Multiple sequence alignment - TraesCS3B01G335200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G335200 chr3B 100.000 5180 0 0 1 5180 541207440 541212619 0.000000e+00 9566.0
1 TraesCS3B01G335200 chr3B 82.948 563 73 10 103 663 489361266 489361807 2.170000e-133 486.0
2 TraesCS3B01G335200 chr3D 94.809 1310 49 6 3088 4396 415167694 415168985 0.000000e+00 2025.0
3 TraesCS3B01G335200 chr3D 95.005 1041 32 15 1897 2926 415166664 415167695 0.000000e+00 1616.0
4 TraesCS3B01G335200 chr3D 94.229 953 42 5 325 1275 415165175 415166116 0.000000e+00 1443.0
5 TraesCS3B01G335200 chr3D 94.095 525 27 3 1278 1802 415166152 415166672 0.000000e+00 795.0
6 TraesCS3B01G335200 chr3D 85.375 800 43 19 4436 5180 415168985 415169765 0.000000e+00 761.0
7 TraesCS3B01G335200 chr3D 88.116 345 35 5 325 669 375210899 375211237 6.250000e-109 405.0
8 TraesCS3B01G335200 chr3A 94.210 1278 47 6 3120 4396 535185077 535183826 0.000000e+00 1925.0
9 TraesCS3B01G335200 chr3A 96.332 1036 30 8 1897 2926 535188756 535187723 0.000000e+00 1696.0
10 TraesCS3B01G335200 chr3A 95.178 954 39 4 325 1274 535190272 535189322 0.000000e+00 1500.0
11 TraesCS3B01G335200 chr3A 93.377 755 26 4 3642 4396 535178078 535177348 0.000000e+00 1096.0
12 TraesCS3B01G335200 chr3A 95.376 519 19 4 1288 1802 535189265 535188748 0.000000e+00 821.0
13 TraesCS3B01G335200 chr3A 88.427 337 33 5 327 663 498246731 498247061 8.080000e-108 401.0
14 TraesCS3B01G335200 chr3A 91.701 241 11 4 72 304 535190500 535190261 5.000000e-85 326.0
15 TraesCS3B01G335200 chr3A 84.466 309 26 17 4568 4873 535177288 535176999 8.490000e-73 285.0
16 TraesCS3B01G335200 chr3A 84.466 309 26 17 4568 4873 535183766 535183477 8.490000e-73 285.0
17 TraesCS3B01G335200 chr3A 96.842 95 3 0 1802 1896 383709308 383709402 5.370000e-35 159.0
18 TraesCS3B01G335200 chr3A 85.366 123 13 4 529 648 703649341 703649221 7.040000e-24 122.0
19 TraesCS3B01G335200 chr2A 82.440 541 71 12 126 665 706750855 706751372 7.910000e-123 451.0
20 TraesCS3B01G335200 chr2A 97.110 173 5 0 2925 3097 746756990 746757162 5.070000e-75 292.0
21 TraesCS3B01G335200 chr2A 94.286 105 4 2 1802 1904 568309906 568309802 5.370000e-35 159.0
22 TraesCS3B01G335200 chr7D 86.804 341 37 6 325 665 175919085 175919417 1.760000e-99 374.0
23 TraesCS3B01G335200 chr7B 86.804 341 36 7 325 665 141798674 141799005 6.330000e-99 372.0
24 TraesCS3B01G335200 chr7B 94.286 105 5 1 1802 1905 678625796 678625900 5.370000e-35 159.0
25 TraesCS3B01G335200 chr5A 83.430 344 48 6 325 665 577963918 577963581 1.400000e-80 311.0
26 TraesCS3B01G335200 chr4A 97.688 173 4 0 2925 3097 362067911 362068083 1.090000e-76 298.0
27 TraesCS3B01G335200 chr4A 100.000 97 0 0 1802 1898 306318935 306319031 4.120000e-41 180.0
28 TraesCS3B01G335200 chr1D 97.688 173 3 1 2917 3089 238940387 238940216 3.920000e-76 296.0
29 TraesCS3B01G335200 chr1D 86.932 176 21 2 130 304 317427055 317427229 4.090000e-46 196.0
30 TraesCS3B01G335200 chr5D 98.225 169 2 1 2921 3089 92111716 92111549 1.410000e-75 294.0
31 TraesCS3B01G335200 chr5D 87.500 192 22 2 113 303 458926478 458926288 2.430000e-53 220.0
32 TraesCS3B01G335200 chr2D 96.111 180 5 2 2920 3097 135284809 135284988 5.070000e-75 292.0
33 TraesCS3B01G335200 chr7A 97.110 173 4 1 2921 3093 324925199 324925028 1.820000e-74 291.0
34 TraesCS3B01G335200 chr4D 97.110 173 4 1 2917 3089 93338035 93338206 1.820000e-74 291.0
35 TraesCS3B01G335200 chr6A 96.571 175 5 1 2917 3090 24071887 24072061 6.560000e-74 289.0
36 TraesCS3B01G335200 chr1A 92.040 201 11 5 2922 3120 84438309 84438506 1.420000e-70 278.0
37 TraesCS3B01G335200 chr1A 97.938 97 2 0 1802 1898 543930623 543930719 8.920000e-38 169.0
38 TraesCS3B01G335200 chr4B 86.916 214 21 5 96 304 513100984 513100773 3.120000e-57 233.0
39 TraesCS3B01G335200 chr4B 97.938 97 0 1 1802 1898 347377749 347377843 3.210000e-37 167.0
40 TraesCS3B01G335200 chr4B 97.872 94 2 0 1802 1895 329808498 329808591 4.150000e-36 163.0
41 TraesCS3B01G335200 chr1B 86.275 204 25 3 103 304 429583695 429583897 8.730000e-53 219.0
42 TraesCS3B01G335200 chr6B 98.969 97 1 0 1802 1898 463375232 463375136 1.920000e-39 174.0
43 TraesCS3B01G335200 chr6B 100.000 29 0 0 637 665 643844156 643844128 3.000000e-03 54.7
44 TraesCS3B01G335200 chr2B 94.286 105 5 1 1802 1905 168837758 168837654 5.370000e-35 159.0
45 TraesCS3B01G335200 chr2B 96.970 33 1 0 633 665 437091749 437091717 7.250000e-04 56.5
46 TraesCS3B01G335200 chr5B 84.615 117 16 2 186 302 157594598 157594712 1.180000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G335200 chr3B 541207440 541212619 5179 False 9566.000000 9566 100.000000 1 5180 1 chr3B.!!$F2 5179
1 TraesCS3B01G335200 chr3B 489361266 489361807 541 False 486.000000 486 82.948000 103 663 1 chr3B.!!$F1 560
2 TraesCS3B01G335200 chr3D 415165175 415169765 4590 False 1328.000000 2025 92.702600 325 5180 5 chr3D.!!$F2 4855
3 TraesCS3B01G335200 chr3A 535183477 535190500 7023 True 1092.166667 1925 92.877167 72 4873 6 chr3A.!!$R3 4801
4 TraesCS3B01G335200 chr3A 535176999 535178078 1079 True 690.500000 1096 88.921500 3642 4873 2 chr3A.!!$R2 1231
5 TraesCS3B01G335200 chr2A 706750855 706751372 517 False 451.000000 451 82.440000 126 665 1 chr2A.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.029567 GTCATCGCTAGACGTCCAGG 59.970 60.000 13.01 3.75 44.19 4.45 F
55 56 0.107361 TCATCGCTAGACGTCCAGGA 60.107 55.000 13.01 8.19 44.19 3.86 F
793 824 0.179150 CTCAGGTCGCAGTCTGCTAC 60.179 60.000 22.13 20.34 42.25 3.58 F
863 894 1.001764 TCGCCTCGTCCCTTCAGTA 60.002 57.895 0.00 0.00 0.00 2.74 F
1086 1117 1.590259 GCTTCTCGGGCTCGATGTC 60.590 63.158 10.26 0.00 45.04 3.06 F
1838 1917 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95 F
1839 1918 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34 F
2987 3078 0.973632 AAGTGACCACATACGGAGCA 59.026 50.000 2.78 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 1117 0.028110 GCCCGACGTACTTACTACCG 59.972 60.0 0.00 0.00 0.00 4.02 R
1801 1880 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.0 4.27 0.00 36.69 2.94 R
1819 1898 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.0 0.00 0.00 39.25 3.97 R
1820 1899 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.0 0.00 0.00 39.25 3.46 R
2968 3059 0.973632 TGCTCCGTATGTGGTCACTT 59.026 50.0 2.66 0.00 0.00 3.16 R
3242 5950 0.109873 GCTGTGCTGCACTGTGATTC 60.110 55.0 31.15 16.48 36.06 2.52 R
3449 6159 0.808755 GATAACCCACAACAAGCCCG 59.191 55.0 0.00 0.00 0.00 6.13 R
4436 7146 0.242825 CTCACGCCTCGACCAACTAA 59.757 55.0 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.702081 GCCGTCAGACGTCGCTGT 62.702 66.667 21.34 0.00 40.58 4.40
28 29 2.801162 CCGTCAGACGTCGCTGTG 60.801 66.667 21.34 2.80 40.58 3.66
29 30 2.051256 CGTCAGACGTCGCTGTGT 60.051 61.111 15.21 0.00 36.74 3.72
30 31 2.357543 CGTCAGACGTCGCTGTGTG 61.358 63.158 15.21 1.59 36.74 3.82
31 32 2.354656 TCAGACGTCGCTGTGTGC 60.355 61.111 10.46 0.00 37.20 4.57
32 33 3.406361 CAGACGTCGCTGTGTGCC 61.406 66.667 10.46 0.00 38.78 5.01
33 34 3.606662 AGACGTCGCTGTGTGCCT 61.607 61.111 10.46 0.00 38.78 4.75
34 35 3.106407 GACGTCGCTGTGTGCCTC 61.106 66.667 0.00 0.00 38.78 4.70
37 38 3.106407 GTCGCTGTGTGCCTCGTC 61.106 66.667 0.00 0.00 38.78 4.20
38 39 3.601685 TCGCTGTGTGCCTCGTCA 61.602 61.111 0.00 0.00 38.78 4.35
39 40 2.433145 CGCTGTGTGCCTCGTCAT 60.433 61.111 0.00 0.00 38.78 3.06
40 41 2.447887 CGCTGTGTGCCTCGTCATC 61.448 63.158 0.00 0.00 38.78 2.92
41 42 2.447887 GCTGTGTGCCTCGTCATCG 61.448 63.158 0.00 0.00 35.15 3.84
42 43 2.432456 TGTGTGCCTCGTCATCGC 60.432 61.111 0.00 0.00 36.96 4.58
43 44 2.125912 GTGTGCCTCGTCATCGCT 60.126 61.111 0.00 0.00 36.96 4.93
44 45 1.138883 GTGTGCCTCGTCATCGCTA 59.861 57.895 0.00 0.00 36.96 4.26
45 46 0.867753 GTGTGCCTCGTCATCGCTAG 60.868 60.000 0.00 0.00 36.96 3.42
46 47 1.029947 TGTGCCTCGTCATCGCTAGA 61.030 55.000 0.00 0.00 36.96 2.43
47 48 0.592754 GTGCCTCGTCATCGCTAGAC 60.593 60.000 0.00 0.00 36.96 2.59
53 54 3.535691 GTCATCGCTAGACGTCCAG 57.464 57.895 13.01 9.65 44.19 3.86
54 55 0.029567 GTCATCGCTAGACGTCCAGG 59.970 60.000 13.01 3.75 44.19 4.45
55 56 0.107361 TCATCGCTAGACGTCCAGGA 60.107 55.000 13.01 8.19 44.19 3.86
56 57 0.309302 CATCGCTAGACGTCCAGGAG 59.691 60.000 13.01 5.99 44.19 3.69
57 58 1.448922 ATCGCTAGACGTCCAGGAGC 61.449 60.000 13.01 14.64 44.19 4.70
58 59 2.809010 GCTAGACGTCCAGGAGCC 59.191 66.667 13.01 0.00 0.00 4.70
59 60 3.111939 CTAGACGTCCAGGAGCCG 58.888 66.667 13.01 0.00 0.00 5.52
60 61 3.127352 CTAGACGTCCAGGAGCCGC 62.127 68.421 13.01 0.00 0.00 6.53
95 96 2.906897 CCTGCAAGCAACCACCGT 60.907 61.111 0.00 0.00 0.00 4.83
143 152 0.967380 AAGCCTTGAGCCCGATTTGG 60.967 55.000 0.00 0.00 45.47 3.28
214 224 2.566833 TCAGGCTTTGCTCTTTGCTA 57.433 45.000 0.00 0.00 43.37 3.49
228 238 6.141462 GCTCTTTGCTATCTATTGCATCAAC 58.859 40.000 0.05 0.00 38.26 3.18
243 253 2.103153 TCAACCAGGTGGAAGAGTCT 57.897 50.000 2.10 0.00 38.94 3.24
267 277 6.648725 AAGTCTATTGCGTTAGCTAAACAG 57.351 37.500 7.99 4.22 45.42 3.16
292 302 4.441495 CGGACTTGCTATCCAGTACATGAA 60.441 45.833 0.00 0.00 35.83 2.57
293 303 4.811557 GGACTTGCTATCCAGTACATGAAC 59.188 45.833 0.00 0.00 36.15 3.18
294 304 5.419542 GACTTGCTATCCAGTACATGAACA 58.580 41.667 0.00 0.00 0.00 3.18
295 305 5.178797 ACTTGCTATCCAGTACATGAACAC 58.821 41.667 0.00 0.00 0.00 3.32
296 306 4.817318 TGCTATCCAGTACATGAACACA 57.183 40.909 0.00 0.00 0.00 3.72
297 307 4.503910 TGCTATCCAGTACATGAACACAC 58.496 43.478 0.00 0.00 0.00 3.82
298 308 4.020662 TGCTATCCAGTACATGAACACACA 60.021 41.667 0.00 0.00 0.00 3.72
299 309 4.568359 GCTATCCAGTACATGAACACACAG 59.432 45.833 0.00 0.00 0.00 3.66
300 310 4.623932 ATCCAGTACATGAACACACAGT 57.376 40.909 0.00 0.00 0.00 3.55
301 311 3.990092 TCCAGTACATGAACACACAGTC 58.010 45.455 0.00 0.00 0.00 3.51
302 312 3.067106 CCAGTACATGAACACACAGTCC 58.933 50.000 0.00 0.00 0.00 3.85
303 313 3.244215 CCAGTACATGAACACACAGTCCT 60.244 47.826 0.00 0.00 0.00 3.85
304 314 4.380531 CAGTACATGAACACACAGTCCTT 58.619 43.478 0.00 0.00 0.00 3.36
305 315 4.816385 CAGTACATGAACACACAGTCCTTT 59.184 41.667 0.00 0.00 0.00 3.11
306 316 5.296780 CAGTACATGAACACACAGTCCTTTT 59.703 40.000 0.00 0.00 0.00 2.27
307 317 6.481976 CAGTACATGAACACACAGTCCTTTTA 59.518 38.462 0.00 0.00 0.00 1.52
308 318 7.173218 CAGTACATGAACACACAGTCCTTTTAT 59.827 37.037 0.00 0.00 0.00 1.40
309 319 6.959639 ACATGAACACACAGTCCTTTTATT 57.040 33.333 0.00 0.00 0.00 1.40
310 320 7.346751 ACATGAACACACAGTCCTTTTATTT 57.653 32.000 0.00 0.00 0.00 1.40
311 321 7.425606 ACATGAACACACAGTCCTTTTATTTC 58.574 34.615 0.00 0.00 0.00 2.17
312 322 7.068103 ACATGAACACACAGTCCTTTTATTTCA 59.932 33.333 0.00 0.00 0.00 2.69
313 323 7.397892 TGAACACACAGTCCTTTTATTTCAA 57.602 32.000 0.00 0.00 0.00 2.69
314 324 7.831753 TGAACACACAGTCCTTTTATTTCAAA 58.168 30.769 0.00 0.00 0.00 2.69
315 325 8.474025 TGAACACACAGTCCTTTTATTTCAAAT 58.526 29.630 0.00 0.00 0.00 2.32
316 326 9.313118 GAACACACAGTCCTTTTATTTCAAATT 57.687 29.630 0.00 0.00 0.00 1.82
372 398 8.893727 ACACATTATTTTGCTATCCAGTACTTC 58.106 33.333 0.00 0.00 0.00 3.01
436 462 4.304110 TGCCACTCTTAACAAGTTACTCG 58.696 43.478 0.00 0.00 0.00 4.18
438 464 4.621886 GCCACTCTTAACAAGTTACTCGAG 59.378 45.833 11.84 11.84 0.00 4.04
473 500 6.638873 TCTTAACAAATTAACAATGCCACACG 59.361 34.615 0.00 0.00 0.00 4.49
724 755 2.123425 CCTAGCCCTAGGTCGCCA 60.123 66.667 8.29 0.00 45.93 5.69
726 757 1.152735 CTAGCCCTAGGTCGCCAGA 60.153 63.158 8.29 0.00 0.00 3.86
793 824 0.179150 CTCAGGTCGCAGTCTGCTAC 60.179 60.000 22.13 20.34 42.25 3.58
804 835 1.454111 TCTGCTACCCGCTCTCTCC 60.454 63.158 0.00 0.00 40.11 3.71
863 894 1.001764 TCGCCTCGTCCCTTCAGTA 60.002 57.895 0.00 0.00 0.00 2.74
895 926 7.584123 CAGTGATATTTAGCAAATGAACTACGC 59.416 37.037 4.89 0.00 32.38 4.42
935 966 8.584157 TGATTGAAGGTTTGTGTTATATGCTTT 58.416 29.630 0.00 0.00 0.00 3.51
960 991 6.488344 TCTTGCAATACCACATTTGTCTTACA 59.512 34.615 0.00 0.00 0.00 2.41
968 999 7.440523 ACCACATTTGTCTTACATCTTTCTC 57.559 36.000 0.00 0.00 0.00 2.87
1086 1117 1.590259 GCTTCTCGGGCTCGATGTC 60.590 63.158 10.26 0.00 45.04 3.06
1224 1255 4.937620 AGTGGTCATGTATGCTTGTAAGTG 59.062 41.667 0.00 0.00 0.00 3.16
1240 1271 4.826733 TGTAAGTGATGCACAAGAATGGTT 59.173 37.500 0.00 0.00 36.74 3.67
1241 1272 6.000840 TGTAAGTGATGCACAAGAATGGTTA 58.999 36.000 0.00 0.00 36.74 2.85
1375 1448 7.995289 AGTAATTCATTGAATTTGTATGCGGA 58.005 30.769 25.24 5.81 41.64 5.54
1379 1452 5.639757 TCATTGAATTTGTATGCGGACTTG 58.360 37.500 0.00 0.00 0.00 3.16
1409 1482 5.187772 TGCATGATTGTGTTAGGACTAGAGT 59.812 40.000 0.00 0.00 0.00 3.24
1411 1484 5.661056 TGATTGTGTTAGGACTAGAGTGG 57.339 43.478 0.00 0.00 0.00 4.00
1532 1605 8.862325 ATCCTGTGACACACATTTCTATTTTA 57.138 30.769 3.56 0.00 43.71 1.52
1533 1606 8.862325 TCCTGTGACACACATTTCTATTTTAT 57.138 30.769 3.56 0.00 43.71 1.40
1589 1662 6.260700 TCATATTTATGTGCCCTGTAAGGT 57.739 37.500 0.00 0.00 42.88 3.50
1667 1742 5.756918 AGAGTGGCTTGACTCAGTATAGTA 58.243 41.667 11.84 0.00 44.25 1.82
1732 1807 6.608405 TGGGATGTCATCTTAATTCTGCAATT 59.392 34.615 12.54 0.00 36.18 2.32
1774 1849 7.174426 TGTCGTGAGTACTTTTATCTTGAGAGA 59.826 37.037 0.00 0.00 36.09 3.10
1775 1850 8.021973 GTCGTGAGTACTTTTATCTTGAGAGAA 58.978 37.037 0.00 0.00 35.07 2.87
1804 1883 8.814038 AAATTATGATAGCCCATTAGCTTAGG 57.186 34.615 0.00 0.00 41.41 2.69
1805 1884 7.755666 ATTATGATAGCCCATTAGCTTAGGA 57.244 36.000 0.00 0.00 41.41 2.94
1806 1885 7.755666 TTATGATAGCCCATTAGCTTAGGAT 57.244 36.000 0.00 0.00 41.41 3.24
1807 1886 5.426689 TGATAGCCCATTAGCTTAGGATG 57.573 43.478 0.00 0.00 41.41 3.51
1808 1887 4.225942 TGATAGCCCATTAGCTTAGGATGG 59.774 45.833 0.00 1.09 41.41 3.51
1813 1892 3.744660 CCATTAGCTTAGGATGGGTGAC 58.255 50.000 0.00 0.00 37.31 3.67
1825 1904 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
1826 1905 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
1827 1906 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
1828 1907 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
1829 1908 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
1830 1909 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
1831 1910 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
1832 1911 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
1833 1912 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
1834 1913 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
1835 1914 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
1836 1915 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
1837 1916 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
1838 1917 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
1839 1918 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
1840 1919 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
1841 1920 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
1842 1921 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
1843 1922 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
1853 1932 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
1855 1934 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
1856 1935 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
1857 1936 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
1858 1937 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
1859 1938 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
1860 1939 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
1861 1940 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
1862 1941 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
1863 1942 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
1864 1943 5.224441 TCATATCTAGCCTACCCCAACTTT 58.776 41.667 0.00 0.00 0.00 2.66
1865 1944 5.670361 TCATATCTAGCCTACCCCAACTTTT 59.330 40.000 0.00 0.00 0.00 2.27
1866 1945 4.948062 ATCTAGCCTACCCCAACTTTTT 57.052 40.909 0.00 0.00 0.00 1.94
1886 1965 6.651975 TTTTTGGGATTAAAGGCTTCGTAA 57.348 33.333 0.00 0.00 0.00 3.18
1887 1966 5.890424 TTTGGGATTAAAGGCTTCGTAAG 57.110 39.130 0.00 0.00 0.00 2.34
2048 2127 7.092716 AGACAAACATTAATTTGATGGCAGAC 58.907 34.615 8.23 0.00 41.28 3.51
2252 2332 8.729805 TTTTGCTTCAACTTAATGTGGAAAAT 57.270 26.923 0.00 0.00 38.08 1.82
2369 2451 9.110502 CCTTTCTAAGATATTTAAGGGTGACAC 57.889 37.037 0.00 0.00 0.00 3.67
2416 2498 6.543465 TCAAAACAGCATCATATGTAGGAAGG 59.457 38.462 1.90 0.00 0.00 3.46
2417 2499 4.630644 ACAGCATCATATGTAGGAAGGG 57.369 45.455 1.90 0.00 0.00 3.95
2419 2501 5.155161 ACAGCATCATATGTAGGAAGGGTA 58.845 41.667 1.90 0.00 0.00 3.69
2420 2502 5.787494 ACAGCATCATATGTAGGAAGGGTAT 59.213 40.000 1.90 0.00 0.00 2.73
2499 2588 6.194235 TCTGTGGATGGGCAAATAACTATTT 58.806 36.000 0.00 0.00 36.39 1.40
2528 2617 7.909641 CCCACTTTGCAAAATTCAACTAAAAAG 59.090 33.333 13.84 0.00 0.00 2.27
2590 2680 1.688884 TCATGGCCTCGTGGATGGA 60.689 57.895 7.92 0.00 34.57 3.41
2628 2718 7.944729 AACTTAGATTTGTGCATAGAATGGT 57.055 32.000 0.00 0.00 0.00 3.55
2882 2973 3.740832 GCCTTTTCAATACTGCACCAAAC 59.259 43.478 0.00 0.00 0.00 2.93
2884 2975 4.984161 CCTTTTCAATACTGCACCAAACAG 59.016 41.667 0.00 0.00 41.08 3.16
2903 2994 6.966435 AACAGTTTTGCCAATAATATGCAC 57.034 33.333 0.00 0.00 34.16 4.57
2925 3016 7.065204 TGCACGAGAACTGCATGTAATTTATTA 59.935 33.333 0.00 0.00 39.76 0.98
2926 3017 7.373441 GCACGAGAACTGCATGTAATTTATTAC 59.627 37.037 5.82 5.82 37.82 1.89
2927 3018 8.604035 CACGAGAACTGCATGTAATTTATTACT 58.396 33.333 12.42 0.00 42.32 2.24
2928 3019 8.818057 ACGAGAACTGCATGTAATTTATTACTC 58.182 33.333 12.42 0.00 42.32 2.59
2929 3020 8.276325 CGAGAACTGCATGTAATTTATTACTCC 58.724 37.037 12.42 3.70 42.32 3.85
2930 3021 8.451908 AGAACTGCATGTAATTTATTACTCCC 57.548 34.615 12.42 3.43 42.32 4.30
2931 3022 8.275040 AGAACTGCATGTAATTTATTACTCCCT 58.725 33.333 12.42 0.00 42.32 4.20
2932 3023 8.451908 AACTGCATGTAATTTATTACTCCCTC 57.548 34.615 12.42 1.40 42.32 4.30
2933 3024 6.998673 ACTGCATGTAATTTATTACTCCCTCC 59.001 38.462 12.42 0.00 42.32 4.30
2934 3025 5.995282 TGCATGTAATTTATTACTCCCTCCG 59.005 40.000 12.42 0.00 42.32 4.63
2935 3026 5.995897 GCATGTAATTTATTACTCCCTCCGT 59.004 40.000 12.42 0.00 42.32 4.69
2936 3027 6.485648 GCATGTAATTTATTACTCCCTCCGTT 59.514 38.462 12.42 0.00 42.32 4.44
2937 3028 7.307811 GCATGTAATTTATTACTCCCTCCGTTC 60.308 40.741 12.42 0.00 42.32 3.95
2938 3029 6.585416 TGTAATTTATTACTCCCTCCGTTCC 58.415 40.000 12.42 0.00 42.32 3.62
2939 3030 5.970501 AATTTATTACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
2940 3031 7.564660 TGTAATTTATTACTCCCTCCGTTCCTA 59.435 37.037 12.42 0.00 42.32 2.94
2941 3032 7.441903 AATTTATTACTCCCTCCGTTCCTAA 57.558 36.000 0.00 0.00 0.00 2.69
2942 3033 6.872585 TTTATTACTCCCTCCGTTCCTAAA 57.127 37.500 0.00 0.00 0.00 1.85
2943 3034 7.441903 TTTATTACTCCCTCCGTTCCTAAAT 57.558 36.000 0.00 0.00 0.00 1.40
2944 3035 8.551682 TTTATTACTCCCTCCGTTCCTAAATA 57.448 34.615 0.00 0.00 0.00 1.40
2945 3036 8.731591 TTATTACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
2946 3037 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2947 3038 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2948 3039 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2949 3040 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2950 3041 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2951 3042 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2952 3043 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2953 3044 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2954 3045 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2955 3046 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2956 3047 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2957 3048 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2958 3049 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2971 3062 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2972 3063 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2973 3064 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2974 3065 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2975 3066 7.657761 TCTTTCTAGAGATTTCAACAAGTGACC 59.342 37.037 0.00 0.00 35.39 4.02
2976 3067 6.419484 TCTAGAGATTTCAACAAGTGACCA 57.581 37.500 0.00 0.00 35.39 4.02
2977 3068 6.223852 TCTAGAGATTTCAACAAGTGACCAC 58.776 40.000 0.00 0.00 35.39 4.16
2978 3069 4.780815 AGAGATTTCAACAAGTGACCACA 58.219 39.130 2.78 0.00 35.39 4.17
2979 3070 5.380043 AGAGATTTCAACAAGTGACCACAT 58.620 37.500 2.78 0.00 35.39 3.21
2980 3071 6.533730 AGAGATTTCAACAAGTGACCACATA 58.466 36.000 2.78 0.00 35.39 2.29
2981 3072 6.428159 AGAGATTTCAACAAGTGACCACATAC 59.572 38.462 2.78 0.00 35.39 2.39
2982 3073 4.804608 TTTCAACAAGTGACCACATACG 57.195 40.909 2.78 0.00 35.39 3.06
2983 3074 2.761559 TCAACAAGTGACCACATACGG 58.238 47.619 2.78 0.00 0.00 4.02
2984 3075 2.365941 TCAACAAGTGACCACATACGGA 59.634 45.455 2.78 0.00 0.00 4.69
2985 3076 2.736721 CAACAAGTGACCACATACGGAG 59.263 50.000 2.78 0.00 0.00 4.63
2986 3077 1.337823 ACAAGTGACCACATACGGAGC 60.338 52.381 2.78 0.00 0.00 4.70
2987 3078 0.973632 AAGTGACCACATACGGAGCA 59.026 50.000 2.78 0.00 0.00 4.26
2988 3079 0.973632 AGTGACCACATACGGAGCAA 59.026 50.000 2.78 0.00 0.00 3.91
2989 3080 1.346395 AGTGACCACATACGGAGCAAA 59.654 47.619 2.78 0.00 0.00 3.68
2990 3081 2.147958 GTGACCACATACGGAGCAAAA 58.852 47.619 0.00 0.00 0.00 2.44
2991 3082 2.747446 GTGACCACATACGGAGCAAAAT 59.253 45.455 0.00 0.00 0.00 1.82
2992 3083 2.746904 TGACCACATACGGAGCAAAATG 59.253 45.455 0.00 0.00 0.00 2.32
2993 3084 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
2994 3085 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
2995 3086 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
2996 3087 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
2997 3088 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
2998 3089 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
2999 3090 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3000 3091 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3001 3092 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3002 3093 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3003 3094 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3004 3095 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3005 3096 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3043 3134 9.682465 TCTATATACATCTGTATGTGGTAGTCC 57.318 37.037 12.10 0.00 45.99 3.85
3044 3135 9.462606 CTATATACATCTGTATGTGGTAGTCCA 57.537 37.037 12.10 0.00 45.99 4.02
3045 3136 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
3046 3137 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
3047 3138 6.313519 ACATCTGTATGTGGTAGTCCATTT 57.686 37.500 0.00 0.00 44.79 2.32
3048 3139 6.115446 ACATCTGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
3049 3140 6.070251 ACATCTGTATGTGGTAGTCCATTTGA 60.070 38.462 0.00 0.00 44.79 2.69
3050 3141 6.367374 TCTGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
3051 3142 6.774673 TCTGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
3052 3143 7.402054 TCTGTATGTGGTAGTCCATTTGAAAT 58.598 34.615 0.00 0.00 46.20 2.17
3053 3144 7.552687 TCTGTATGTGGTAGTCCATTTGAAATC 59.447 37.037 0.00 0.00 46.20 2.17
3054 3145 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
3055 3146 7.552687 TGTATGTGGTAGTCCATTTGAAATCTC 59.447 37.037 0.00 0.00 46.20 2.75
3056 3147 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3057 3148 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3058 3149 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
3059 3150 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
3060 3151 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
3061 3152 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
3062 3153 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
3063 3154 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
3064 3155 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
3065 3156 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
3066 3157 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
3067 3158 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
3080 3171 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3081 3172 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3082 3173 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3083 3174 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3084 3175 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3085 3176 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3086 3177 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3087 3178 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3097 3188 1.275573 ACGGAGGGAGTAAGAAGCAAC 59.724 52.381 0.00 0.00 0.00 4.17
3124 3215 5.473162 TGCACCACATTATGCATAGATAACC 59.527 40.000 6.50 0.00 46.63 2.85
3170 5876 2.226674 GTGGCCTTTCAAGTGTAGCTTC 59.773 50.000 3.32 0.00 34.69 3.86
3174 5880 2.158449 CCTTTCAAGTGTAGCTTCGCTG 59.842 50.000 7.22 2.66 40.10 5.18
3184 5890 4.392138 GTGTAGCTTCGCTGTTATCCTTTT 59.608 41.667 0.00 0.00 40.10 2.27
3185 5891 5.001232 TGTAGCTTCGCTGTTATCCTTTTT 58.999 37.500 0.00 0.00 40.10 1.94
3254 5962 7.264947 TCTTATAGATTTCGAATCACAGTGCA 58.735 34.615 0.00 0.00 0.00 4.57
3299 6007 7.493320 TGGTAGTAGTGTTTGACAAGTTTACAG 59.507 37.037 0.00 0.00 0.00 2.74
3393 6102 9.860898 ACCTCTCTTTAATTTTCAATTATGCAC 57.139 29.630 0.00 0.00 0.00 4.57
3449 6159 4.404640 AGGTTAAAAACTACTCCCTTGCC 58.595 43.478 0.00 0.00 0.00 4.52
3505 6215 4.162320 GGGTCAATCTTCTCCAGATGTACA 59.838 45.833 0.00 0.00 41.93 2.90
3530 6240 6.069615 AGTGCCCTTTTGGTAGTATAGTTCAT 60.070 38.462 0.00 0.00 38.10 2.57
3716 6426 7.284034 CCTCTGTGTGCCTTCTTATTCAAATAT 59.716 37.037 0.00 0.00 0.00 1.28
3767 6477 4.345547 TGGCCATCGGATACATTGTAGTTA 59.654 41.667 0.00 0.00 0.00 2.24
3831 6541 9.554395 TGTCATGTCTCTTTTACAAGTATTTGA 57.446 29.630 4.81 0.00 37.73 2.69
3938 6648 6.368791 TGAAACTAAATGATCCAGTTGAGACG 59.631 38.462 0.00 0.00 32.96 4.18
4023 6733 5.699915 GGATGACATCATACTCCAATCACTG 59.300 44.000 17.08 0.00 36.57 3.66
4042 6752 3.384467 ACTGGGTTCATGTTTTCAGTTGG 59.616 43.478 0.00 0.00 32.34 3.77
4078 6788 3.010200 AGATCTTTGGGCCATTCAGTC 57.990 47.619 7.26 2.56 0.00 3.51
4156 6866 2.440409 ACATGAACAGGGCATTGAGAC 58.560 47.619 0.00 0.00 0.00 3.36
4157 6867 2.224843 ACATGAACAGGGCATTGAGACA 60.225 45.455 0.00 0.00 0.00 3.41
4247 6957 6.868339 CCTCTTTGTTTGTTTCTTTCTTGTGT 59.132 34.615 0.00 0.00 0.00 3.72
4261 6971 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
4262 6972 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4263 6973 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4264 6974 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4265 6975 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
4266 6976 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
4267 6977 1.669437 TGTGTGTGTGTGTGTGCGT 60.669 52.632 0.00 0.00 0.00 5.24
4268 6978 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
4317 7027 7.879160 ACAATTTGCATAGGTCAATGAACATTT 59.121 29.630 0.00 0.00 0.00 2.32
4318 7028 9.368674 CAATTTGCATAGGTCAATGAACATTTA 57.631 29.630 0.00 0.00 0.00 1.40
4392 7102 4.514781 AAAGCATTTCCTTTTCCCGTAC 57.485 40.909 0.00 0.00 27.08 3.67
4396 7106 3.428862 GCATTTCCTTTTCCCGTACCATG 60.429 47.826 0.00 0.00 0.00 3.66
4397 7107 3.791953 TTTCCTTTTCCCGTACCATGA 57.208 42.857 0.00 0.00 0.00 3.07
4398 7108 3.791953 TTCCTTTTCCCGTACCATGAA 57.208 42.857 0.00 0.00 0.00 2.57
4399 7109 3.343941 TCCTTTTCCCGTACCATGAAG 57.656 47.619 0.00 0.00 0.00 3.02
4400 7110 1.743394 CCTTTTCCCGTACCATGAAGC 59.257 52.381 0.00 0.00 0.00 3.86
4401 7111 2.432444 CTTTTCCCGTACCATGAAGCA 58.568 47.619 0.00 0.00 0.00 3.91
4402 7112 2.799126 TTTCCCGTACCATGAAGCAT 57.201 45.000 0.00 0.00 0.00 3.79
4403 7113 3.916359 TTTCCCGTACCATGAAGCATA 57.084 42.857 0.00 0.00 0.00 3.14
4404 7114 4.431416 TTTCCCGTACCATGAAGCATAT 57.569 40.909 0.00 0.00 0.00 1.78
4405 7115 4.431416 TTCCCGTACCATGAAGCATATT 57.569 40.909 0.00 0.00 0.00 1.28
4406 7116 4.431416 TCCCGTACCATGAAGCATATTT 57.569 40.909 0.00 0.00 0.00 1.40
4407 7117 4.385825 TCCCGTACCATGAAGCATATTTC 58.614 43.478 0.00 0.00 0.00 2.17
4408 7118 4.133820 CCCGTACCATGAAGCATATTTCA 58.866 43.478 0.00 0.00 41.00 2.69
4409 7119 4.761739 CCCGTACCATGAAGCATATTTCAT 59.238 41.667 0.00 0.00 46.02 2.57
4410 7120 5.241506 CCCGTACCATGAAGCATATTTCATT 59.758 40.000 0.00 0.00 43.41 2.57
4411 7121 6.239008 CCCGTACCATGAAGCATATTTCATTT 60.239 38.462 0.00 0.00 43.41 2.32
4412 7122 7.040755 CCCGTACCATGAAGCATATTTCATTTA 60.041 37.037 0.00 0.00 43.41 1.40
4413 7123 8.017373 CCGTACCATGAAGCATATTTCATTTAG 58.983 37.037 0.00 0.00 43.41 1.85
4414 7124 7.535258 CGTACCATGAAGCATATTTCATTTAGC 59.465 37.037 0.00 0.00 43.41 3.09
4415 7125 7.592885 ACCATGAAGCATATTTCATTTAGCT 57.407 32.000 0.00 0.00 43.41 3.32
4416 7126 8.015185 ACCATGAAGCATATTTCATTTAGCTT 57.985 30.769 0.00 0.00 43.41 3.74
4417 7127 8.480501 ACCATGAAGCATATTTCATTTAGCTTT 58.519 29.630 0.00 0.00 43.41 3.51
4418 7128 9.321562 CCATGAAGCATATTTCATTTAGCTTTT 57.678 29.630 0.00 0.00 43.41 2.27
4449 7159 3.183775 CACTTTCGTTTAGTTGGTCGAGG 59.816 47.826 0.00 0.00 33.98 4.63
4450 7160 1.787012 TTCGTTTAGTTGGTCGAGGC 58.213 50.000 0.00 0.00 33.98 4.70
4455 7165 0.242825 TTAGTTGGTCGAGGCGTGAG 59.757 55.000 0.00 0.00 0.00 3.51
4492 7202 1.204704 TGTGTCGTTAGGCCTCTGATG 59.795 52.381 9.68 2.08 0.00 3.07
4502 7218 0.321919 GCCTCTGATGTGGTGCAGAA 60.322 55.000 0.00 0.00 40.33 3.02
4504 7220 1.271001 CCTCTGATGTGGTGCAGAACA 60.271 52.381 3.99 3.99 40.33 3.18
4506 7222 1.162698 CTGATGTGGTGCAGAACAGG 58.837 55.000 7.41 0.00 34.06 4.00
4513 7229 2.493278 GTGGTGCAGAACAGGCATATTT 59.507 45.455 0.00 0.00 44.11 1.40
4523 7239 2.283298 CAGGCATATTTCGCTGACAGT 58.717 47.619 3.99 0.00 0.00 3.55
4524 7240 2.031314 CAGGCATATTTCGCTGACAGTG 59.969 50.000 9.85 9.85 0.00 3.66
4534 7250 1.303799 GCTGACAGTGCATCACCTGG 61.304 60.000 3.99 0.00 34.49 4.45
4540 7262 0.469705 AGTGCATCACCTGGGCAAAA 60.470 50.000 0.00 0.00 39.57 2.44
4547 7269 1.458209 ACCTGGGCAAAAGCAGCTT 60.458 52.632 0.21 0.21 0.00 3.74
4559 7281 2.821991 AGCAGCTTTCGTACTTGTCT 57.178 45.000 0.00 0.00 0.00 3.41
4560 7282 3.113260 AGCAGCTTTCGTACTTGTCTT 57.887 42.857 0.00 0.00 0.00 3.01
4561 7283 4.252971 AGCAGCTTTCGTACTTGTCTTA 57.747 40.909 0.00 0.00 0.00 2.10
4588 7310 5.488341 AGGCAAATTAGTCGTAACTGATGT 58.512 37.500 0.00 0.00 36.92 3.06
4658 7380 2.057316 CTGCTTATGAGATTCTCGGCG 58.943 52.381 0.00 0.00 32.35 6.46
4875 7621 2.607750 GGAGTGGAGTGAGCCCCA 60.608 66.667 0.00 0.00 0.00 4.96
4912 7658 2.736670 ACCAGTTTCCATATCCCAGC 57.263 50.000 0.00 0.00 0.00 4.85
4913 7659 1.134098 ACCAGTTTCCATATCCCAGCG 60.134 52.381 0.00 0.00 0.00 5.18
4914 7660 1.134098 CCAGTTTCCATATCCCAGCGT 60.134 52.381 0.00 0.00 0.00 5.07
4915 7661 2.104111 CCAGTTTCCATATCCCAGCGTA 59.896 50.000 0.00 0.00 0.00 4.42
4916 7662 3.433031 CCAGTTTCCATATCCCAGCGTAA 60.433 47.826 0.00 0.00 0.00 3.18
4917 7663 4.389374 CAGTTTCCATATCCCAGCGTAAT 58.611 43.478 0.00 0.00 0.00 1.89
4918 7664 4.214119 CAGTTTCCATATCCCAGCGTAATG 59.786 45.833 0.00 0.00 0.00 1.90
4919 7665 2.472695 TCCATATCCCAGCGTAATGC 57.527 50.000 0.00 0.00 46.98 3.56
4958 7704 2.736995 TACGCCGCTTGTGCTCAC 60.737 61.111 0.00 0.00 36.97 3.51
5001 7752 0.673333 TGCGGGCAGGCATATATTCG 60.673 55.000 0.00 0.00 38.17 3.34
5002 7753 0.673644 GCGGGCAGGCATATATTCGT 60.674 55.000 0.00 0.00 0.00 3.85
5003 7754 1.078709 CGGGCAGGCATATATTCGTG 58.921 55.000 0.00 1.32 0.00 4.35
5004 7755 1.608025 CGGGCAGGCATATATTCGTGT 60.608 52.381 6.87 0.00 0.00 4.49
5005 7756 2.076863 GGGCAGGCATATATTCGTGTC 58.923 52.381 6.87 4.40 0.00 3.67
5006 7757 1.726791 GGCAGGCATATATTCGTGTCG 59.273 52.381 6.87 0.00 0.00 4.35
5007 7758 2.404215 GCAGGCATATATTCGTGTCGT 58.596 47.619 6.87 0.00 0.00 4.34
5010 7761 4.299155 CAGGCATATATTCGTGTCGTTCT 58.701 43.478 0.00 0.00 0.00 3.01
5034 7785 1.466856 TGGATTGCCTGCTCATCAAC 58.533 50.000 4.86 0.00 34.31 3.18
5047 7798 3.126831 CTCATCAACGGATAGACAAGGC 58.873 50.000 0.00 0.00 30.87 4.35
5066 7817 3.187842 AGGCAACGTCGTAAGGAATTTTC 59.812 43.478 0.00 0.00 46.39 2.29
5085 7841 6.575162 TTTTCCAGTAAAATCTCCTTGAGC 57.425 37.500 0.00 0.00 32.05 4.26
5086 7842 5.505181 TTCCAGTAAAATCTCCTTGAGCT 57.495 39.130 0.00 0.00 0.00 4.09
5087 7843 5.091261 TCCAGTAAAATCTCCTTGAGCTC 57.909 43.478 6.82 6.82 0.00 4.09
5140 7903 2.692557 AGAGATCACAAGTCGGATCCTG 59.307 50.000 10.75 3.48 40.59 3.86
5157 7920 3.631965 TCCTGCCAGGAAAGTTAGGCTT 61.632 50.000 12.03 0.00 42.51 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.649257 GCACACAGCGACGTCTGAC 61.649 63.158 20.87 2.90 37.51 3.51
14 15 2.354656 GCACACAGCGACGTCTGA 60.355 61.111 20.87 0.00 37.51 3.27
23 24 2.447887 CGATGACGAGGCACACAGC 61.448 63.158 0.00 0.00 42.66 4.40
24 25 2.447887 GCGATGACGAGGCACACAG 61.448 63.158 0.00 0.00 42.66 3.66
25 26 1.591504 TAGCGATGACGAGGCACACA 61.592 55.000 0.00 0.00 42.66 3.72
26 27 0.867753 CTAGCGATGACGAGGCACAC 60.868 60.000 0.00 0.00 42.66 3.82
27 28 1.029947 TCTAGCGATGACGAGGCACA 61.030 55.000 0.00 0.00 42.66 4.57
28 29 0.592754 GTCTAGCGATGACGAGGCAC 60.593 60.000 0.00 0.00 42.66 5.01
29 30 1.728069 GTCTAGCGATGACGAGGCA 59.272 57.895 0.00 0.00 42.66 4.75
30 31 4.618513 GTCTAGCGATGACGAGGC 57.381 61.111 0.00 0.00 42.66 4.70
35 36 0.029567 CCTGGACGTCTAGCGATGAC 59.970 60.000 22.41 0.00 44.77 3.06
36 37 0.107361 TCCTGGACGTCTAGCGATGA 60.107 55.000 22.41 11.82 44.77 2.92
37 38 0.309302 CTCCTGGACGTCTAGCGATG 59.691 60.000 22.41 9.68 44.77 3.84
38 39 1.448922 GCTCCTGGACGTCTAGCGAT 61.449 60.000 22.41 0.00 44.77 4.58
39 40 2.113433 GCTCCTGGACGTCTAGCGA 61.113 63.158 22.41 18.43 44.77 4.93
41 42 2.809010 GGCTCCTGGACGTCTAGC 59.191 66.667 22.41 19.90 0.00 3.42
42 43 3.111939 CGGCTCCTGGACGTCTAG 58.888 66.667 21.05 21.05 42.39 2.43
214 224 3.202818 TCCACCTGGTTGATGCAATAGAT 59.797 43.478 0.00 0.00 36.34 1.98
228 238 3.436243 AGACTTAGACTCTTCCACCTGG 58.564 50.000 0.00 0.00 0.00 4.45
243 253 6.255020 GCTGTTTAGCTAACGCAATAGACTTA 59.745 38.462 5.45 0.00 46.57 2.24
267 277 0.750850 TACTGGATAGCAAGTCCGGC 59.249 55.000 0.00 0.00 44.42 6.13
372 398 8.865978 CATTATTTTGTCATTGATCAGGTGTTG 58.134 33.333 0.00 0.00 0.00 3.33
438 464 0.863144 TTTGTTAAGAGTGGCGTCGC 59.137 50.000 9.22 9.22 0.00 5.19
586 617 9.368674 TGACATGCCAACATTCTAATTAATTTG 57.631 29.630 5.91 4.59 32.87 2.32
724 755 0.923358 AGAGGAGGTGTCGGAGATCT 59.077 55.000 0.00 0.00 40.67 2.75
726 757 2.423660 CCTTAGAGGAGGTGTCGGAGAT 60.424 54.545 0.00 0.00 36.57 2.75
793 824 4.292178 GATGCCGGAGAGAGCGGG 62.292 72.222 5.05 0.00 0.00 6.13
841 872 2.600769 AAGGGACGAGGCGAGTGT 60.601 61.111 0.00 0.00 0.00 3.55
863 894 9.851686 TTCATTTGCTAAATATCACTGACCTAT 57.148 29.630 0.00 0.00 0.00 2.57
895 926 7.563888 ACCTTCAATCATACACATCTGAATG 57.436 36.000 0.00 0.00 38.93 2.67
935 966 6.488344 TGTAAGACAAATGTGGTATTGCAAGA 59.512 34.615 4.94 0.00 31.00 3.02
960 991 3.995199 TCAAGTGCGAACAGAGAAAGAT 58.005 40.909 0.00 0.00 0.00 2.40
968 999 1.063912 TGTGCTTTCAAGTGCGAACAG 59.936 47.619 0.00 0.00 0.00 3.16
1086 1117 0.028110 GCCCGACGTACTTACTACCG 59.972 60.000 0.00 0.00 0.00 4.02
1224 1255 9.013229 TGGAATATATAACCATTCTTGTGCATC 57.987 33.333 7.27 0.00 32.77 3.91
1294 1367 3.117474 TCCAACAGGGTGATGGTTTGTAA 60.117 43.478 3.44 0.00 40.69 2.41
1379 1452 5.049818 GTCCTAACACAATCATGCATAGAGC 60.050 44.000 0.00 0.00 45.96 4.09
1409 1482 2.275134 ACATCAACATGCAGACACCA 57.725 45.000 0.00 0.00 32.57 4.17
1411 1484 2.923605 GCCAACATCAACATGCAGACAC 60.924 50.000 0.00 0.00 32.57 3.67
1493 1566 5.163602 TGTCACAGGATTTTGTAAACCACAC 60.164 40.000 0.00 0.00 36.69 3.82
1532 1605 2.038426 TGTGTGATCGAAACAGGTCCAT 59.962 45.455 4.66 0.00 0.00 3.41
1533 1606 1.414550 TGTGTGATCGAAACAGGTCCA 59.585 47.619 4.66 0.00 0.00 4.02
1732 1807 4.081917 TCACGACAATAGACCAAGCACATA 60.082 41.667 0.00 0.00 0.00 2.29
1783 1858 6.100279 CCATCCTAAGCTAATGGGCTATCATA 59.900 42.308 8.69 0.00 42.24 2.15
1793 1872 3.392616 AGGTCACCCATCCTAAGCTAATG 59.607 47.826 0.00 0.00 31.66 1.90
1794 1873 3.648545 GAGGTCACCCATCCTAAGCTAAT 59.351 47.826 0.00 0.00 33.83 1.73
1795 1874 3.039011 GAGGTCACCCATCCTAAGCTAA 58.961 50.000 0.00 0.00 33.83 3.09
1796 1875 2.679082 GAGGTCACCCATCCTAAGCTA 58.321 52.381 0.00 0.00 33.83 3.32
1797 1876 1.501582 GAGGTCACCCATCCTAAGCT 58.498 55.000 0.00 0.00 33.83 3.74
1798 1877 0.470341 GGAGGTCACCCATCCTAAGC 59.530 60.000 0.00 0.00 33.83 3.09
1799 1878 1.765314 CAGGAGGTCACCCATCCTAAG 59.235 57.143 4.27 0.00 36.69 2.18
1800 1879 1.625228 CCAGGAGGTCACCCATCCTAA 60.625 57.143 4.27 0.00 36.69 2.69
1801 1880 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
1802 1881 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
1803 1882 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
1804 1883 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
1805 1884 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
1806 1885 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
1807 1886 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
1808 1887 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
1811 1890 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
1812 1891 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
1813 1892 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
1814 1893 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
1815 1894 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
1816 1895 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
1817 1896 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
1818 1897 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
1819 1898 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
1820 1899 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
1821 1900 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
1822 1901 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
1823 1902 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
1824 1903 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
1832 1911 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
1833 1912 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
1834 1913 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
1835 1914 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
1836 1915 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
1837 1916 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
1838 1917 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
1839 1918 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
1840 1919 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
1841 1920 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
1842 1921 5.568620 AAAGTTGGGGTAGGCTAGATATG 57.431 43.478 0.00 0.00 0.00 1.78
1843 1922 6.592207 AAAAAGTTGGGGTAGGCTAGATAT 57.408 37.500 0.00 0.00 0.00 1.63
1845 1924 4.948062 AAAAAGTTGGGGTAGGCTAGAT 57.052 40.909 0.00 0.00 0.00 1.98
1863 1942 6.651975 TTACGAAGCCTTTAATCCCAAAAA 57.348 33.333 0.00 0.00 0.00 1.94
1864 1943 6.262193 CTTACGAAGCCTTTAATCCCAAAA 57.738 37.500 0.00 0.00 0.00 2.44
1865 1944 5.890424 CTTACGAAGCCTTTAATCCCAAA 57.110 39.130 0.00 0.00 0.00 3.28
1878 1957 7.401162 GCTACTGCTTACTTGCTTACGAAGC 62.401 48.000 11.24 11.24 44.67 3.86
1879 1958 4.031878 GCTACTGCTTACTTGCTTACGAAG 59.968 45.833 0.00 0.00 36.03 3.79
1880 1959 3.924686 GCTACTGCTTACTTGCTTACGAA 59.075 43.478 0.00 0.00 36.03 3.85
1881 1960 3.508762 GCTACTGCTTACTTGCTTACGA 58.491 45.455 0.00 0.00 36.03 3.43
1882 1961 3.909019 GCTACTGCTTACTTGCTTACG 57.091 47.619 0.00 0.00 36.03 3.18
1895 1974 9.928236 CAAATTATAGAAAAGAGAAGCTACTGC 57.072 33.333 0.00 0.00 40.05 4.40
2048 2127 9.485591 GTATAACATACCAGTGTTTTGAAATCG 57.514 33.333 0.00 0.00 42.08 3.34
2161 2240 1.337118 GAAAAATGGTGGTGGGAGCA 58.663 50.000 0.00 0.00 0.00 4.26
2252 2332 6.817765 ATAAGAGCACATTTCCTTTTTCGA 57.182 33.333 0.00 0.00 0.00 3.71
2369 2451 8.815141 TTGATTTGTTTGTGGTCAATTATCAG 57.185 30.769 0.00 0.00 33.32 2.90
2499 2588 4.081198 AGTTGAATTTTGCAAAGTGGGACA 60.081 37.500 12.41 6.10 0.00 4.02
2528 2617 3.138304 TGCGATATAACATGCCTGGAAC 58.862 45.455 0.00 0.00 0.00 3.62
2653 2743 1.064505 CCCAGCGCACATCTGTAAATG 59.935 52.381 11.47 0.00 0.00 2.32
2773 2863 6.479990 CGCTTGAACTTCTGGAATATATGTCA 59.520 38.462 0.00 0.00 0.00 3.58
2815 2905 4.888038 TCATGTTATCTGTGCATGCTTC 57.112 40.909 20.33 12.47 39.64 3.86
2882 2973 5.339177 TCGTGCATATTATTGGCAAAACTG 58.661 37.500 3.01 0.00 39.57 3.16
2884 2975 5.577835 TCTCGTGCATATTATTGGCAAAAC 58.422 37.500 3.01 0.00 39.57 2.43
2903 2994 8.276325 GGAGTAATAAATTACATGCAGTTCTCG 58.724 37.037 13.76 0.00 43.83 4.04
2925 3016 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2926 3017 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2927 3018 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2928 3019 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2929 3020 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2930 3021 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2931 3022 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2932 3023 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2945 3036 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2946 3037 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2947 3038 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2948 3039 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2949 3040 7.657761 GGTCACTTGTTGAAATCTCTAGAAAGA 59.342 37.037 0.00 0.00 35.39 2.52
2950 3041 7.442364 TGGTCACTTGTTGAAATCTCTAGAAAG 59.558 37.037 0.00 0.00 35.39 2.62
2951 3042 7.226720 GTGGTCACTTGTTGAAATCTCTAGAAA 59.773 37.037 0.00 0.00 35.39 2.52
2952 3043 6.706270 GTGGTCACTTGTTGAAATCTCTAGAA 59.294 38.462 0.00 0.00 35.39 2.10
2953 3044 6.183360 TGTGGTCACTTGTTGAAATCTCTAGA 60.183 38.462 2.66 0.00 35.39 2.43
2954 3045 5.991606 TGTGGTCACTTGTTGAAATCTCTAG 59.008 40.000 2.66 0.00 35.39 2.43
2955 3046 5.924356 TGTGGTCACTTGTTGAAATCTCTA 58.076 37.500 2.66 0.00 35.39 2.43
2956 3047 4.780815 TGTGGTCACTTGTTGAAATCTCT 58.219 39.130 2.66 0.00 35.39 3.10
2957 3048 5.695851 ATGTGGTCACTTGTTGAAATCTC 57.304 39.130 2.66 0.00 35.39 2.75
2958 3049 5.179368 CGTATGTGGTCACTTGTTGAAATCT 59.821 40.000 2.66 0.00 35.39 2.40
2959 3050 5.382303 CGTATGTGGTCACTTGTTGAAATC 58.618 41.667 2.66 0.00 35.39 2.17
2960 3051 4.215399 CCGTATGTGGTCACTTGTTGAAAT 59.785 41.667 2.66 0.00 35.39 2.17
2961 3052 3.562141 CCGTATGTGGTCACTTGTTGAAA 59.438 43.478 2.66 0.00 35.39 2.69
2962 3053 3.135225 CCGTATGTGGTCACTTGTTGAA 58.865 45.455 2.66 0.00 35.39 2.69
2963 3054 2.365941 TCCGTATGTGGTCACTTGTTGA 59.634 45.455 2.66 0.00 0.00 3.18
2964 3055 2.736721 CTCCGTATGTGGTCACTTGTTG 59.263 50.000 2.66 0.00 0.00 3.33
2965 3056 2.870435 GCTCCGTATGTGGTCACTTGTT 60.870 50.000 2.66 0.00 0.00 2.83
2966 3057 1.337823 GCTCCGTATGTGGTCACTTGT 60.338 52.381 2.66 0.00 0.00 3.16
2967 3058 1.337728 TGCTCCGTATGTGGTCACTTG 60.338 52.381 2.66 0.00 0.00 3.16
2968 3059 0.973632 TGCTCCGTATGTGGTCACTT 59.026 50.000 2.66 0.00 0.00 3.16
2969 3060 0.973632 TTGCTCCGTATGTGGTCACT 59.026 50.000 2.66 0.00 0.00 3.41
2970 3061 1.803334 TTTGCTCCGTATGTGGTCAC 58.197 50.000 0.00 0.00 0.00 3.67
2971 3062 2.552599 TTTTGCTCCGTATGTGGTCA 57.447 45.000 0.00 0.00 0.00 4.02
2972 3063 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
2973 3064 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
2974 3065 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
2975 3066 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
2976 3067 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2977 3068 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2978 3069 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2979 3070 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2980 3071 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2981 3072 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2982 3073 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2983 3074 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3017 3108 9.682465 GGACTACCACATACAGATGTATATAGA 57.318 37.037 5.21 0.00 44.82 1.98
3018 3109 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
3036 3127 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
3037 3128 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
3038 3129 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
3039 3130 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
3040 3131 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
3041 3132 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
3054 3145 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3055 3146 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3056 3147 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3057 3148 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3058 3149 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3059 3150 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3060 3151 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3061 3152 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3062 3153 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3063 3154 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3064 3155 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3065 3156 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3066 3157 6.842807 TCTTACTCCCTCCGTTCCTAAATATT 59.157 38.462 0.00 0.00 0.00 1.28
3067 3158 6.379579 TCTTACTCCCTCCGTTCCTAAATAT 58.620 40.000 0.00 0.00 0.00 1.28
3068 3159 5.769835 TCTTACTCCCTCCGTTCCTAAATA 58.230 41.667 0.00 0.00 0.00 1.40
3069 3160 4.617593 TCTTACTCCCTCCGTTCCTAAAT 58.382 43.478 0.00 0.00 0.00 1.40
3070 3161 4.051661 TCTTACTCCCTCCGTTCCTAAA 57.948 45.455 0.00 0.00 0.00 1.85
3071 3162 3.744940 TCTTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
3072 3163 3.629087 CTTCTTACTCCCTCCGTTCCTA 58.371 50.000 0.00 0.00 0.00 2.94
3073 3164 2.458620 CTTCTTACTCCCTCCGTTCCT 58.541 52.381 0.00 0.00 0.00 3.36
3074 3165 1.134759 GCTTCTTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
3075 3166 1.549170 TGCTTCTTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
3076 3167 1.640917 TGCTTCTTACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
3077 3168 1.275573 GTTGCTTCTTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
3078 3169 1.275291 TGTTGCTTCTTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
3079 3170 2.303311 AGTGTTGCTTCTTACTCCCTCC 59.697 50.000 0.00 0.00 0.00 4.30
3080 3171 3.330267 CAGTGTTGCTTCTTACTCCCTC 58.670 50.000 0.00 0.00 0.00 4.30
3081 3172 2.551071 GCAGTGTTGCTTCTTACTCCCT 60.551 50.000 0.00 0.00 46.95 4.20
3082 3173 1.807142 GCAGTGTTGCTTCTTACTCCC 59.193 52.381 0.00 0.00 46.95 4.30
3124 3215 1.035385 GCCCAACGGACCCTAAATGG 61.035 60.000 0.00 0.00 0.00 3.16
3133 5839 2.040544 CACCAGATGCCCAACGGAC 61.041 63.158 0.00 0.00 0.00 4.79
3242 5950 0.109873 GCTGTGCTGCACTGTGATTC 60.110 55.000 31.15 16.48 36.06 2.52
3254 5962 1.335810 CAGTGTTTGATGTGCTGTGCT 59.664 47.619 0.00 0.00 0.00 4.40
3421 6131 8.947115 CAAGGGAGTAGTTTTTAACCTATTCAG 58.053 37.037 0.00 0.00 0.00 3.02
3449 6159 0.808755 GATAACCCACAACAAGCCCG 59.191 55.000 0.00 0.00 0.00 6.13
3505 6215 5.249852 TGAACTATACTACCAAAAGGGCACT 59.750 40.000 0.00 0.00 42.05 4.40
3530 6240 9.621629 TTAGAAAACATAAAGTGAAACAGGAGA 57.378 29.630 0.00 0.00 41.43 3.71
3716 6426 1.977854 ACTGCAGTCCACACCTTATCA 59.022 47.619 15.25 0.00 0.00 2.15
3767 6477 7.611855 ACAAAACAGCCTAATAGCAGTCTTAAT 59.388 33.333 0.00 0.00 30.35 1.40
3831 6541 7.524912 CAAGATCGATCAGAAAACTTCACAAT 58.475 34.615 26.47 0.00 0.00 2.71
3938 6648 7.953710 GCAGCAAATTTATCTGTCATTGTTTTC 59.046 33.333 16.33 0.00 0.00 2.29
3974 6684 2.682494 GGTGGGCGTACCTGGAGA 60.682 66.667 0.00 0.00 41.11 3.71
4023 6733 2.102252 TGCCAACTGAAAACATGAACCC 59.898 45.455 0.00 0.00 0.00 4.11
4078 6788 3.066369 TGCGACTAATAGCAGTTCTCG 57.934 47.619 0.00 0.00 38.59 4.04
4156 6866 6.815641 AGTTACTCTTCACACTTATCTGCATG 59.184 38.462 0.00 0.00 0.00 4.06
4157 6867 6.940739 AGTTACTCTTCACACTTATCTGCAT 58.059 36.000 0.00 0.00 0.00 3.96
4247 6957 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
4261 6971 1.202521 AGATGTCAGTTGTCACGCACA 60.203 47.619 0.00 0.00 0.00 4.57
4262 6972 1.502231 AGATGTCAGTTGTCACGCAC 58.498 50.000 0.00 0.00 0.00 5.34
4263 6973 2.238942 AAGATGTCAGTTGTCACGCA 57.761 45.000 0.00 0.00 0.00 5.24
4264 6974 2.287915 ACAAAGATGTCAGTTGTCACGC 59.712 45.455 0.00 0.00 33.41 5.34
4265 6975 4.274069 CAACAAAGATGTCAGTTGTCACG 58.726 43.478 0.00 0.00 39.40 4.35
4317 7027 8.147244 AGGCTGAAGAACTTTTAAGAGGTATA 57.853 34.615 0.00 0.00 0.00 1.47
4318 7028 7.021998 AGGCTGAAGAACTTTTAAGAGGTAT 57.978 36.000 0.00 0.00 0.00 2.73
4330 7040 1.889545 GACTGCAAGGCTGAAGAACT 58.110 50.000 2.04 0.00 40.68 3.01
4382 7092 2.570415 TGCTTCATGGTACGGGAAAA 57.430 45.000 0.00 0.00 0.00 2.29
4388 7098 7.535258 GCTAAATGAAATATGCTTCATGGTACG 59.465 37.037 3.87 0.00 43.65 3.67
4392 7102 8.882415 AAAGCTAAATGAAATATGCTTCATGG 57.118 30.769 3.87 0.83 43.65 3.66
4429 7139 2.157085 GCCTCGACCAACTAAACGAAAG 59.843 50.000 0.00 0.00 34.50 2.62
4430 7140 2.137523 GCCTCGACCAACTAAACGAAA 58.862 47.619 0.00 0.00 34.50 3.46
4431 7141 1.787012 GCCTCGACCAACTAAACGAA 58.213 50.000 0.00 0.00 34.50 3.85
4432 7142 0.387622 CGCCTCGACCAACTAAACGA 60.388 55.000 0.00 0.00 0.00 3.85
4433 7143 0.665369 ACGCCTCGACCAACTAAACG 60.665 55.000 0.00 0.00 0.00 3.60
4434 7144 0.788391 CACGCCTCGACCAACTAAAC 59.212 55.000 0.00 0.00 0.00 2.01
4435 7145 0.675083 TCACGCCTCGACCAACTAAA 59.325 50.000 0.00 0.00 0.00 1.85
4436 7146 0.242825 CTCACGCCTCGACCAACTAA 59.757 55.000 0.00 0.00 0.00 2.24
4437 7147 1.880894 CTCACGCCTCGACCAACTA 59.119 57.895 0.00 0.00 0.00 2.24
4468 7178 0.389948 GAGGCCTAACGACACACCAG 60.390 60.000 4.42 0.00 0.00 4.00
4469 7179 0.830444 AGAGGCCTAACGACACACCA 60.830 55.000 4.42 0.00 0.00 4.17
4474 7184 1.204704 CACATCAGAGGCCTAACGACA 59.795 52.381 4.42 0.00 0.00 4.35
4492 7202 1.755179 ATATGCCTGTTCTGCACCAC 58.245 50.000 0.00 0.00 42.38 4.16
4502 7218 2.283298 CTGTCAGCGAAATATGCCTGT 58.717 47.619 0.00 0.00 0.00 4.00
4504 7220 2.283298 CACTGTCAGCGAAATATGCCT 58.717 47.619 0.00 0.00 0.00 4.75
4506 7222 1.398041 TGCACTGTCAGCGAAATATGC 59.602 47.619 0.00 1.04 33.85 3.14
4513 7229 1.374631 GGTGATGCACTGTCAGCGA 60.375 57.895 0.00 0.00 34.83 4.93
4523 7239 1.818959 GCTTTTGCCCAGGTGATGCA 61.819 55.000 0.00 0.00 40.15 3.96
4524 7240 1.079612 GCTTTTGCCCAGGTGATGC 60.080 57.895 0.00 0.00 40.15 3.91
4534 7250 1.266989 AGTACGAAAGCTGCTTTTGCC 59.733 47.619 32.22 24.76 46.87 4.52
4540 7262 2.821991 AGACAAGTACGAAAGCTGCT 57.178 45.000 0.00 0.00 0.00 4.24
4547 7269 3.512329 TGCCTCCATAAGACAAGTACGAA 59.488 43.478 0.00 0.00 0.00 3.85
4559 7281 6.537301 CAGTTACGACTAATTTGCCTCCATAA 59.463 38.462 0.00 0.00 33.90 1.90
4560 7282 6.046593 CAGTTACGACTAATTTGCCTCCATA 58.953 40.000 0.00 0.00 33.90 2.74
4561 7283 4.876107 CAGTTACGACTAATTTGCCTCCAT 59.124 41.667 0.00 0.00 33.90 3.41
4588 7310 8.440771 GGAGAAAGGATCTTCCCAATAGATTAA 58.559 37.037 0.00 0.00 38.96 1.40
4658 7380 2.157738 GGGGCATCATCATCAGCTTAC 58.842 52.381 0.00 0.00 0.00 2.34
4695 7417 2.718062 TGGGCCAACTCCATCATCATAT 59.282 45.455 2.13 0.00 0.00 1.78
4697 7419 0.928505 TGGGCCAACTCCATCATCAT 59.071 50.000 2.13 0.00 0.00 2.45
4728 7450 2.639327 GGCAAGCATTTCGGTGGCT 61.639 57.895 0.00 0.00 42.11 4.75
4875 7621 2.896685 TGGTTTGCCATTTCCGAGAAAT 59.103 40.909 6.17 6.17 40.46 2.17
4912 7658 3.727673 CGAATTGGACTGTTGGCATTACG 60.728 47.826 0.00 0.00 0.00 3.18
4913 7659 3.190535 ACGAATTGGACTGTTGGCATTAC 59.809 43.478 0.00 0.00 0.00 1.89
4914 7660 3.417101 ACGAATTGGACTGTTGGCATTA 58.583 40.909 0.00 0.00 0.00 1.90
4915 7661 2.228822 GACGAATTGGACTGTTGGCATT 59.771 45.455 0.00 0.00 0.00 3.56
4916 7662 1.812571 GACGAATTGGACTGTTGGCAT 59.187 47.619 0.00 0.00 0.00 4.40
4917 7663 1.202758 AGACGAATTGGACTGTTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
4918 7664 1.464997 GAGACGAATTGGACTGTTGGC 59.535 52.381 0.00 0.00 0.00 4.52
4919 7665 1.726791 CGAGACGAATTGGACTGTTGG 59.273 52.381 0.00 0.00 0.00 3.77
5022 7773 2.101415 TGTCTATCCGTTGATGAGCAGG 59.899 50.000 0.00 0.00 32.18 4.85
5026 7777 3.126831 GCCTTGTCTATCCGTTGATGAG 58.873 50.000 0.00 0.00 32.18 2.90
5027 7778 2.499693 TGCCTTGTCTATCCGTTGATGA 59.500 45.455 0.00 0.00 32.18 2.92
5028 7779 2.905075 TGCCTTGTCTATCCGTTGATG 58.095 47.619 0.00 0.00 32.18 3.07
5034 7785 1.278238 GACGTTGCCTTGTCTATCCG 58.722 55.000 0.00 0.00 32.37 4.18
5066 7817 4.874966 CAGAGCTCAAGGAGATTTTACTGG 59.125 45.833 17.77 0.00 0.00 4.00
5068 7819 4.512484 GCAGAGCTCAAGGAGATTTTACT 58.488 43.478 17.77 0.00 0.00 2.24
5069 7820 3.625313 GGCAGAGCTCAAGGAGATTTTAC 59.375 47.826 17.77 0.00 0.00 2.01
5070 7821 3.679917 CGGCAGAGCTCAAGGAGATTTTA 60.680 47.826 17.77 0.00 0.00 1.52
5077 7833 1.687146 ATCCGGCAGAGCTCAAGGA 60.687 57.895 17.77 17.65 0.00 3.36
5085 7841 0.596083 GACGATGTCATCCGGCAGAG 60.596 60.000 7.25 0.00 33.27 3.35
5086 7842 1.437573 GACGATGTCATCCGGCAGA 59.562 57.895 7.25 0.00 33.27 4.26
5087 7843 1.946156 CGACGATGTCATCCGGCAG 60.946 63.158 7.25 0.00 32.40 4.85
5140 7903 2.007608 CGTAAGCCTAACTTTCCTGGC 58.992 52.381 0.00 0.00 45.21 4.85
5157 7920 3.051327 TGTCGTCGCAAAATTCTTCGTA 58.949 40.909 0.00 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.