCTT 58.486 43.478 0.00 0.00 37.04 3.50
558 622 3.681874 GCCTCGCTAACTTTGGATTACCT 60.682 47.826 0.00 0.00 37.04 3.08
609 684 2.737503 CCAAAGCCTGGCTGAACTT 58.262 52.632 24.16 9.96 39.62 2.66
828 905 3.850173 GGATGGGTTTATATAGGGAGCCA 59.150 47.826 12.98 12.98 43.05 4.75
847 925 0.912487 TTGGTTACGGGAGGCTGGAT 60.912 55.000 0.00 0.00 0.00 3.41
876 954 0.178301 TGGTTTGCGGAGTGTGTGTA 59.822 50.000 0.00 0.00 0.00 2.90
890 968 1.063266 TCTGGCTGGAAGGTTTGGTTT 60.063 47.619 0.00 0.00 0.00 3.27
951 1034 3.923864 TCGCCCGAGCTGTGTTGT 61.924 61.111 0.00 0.00 36.60 3.32
1046 1133 2.606519 TCTTCACCCTCCCCACCG 60.607 66.667 0.00 0.00 0.00 4.94
1049 1136 2.606519 CCGTCTTCACCCTCCCCA 60.607 66.667 0.00 0.00 0.00 4.96
1053 1140 3.991536 GAGCGCCGTCTTCACCCTC 62.992 68.421 2.29 0.00 0.00 4.30
1054 1141 4.070552 GAGCGCCGTCTTCACCCT 62.071 66.667 2.29 0.00 0.00 4.34
1281 1368 3.905705 GATGCGCTCGATCTCCGGG 62.906 68.421 9.73 0.00 42.94 5.73
1362 1449 0.043334 AGGGAGAGGTGCATGGTACT 59.957 55.000 0.00 0.00 0.00 2.73
1369 1456 2.284921 CAGGGAGGGAGAGGTGCA 60.285 66.667 0.00 0.00 0.00 4.57
1437 1544 3.777106 ACTCATTCACTCAGCAAGGAA 57.223 42.857 0.00 0.00 0.00 3.36
1447 1554 3.370104 ACAGCTAGCCTACTCATTCACT 58.630 45.455 12.13 0.00 0.00 3.41
1456 1563 4.372656 CCACTATGAAACAGCTAGCCTAC 58.627 47.826 12.13 0.00 0.00 3.18
1458 1565 2.420687 GCCACTATGAAACAGCTAGCCT 60.421 50.000 12.13 0.00 0.00 4.58
1479 1603 7.575365 AGTTAAGTAAAACGTCAATTTACCGG 58.425 34.615 14.67 0.00 41.83 5.28
1503 1627 1.592669 CGTCCCCGAGCTGCATTAG 60.593 63.158 1.02 0.00 35.63 1.73
1551 1675 0.749049 TGTCCAGCTCATCCTCGATG 59.251 55.000 0.00 0.00 41.00 3.84
1660 1791 7.867909 GGTGAGGAAGAAAACAAATTAAAGGAG 59.132 37.037 0.00 0.00 0.00 3.69
1662 1793 7.496747 TGGTGAGGAAGAAAACAAATTAAAGG 58.503 34.615 0.00 0.00 0.00 3.11
1687 1818 4.674101 CGTCGGTGCAATCAACCAAATTAT 60.674 41.667 0.00 0.00 0.00 1.28
1767 1903 6.628185 TCTATTTTGGAACGGAGAGAGTAAC 58.372 40.000 0.00 0.00 0.00 2.50
1769 1905 6.605995 TCATCTATTTTGGAACGGAGAGAGTA 59.394 38.462 0.00 0.00 0.00 2.59
1770 1906 5.422331 TCATCTATTTTGGAACGGAGAGAGT 59.578 40.000 0.00 0.00 0.00 3.24
1771 1907 5.751028 GTCATCTATTTTGGAACGGAGAGAG 59.249 44.000 0.00 0.00 0.00 3.20
1772 1908 5.395324 GGTCATCTATTTTGGAACGGAGAGA 60.395 44.000 0.00 0.00 0.00 3.10
1773 1909 4.811557 GGTCATCTATTTTGGAACGGAGAG 59.188 45.833 0.00 0.00 0.00 3.20
1774 1910 4.383770 GGGTCATCTATTTTGGAACGGAGA 60.384 45.833 0.00 0.00 0.00 3.71
1775 1911 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1776 1912 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1777 1913 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1778 1914 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1779 1915 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1780 1916 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1781 1917 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1782 1918 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1783 1919 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1784 1920 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1785 1921 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
1786 1922 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
1787 1923 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
1788 1924 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
1789 1925 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
1790 1926 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
1791 1927 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
1792 1928 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
1793 1929 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
1819 1955 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
1820 1956 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1821 1957 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1822 1958 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1823 1959 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1824 1960 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1825 1961 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1826 1962 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1827 1963 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1828 1964 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1829 1965 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1830 1966 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1831 1967 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1832 1968 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1833 1969 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1834 1970 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
1835 1971 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1836 1972 4.778958 TCTAATACTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
1837 1973 4.355549 TCTAATACTCCCTCCGTTCCAAA 58.644 43.478 0.00 0.00 0.00 3.28
1838 1974 3.958798 CTCTAATACTCCCTCCGTTCCAA 59.041 47.826 0.00 0.00 0.00 3.53
1839 1975 3.203710 TCTCTAATACTCCCTCCGTTCCA 59.796 47.826 0.00 0.00 0.00 3.53
1840 1976 3.830121 TCTCTAATACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
1841 1977 4.321378 GCATCTCTAATACTCCCTCCGTTC 60.321 50.000 0.00 0.00 0.00 3.95
1842 1978 3.574826 GCATCTCTAATACTCCCTCCGTT 59.425 47.826 0.00 0.00 0.00 4.44
1843 1979 3.158676 GCATCTCTAATACTCCCTCCGT 58.841 50.000 0.00 0.00 0.00 4.69
1844 1980 3.426615 AGCATCTCTAATACTCCCTCCG 58.573 50.000 0.00 0.00 0.00 4.63
1845 1981 5.186215 GGTTAGCATCTCTAATACTCCCTCC 59.814 48.000 0.00 0.00 39.29 4.30
1846 1982 5.775701 TGGTTAGCATCTCTAATACTCCCTC 59.224 44.000 0.00 0.00 39.29 4.30
1847 1983 5.716979 TGGTTAGCATCTCTAATACTCCCT 58.283 41.667 0.00 0.00 39.29 4.20
1848 1984 6.420913 TTGGTTAGCATCTCTAATACTCCC 57.579 41.667 0.00 0.00 39.29 4.30
1849 1985 7.604545 GGATTTGGTTAGCATCTCTAATACTCC 59.395 40.741 0.00 0.00 39.29 3.85
1850 1986 8.371699 AGGATTTGGTTAGCATCTCTAATACTC 58.628 37.037 0.00 0.00 39.29 2.59
1851 1987 8.268878 AGGATTTGGTTAGCATCTCTAATACT 57.731 34.615 0.00 0.00 39.29 2.12
1852 1988 9.425577 GTAGGATTTGGTTAGCATCTCTAATAC 57.574 37.037 0.00 0.00 39.29 1.89
2037 2198 1.807142 CTGCTAGCTCCATCATGCATG 59.193 52.381 21.07 21.07 0.00 4.06
2038 2199 1.420514 ACTGCTAGCTCCATCATGCAT 59.579 47.619 17.23 0.00 0.00 3.96
2039 2200 0.835276 ACTGCTAGCTCCATCATGCA 59.165 50.000 17.23 0.00 0.00 3.96
2041 2202 2.904697 TGACTGCTAGCTCCATCATG 57.095 50.000 17.23 0.00 0.00 3.07
2042 2203 2.550423 GCATGACTGCTAGCTCCATCAT 60.550 50.000 17.23 15.26 45.32 2.45
2043 2204 1.202615 GCATGACTGCTAGCTCCATCA 60.203 52.381 17.23 13.72 45.32 3.07
2044 2205 1.510776 GCATGACTGCTAGCTCCATC 58.489 55.000 17.23 8.52 45.32 3.51
2045 2206 0.249784 CGCATGACTGCTAGCTCCAT 60.250 55.000 17.23 12.89 46.65 3.41
2046 2207 1.142531 CGCATGACTGCTAGCTCCA 59.857 57.895 17.23 11.13 46.65 3.86
2047 2208 0.460987 AACGCATGACTGCTAGCTCC 60.461 55.000 17.23 5.50 46.65 4.70
2052 2218 1.155889 CCACAAACGCATGACTGCTA 58.844 50.000 0.00 0.00 46.65 3.49
2091 2261 0.684153 GCATTTCCTAGCCAAGCCCA 60.684 55.000 0.00 0.00 0.00 5.36
2218 2396 5.068591 GCCTAAAAAGTAGAGAGAGGGAGAG 59.931 48.000 0.00 0.00 0.00 3.20
2219 2397 4.957327 GCCTAAAAAGTAGAGAGAGGGAGA 59.043 45.833 0.00 0.00 0.00 3.71
2220 2398 4.202070 CGCCTAAAAAGTAGAGAGAGGGAG 60.202 50.000 0.00 0.00 0.00 4.30
2221 2399 3.700038 CGCCTAAAAAGTAGAGAGAGGGA 59.300 47.826 0.00 0.00 0.00 4.20
2222 2400 3.738590 GCGCCTAAAAAGTAGAGAGAGGG 60.739 52.174 0.00 0.00 0.00 4.30
2223 2401 3.449632 GCGCCTAAAAAGTAGAGAGAGG 58.550 50.000 0.00 0.00 0.00 3.69
2224 2402 3.119101 TGGCGCCTAAAAAGTAGAGAGAG 60.119 47.826 29.70 0.00 0.00 3.20
2225 2403 2.829720 TGGCGCCTAAAAAGTAGAGAGA 59.170 45.455 29.70 0.00 0.00 3.10
2226 2404 3.247006 TGGCGCCTAAAAAGTAGAGAG 57.753 47.619 29.70 0.00 0.00 3.20
2227 2405 3.259876 TCTTGGCGCCTAAAAAGTAGAGA 59.740 43.478 29.70 7.30 0.00 3.10
2396 2607 1.774254 TGGCGGGACATGGAAGATATT 59.226 47.619 0.00 0.00 0.00 1.28
2446 2657 0.104409 AGTTGGTTGGGTCCTCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
2450 2661 0.467290 TGCAAGTTGGTTGGGTCCTC 60.467 55.000 4.75 0.00 36.56 3.71
2478 2689 8.144478 GCATACCTCTCAATCTCTATGTGTTTA 58.856 37.037 0.00 0.00 0.00 2.01
2480 2691 6.520272 GCATACCTCTCAATCTCTATGTGTT 58.480 40.000 0.00 0.00 0.00 3.32
2481 2692 5.278709 CGCATACCTCTCAATCTCTATGTGT 60.279 44.000 0.00 0.00 0.00 3.72
2482 2693 5.159925 CGCATACCTCTCAATCTCTATGTG 58.840 45.833 0.00 0.00 0.00 3.21
2484 2695 4.172505 GCGCATACCTCTCAATCTCTATG 58.827 47.826 0.30 0.00 0.00 2.23
2486 2697 2.226674 CGCGCATACCTCTCAATCTCTA 59.773 50.000 8.75 0.00 0.00 2.43
2488 2699 1.413382 CGCGCATACCTCTCAATCTC 58.587 55.000 8.75 0.00 0.00 2.75
2492 2703 1.519234 CTGCGCGCATACCTCTCAA 60.519 57.895 36.48 7.33 0.00 3.02
2569 2856 9.740239 TTCTTTTCGCCGTGGATATATATATAC 57.260 33.333 7.90 7.90 0.00 1.47
2573 2860 5.575606 CGTTCTTTTCGCCGTGGATATATAT 59.424 40.000 0.00 0.00 0.00 0.86
2574 2861 4.919168 CGTTCTTTTCGCCGTGGATATATA 59.081 41.667 0.00 0.00 0.00 0.86
2575 2862 3.739300 CGTTCTTTTCGCCGTGGATATAT 59.261 43.478 0.00 0.00 0.00 0.86
2576 2863 3.117794 CGTTCTTTTCGCCGTGGATATA 58.882 45.455 0.00 0.00 0.00 0.86
2577 2864 1.931172 CGTTCTTTTCGCCGTGGATAT 59.069 47.619 0.00 0.00 0.00 1.63
2581 2868 2.248835 ACCGTTCTTTTCGCCGTGG 61.249 57.895 0.00 0.00 0.00 4.94
2609 2896 6.144078 TGATCAATACTACATACAGTGCGT 57.856 37.500 0.00 0.00 0.00 5.24
2618 2905 8.896744 CATTTGACCAACTGATCAATACTACAT 58.103 33.333 0.00 0.00 34.87 2.29
2620 2907 7.066284 AGCATTTGACCAACTGATCAATACTAC 59.934 37.037 0.00 0.00 34.87 2.73
2621 2908 7.112122 AGCATTTGACCAACTGATCAATACTA 58.888 34.615 0.00 0.00 34.87 1.82
2622 2909 5.948162 AGCATTTGACCAACTGATCAATACT 59.052 36.000 0.00 0.00 34.87 2.12
2697 2992 8.477419 TCCTCATATTCATATATACATCGGCA 57.523 34.615 0.00 0.00 0.00 5.69
2759 3057 0.315568 ATGCACGCCTAGCTAGCTAC 59.684 55.000 20.67 11.02 0.00 3.58
2900 3313 2.173433 CATGCATGCCACGTTCTCA 58.827 52.632 14.93 0.00 0.00 3.27
3091 3504 4.864334 GGTGCAGAGGATGGCCGG 62.864 72.222 0.00 0.00 39.96 6.13
3365 3778 1.380302 CCCTCCCAGTTGTCCTTGG 59.620 63.158 0.00 0.00 0.00 3.61
3489 3902 1.643868 CGTACATGGTGCACGCCATT 61.644 55.000 12.98 7.79 46.33 3.16
3516 3929 1.153549 CAGCCCGAAGTAGCACTCC 60.154 63.158 0.00 0.00 0.00 3.85
3534 3947 2.511600 CACATCGGGCGGAGGTTC 60.512 66.667 9.74 0.00 37.63 3.62
3594 4007 1.483424 GCGGCATCAGCTCGAAGTAC 61.483 60.000 0.00 0.00 41.70 2.73
3687 4106 1.517257 CAGCTCGTACTCCTTGCCG 60.517 63.158 0.00 0.00 0.00 5.69
3690 4109 0.888619 TCACCAGCTCGTACTCCTTG 59.111 55.000 0.00 0.00 0.00 3.61
3747 4166 1.448540 GGTCACCTGCAGGATGTCG 60.449 63.158 39.19 19.85 39.31 4.35
3819 4238 1.064946 GTCCGAGTCGATGCTGAGG 59.935 63.158 15.64 0.00 0.00 3.86
4305 4724 2.527951 ATCGAGTCCAACCAGCAGCC 62.528 60.000 0.00 0.00 0.00 4.85
4306 4725 1.078848 ATCGAGTCCAACCAGCAGC 60.079 57.895 0.00 0.00 0.00 5.25
4324 4743 1.391577 TAATCCGTCGACCGATTGGA 58.608 50.000 30.15 21.85 39.56 3.53
4325 4744 2.058798 CATAATCCGTCGACCGATTGG 58.941 52.381 30.15 21.72 39.56 3.16
4326 4745 2.058798 CCATAATCCGTCGACCGATTG 58.941 52.381 30.15 20.31 39.56 2.67
4327 4746 1.604693 GCCATAATCCGTCGACCGATT 60.605 52.381 27.26 27.26 39.56 3.34
4405 4830 1.544246 TCGACTAGTAGCAGCAGCAAA 59.456 47.619 3.17 0.00 45.49 3.68
4406 4831 1.173913 TCGACTAGTAGCAGCAGCAA 58.826 50.000 3.17 0.00 45.49 3.91
4453 6728 2.752903 ACAGGACACAACAAACAGGTTC 59.247 45.455 0.00 0.00 0.00 3.62
4454 6729 2.491693 CACAGGACACAACAAACAGGTT 59.508 45.455 0.00 0.00 0.00 3.50
4552 6836 3.194861 GACACGGCAGATAGTTGCATTA 58.805 45.455 0.00 0.00 45.86 1.90
4553 6837 2.009774 GACACGGCAGATAGTTGCATT 58.990 47.619 0.00 0.00 45.86 3.56
4567 6861 4.253685 ACTCCACATAAGAAATGACACGG 58.746 43.478 0.00 0.00 0.00 4.94
4721 7017 2.149973 TTAGGAACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
4722 7018 7.530426 TTATATTTAGGAACGGAGGGAGTAC 57.470 40.000 0.00 0.00 0.00 2.73
4723 7019 8.731591 AATTATATTTAGGAACGGAGGGAGTA 57.268 34.615 0.00 0.00 0.00 2.59
4724 7020 7.628501 AATTATATTTAGGAACGGAGGGAGT 57.371 36.000 0.00 0.00 0.00 3.85
4725 7021 8.919777 AAAATTATATTTAGGAACGGAGGGAG 57.080 34.615 0.00 0.00 0.00 4.30
4748 7044 7.893658 AGTCCGTAGTGAAATCTCTAGAAAAA 58.106 34.615 0.00 0.00 0.00 1.94
4749 7045 7.463961 AGTCCGTAGTGAAATCTCTAGAAAA 57.536 36.000 0.00 0.00 0.00 2.29
4750 7046 8.749026 ATAGTCCGTAGTGAAATCTCTAGAAA 57.251 34.615 0.00 0.00 0.00 2.52
4755 7051 9.570468 TTGTATATAGTCCGTAGTGAAATCTCT 57.430 33.333 0.00 0.00 0.00 3.10
4758 7054 8.913656 GCTTTGTATATAGTCCGTAGTGAAATC 58.086 37.037 0.00 0.00 0.00 2.17
4759 7055 8.418662 TGCTTTGTATATAGTCCGTAGTGAAAT 58.581 33.333 0.00 0.00 0.00 2.17
4760 7056 7.774134 TGCTTTGTATATAGTCCGTAGTGAAA 58.226 34.615 0.00 0.00 0.00 2.69
4761 7057 7.337480 TGCTTTGTATATAGTCCGTAGTGAA 57.663 36.000 0.00 0.00 0.00 3.18
4762 7058 6.947644 TGCTTTGTATATAGTCCGTAGTGA 57.052 37.500 0.00 0.00 0.00 3.41
4763 7059 7.997107 TTTGCTTTGTATATAGTCCGTAGTG 57.003 36.000 0.00 0.00 0.00 2.74
4764 7060 9.042008 CATTTTGCTTTGTATATAGTCCGTAGT 57.958 33.333 0.00 0.00 0.00 2.73
4765 7061 9.256477 TCATTTTGCTTTGTATATAGTCCGTAG 57.744 33.333 0.00 0.00 0.00 3.51
4766 7062 9.256477 CTCATTTTGCTTTGTATATAGTCCGTA 57.744 33.333 0.00 0.00 0.00 4.02
4767 7063 7.769044 ACTCATTTTGCTTTGTATATAGTCCGT 59.231 33.333 0.00 0.00 0.00 4.69
4768 7064 8.064222 CACTCATTTTGCTTTGTATATAGTCCG 58.936 37.037 0.00 0.00 0.00 4.79
4769 7065 9.109393 TCACTCATTTTGCTTTGTATATAGTCC 57.891 33.333 0.00 0.00 0.00 3.85
4772 7068 9.722056 GGTTCACTCATTTTGCTTTGTATATAG 57.278 33.333 0.00 0.00 0.00 1.31
4773 7069 9.461312 AGGTTCACTCATTTTGCTTTGTATATA 57.539 29.630 0.00 0.00 0.00 0.86
4774 7070 8.246180 CAGGTTCACTCATTTTGCTTTGTATAT 58.754 33.333 0.00 0.00 0.00 0.86
4775 7071 7.309133 CCAGGTTCACTCATTTTGCTTTGTATA 60.309 37.037 0.00 0.00 0.00 1.47
4776 7072 6.449698 CAGGTTCACTCATTTTGCTTTGTAT 58.550 36.000 0.00 0.00 0.00 2.29
4777 7073 5.221224 CCAGGTTCACTCATTTTGCTTTGTA 60.221 40.000 0.00 0.00 0.00 2.41
4778 7074 4.441913 CCAGGTTCACTCATTTTGCTTTGT 60.442 41.667 0.00 0.00 0.00 2.83
4779 7075 4.053295 CCAGGTTCACTCATTTTGCTTTG 58.947 43.478 0.00 0.00 0.00 2.77
4780 7076 3.960102 TCCAGGTTCACTCATTTTGCTTT 59.040 39.130 0.00 0.00 0.00 3.51
4781 7077 3.319122 GTCCAGGTTCACTCATTTTGCTT 59.681 43.478 0.00 0.00 0.00 3.91
4782 7078 2.887152 GTCCAGGTTCACTCATTTTGCT 59.113 45.455 0.00 0.00 0.00 3.91
4783 7079 2.887152 AGTCCAGGTTCACTCATTTTGC 59.113 45.455 0.00 0.00 0.00 3.68
4784 7080 4.392940 AGAGTCCAGGTTCACTCATTTTG 58.607 43.478 9.03 0.00 41.43 2.44
4785 7081 4.713792 AGAGTCCAGGTTCACTCATTTT 57.286 40.909 9.03 0.00 41.43 1.82
4786 7082 5.825593 TTAGAGTCCAGGTTCACTCATTT 57.174 39.130 9.03 0.00 41.43 2.32
4787 7083 5.308237 ACTTTAGAGTCCAGGTTCACTCATT 59.692 40.000 9.03 0.00 41.43 2.57
4788 7084 4.841246 ACTTTAGAGTCCAGGTTCACTCAT 59.159 41.667 9.03 0.00 41.43 2.90
4789 7085 4.223953 ACTTTAGAGTCCAGGTTCACTCA 58.776 43.478 9.03 0.00 41.43 3.41
4790 7086 4.875561 ACTTTAGAGTCCAGGTTCACTC 57.124 45.455 0.00 0.00 39.58 3.51
4791 7087 4.217983 CGTACTTTAGAGTCCAGGTTCACT 59.782 45.833 0.00 0.00 37.33 3.41
4792 7088 4.022503 ACGTACTTTAGAGTCCAGGTTCAC 60.023 45.833 0.00 0.00 37.33 3.18
4793 7089 4.147321 ACGTACTTTAGAGTCCAGGTTCA 58.853 43.478 0.00 0.00 37.33 3.18
4794 7090 4.458642 AGACGTACTTTAGAGTCCAGGTTC 59.541 45.833 0.00 0.00 37.33 3.62
4795 7091 4.405548 AGACGTACTTTAGAGTCCAGGTT 58.594 43.478 0.00 0.00 37.33 3.50
4796 7092 4.031636 AGACGTACTTTAGAGTCCAGGT 57.968 45.455 0.00 0.00 37.33 4.00
4797 7093 7.982761 ATATAGACGTACTTTAGAGTCCAGG 57.017 40.000 0.00 0.00 37.33 4.45
4798 7094 9.486497 TGTATATAGACGTACTTTAGAGTCCAG 57.514 37.037 0.00 0.00 37.33 3.86
4813 7109 9.865484 CGAACTACATATGGATGTATATAGACG 57.135 37.037 7.80 5.54 45.42 4.18
4814 7110 9.666626 GCGAACTACATATGGATGTATATAGAC 57.333 37.037 7.80 0.00 45.42 2.59
4815 7111 9.403583 TGCGAACTACATATGGATGTATATAGA 57.596 33.333 7.80 0.00 45.42 1.98
4820 7116 9.719355 TTTAATGCGAACTACATATGGATGTAT 57.281 29.630 7.80 0.00 45.42 2.29
4821 7117 9.549078 TTTTAATGCGAACTACATATGGATGTA 57.451 29.630 7.80 0.00 44.77 2.29
4823 7119 9.546909 GATTTTAATGCGAACTACATATGGATG 57.453 33.333 7.80 0.00 39.16 3.51
4824 7120 9.507329 AGATTTTAATGCGAACTACATATGGAT 57.493 29.630 7.80 0.00 0.00 3.41
4825 7121 8.902540 AGATTTTAATGCGAACTACATATGGA 57.097 30.769 7.80 0.00 0.00 3.41
4826 7122 8.993121 AGAGATTTTAATGCGAACTACATATGG 58.007 33.333 7.80 0.00 0.00 2.74
4830 7126 9.817809 TTCTAGAGATTTTAATGCGAACTACAT 57.182 29.630 0.00 0.00 0.00 2.29
4831 7127 9.647797 TTTCTAGAGATTTTAATGCGAACTACA 57.352 29.630 0.00 0.00 0.00 2.74
4834 7130 8.874816 GTCTTTCTAGAGATTTTAATGCGAACT 58.125 33.333 0.00 0.00 0.00 3.01
4835 7131 8.874816 AGTCTTTCTAGAGATTTTAATGCGAAC 58.125 33.333 0.00 0.00 0.00 3.95
4836 7132 9.436957 AAGTCTTTCTAGAGATTTTAATGCGAA 57.563 29.630 0.00 0.00 0.00 4.70
4849 7145 9.291664 CGTTCCTAAATGTAAGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
4850 7146 8.248945 CCGTTCCTAAATGTAAGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
4851 7147 8.248945 TCCGTTCCTAAATGTAAGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4852 7148 8.125978 TCCGTTCCTAAATGTAAGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4853 7149 7.001099 TCCGTTCCTAAATGTAAGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4854 7150 6.313164 CCTCCGTTCCTAAATGTAAGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
4855 7151 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4856 7152 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4857 7153 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
4858 7154 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
4859 7155 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4860 7156 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4861 7157 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4862 7158 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4863 7159 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4864 7160 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
4865 7161 6.082707 ACATATACTCCCTCCGTTCCTAAAT 58.917 40.000 0.00 0.00 0.00 1.40
4866 7162 5.461327 ACATATACTCCCTCCGTTCCTAAA 58.539 41.667 0.00 0.00 0.00 1.85
4867 7163 5.070823 ACATATACTCCCTCCGTTCCTAA 57.929 43.478 0.00 0.00 0.00 2.69
4868 7164 4.736611 ACATATACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
4869 7165 3.614568 ACATATACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
4870 7166 4.684484 AAACATATACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
4871 7167 5.915175 AGAAAACATATACTCCCTCCGTTC 58.085 41.667 0.00 0.00 0.00 3.95
4872 7168 5.952347 AGAAAACATATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
4873 7169 5.661759 AGAAGAAAACATATACTCCCTCCGT 59.338 40.000 0.00 0.00 0.00 4.69
4874 7170 6.041069 AGAGAAGAAAACATATACTCCCTCCG 59.959 42.308 0.00 0.00 0.00 4.63
4875 7171 7.289084 AGAGAGAAGAAAACATATACTCCCTCC 59.711 40.741 0.00 0.00 0.00 4.30
4876 7172 8.141268 CAGAGAGAAGAAAACATATACTCCCTC 58.859 40.741 0.00 0.00 0.00 4.30
4877 7173 7.070571 CCAGAGAGAAGAAAACATATACTCCCT 59.929 40.741 0.00 0.00 0.00 4.20
4878 7174 7.147637 ACCAGAGAGAAGAAAACATATACTCCC 60.148 40.741 0.00 0.00 0.00 4.30
4879 7175 7.787028 ACCAGAGAGAAGAAAACATATACTCC 58.213 38.462 0.00 0.00 0.00 3.85
4880 7176 9.308318 GAACCAGAGAGAAGAAAACATATACTC 57.692 37.037 0.00 0.00 0.00 2.59
4881 7177 9.041354 AGAACCAGAGAGAAGAAAACATATACT 57.959 33.333 0.00 0.00 0.00 2.12
4882 7178 9.092876 CAGAACCAGAGAGAAGAAAACATATAC 57.907 37.037 0.00 0.00 0.00 1.47
4883 7179 8.816894 ACAGAACCAGAGAGAAGAAAACATATA 58.183 33.333 0.00 0.00 0.00 0.86
4960 7257 9.220906 AGTAACTGAATATTGTTGAGGGGTATA 57.779 33.333 0.00 0.00 0.00 1.47
5108 7439 8.940397 TCTTTCTTTTAACCAGAGGAATCATT 57.060 30.769 0.00 0.00 0.00 2.57
5118 7449 7.175797 ACCCTATCCTTCTTTCTTTTAACCAG 58.824 38.462 0.00 0.00 0.00 4.00
5132 7463 8.165397 AGTACTAGATTAGTGACCCTATCCTTC 58.835 40.741 0.00 0.00 39.81 3.46
5166 7497 2.810274 GGGCGAGATGTACGTATGTAGA 59.190 50.000 0.00 0.00 0.00 2.59
5175 7506 2.429610 TGAAGTTAGGGGCGAGATGTAC 59.570 50.000 0.00 0.00 0.00 2.90
5176 7507 2.693591 CTGAAGTTAGGGGCGAGATGTA 59.306 50.000 0.00 0.00 0.00 2.29
5177 7508 1.482593 CTGAAGTTAGGGGCGAGATGT 59.517 52.381 0.00 0.00 0.00 3.06
5178 7509 1.757118 TCTGAAGTTAGGGGCGAGATG 59.243 52.381 0.00 0.00 0.00 2.90
5182 7515 0.895530 CTGTCTGAAGTTAGGGGCGA 59.104 55.000 0.00 0.00 0.00 5.54
5186 7519 5.476091 AGAAGTTCTGTCTGAAGTTAGGG 57.524 43.478 4.10 0.00 45.39 3.53
5189 7522 7.506261 AGGAGTTAGAAGTTCTGTCTGAAGTTA 59.494 37.037 15.90 0.00 45.39 2.24
5243 7576 7.927092 AGTAGGTTGAGACAAGTTTAGAGTTTC 59.073 37.037 0.00 0.00 0.00 2.78
5244 7577 7.793036 AGTAGGTTGAGACAAGTTTAGAGTTT 58.207 34.615 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.