Multiple sequence alignment - TraesCS3B01G335000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G335000 chr3B 100.000 6764 0 0 1 6764 541086434 541079671 0.000000e+00 12491.0
1 TraesCS3B01G335000 chr3B 88.987 790 59 13 1 767 671848758 671847974 0.000000e+00 952.0
2 TraesCS3B01G335000 chr3A 90.811 5104 310 52 903 5899 535194916 535199967 0.000000e+00 6680.0
3 TraesCS3B01G335000 chr3A 91.892 481 28 10 201 672 659520794 659521272 0.000000e+00 662.0
4 TraesCS3B01G335000 chr3A 82.413 489 49 17 5920 6403 535200086 535200542 6.360000e-105 392.0
5 TraesCS3B01G335000 chr3D 91.046 2993 188 45 2944 5905 415158277 415155334 0.000000e+00 3969.0
6 TraesCS3B01G335000 chr3D 90.194 1805 109 33 1099 2844 415160162 415158367 0.000000e+00 2290.0
7 TraesCS3B01G335000 chr3D 96.690 846 27 1 5920 6764 415155218 415154373 0.000000e+00 1406.0
8 TraesCS3B01G335000 chr4D 90.759 790 43 17 1 766 381545385 381544602 0.000000e+00 1027.0
9 TraesCS3B01G335000 chr1B 90.089 787 53 12 1 766 519532158 519532940 0.000000e+00 998.0
10 TraesCS3B01G335000 chr7D 89.237 799 43 15 1 766 77440632 77441420 0.000000e+00 959.0
11 TraesCS3B01G335000 chr5B 88.986 799 55 21 1 766 606902891 606903689 0.000000e+00 957.0
12 TraesCS3B01G335000 chr5B 91.235 502 39 4 269 766 185187529 185187029 0.000000e+00 678.0
13 TraesCS3B01G335000 chr5B 91.892 481 27 11 201 672 491093662 491093185 0.000000e+00 662.0
14 TraesCS3B01G335000 chr2B 88.750 800 58 15 1 769 7271530 7270732 0.000000e+00 950.0
15 TraesCS3B01G335000 chr2B 88.184 804 58 17 1 769 159570995 159570194 0.000000e+00 924.0
16 TraesCS3B01G335000 chr2B 87.287 763 65 15 1 753 404406317 404407057 0.000000e+00 843.0
17 TraesCS3B01G335000 chr7B 88.875 782 57 15 7 766 228810496 228809723 0.000000e+00 935.0
18 TraesCS3B01G335000 chr7B 88.945 787 43 24 7 755 59175875 59175095 0.000000e+00 931.0
19 TraesCS3B01G335000 chr7B 86.330 812 59 21 1 769 329779379 329778577 0.000000e+00 837.0
20 TraesCS3B01G335000 chr7B 89.762 547 34 9 1 525 583216460 583217006 0.000000e+00 680.0
21 TraesCS3B01G335000 chr4B 88.486 799 56 19 1 766 664048636 664047841 0.000000e+00 933.0
22 TraesCS3B01G335000 chr2D 91.000 500 36 6 275 767 72956225 72955728 0.000000e+00 665.0
23 TraesCS3B01G335000 chr1D 92.908 141 8 2 630 768 209564981 209564841 3.200000e-48 204.0
24 TraesCS3B01G335000 chr5D 79.518 166 22 8 6602 6762 121344143 121343985 2.580000e-19 108.0
25 TraesCS3B01G335000 chr6A 92.727 55 4 0 5793 5847 13742494 13742440 5.620000e-11 80.5
26 TraesCS3B01G335000 chr6D 92.453 53 4 0 5793 5845 12366651 12366599 7.270000e-10 76.8
27 TraesCS3B01G335000 chr6B 91.667 48 4 0 5798 5845 22723895 22723848 4.380000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G335000 chr3B 541079671 541086434 6763 True 12491 12491 100.000000 1 6764 1 chr3B.!!$R1 6763
1 TraesCS3B01G335000 chr3B 671847974 671848758 784 True 952 952 88.987000 1 767 1 chr3B.!!$R2 766
2 TraesCS3B01G335000 chr3A 535194916 535200542 5626 False 3536 6680 86.612000 903 6403 2 chr3A.!!$F2 5500
3 TraesCS3B01G335000 chr3D 415154373 415160162 5789 True 2555 3969 92.643333 1099 6764 3 chr3D.!!$R1 5665
4 TraesCS3B01G335000 chr4D 381544602 381545385 783 True 1027 1027 90.759000 1 766 1 chr4D.!!$R1 765
5 TraesCS3B01G335000 chr1B 519532158 519532940 782 False 998 998 90.089000 1 766 1 chr1B.!!$F1 765
6 TraesCS3B01G335000 chr7D 77440632 77441420 788 False 959 959 89.237000 1 766 1 chr7D.!!$F1 765
7 TraesCS3B01G335000 chr5B 606902891 606903689 798 False 957 957 88.986000 1 766 1 chr5B.!!$F1 765
8 TraesCS3B01G335000 chr5B 185187029 185187529 500 True 678 678 91.235000 269 766 1 chr5B.!!$R1 497
9 TraesCS3B01G335000 chr2B 7270732 7271530 798 True 950 950 88.750000 1 769 1 chr2B.!!$R1 768
10 TraesCS3B01G335000 chr2B 159570194 159570995 801 True 924 924 88.184000 1 769 1 chr2B.!!$R2 768
11 TraesCS3B01G335000 chr2B 404406317 404407057 740 False 843 843 87.287000 1 753 1 chr2B.!!$F1 752
12 TraesCS3B01G335000 chr7B 228809723 228810496 773 True 935 935 88.875000 7 766 1 chr7B.!!$R2 759
13 TraesCS3B01G335000 chr7B 59175095 59175875 780 True 931 931 88.945000 7 755 1 chr7B.!!$R1 748
14 TraesCS3B01G335000 chr7B 329778577 329779379 802 True 837 837 86.330000 1 769 1 chr7B.!!$R3 768
15 TraesCS3B01G335000 chr7B 583216460 583217006 546 False 680 680 89.762000 1 525 1 chr7B.!!$F1 524
16 TraesCS3B01G335000 chr4B 664047841 664048636 795 True 933 933 88.486000 1 766 1 chr4B.!!$R1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1070 0.032130 CGTCTATCCACCCACATCCG 59.968 60.0 0.00 0.0 0.0 4.18 F
1034 1117 0.880278 GAGACAGAGCGCAACACCAA 60.880 55.0 11.47 0.0 0.0 3.67 F
2588 2758 0.870393 CTGAGCTGCGTGACACAATT 59.130 50.0 6.37 0.0 0.0 2.32 F
3051 3225 0.038744 CTGGGGCTGAACTGAACCAT 59.961 55.0 0.00 0.0 0.0 3.55 F
3343 3519 0.734889 CATGGATGGAGACGGCAAAC 59.265 55.0 0.00 0.0 0.0 2.93 F
4725 4928 0.041839 CTGTGCGTTGACTGTTCTGC 60.042 55.0 0.00 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2678 0.746063 TCTGCACTGCAACAAAAGGG 59.254 50.0 4.99 0.00 38.41 3.95 R
3033 3207 0.482446 AATGGTTCAGTTCAGCCCCA 59.518 50.0 0.00 0.00 0.00 4.96 R
4131 4319 0.242555 TGCACACAATGAGCATGCAG 59.757 50.0 21.98 6.52 38.97 4.41 R
4254 4446 0.617413 AGGAGTTCTGGGTCAGCATG 59.383 55.0 0.00 0.00 37.54 4.06 R
5072 5280 0.035439 CGGTGTAGGGGTGCTCAAAT 60.035 55.0 0.00 0.00 0.00 2.32 R
6118 6436 0.385390 CTTGTTGAAGCGCTTTGGGT 59.615 50.0 25.84 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.537188 CCTTGGATAGTGCTCGTGGT 59.463 55.000 0.00 0.00 0.00 4.16
239 250 4.806481 CGTGCGACGACGACGGAT 62.806 66.667 20.21 0.00 46.05 4.18
243 264 4.247612 CGACGACGACGGATCCCC 62.248 72.222 12.58 0.00 44.46 4.81
286 307 5.531287 CGGATTCCCTTAAAAATGGTAGGAG 59.469 44.000 0.00 0.00 0.00 3.69
296 317 4.667519 AAATGGTAGGAGTGGATACGAC 57.332 45.455 0.00 0.00 42.51 4.34
304 325 2.688446 GGAGTGGATACGACTGATGACA 59.312 50.000 0.00 0.00 42.51 3.58
457 481 8.125733 TCCCCAAATAAGGAAGGAAAATTATGA 58.874 33.333 0.00 0.00 0.00 2.15
489 513 5.470777 TCGGAAGGAAACAAACGTTATGAAT 59.529 36.000 0.00 0.00 0.00 2.57
649 689 1.364269 TAAACCGATGAAGTGGGGGT 58.636 50.000 0.00 0.00 0.00 4.95
769 841 9.153479 ACTGCTTCATTAGGAATAGAGATAGTT 57.847 33.333 0.00 0.00 34.32 2.24
770 842 9.995003 CTGCTTCATTAGGAATAGAGATAGTTT 57.005 33.333 0.00 0.00 34.32 2.66
771 843 9.770097 TGCTTCATTAGGAATAGAGATAGTTTG 57.230 33.333 0.00 0.00 34.32 2.93
772 844 9.988815 GCTTCATTAGGAATAGAGATAGTTTGA 57.011 33.333 0.00 0.00 34.32 2.69
788 860 5.803020 AGTTTGATAATCGAACTGAAGGC 57.197 39.130 0.00 0.00 46.42 4.35
789 861 5.245531 AGTTTGATAATCGAACTGAAGGCA 58.754 37.500 0.00 0.00 46.42 4.75
790 862 5.705441 AGTTTGATAATCGAACTGAAGGCAA 59.295 36.000 0.00 0.00 46.42 4.52
791 863 5.801350 TTGATAATCGAACTGAAGGCAAG 57.199 39.130 0.00 0.00 0.00 4.01
792 864 4.191544 TGATAATCGAACTGAAGGCAAGG 58.808 43.478 0.00 0.00 0.00 3.61
793 865 2.568623 AATCGAACTGAAGGCAAGGT 57.431 45.000 0.00 0.00 0.00 3.50
794 866 3.695830 AATCGAACTGAAGGCAAGGTA 57.304 42.857 0.00 0.00 0.00 3.08
795 867 3.695830 ATCGAACTGAAGGCAAGGTAA 57.304 42.857 0.00 0.00 0.00 2.85
796 868 2.762745 TCGAACTGAAGGCAAGGTAAC 58.237 47.619 0.00 0.00 0.00 2.50
797 869 1.804748 CGAACTGAAGGCAAGGTAACC 59.195 52.381 0.00 0.00 37.17 2.85
798 870 2.808933 CGAACTGAAGGCAAGGTAACCA 60.809 50.000 0.00 0.00 37.17 3.67
799 871 3.421844 GAACTGAAGGCAAGGTAACCAT 58.578 45.455 0.00 0.00 37.17 3.55
800 872 4.585879 GAACTGAAGGCAAGGTAACCATA 58.414 43.478 0.00 0.00 37.17 2.74
801 873 4.222124 ACTGAAGGCAAGGTAACCATAG 57.778 45.455 0.00 0.00 37.17 2.23
802 874 3.054361 ACTGAAGGCAAGGTAACCATAGG 60.054 47.826 0.00 0.00 37.17 2.57
803 875 2.241176 TGAAGGCAAGGTAACCATAGGG 59.759 50.000 0.00 0.00 41.29 3.53
815 887 2.254546 CCATAGGGTCTATGCGCAAA 57.745 50.000 17.11 0.00 0.00 3.68
816 888 2.571212 CCATAGGGTCTATGCGCAAAA 58.429 47.619 17.11 4.61 0.00 2.44
817 889 2.948979 CCATAGGGTCTATGCGCAAAAA 59.051 45.455 17.11 1.52 0.00 1.94
818 890 3.243068 CCATAGGGTCTATGCGCAAAAAC 60.243 47.826 17.11 12.62 0.00 2.43
819 891 1.904287 AGGGTCTATGCGCAAAAACA 58.096 45.000 17.11 0.00 0.00 2.83
820 892 2.235016 AGGGTCTATGCGCAAAAACAA 58.765 42.857 17.11 0.00 0.00 2.83
821 893 2.625790 AGGGTCTATGCGCAAAAACAAA 59.374 40.909 17.11 0.00 0.00 2.83
822 894 3.068873 AGGGTCTATGCGCAAAAACAAAA 59.931 39.130 17.11 0.00 0.00 2.44
823 895 3.804873 GGGTCTATGCGCAAAAACAAAAA 59.195 39.130 17.11 0.00 0.00 1.94
849 921 3.536917 CCATAGGGTCGCGGCAGA 61.537 66.667 14.93 0.00 0.00 4.26
850 922 2.499205 CATAGGGTCGCGGCAGAA 59.501 61.111 14.93 0.00 0.00 3.02
851 923 1.153449 CATAGGGTCGCGGCAGAAA 60.153 57.895 14.93 0.00 0.00 2.52
852 924 0.532862 CATAGGGTCGCGGCAGAAAT 60.533 55.000 14.93 0.00 0.00 2.17
853 925 0.180406 ATAGGGTCGCGGCAGAAATT 59.820 50.000 14.93 0.00 0.00 1.82
854 926 0.035820 TAGGGTCGCGGCAGAAATTT 60.036 50.000 14.93 0.00 0.00 1.82
855 927 0.035820 AGGGTCGCGGCAGAAATTTA 60.036 50.000 14.93 0.00 0.00 1.40
856 928 0.806241 GGGTCGCGGCAGAAATTTAA 59.194 50.000 14.93 0.00 0.00 1.52
857 929 1.466866 GGGTCGCGGCAGAAATTTAAC 60.467 52.381 14.93 0.00 0.00 2.01
858 930 1.466866 GGTCGCGGCAGAAATTTAACC 60.467 52.381 14.93 0.41 0.00 2.85
859 931 0.444651 TCGCGGCAGAAATTTAACCG 59.555 50.000 17.30 17.30 46.50 4.44
861 933 3.322526 CGGCAGAAATTTAACCGCC 57.677 52.632 11.63 10.15 37.05 6.13
862 934 0.179148 CGGCAGAAATTTAACCGCCC 60.179 55.000 11.63 0.00 37.05 6.13
863 935 0.174845 GGCAGAAATTTAACCGCCCC 59.825 55.000 7.93 0.00 33.31 5.80
864 936 1.182667 GCAGAAATTTAACCGCCCCT 58.817 50.000 0.00 0.00 0.00 4.79
865 937 1.135112 GCAGAAATTTAACCGCCCCTG 60.135 52.381 0.00 0.00 0.00 4.45
866 938 1.135112 CAGAAATTTAACCGCCCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
889 961 5.789710 GATAACTCGAAATCCACGGAAAA 57.210 39.130 0.00 0.00 0.00 2.29
890 962 6.173191 GATAACTCGAAATCCACGGAAAAA 57.827 37.500 0.00 0.00 0.00 1.94
891 963 6.753107 ATAACTCGAAATCCACGGAAAAAT 57.247 33.333 0.00 0.00 0.00 1.82
892 964 4.680171 ACTCGAAATCCACGGAAAAATC 57.320 40.909 0.00 0.00 0.00 2.17
893 965 3.124636 ACTCGAAATCCACGGAAAAATCG 59.875 43.478 0.00 0.00 0.00 3.34
894 966 2.159626 TCGAAATCCACGGAAAAATCGC 60.160 45.455 0.00 0.00 0.00 4.58
895 967 2.413502 CGAAATCCACGGAAAAATCGCA 60.414 45.455 0.00 0.00 0.00 5.10
896 968 3.570559 GAAATCCACGGAAAAATCGCAA 58.429 40.909 0.00 0.00 0.00 4.85
897 969 3.866883 AATCCACGGAAAAATCGCAAT 57.133 38.095 0.00 0.00 0.00 3.56
898 970 2.627863 TCCACGGAAAAATCGCAATG 57.372 45.000 0.00 0.00 0.00 2.82
899 971 0.991344 CCACGGAAAAATCGCAATGC 59.009 50.000 0.00 0.00 0.00 3.56
900 972 1.668337 CCACGGAAAAATCGCAATGCA 60.668 47.619 5.91 0.00 0.00 3.96
901 973 2.057316 CACGGAAAAATCGCAATGCAA 58.943 42.857 5.91 0.00 0.00 4.08
989 1070 0.032130 CGTCTATCCACCCACATCCG 59.968 60.000 0.00 0.00 0.00 4.18
1034 1117 0.880278 GAGACAGAGCGCAACACCAA 60.880 55.000 11.47 0.00 0.00 3.67
1057 1140 3.384532 GCCCGTTCCGTACCCTGA 61.385 66.667 0.00 0.00 0.00 3.86
1173 1271 1.238625 CGCCCCGCCTTGAGTTTTTA 61.239 55.000 0.00 0.00 0.00 1.52
1281 1402 5.481473 AGAGGAATCTGCCTTGCAATTTTTA 59.519 36.000 0.00 0.00 38.41 1.52
1424 1556 6.337356 TGATGTTAGAGCATGTCATCGTTTA 58.663 36.000 0.00 0.00 38.06 2.01
1436 1568 3.684788 GTCATCGTTTATGTGCTCTGGTT 59.315 43.478 0.00 0.00 36.89 3.67
1485 1617 4.380233 GCTTACGACTGTATGTAGGTGTGT 60.380 45.833 0.00 0.00 0.00 3.72
1663 1805 8.410673 TGTTACAAAATAAATCCAGTAAGCCA 57.589 30.769 0.00 0.00 0.00 4.75
1892 2034 1.066303 CAGACTCGGATACAGGTGAGC 59.934 57.143 0.00 0.00 31.64 4.26
1894 2036 1.299468 CTCGGATACAGGTGAGCGC 60.299 63.158 0.00 0.00 0.00 5.92
1934 2101 1.126079 CGCCGCAACTACTAATACCG 58.874 55.000 0.00 0.00 0.00 4.02
1956 2123 5.749109 CCGGACAATTGTCTAGATTACAGTC 59.251 44.000 31.81 13.81 44.20 3.51
1993 2160 4.725556 TCTAACATCGTTTCACTGTTGC 57.274 40.909 0.00 0.00 35.00 4.17
2003 2170 2.936919 TCACTGTTGCTTCCACTGAT 57.063 45.000 0.00 0.00 0.00 2.90
2015 2182 6.653020 TGCTTCCACTGATAACTGATACATT 58.347 36.000 0.00 0.00 0.00 2.71
2152 2322 3.906720 TGCTGAGGTACCTTAATGACC 57.093 47.619 17.53 1.29 0.00 4.02
2386 2556 9.487790 ACTTTTAACATGTACATTTTCCCAATG 57.512 29.630 10.44 7.63 0.00 2.82
2393 2563 8.811017 ACATGTACATTTTCCCAATGTAATCAA 58.189 29.630 5.37 0.00 42.63 2.57
2415 2585 1.999648 TGCTCTGGTGCTCCATTTTT 58.000 45.000 8.18 0.00 43.43 1.94
2416 2586 1.888512 TGCTCTGGTGCTCCATTTTTC 59.111 47.619 8.18 0.00 43.43 2.29
2417 2587 2.165998 GCTCTGGTGCTCCATTTTTCT 58.834 47.619 8.18 0.00 43.43 2.52
2418 2588 2.560105 GCTCTGGTGCTCCATTTTTCTT 59.440 45.455 8.18 0.00 43.43 2.52
2419 2589 3.758554 GCTCTGGTGCTCCATTTTTCTTA 59.241 43.478 8.18 0.00 43.43 2.10
2420 2590 4.400567 GCTCTGGTGCTCCATTTTTCTTAT 59.599 41.667 8.18 0.00 43.43 1.73
2466 2636 4.101741 TGGTAAGGGAAAATTTGTTGTGGG 59.898 41.667 0.00 0.00 0.00 4.61
2468 2638 5.012664 GGTAAGGGAAAATTTGTTGTGGGAT 59.987 40.000 0.00 0.00 0.00 3.85
2500 2670 2.084546 GGTTCGTTTGGCAGATAGCTT 58.915 47.619 0.00 0.00 44.79 3.74
2508 2678 5.220605 CGTTTGGCAGATAGCTTACCTTTAC 60.221 44.000 0.00 0.00 44.79 2.01
2588 2758 0.870393 CTGAGCTGCGTGACACAATT 59.130 50.000 6.37 0.00 0.00 2.32
2605 2775 8.318412 TGACACAATTTCTAAGCTTGAGGTATA 58.682 33.333 9.86 0.00 0.00 1.47
2614 2784 7.103641 TCTAAGCTTGAGGTATACCAAAACTG 58.896 38.462 23.87 9.45 38.89 3.16
2620 2790 4.595781 TGAGGTATACCAAAACTGAGGTGT 59.404 41.667 23.87 0.00 38.87 4.16
2632 2802 2.300152 ACTGAGGTGTACCAGTCATGTG 59.700 50.000 3.56 0.00 39.19 3.21
2689 2859 0.908198 AGGGTGATTCTCTGGCACTC 59.092 55.000 0.00 0.00 33.26 3.51
2779 2949 8.134895 CACAAAGTACATGGTGAGTAATTTTGT 58.865 33.333 0.00 0.00 37.57 2.83
2790 2960 7.040755 TGGTGAGTAATTTTGTACCATCTGTTG 60.041 37.037 0.00 0.00 33.60 3.33
2796 2966 7.769272 AATTTTGTACCATCTGTTGTTGTTG 57.231 32.000 0.00 0.00 0.00 3.33
2816 2986 3.359033 TGAAAGCTCTGGCATGCTAAAT 58.641 40.909 18.92 5.67 38.75 1.40
2820 2990 2.019249 GCTCTGGCATGCTAAATGACA 58.981 47.619 18.92 3.92 38.54 3.58
2824 2994 2.019249 TGGCATGCTAAATGACAGCTC 58.981 47.619 18.92 0.00 39.83 4.09
2836 3006 8.786898 GCTAAATGACAGCTCATAATTCCATTA 58.213 33.333 0.00 0.00 35.96 1.90
2891 3061 8.917414 AACTGGTAGGGACATATATGTGATAT 57.083 34.615 22.93 8.54 41.95 1.63
3000 3174 9.809096 TTTTTGTCAGCAATAGTTTGTCAATTA 57.191 25.926 0.00 0.00 35.17 1.40
3033 3207 4.973168 TCAAGTTTGCATTCCTACAGTCT 58.027 39.130 0.00 0.00 0.00 3.24
3035 3209 3.679389 AGTTTGCATTCCTACAGTCTGG 58.321 45.455 4.53 0.00 0.00 3.86
3037 3211 0.911769 TGCATTCCTACAGTCTGGGG 59.088 55.000 4.53 6.31 0.00 4.96
3051 3225 0.038744 CTGGGGCTGAACTGAACCAT 59.961 55.000 0.00 0.00 0.00 3.55
3061 3235 6.145535 GCTGAACTGAACCATTGAAAGTAAG 58.854 40.000 0.00 0.00 0.00 2.34
3077 3251 8.166422 TGAAAGTAAGCATATGTATCTCTCGA 57.834 34.615 4.29 0.00 0.00 4.04
3083 3257 6.375945 AGCATATGTATCTCTCGATGCTAG 57.624 41.667 4.29 0.00 46.07 3.42
3094 3268 1.134367 TCGATGCTAGTGTAGGTGTGC 59.866 52.381 0.00 0.00 0.00 4.57
3097 3271 1.221021 GCTAGTGTAGGTGTGCCCC 59.779 63.158 0.00 0.00 34.57 5.80
3146 3320 9.654663 GTAGTATATGGTTTGAAAGAGTTGAGT 57.345 33.333 0.00 0.00 0.00 3.41
3148 3322 9.574516 AGTATATGGTTTGAAAGAGTTGAGTTT 57.425 29.630 0.00 0.00 0.00 2.66
3191 3367 6.357579 TCATTTGTTTGTCATTGGGCTTAT 57.642 33.333 0.00 0.00 0.00 1.73
3223 3399 3.317603 TCAGCACTCACGATTCATTCA 57.682 42.857 0.00 0.00 0.00 2.57
3224 3400 2.995939 TCAGCACTCACGATTCATTCAC 59.004 45.455 0.00 0.00 0.00 3.18
3225 3401 2.094894 CAGCACTCACGATTCATTCACC 59.905 50.000 0.00 0.00 0.00 4.02
3226 3402 2.027745 AGCACTCACGATTCATTCACCT 60.028 45.455 0.00 0.00 0.00 4.00
3343 3519 0.734889 CATGGATGGAGACGGCAAAC 59.265 55.000 0.00 0.00 0.00 2.93
3364 3540 5.340439 ACGTGGAGAAGTTATCTAAAGGG 57.660 43.478 0.00 0.00 38.96 3.95
3401 3577 5.484173 TTATCAAGTAAATGCTGCTTCCG 57.516 39.130 0.00 0.00 0.00 4.30
3447 3624 5.239306 CACAGTTCCAAGCAAATCTCAGTTA 59.761 40.000 0.00 0.00 0.00 2.24
3448 3625 5.827797 ACAGTTCCAAGCAAATCTCAGTTAA 59.172 36.000 0.00 0.00 0.00 2.01
3522 3701 8.989980 ACTTTAGAGTTTAGATTGTGTTACAGC 58.010 33.333 0.00 0.00 29.87 4.40
3523 3702 8.896320 TTTAGAGTTTAGATTGTGTTACAGCA 57.104 30.769 0.00 0.00 0.00 4.41
3524 3703 9.502091 TTTAGAGTTTAGATTGTGTTACAGCAT 57.498 29.630 0.00 0.00 0.00 3.79
3525 3704 7.369803 AGAGTTTAGATTGTGTTACAGCATG 57.630 36.000 0.00 0.00 46.00 4.06
3527 3706 6.237901 AGTTTAGATTGTGTTACAGCATGGA 58.762 36.000 0.00 0.00 43.62 3.41
3528 3707 6.886459 AGTTTAGATTGTGTTACAGCATGGAT 59.114 34.615 0.00 0.00 43.62 3.41
3529 3708 6.682423 TTAGATTGTGTTACAGCATGGATG 57.318 37.500 0.00 0.00 43.62 3.51
3531 3710 5.012239 AGATTGTGTTACAGCATGGATGTT 58.988 37.500 0.00 0.00 43.62 2.71
3532 3711 6.179756 AGATTGTGTTACAGCATGGATGTTA 58.820 36.000 0.00 0.00 43.62 2.41
3533 3712 5.621197 TTGTGTTACAGCATGGATGTTAC 57.379 39.130 0.00 0.00 43.62 2.50
3573 3752 8.361889 CAACCATTGATATATGATTCTGGCAAA 58.638 33.333 0.00 0.00 0.00 3.68
3576 3755 7.395206 CCATTGATATATGATTCTGGCAAAGGA 59.605 37.037 0.00 0.00 0.00 3.36
3592 3771 5.880332 GGCAAAGGATAACTTAGTGACATGA 59.120 40.000 0.00 0.00 38.85 3.07
3594 3773 7.412853 GCAAAGGATAACTTAGTGACATGATG 58.587 38.462 0.00 0.00 38.85 3.07
3596 3775 5.292765 AGGATAACTTAGTGACATGATGCG 58.707 41.667 0.00 0.00 0.00 4.73
3601 3780 4.569943 ACTTAGTGACATGATGCGTCTTT 58.430 39.130 7.58 0.00 34.37 2.52
3646 3825 1.177401 GTTGGCCCAAAGTCCTGATC 58.823 55.000 0.00 0.00 0.00 2.92
3652 3831 3.696548 GGCCCAAAGTCCTGATCTTAAAG 59.303 47.826 0.00 0.00 0.00 1.85
3656 3835 4.952335 CCAAAGTCCTGATCTTAAAGCCAT 59.048 41.667 0.00 0.00 0.00 4.40
3699 3878 4.268359 AGTCCTGAAATTGCTGAGAATCC 58.732 43.478 0.00 0.00 0.00 3.01
3730 3909 4.240096 GCTGTGATGGGAACTTTCATTTG 58.760 43.478 0.00 0.00 0.00 2.32
3732 3911 5.048083 GCTGTGATGGGAACTTTCATTTGTA 60.048 40.000 0.00 0.00 0.00 2.41
3774 3955 6.575267 AGCTAGCTCATCATAGCAATATCTG 58.425 40.000 12.68 0.00 45.54 2.90
3776 3957 6.256104 GCTAGCTCATCATAGCAATATCTGTG 59.744 42.308 7.70 0.00 45.30 3.66
3799 3983 7.676893 TGTGTATCCTTCTTACTTTCCTCCTTA 59.323 37.037 0.00 0.00 0.00 2.69
3813 3997 8.275040 ACTTTCCTCCTTACAATATAGCACATT 58.725 33.333 0.00 0.00 0.00 2.71
3822 4006 9.884465 CTTACAATATAGCACATTAAGGCTTTC 57.116 33.333 4.45 0.00 41.41 2.62
3830 4014 6.044682 AGCACATTAAGGCTTTCAATTATGC 58.955 36.000 4.45 11.84 36.92 3.14
3847 4032 6.989155 ATTATGCATTGAGGTGATGGAAAT 57.011 33.333 3.54 0.00 0.00 2.17
3848 4033 8.361889 CAATTATGCATTGAGGTGATGGAAATA 58.638 33.333 3.54 0.00 44.78 1.40
3849 4034 7.514784 TTATGCATTGAGGTGATGGAAATAG 57.485 36.000 3.54 0.00 0.00 1.73
3851 4036 3.005155 GCATTGAGGTGATGGAAATAGGC 59.995 47.826 0.00 0.00 0.00 3.93
3852 4037 3.297134 TTGAGGTGATGGAAATAGGCC 57.703 47.619 0.00 0.00 0.00 5.19
3853 4038 1.494721 TGAGGTGATGGAAATAGGCCC 59.505 52.381 0.00 0.00 0.00 5.80
3854 4039 0.853530 AGGTGATGGAAATAGGCCCC 59.146 55.000 0.00 0.00 0.00 5.80
3855 4040 0.853530 GGTGATGGAAATAGGCCCCT 59.146 55.000 0.00 0.00 0.00 4.79
3862 4047 1.701390 AAATAGGCCCCTCCCCCTG 60.701 63.158 0.00 0.00 34.51 4.45
3863 4048 4.928520 ATAGGCCCCTCCCCCTGC 62.929 72.222 0.00 0.00 34.51 4.85
3901 4086 9.408648 CAATGTAATAAGTAGGAACCCAAATCT 57.591 33.333 0.00 0.00 0.00 2.40
3903 4088 6.826741 TGTAATAAGTAGGAACCCAAATCTGC 59.173 38.462 0.00 0.00 0.00 4.26
3909 4094 1.463674 GAACCCAAATCTGCGTCCAT 58.536 50.000 0.00 0.00 0.00 3.41
3928 4113 3.308402 CCATGAGGACATAAACCAGGTGT 60.308 47.826 0.00 0.00 36.89 4.16
3931 4116 3.392947 TGAGGACATAAACCAGGTGTTGA 59.607 43.478 0.00 0.00 37.23 3.18
3939 4124 7.175104 ACATAAACCAGGTGTTGAGATTGTAT 58.825 34.615 0.00 0.00 37.23 2.29
3940 4125 5.964958 AAACCAGGTGTTGAGATTGTATG 57.035 39.130 0.00 0.00 37.23 2.39
3998 4185 7.067859 CCTGAGGTGATGATATTCACAATTGTT 59.932 37.037 8.77 0.00 46.32 2.83
4001 4188 7.993101 AGGTGATGATATTCACAATTGTTCTG 58.007 34.615 8.77 0.00 46.32 3.02
4078 4266 5.490139 AATGTGTGAACACTGTTTCTCTG 57.510 39.130 14.28 0.00 46.55 3.35
4087 4275 5.808366 ACACTGTTTCTCTGTGGAATCTA 57.192 39.130 9.01 0.00 45.87 1.98
4105 4293 4.736126 TCTAGATTGGCATCTTCGTTGA 57.264 40.909 5.07 0.00 40.53 3.18
4109 4297 4.074970 AGATTGGCATCTTCGTTGAACTT 58.925 39.130 0.00 0.00 36.18 2.66
4117 4305 5.340667 GCATCTTCGTTGAACTTTGCTTTAG 59.659 40.000 0.00 0.00 0.00 1.85
4131 4319 2.489329 TGCTTTAGCTTCAGCATGGTTC 59.511 45.455 14.00 0.00 41.20 3.62
4165 4354 6.777526 TTGTGTGCAATTTAATTTACAGGC 57.222 33.333 0.00 0.00 0.00 4.85
4235 4427 6.563422 TGATGCTGTGGTATTGCTATTTTTC 58.437 36.000 0.00 0.00 0.00 2.29
4244 4436 5.105351 GGTATTGCTATTTTTCCAGGTGCTT 60.105 40.000 0.00 0.00 0.00 3.91
4254 4446 2.778299 TCCAGGTGCTTGTTGATGTAC 58.222 47.619 0.00 0.00 0.00 2.90
4262 4454 3.189080 TGCTTGTTGATGTACATGCTGAC 59.811 43.478 14.43 6.79 44.78 3.51
4288 4480 5.824624 CAGAACTCCTTGTTGCATATGGTAT 59.175 40.000 4.56 0.00 39.30 2.73
4311 4503 8.983724 GTATTATTCTCTTCTTTTCCTGATCCG 58.016 37.037 0.00 0.00 0.00 4.18
4365 4559 1.000052 CAGTGAACACAATGCATGCCA 60.000 47.619 16.68 3.52 0.00 4.92
4375 4569 0.177141 ATGCATGCCATTTCTGTGCC 59.823 50.000 16.68 0.00 35.03 5.01
4382 4576 1.180029 CCATTTCTGTGCCCTTCAGG 58.820 55.000 0.00 0.00 39.47 3.86
4398 4592 3.266510 TCAGGTACCATGTGCTGAATC 57.733 47.619 15.94 0.00 0.00 2.52
4401 4595 3.314357 CAGGTACCATGTGCTGAATCATG 59.686 47.826 15.94 0.00 40.46 3.07
4409 4603 5.466819 CATGTGCTGAATCATGTTTGTTCT 58.533 37.500 0.00 0.00 37.31 3.01
4412 4607 6.437928 TGTGCTGAATCATGTTTGTTCTAAC 58.562 36.000 0.00 0.00 0.00 2.34
4416 4611 8.845227 TGCTGAATCATGTTTGTTCTAACTTTA 58.155 29.630 0.00 0.00 0.00 1.85
4442 4637 9.482627 AGTTTCTGCTATGCTATAACTCATAAC 57.517 33.333 0.00 0.00 0.00 1.89
4444 4640 8.818141 TTCTGCTATGCTATAACTCATAACAC 57.182 34.615 0.00 0.00 0.00 3.32
4446 4642 8.642432 TCTGCTATGCTATAACTCATAACACTT 58.358 33.333 0.00 0.00 0.00 3.16
4450 4646 9.764363 CTATGCTATAACTCATAACACTTCCAA 57.236 33.333 0.00 0.00 0.00 3.53
4495 4691 8.589701 TCAGTATTTCACTATGTCTCCTTACA 57.410 34.615 0.00 0.00 34.98 2.41
4497 4693 8.470805 CAGTATTTCACTATGTCTCCTTACACT 58.529 37.037 0.00 0.00 34.98 3.55
4521 4723 3.780804 TTTTGTCGAGAATGAAGGGGA 57.219 42.857 0.00 0.00 0.00 4.81
4525 4727 3.408634 TGTCGAGAATGAAGGGGAAAAC 58.591 45.455 0.00 0.00 0.00 2.43
4555 4757 3.388024 AGTTCTAATATCCGAAGCCAGCA 59.612 43.478 0.00 0.00 0.00 4.41
4573 4775 4.456911 CCAGCATACAGTTCATCAACAGTT 59.543 41.667 0.00 0.00 34.34 3.16
4583 4785 9.139174 ACAGTTCATCAACAGTTTTTAAAACAG 57.861 29.630 20.62 15.64 34.60 3.16
4604 4807 4.860907 CAGCCGAAATGAAAAGAAATCAGG 59.139 41.667 0.00 0.00 0.00 3.86
4606 4809 5.098211 GCCGAAATGAAAAGAAATCAGGAG 58.902 41.667 0.00 0.00 0.00 3.69
4636 4839 3.178865 TCCCTTGTACCTACCCTGAAAG 58.821 50.000 0.00 0.00 0.00 2.62
4644 4847 5.424252 TGTACCTACCCTGAAAGAATGTAGG 59.576 44.000 11.44 11.44 34.07 3.18
4649 4852 2.874701 CCCTGAAAGAATGTAGGATGCG 59.125 50.000 0.00 0.00 34.07 4.73
4654 4857 1.888215 AGAATGTAGGATGCGGCATG 58.112 50.000 21.98 0.00 0.00 4.06
4676 4879 7.222999 GCATGTTCTCCAGTCTGTTTACTATAC 59.777 40.741 0.00 0.00 0.00 1.47
4689 4892 9.894783 TCTGTTTACTATACATAATCTTCGCTC 57.105 33.333 0.00 0.00 0.00 5.03
4711 4914 1.723870 GAACATGGATCGGCTGTGC 59.276 57.895 0.00 0.00 0.00 4.57
4725 4928 0.041839 CTGTGCGTTGACTGTTCTGC 60.042 55.000 0.00 0.00 0.00 4.26
4816 5019 9.461312 AAGATGTGGAACTTTAATAAGCATACA 57.539 29.630 0.00 0.00 38.04 2.29
4857 5060 5.666969 TGTACAACACAACAAGATAGCAC 57.333 39.130 0.00 0.00 32.95 4.40
4861 5064 2.494059 ACACAACAAGATAGCACGCTT 58.506 42.857 0.00 0.00 0.00 4.68
4865 5068 5.008217 ACACAACAAGATAGCACGCTTTTTA 59.992 36.000 0.00 0.00 0.00 1.52
4959 5167 5.300752 TCAGTCGCAGAAGAAAATCTTTCT 58.699 37.500 0.00 0.00 39.69 2.52
5017 5225 1.804746 CGTTTGCTTGGTTGTTTCCCC 60.805 52.381 0.00 0.00 0.00 4.81
5018 5226 0.833949 TTTGCTTGGTTGTTTCCCCC 59.166 50.000 0.00 0.00 0.00 5.40
5052 5260 7.961351 ACCAAAGTGAATTATTGATGTTTCCA 58.039 30.769 0.00 0.00 0.00 3.53
5171 5379 1.204941 GAGAAGTATGACCAGCCACGT 59.795 52.381 0.00 0.00 0.00 4.49
5206 5414 4.112634 GGAGATGAAAATGACGACGATGA 58.887 43.478 0.00 0.00 0.00 2.92
5304 5512 8.695456 TCTTCTTTTTGCAAGGAAAATAGACTT 58.305 29.630 0.00 0.00 28.21 3.01
5461 5669 2.163815 AGGTGTAATGAAGACCGAGTCG 59.836 50.000 5.29 5.29 46.32 4.18
5492 5700 7.148423 GGATATTGCAAGAAATCACAAAAACCC 60.148 37.037 4.94 0.00 0.00 4.11
5498 5706 4.306600 AGAAATCACAAAAACCCGCAATC 58.693 39.130 0.00 0.00 0.00 2.67
5685 5893 2.262774 CTGTCCCCTCTGATGGGCAC 62.263 65.000 12.73 11.76 45.78 5.01
5697 5905 1.800586 GATGGGCACATGTACATAGCG 59.199 52.381 5.94 7.92 37.47 4.26
5700 5908 3.806257 GCACATGTACATAGCGTGC 57.194 52.632 25.14 25.14 45.25 5.34
5780 5988 5.561532 GCTTCACGTACAGTACAGTACAGAA 60.562 44.000 23.35 22.25 43.49 3.02
5786 5994 4.602340 ACAGTACAGTACAGAAGTTGGG 57.398 45.455 13.37 0.00 0.00 4.12
5905 6121 1.336887 ACGGATCACCAAGACGAACAG 60.337 52.381 0.00 0.00 35.59 3.16
5906 6122 1.336887 CGGATCACCAAGACGAACAGT 60.337 52.381 0.00 0.00 35.59 3.55
5907 6123 2.338500 GGATCACCAAGACGAACAGTC 58.662 52.381 0.00 0.00 42.05 3.51
5908 6124 3.238124 GGATCACCAAGACGAACAGTCG 61.238 54.545 0.00 0.00 44.30 4.18
6034 6352 3.498481 CCTCCAACTGATCCCAAAAGTCA 60.498 47.826 0.00 0.00 0.00 3.41
6113 6431 1.477685 TTCACCCTTCGACACCCTCC 61.478 60.000 0.00 0.00 0.00 4.30
6116 6434 1.003718 CCCTTCGACACCCTCCAAC 60.004 63.158 0.00 0.00 0.00 3.77
6118 6436 1.263356 CCTTCGACACCCTCCAACTA 58.737 55.000 0.00 0.00 0.00 2.24
6156 6474 0.394565 GCAGACATGGTAGGCTAGGG 59.605 60.000 0.00 0.00 0.00 3.53
6273 6591 1.135460 GCTTGAGCTTGTCTTGCATCC 60.135 52.381 0.00 0.00 38.21 3.51
6382 6704 1.561643 TCTCCTTCATCTTGTCCGCT 58.438 50.000 0.00 0.00 0.00 5.52
6425 6747 1.993301 CCTTTACCCACTTCCTCCCTT 59.007 52.381 0.00 0.00 0.00 3.95
6427 6749 3.200165 CCTTTACCCACTTCCTCCCTTAG 59.800 52.174 0.00 0.00 0.00 2.18
6449 6771 2.467880 TCCTAATCACCTTCTTCGCCT 58.532 47.619 0.00 0.00 0.00 5.52
6517 6840 1.741770 ATTGAGCACGGCGGTCTTC 60.742 57.895 13.24 3.87 42.88 2.87
6667 6990 3.713826 AACATACCAAGGTTCGTCCAT 57.286 42.857 0.00 0.00 39.02 3.41
6671 6994 2.596904 ACCAAGGTTCGTCCATATCG 57.403 50.000 2.77 0.00 39.02 2.92
6707 7030 7.341256 AGGAGTTTTACTCGTACATAGGAATGA 59.659 37.037 0.57 0.00 45.96 2.57
6709 7032 6.971184 AGTTTTACTCGTACATAGGAATGACG 59.029 38.462 0.00 0.00 37.67 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.973632 TCACCATAACCACGAGCACT 59.026 50.000 0.00 0.00 0.00 4.40
32 33 1.213296 GCCCCTCCTCTTCACCATAA 58.787 55.000 0.00 0.00 0.00 1.90
174 175 1.818522 CGCCTACCTCGACTTCCCTAT 60.819 57.143 0.00 0.00 0.00 2.57
206 210 1.164411 CACGCACAAGCAATTCCCTA 58.836 50.000 0.00 0.00 42.27 3.53
237 248 6.460261 GCTTGCTATGTCTTTTTAAGGGGATC 60.460 42.308 0.00 0.00 0.00 3.36
239 250 4.705023 GCTTGCTATGTCTTTTTAAGGGGA 59.295 41.667 0.00 0.00 0.00 4.81
243 264 5.545658 TCCGCTTGCTATGTCTTTTTAAG 57.454 39.130 0.00 0.00 0.00 1.85
286 307 4.682787 TCAATGTCATCAGTCGTATCCAC 58.317 43.478 0.00 0.00 0.00 4.02
296 317 8.667076 TCACCACTATTTATCAATGTCATCAG 57.333 34.615 0.00 0.00 0.00 2.90
304 325 7.417797 GGCCAACATTCACCACTATTTATCAAT 60.418 37.037 0.00 0.00 0.00 2.57
457 481 2.841215 TGTTTCCTTCCGAATCACGTT 58.159 42.857 0.00 0.00 40.78 3.99
555 579 7.773864 TTCCATACTGACGCGAATTATTTAA 57.226 32.000 15.93 0.00 0.00 1.52
565 589 2.345641 CAGAACTTTCCATACTGACGCG 59.654 50.000 3.53 3.53 0.00 6.01
605 631 0.320771 GCGTCACCCTCTCACACAAT 60.321 55.000 0.00 0.00 0.00 2.71
677 730 2.961526 TTGTCCCATCTTCGCTAGTC 57.038 50.000 0.00 0.00 0.00 2.59
769 841 4.635765 CCTTGCCTTCAGTTCGATTATCAA 59.364 41.667 0.00 0.00 0.00 2.57
770 842 4.191544 CCTTGCCTTCAGTTCGATTATCA 58.808 43.478 0.00 0.00 0.00 2.15
771 843 4.192317 ACCTTGCCTTCAGTTCGATTATC 58.808 43.478 0.00 0.00 0.00 1.75
772 844 4.222124 ACCTTGCCTTCAGTTCGATTAT 57.778 40.909 0.00 0.00 0.00 1.28
773 845 3.695830 ACCTTGCCTTCAGTTCGATTA 57.304 42.857 0.00 0.00 0.00 1.75
774 846 2.568623 ACCTTGCCTTCAGTTCGATT 57.431 45.000 0.00 0.00 0.00 3.34
775 847 3.335579 GTTACCTTGCCTTCAGTTCGAT 58.664 45.455 0.00 0.00 0.00 3.59
776 848 2.549349 GGTTACCTTGCCTTCAGTTCGA 60.549 50.000 0.00 0.00 0.00 3.71
777 849 1.804748 GGTTACCTTGCCTTCAGTTCG 59.195 52.381 0.00 0.00 0.00 3.95
778 850 2.858745 TGGTTACCTTGCCTTCAGTTC 58.141 47.619 2.07 0.00 0.00 3.01
779 851 3.525800 ATGGTTACCTTGCCTTCAGTT 57.474 42.857 2.07 0.00 0.00 3.16
780 852 3.054361 CCTATGGTTACCTTGCCTTCAGT 60.054 47.826 2.07 0.00 0.00 3.41
781 853 3.545703 CCTATGGTTACCTTGCCTTCAG 58.454 50.000 2.07 0.00 0.00 3.02
782 854 2.241176 CCCTATGGTTACCTTGCCTTCA 59.759 50.000 2.07 0.00 0.00 3.02
783 855 2.241430 ACCCTATGGTTACCTTGCCTTC 59.759 50.000 2.07 0.00 44.75 3.46
784 856 2.284770 ACCCTATGGTTACCTTGCCTT 58.715 47.619 2.07 0.00 44.75 4.35
785 857 1.981259 ACCCTATGGTTACCTTGCCT 58.019 50.000 2.07 0.00 44.75 4.75
796 868 2.254546 TTTGCGCATAGACCCTATGG 57.745 50.000 12.75 6.96 37.80 2.74
797 869 3.376859 TGTTTTTGCGCATAGACCCTATG 59.623 43.478 12.75 9.06 0.00 2.23
798 870 3.616219 TGTTTTTGCGCATAGACCCTAT 58.384 40.909 12.75 0.00 0.00 2.57
799 871 3.060736 TGTTTTTGCGCATAGACCCTA 57.939 42.857 12.75 0.00 0.00 3.53
800 872 1.904287 TGTTTTTGCGCATAGACCCT 58.096 45.000 12.75 0.00 0.00 4.34
801 873 2.715737 TTGTTTTTGCGCATAGACCC 57.284 45.000 12.75 0.00 0.00 4.46
832 904 2.587322 TTTCTGCCGCGACCCTATGG 62.587 60.000 8.23 0.00 37.80 2.74
833 905 0.532862 ATTTCTGCCGCGACCCTATG 60.533 55.000 8.23 0.00 0.00 2.23
834 906 0.180406 AATTTCTGCCGCGACCCTAT 59.820 50.000 8.23 0.00 0.00 2.57
835 907 0.035820 AAATTTCTGCCGCGACCCTA 60.036 50.000 8.23 0.00 0.00 3.53
836 908 0.035820 TAAATTTCTGCCGCGACCCT 60.036 50.000 8.23 0.00 0.00 4.34
837 909 0.806241 TTAAATTTCTGCCGCGACCC 59.194 50.000 8.23 0.00 0.00 4.46
838 910 1.466866 GGTTAAATTTCTGCCGCGACC 60.467 52.381 8.23 0.00 0.00 4.79
839 911 1.789054 CGGTTAAATTTCTGCCGCGAC 60.789 52.381 8.23 0.00 35.90 5.19
840 912 0.444651 CGGTTAAATTTCTGCCGCGA 59.555 50.000 8.23 0.00 35.90 5.87
841 913 2.924713 CGGTTAAATTTCTGCCGCG 58.075 52.632 12.74 0.00 35.90 6.46
843 915 3.322526 GGCGGTTAAATTTCTGCCG 57.677 52.632 17.99 17.99 44.49 5.69
845 917 1.135112 CAGGGGCGGTTAAATTTCTGC 60.135 52.381 0.00 0.00 35.47 4.26
846 918 1.135112 GCAGGGGCGGTTAAATTTCTG 60.135 52.381 0.00 0.00 0.00 3.02
847 919 1.182667 GCAGGGGCGGTTAAATTTCT 58.817 50.000 0.00 0.00 0.00 2.52
848 920 3.733236 GCAGGGGCGGTTAAATTTC 57.267 52.632 0.00 0.00 0.00 2.17
867 939 5.789710 TTTTCCGTGGATTTCGAGTTATC 57.210 39.130 0.00 0.00 0.00 1.75
868 940 6.456449 CGATTTTTCCGTGGATTTCGAGTTAT 60.456 38.462 0.00 0.00 0.00 1.89
869 941 5.163933 CGATTTTTCCGTGGATTTCGAGTTA 60.164 40.000 0.00 0.00 0.00 2.24
870 942 4.378046 CGATTTTTCCGTGGATTTCGAGTT 60.378 41.667 0.00 0.00 0.00 3.01
871 943 3.124636 CGATTTTTCCGTGGATTTCGAGT 59.875 43.478 0.00 0.00 0.00 4.18
872 944 3.670203 CGATTTTTCCGTGGATTTCGAG 58.330 45.455 0.00 0.00 0.00 4.04
873 945 2.159626 GCGATTTTTCCGTGGATTTCGA 60.160 45.455 11.83 0.00 0.00 3.71
874 946 2.173964 GCGATTTTTCCGTGGATTTCG 58.826 47.619 0.00 0.00 0.00 3.46
875 947 3.210358 TGCGATTTTTCCGTGGATTTC 57.790 42.857 0.00 0.00 0.00 2.17
876 948 3.651803 TTGCGATTTTTCCGTGGATTT 57.348 38.095 0.00 0.00 0.00 2.17
877 949 3.510719 CATTGCGATTTTTCCGTGGATT 58.489 40.909 0.00 0.00 0.00 3.01
878 950 2.735126 GCATTGCGATTTTTCCGTGGAT 60.735 45.455 0.00 0.00 0.00 3.41
879 951 1.402194 GCATTGCGATTTTTCCGTGGA 60.402 47.619 0.00 0.00 0.00 4.02
880 952 0.991344 GCATTGCGATTTTTCCGTGG 59.009 50.000 0.00 0.00 0.00 4.94
881 953 1.695813 TGCATTGCGATTTTTCCGTG 58.304 45.000 3.84 0.00 0.00 4.94
882 954 2.327568 CTTGCATTGCGATTTTTCCGT 58.672 42.857 3.84 0.00 0.00 4.69
883 955 1.059549 GCTTGCATTGCGATTTTTCCG 59.940 47.619 3.84 0.00 0.00 4.30
884 956 2.067766 TGCTTGCATTGCGATTTTTCC 58.932 42.857 3.84 0.00 0.00 3.13
885 957 2.473376 GCTGCTTGCATTGCGATTTTTC 60.473 45.455 3.84 0.00 42.31 2.29
886 958 1.461897 GCTGCTTGCATTGCGATTTTT 59.538 42.857 3.84 0.00 42.31 1.94
887 959 1.073177 GCTGCTTGCATTGCGATTTT 58.927 45.000 3.84 0.00 42.31 1.82
888 960 2.745728 GCTGCTTGCATTGCGATTT 58.254 47.368 3.84 0.00 42.31 2.17
889 961 4.489249 GCTGCTTGCATTGCGATT 57.511 50.000 3.84 0.00 42.31 3.34
962 1034 4.853142 TGGATAGACGGCGCCCCT 62.853 66.667 23.46 20.47 0.00 4.79
1094 1177 2.586792 CTTGGGGGAGAGGAAGCG 59.413 66.667 0.00 0.00 0.00 4.68
1167 1265 2.256158 GGCGGGGCACGTAAAAAC 59.744 61.111 12.27 0.00 46.52 2.43
1198 1316 1.293924 CAGGCGCTCAAGTATCAAGG 58.706 55.000 7.64 0.00 0.00 3.61
1281 1402 4.285863 AGCAGTGCTAGAGATCCTACTTT 58.714 43.478 18.11 0.00 36.99 2.66
1424 1556 2.645838 ACAACTGAACCAGAGCACAT 57.354 45.000 0.45 0.00 35.18 3.21
1436 1568 2.308570 AGTCAATGGGGCATACAACTGA 59.691 45.455 0.00 0.00 0.00 3.41
1485 1617 0.608856 ATCACCACCGCTGCAATCAA 60.609 50.000 0.00 0.00 0.00 2.57
1681 1823 3.660111 GCTTTTCCGCGCACCAGT 61.660 61.111 8.75 0.00 0.00 4.00
1688 1830 1.798725 CATGTGCAGCTTTTCCGCG 60.799 57.895 0.00 0.00 34.40 6.46
1892 2034 1.069227 GTGGTGGTAAAGAAGCAAGCG 60.069 52.381 0.00 0.00 37.33 4.68
1894 2036 2.814336 GAGGTGGTGGTAAAGAAGCAAG 59.186 50.000 0.00 0.00 37.33 4.01
1934 2101 8.688151 AGTAGACTGTAATCTAGACAATTGTCC 58.312 37.037 30.34 16.16 45.85 4.02
1993 2160 8.722480 TTGAATGTATCAGTTATCAGTGGAAG 57.278 34.615 0.00 0.00 39.77 3.46
2176 2346 8.783833 TTTCTTCACAGAGAAATTATCCTCAG 57.216 34.615 0.00 0.00 39.90 3.35
2249 2419 4.174009 TCGATGAACCTCTTTTAGCTTCG 58.826 43.478 0.00 0.00 0.00 3.79
2386 2556 4.453819 GGAGCACCAGAGCATATTGATTAC 59.546 45.833 0.00 0.00 36.85 1.89
2391 2561 2.336945 TGGAGCACCAGAGCATATTG 57.663 50.000 0.00 0.00 41.77 1.90
2420 2590 9.914834 ACCAGATTAGCCTACATGTTAATTAAA 57.085 29.630 2.30 0.00 0.00 1.52
2432 2602 5.625568 TTTCCCTTACCAGATTAGCCTAC 57.374 43.478 0.00 0.00 0.00 3.18
2444 2614 4.345547 TCCCACAACAAATTTTCCCTTACC 59.654 41.667 0.00 0.00 0.00 2.85
2485 2655 5.066117 GGTAAAGGTAAGCTATCTGCCAAAC 59.934 44.000 0.00 0.00 44.23 2.93
2500 2670 4.339814 CACTGCAACAAAAGGGTAAAGGTA 59.660 41.667 0.00 0.00 0.00 3.08
2508 2678 0.746063 TCTGCACTGCAACAAAAGGG 59.254 50.000 4.99 0.00 38.41 3.95
2537 2707 2.880963 AGTTCTCGCTCTCAATAGCC 57.119 50.000 0.00 0.00 39.43 3.93
2588 2758 7.606456 CAGTTTTGGTATACCTCAAGCTTAGAA 59.394 37.037 22.41 1.89 36.82 2.10
2605 2775 2.508300 ACTGGTACACCTCAGTTTTGGT 59.492 45.455 0.00 0.00 40.91 3.67
2614 2784 3.195610 TCATCACATGACTGGTACACCTC 59.804 47.826 0.00 0.00 33.59 3.85
2620 2790 9.898152 TTTAACATAATCATCACATGACTGGTA 57.102 29.630 0.00 0.00 43.01 3.25
2653 2823 5.245531 TCACCCTACATGACATTTGAAGTC 58.754 41.667 0.00 0.00 36.55 3.01
2689 2859 4.232310 GCCAGGGCTTTAGCAGAG 57.768 61.111 2.30 0.00 44.36 3.35
2779 2949 4.887071 AGCTTTCAACAACAACAGATGGTA 59.113 37.500 0.00 0.00 0.00 3.25
2790 2960 2.669364 CATGCCAGAGCTTTCAACAAC 58.331 47.619 0.00 0.00 40.80 3.32
2796 2966 3.379372 TCATTTAGCATGCCAGAGCTTTC 59.621 43.478 15.66 0.00 42.05 2.62
2836 3006 8.958175 TGTCGAACGCATAAGAAATAAAAATT 57.042 26.923 0.00 0.00 0.00 1.82
2840 3010 7.970384 AGAATGTCGAACGCATAAGAAATAAA 58.030 30.769 0.00 0.00 0.00 1.40
2853 3023 4.103357 CCTACCAGTTAGAATGTCGAACG 58.897 47.826 0.00 0.00 37.13 3.95
2858 3028 5.615925 ATGTCCCTACCAGTTAGAATGTC 57.384 43.478 0.00 0.00 0.00 3.06
3000 3174 7.986889 AGGAATGCAAACTTGAACAACTTAAAT 59.013 29.630 0.00 0.00 0.00 1.40
3021 3195 1.207791 CAGCCCCAGACTGTAGGAAT 58.792 55.000 11.95 0.00 0.00 3.01
3033 3207 0.482446 AATGGTTCAGTTCAGCCCCA 59.518 50.000 0.00 0.00 0.00 4.96
3035 3209 1.909700 TCAATGGTTCAGTTCAGCCC 58.090 50.000 0.00 0.00 0.00 5.19
3037 3211 4.574599 ACTTTCAATGGTTCAGTTCAGC 57.425 40.909 0.00 0.00 0.00 4.26
3051 3225 8.630037 TCGAGAGATACATATGCTTACTTTCAA 58.370 33.333 1.58 0.00 33.31 2.69
3075 3249 1.560923 GCACACCTACACTAGCATCG 58.439 55.000 0.00 0.00 0.00 3.84
3077 3251 0.541863 GGGCACACCTACACTAGCAT 59.458 55.000 0.00 0.00 35.85 3.79
3083 3257 2.729028 AATATGGGGCACACCTACAC 57.271 50.000 0.00 0.00 40.03 2.90
3223 3399 9.436957 CAAAATAAACTAGTGTCTCACATAGGT 57.563 33.333 0.00 0.00 36.74 3.08
3224 3400 9.436957 ACAAAATAAACTAGTGTCTCACATAGG 57.563 33.333 0.00 0.00 36.74 2.57
3343 3519 4.120589 GCCCTTTAGATAACTTCTCCACG 58.879 47.826 0.00 0.00 35.79 4.94
3364 3540 8.825667 TTACTTGATAAAAAGGTTGATTTGGC 57.174 30.769 0.00 0.00 0.00 4.52
3393 3569 3.568430 AGGAAAACTTAAACCGGAAGCAG 59.432 43.478 9.46 0.54 0.00 4.24
3401 3577 6.713450 TGTGGATACTGAGGAAAACTTAAACC 59.287 38.462 0.00 0.00 37.61 3.27
3447 3624 6.985117 TCTTGCAGATGCTACAAGAAAAATT 58.015 32.000 6.35 0.00 44.97 1.82
3448 3625 6.579666 TCTTGCAGATGCTACAAGAAAAAT 57.420 33.333 6.35 0.00 44.97 1.82
3497 3676 8.988934 TGCTGTAACACAATCTAAACTCTAAAG 58.011 33.333 0.00 0.00 0.00 1.85
3521 3700 2.290367 TGCGCTAATGTAACATCCATGC 59.710 45.455 9.73 0.00 0.00 4.06
3522 3701 4.550577 TTGCGCTAATGTAACATCCATG 57.449 40.909 9.73 0.00 0.00 3.66
3523 3702 4.821260 TCATTGCGCTAATGTAACATCCAT 59.179 37.500 22.88 0.00 45.17 3.41
3524 3703 4.035091 GTCATTGCGCTAATGTAACATCCA 59.965 41.667 22.88 7.10 45.17 3.41
3525 3704 4.035091 TGTCATTGCGCTAATGTAACATCC 59.965 41.667 22.88 10.47 45.17 3.51
3527 3706 5.331902 GTTGTCATTGCGCTAATGTAACAT 58.668 37.500 25.86 0.00 45.17 2.71
3528 3707 4.378978 GGTTGTCATTGCGCTAATGTAACA 60.379 41.667 28.14 23.00 45.17 2.41
3529 3708 4.095610 GGTTGTCATTGCGCTAATGTAAC 58.904 43.478 24.63 24.63 45.17 2.50
3531 3710 3.339141 TGGTTGTCATTGCGCTAATGTA 58.661 40.909 22.88 14.95 45.17 2.29
3532 3711 2.158559 TGGTTGTCATTGCGCTAATGT 58.841 42.857 22.88 0.00 45.17 2.71
3533 3712 2.917701 TGGTTGTCATTGCGCTAATG 57.082 45.000 19.88 19.88 46.09 1.90
3559 3738 8.494433 ACTAAGTTATCCTTTGCCAGAATCATA 58.506 33.333 0.00 0.00 34.46 2.15
3573 3752 5.163405 ACGCATCATGTCACTAAGTTATCCT 60.163 40.000 0.00 0.00 0.00 3.24
3576 3755 5.907207 AGACGCATCATGTCACTAAGTTAT 58.093 37.500 0.00 0.00 38.83 1.89
3592 3771 6.407202 AGGATAAGTCAAGTAAAAGACGCAT 58.593 36.000 0.00 0.00 39.67 4.73
3594 3773 6.590677 AGAAGGATAAGTCAAGTAAAAGACGC 59.409 38.462 0.00 0.00 39.67 5.19
3596 3775 8.713271 CACAGAAGGATAAGTCAAGTAAAAGAC 58.287 37.037 0.00 0.00 35.02 3.01
3601 3780 5.488341 GCCACAGAAGGATAAGTCAAGTAA 58.512 41.667 0.00 0.00 0.00 2.24
3636 3815 5.441718 TCATGGCTTTAAGATCAGGACTT 57.558 39.130 0.00 0.00 0.00 3.01
3646 3825 6.324819 CAAGGTGTACAATCATGGCTTTAAG 58.675 40.000 0.00 0.00 0.00 1.85
3652 3831 1.818060 TGCAAGGTGTACAATCATGGC 59.182 47.619 0.00 0.00 0.00 4.40
3656 3835 2.924421 TGTGTGCAAGGTGTACAATCA 58.076 42.857 0.00 0.00 44.19 2.57
3699 3878 0.245539 CCCATCACAGCCTTGCAAAG 59.754 55.000 0.00 0.00 45.69 2.77
3709 3888 5.458041 ACAAATGAAAGTTCCCATCACAG 57.542 39.130 0.00 0.00 0.00 3.66
3730 3909 8.815189 GCTAGCTTACATGGTAACTAAGTTTAC 58.185 37.037 7.70 0.00 37.61 2.01
3732 3911 7.621796 AGCTAGCTTACATGGTAACTAAGTTT 58.378 34.615 12.68 0.00 37.61 2.66
3747 3928 8.196771 AGATATTGCTATGATGAGCTAGCTTAC 58.803 37.037 20.42 13.44 43.27 2.34
3774 3955 6.547930 AGGAGGAAAGTAAGAAGGATACAC 57.452 41.667 0.00 0.00 41.41 2.90
3776 3957 8.075761 TGTAAGGAGGAAAGTAAGAAGGATAC 57.924 38.462 0.00 0.00 0.00 2.24
3799 3983 7.880160 TGAAAGCCTTAATGTGCTATATTGT 57.120 32.000 0.00 0.00 36.66 2.71
3822 4006 5.777850 TCCATCACCTCAATGCATAATTG 57.222 39.130 0.00 0.00 46.10 2.32
3830 4014 3.571401 GGCCTATTTCCATCACCTCAATG 59.429 47.826 0.00 0.00 0.00 2.82
3864 4049 4.823419 TACATTGTCGCCGCGGGG 62.823 66.667 34.33 34.33 0.00 5.73
3865 4050 0.876777 TATTACATTGTCGCCGCGGG 60.877 55.000 29.38 17.41 0.00 6.13
3866 4051 0.931702 TTATTACATTGTCGCCGCGG 59.068 50.000 24.05 24.05 0.00 6.46
3867 4052 1.591158 ACTTATTACATTGTCGCCGCG 59.409 47.619 6.39 6.39 0.00 6.46
3868 4053 3.183775 CCTACTTATTACATTGTCGCCGC 59.816 47.826 0.00 0.00 0.00 6.53
3869 4054 4.613944 TCCTACTTATTACATTGTCGCCG 58.386 43.478 0.00 0.00 0.00 6.46
3870 4055 5.235831 GGTTCCTACTTATTACATTGTCGCC 59.764 44.000 0.00 0.00 0.00 5.54
3871 4056 5.235831 GGGTTCCTACTTATTACATTGTCGC 59.764 44.000 0.00 0.00 0.00 5.19
3872 4057 6.342906 TGGGTTCCTACTTATTACATTGTCG 58.657 40.000 0.00 0.00 0.00 4.35
3879 4064 6.018180 CGCAGATTTGGGTTCCTACTTATTAC 60.018 42.308 0.00 0.00 32.93 1.89
3909 4094 3.392947 TCAACACCTGGTTTATGTCCTCA 59.607 43.478 0.00 0.00 37.72 3.86
3928 4113 3.391296 GGTAGGGGAGCATACAATCTCAA 59.609 47.826 0.00 0.00 0.00 3.02
3931 4116 2.339769 GGGTAGGGGAGCATACAATCT 58.660 52.381 0.00 0.00 0.00 2.40
4028 4216 2.893489 ACAAGTTTTCCTCATGAAGGGC 59.107 45.455 0.00 0.00 46.23 5.19
4059 4247 3.063997 CCACAGAGAAACAGTGTTCACAC 59.936 47.826 9.40 1.53 46.77 3.82
4060 4248 3.055458 TCCACAGAGAAACAGTGTTCACA 60.055 43.478 9.40 0.00 34.82 3.58
4061 4249 3.531538 TCCACAGAGAAACAGTGTTCAC 58.468 45.455 9.40 6.98 34.82 3.18
4062 4250 3.904800 TCCACAGAGAAACAGTGTTCA 57.095 42.857 9.40 0.00 34.82 3.18
4063 4251 5.059833 AGATTCCACAGAGAAACAGTGTTC 58.940 41.667 9.40 3.30 34.82 3.18
4078 4266 4.450419 CGAAGATGCCAATCTAGATTCCAC 59.550 45.833 15.24 8.23 42.60 4.02
4087 4275 3.679389 AGTTCAACGAAGATGCCAATCT 58.321 40.909 0.00 0.00 45.48 2.40
4117 4305 0.815734 ATGCAGAACCATGCTGAAGC 59.184 50.000 3.29 0.00 46.63 3.86
4131 4319 0.242555 TGCACACAATGAGCATGCAG 59.757 50.000 21.98 6.52 38.97 4.41
4194 4385 8.022550 CACAGCATCATAATGTGTACAAAAAGA 58.977 33.333 0.00 0.00 39.54 2.52
4195 4386 7.274033 CCACAGCATCATAATGTGTACAAAAAG 59.726 37.037 0.00 0.00 42.17 2.27
4196 4387 7.089538 CCACAGCATCATAATGTGTACAAAAA 58.910 34.615 0.00 0.00 42.17 1.94
4197 4388 6.208402 ACCACAGCATCATAATGTGTACAAAA 59.792 34.615 0.00 0.00 42.17 2.44
4198 4389 5.709631 ACCACAGCATCATAATGTGTACAAA 59.290 36.000 0.00 0.00 42.17 2.83
4235 4427 2.503331 TGTACATCAACAAGCACCTGG 58.497 47.619 0.00 0.00 0.00 4.45
4244 4436 2.039613 TGGGTCAGCATGTACATCAACA 59.960 45.455 5.07 0.00 37.40 3.33
4254 4446 0.617413 AGGAGTTCTGGGTCAGCATG 59.383 55.000 0.00 0.00 37.54 4.06
4262 4454 1.915141 ATGCAACAAGGAGTTCTGGG 58.085 50.000 0.00 0.00 38.74 4.45
4288 4480 6.947464 ACGGATCAGGAAAAGAAGAGAATAA 58.053 36.000 0.00 0.00 0.00 1.40
4352 4546 2.670905 CACAGAAATGGCATGCATTGTG 59.329 45.455 21.36 19.90 0.00 3.33
4365 4559 2.290960 GGTACCTGAAGGGCACAGAAAT 60.291 50.000 4.06 0.00 40.27 2.17
4375 4569 1.278985 TCAGCACATGGTACCTGAAGG 59.721 52.381 14.36 0.00 42.17 3.46
4382 4576 4.970662 AACATGATTCAGCACATGGTAC 57.029 40.909 0.00 0.00 45.31 3.34
4398 4592 8.958043 GCAGAAACTAAAGTTAGAACAAACATG 58.042 33.333 5.09 0.00 37.25 3.21
4412 4607 9.534565 TGAGTTATAGCATAGCAGAAACTAAAG 57.465 33.333 0.00 0.00 30.33 1.85
4416 4611 9.482627 GTTATGAGTTATAGCATAGCAGAAACT 57.517 33.333 0.00 0.00 31.88 2.66
4521 4723 7.048512 CGGATATTAGAACTCAGAAGGGTTTT 58.951 38.462 0.00 0.00 0.00 2.43
4525 4727 6.406692 TTCGGATATTAGAACTCAGAAGGG 57.593 41.667 0.00 0.00 0.00 3.95
4573 4775 8.480643 TTCTTTTCATTTCGGCTGTTTTAAAA 57.519 26.923 0.00 0.00 0.00 1.52
4583 4785 5.059404 TCCTGATTTCTTTTCATTTCGGC 57.941 39.130 0.00 0.00 0.00 5.54
4604 4807 7.160049 GGTAGGTACAAGGGAAAATATAGCTC 58.840 42.308 0.00 0.00 0.00 4.09
4606 4809 6.044054 AGGGTAGGTACAAGGGAAAATATAGC 59.956 42.308 0.00 0.00 0.00 2.97
4636 4839 1.597742 ACATGCCGCATCCTACATTC 58.402 50.000 1.86 0.00 0.00 2.67
4644 4847 0.745845 ACTGGAGAACATGCCGCATC 60.746 55.000 1.86 0.00 0.00 3.91
4649 4852 2.191128 AACAGACTGGAGAACATGCC 57.809 50.000 7.51 0.00 0.00 4.40
4689 4892 3.640000 GCCGATCCATGTTCGCCG 61.640 66.667 9.20 0.22 35.31 6.46
4696 4899 2.108514 AACGCACAGCCGATCCATG 61.109 57.895 0.00 0.00 0.00 3.66
4697 4900 2.108514 CAACGCACAGCCGATCCAT 61.109 57.895 0.00 0.00 0.00 3.41
4711 4914 1.792949 GGTGTAGCAGAACAGTCAACG 59.207 52.381 0.00 0.00 0.00 4.10
4785 4988 9.162764 GCTTATTAAAGTTCCACATCTTAGACA 57.837 33.333 0.00 0.00 34.99 3.41
4834 5037 5.107104 CGTGCTATCTTGTTGTGTTGTACAT 60.107 40.000 0.00 0.00 39.48 2.29
4842 5045 3.542712 AAAGCGTGCTATCTTGTTGTG 57.457 42.857 0.00 0.00 0.00 3.33
4844 5047 8.667987 TTATTAAAAAGCGTGCTATCTTGTTG 57.332 30.769 0.00 0.00 0.00 3.33
4857 5060 8.388319 TGAACGGATTTGATTATTAAAAAGCG 57.612 30.769 0.00 0.00 0.00 4.68
4922 5130 3.248841 TGCGACTGAAATTACAAAGCGAA 59.751 39.130 0.00 0.00 0.00 4.70
5058 5266 6.655425 GGGTGCTCAAATCTTCCCTATATTAC 59.345 42.308 0.00 0.00 32.89 1.89
5059 5267 6.240176 GGGGTGCTCAAATCTTCCCTATATTA 60.240 42.308 0.00 0.00 35.65 0.98
5060 5268 5.458215 GGGGTGCTCAAATCTTCCCTATATT 60.458 44.000 0.00 0.00 35.65 1.28
5072 5280 0.035439 CGGTGTAGGGGTGCTCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
5171 5379 7.830697 TCATTTTCATCTCCAGAAGCTTCATAA 59.169 33.333 27.57 11.26 0.00 1.90
5206 5414 5.786311 TCACCGTTTAGCTATTTGTAGTGT 58.214 37.500 0.00 0.00 0.00 3.55
5304 5512 6.522946 TGAATGAAAATCAGGTCAATTTGCA 58.477 32.000 0.00 0.00 36.37 4.08
5461 5669 3.002246 TGATTTCTTGCAATATCCGCGAC 59.998 43.478 8.23 0.00 0.00 5.19
5492 5700 2.133553 CATGTAGCTCCTCTGATTGCG 58.866 52.381 0.00 0.00 0.00 4.85
5498 5706 3.305950 GGATACTGCATGTAGCTCCTCTG 60.306 52.174 19.53 0.00 45.94 3.35
5685 5893 5.520632 AGTAGTAAGCACGCTATGTACATG 58.479 41.667 18.81 9.42 0.00 3.21
5697 5905 7.859598 AGTACGTATGATGTAGTAGTAAGCAC 58.140 38.462 0.00 0.00 0.00 4.40
5700 5908 8.340443 TGCAAGTACGTATGATGTAGTAGTAAG 58.660 37.037 0.00 0.00 0.00 2.34
5780 5988 1.756538 CCAAACACAAGAAGCCCAACT 59.243 47.619 0.00 0.00 0.00 3.16
5786 5994 4.307443 AGCTTAACCAAACACAAGAAGC 57.693 40.909 0.00 0.00 38.44 3.86
5905 6121 7.575365 TGATATATGCATTTGATGTGTTCGAC 58.425 34.615 3.54 0.00 0.00 4.20
5906 6122 7.727331 TGATATATGCATTTGATGTGTTCGA 57.273 32.000 3.54 0.00 0.00 3.71
5907 6123 8.959734 ATTGATATATGCATTTGATGTGTTCG 57.040 30.769 3.54 0.00 0.00 3.95
5911 6127 9.563898 GTGGTATTGATATATGCATTTGATGTG 57.436 33.333 3.54 0.00 0.00 3.21
5912 6128 8.742777 GGTGGTATTGATATATGCATTTGATGT 58.257 33.333 3.54 0.00 0.00 3.06
5913 6129 8.963725 AGGTGGTATTGATATATGCATTTGATG 58.036 33.333 3.54 0.00 0.00 3.07
5914 6130 9.537852 AAGGTGGTATTGATATATGCATTTGAT 57.462 29.630 3.54 0.00 0.00 2.57
5915 6131 8.938801 AAGGTGGTATTGATATATGCATTTGA 57.061 30.769 3.54 0.00 0.00 2.69
6074 6392 1.488812 AGTATTTGCCACGGATAGCCA 59.511 47.619 0.00 0.00 0.00 4.75
6113 6431 1.234821 TGAAGCGCTTTGGGTAGTTG 58.765 50.000 25.84 0.00 0.00 3.16
6116 6434 1.234821 TGTTGAAGCGCTTTGGGTAG 58.765 50.000 25.84 0.00 0.00 3.18
6118 6436 0.385390 CTTGTTGAAGCGCTTTGGGT 59.615 50.000 25.84 0.00 0.00 4.51
6156 6474 1.745087 TCCTGATTTGGCGAAGATTGC 59.255 47.619 0.00 0.00 0.00 3.56
6273 6591 5.746245 CGAAGAGGTTTAGCTAGTTCATGAG 59.254 44.000 0.00 0.00 0.00 2.90
6382 6704 0.836400 AGGAGAAACGAGAAGGGGCA 60.836 55.000 0.00 0.00 0.00 5.36
6425 6747 4.142004 GGCGAAGAAGGTGATTAGGAACTA 60.142 45.833 0.00 0.00 41.75 2.24
6427 6749 2.937149 GGCGAAGAAGGTGATTAGGAAC 59.063 50.000 0.00 0.00 0.00 3.62
6517 6840 4.116961 CTGCCACTATTGCCAATTTCATG 58.883 43.478 0.00 0.00 0.00 3.07
6541 6864 6.647481 TGAAGTTGAATGAGCAAATGAAATGG 59.353 34.615 0.00 0.00 0.00 3.16
6543 6866 7.548075 GGATGAAGTTGAATGAGCAAATGAAAT 59.452 33.333 0.00 0.00 0.00 2.17
6547 6870 5.716094 TGGATGAAGTTGAATGAGCAAATG 58.284 37.500 0.00 0.00 0.00 2.32
6667 6990 5.916661 AAAACTCCTAGTTCTCAGCGATA 57.083 39.130 0.00 0.00 37.47 2.92
6671 6994 5.096849 CGAGTAAAACTCCTAGTTCTCAGC 58.903 45.833 1.63 0.00 42.12 4.26
6707 7030 7.907389 ACCATCACTATTTACATGATATCCGT 58.093 34.615 0.00 0.16 31.83 4.69
6735 7058 7.833682 TGTATTACTTGTTTGATCCATCCATGT 59.166 33.333 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.