Multiple sequence alignment - TraesCS3B01G334300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G334300 chr3B 100.000 3949 0 0 1 3949 540485020 540481072 0.000000e+00 7293.0
1 TraesCS3B01G334300 chr3B 92.308 377 17 7 310 686 540489739 540489375 3.500000e-145 525.0
2 TraesCS3B01G334300 chr3B 84.701 451 66 3 2488 2936 540658455 540658006 7.780000e-122 448.0
3 TraesCS3B01G334300 chr3B 91.720 157 13 0 1000 1156 540660596 540660440 6.640000e-53 219.0
4 TraesCS3B01G334300 chr3B 96.429 84 3 0 3706 3789 540481257 540481174 5.320000e-29 139.0
5 TraesCS3B01G334300 chr3B 96.429 84 3 0 3764 3847 540481315 540481232 5.320000e-29 139.0
6 TraesCS3B01G334300 chr3B 97.872 47 0 1 1807 1853 240592441 240592396 3.270000e-11 80.5
7 TraesCS3B01G334300 chr3D 86.039 1189 106 39 2468 3645 414640298 414639159 0.000000e+00 1221.0
8 TraesCS3B01G334300 chr3D 90.099 707 28 13 686 1365 414642190 414641499 0.000000e+00 880.0
9 TraesCS3B01G334300 chr3D 87.888 644 44 17 1852 2475 414641250 414640621 0.000000e+00 726.0
10 TraesCS3B01G334300 chr3D 84.807 441 65 2 2488 2927 414767104 414766665 3.620000e-120 442.0
11 TraesCS3B01G334300 chr3D 88.703 239 12 5 1581 1814 414641484 414641256 1.080000e-70 278.0
12 TraesCS3B01G334300 chr3D 91.720 157 13 0 1000 1156 414769142 414768986 6.640000e-53 219.0
13 TraesCS3B01G334300 chr3D 84.472 161 10 5 3764 3922 414639153 414639006 1.140000e-30 145.0
14 TraesCS3B01G334300 chr3D 94.565 92 3 1 3702 3791 414639157 414639066 1.480000e-29 141.0
15 TraesCS3B01G334300 chr3D 95.918 49 2 0 1805 1853 498872636 498872588 3.270000e-11 80.5
16 TraesCS3B01G334300 chr3D 91.228 57 3 2 1797 1853 177818879 177818825 4.230000e-10 76.8
17 TraesCS3B01G334300 chr3D 100.000 28 0 0 3706 3733 414639093 414639066 7.000000e-03 52.8
18 TraesCS3B01G334300 chr2B 93.886 687 27 4 1 686 545409738 545409066 0.000000e+00 1022.0
19 TraesCS3B01G334300 chr2B 91.799 378 16 10 310 686 545414432 545414069 2.720000e-141 512.0
20 TraesCS3B01G334300 chr2B 92.453 53 3 1 1802 1853 532093913 532093861 1.520000e-09 75.0
21 TraesCS3B01G334300 chr1D 93.878 686 28 3 1 686 10818992 10818321 0.000000e+00 1022.0
22 TraesCS3B01G334300 chr1D 92.566 686 37 3 1 686 21738819 21739490 0.000000e+00 972.0
23 TraesCS3B01G334300 chr1D 90.716 377 21 9 310 686 10823713 10823351 1.280000e-134 490.0
24 TraesCS3B01G334300 chr7B 92.857 686 35 8 1 686 391022236 391021565 0.000000e+00 983.0
25 TraesCS3B01G334300 chr7B 92.431 687 35 6 1 686 438942286 438941616 0.000000e+00 965.0
26 TraesCS3B01G334300 chr7B 91.534 378 17 10 310 686 438947002 438946639 1.270000e-139 507.0
27 TraesCS3B01G334300 chr7B 90.909 55 5 0 1799 1853 122781254 122781200 1.520000e-09 75.0
28 TraesCS3B01G334300 chr3A 86.364 946 64 31 2992 3919 535725094 535725992 0.000000e+00 972.0
29 TraesCS3B01G334300 chr3A 90.709 635 31 14 1850 2475 535717948 535718563 0.000000e+00 821.0
30 TraesCS3B01G334300 chr3A 94.455 523 26 2 2468 2990 535719223 535719742 0.000000e+00 802.0
31 TraesCS3B01G334300 chr3A 87.304 638 32 21 739 1359 535715770 535716375 0.000000e+00 684.0
32 TraesCS3B01G334300 chr3A 84.130 460 69 3 2471 2927 535326231 535326689 3.620000e-120 442.0
33 TraesCS3B01G334300 chr3A 90.506 158 15 0 1000 1157 535323795 535323952 4.000000e-50 209.0
34 TraesCS3B01G334300 chr3A 84.158 202 11 10 2293 2475 535718696 535718895 4.060000e-40 176.0
35 TraesCS3B01G334300 chr3A 81.818 121 13 6 1584 1703 535717773 535717885 4.200000e-15 93.5
36 TraesCS3B01G334300 chr5D 92.140 687 39 4 1 686 360034848 360034176 0.000000e+00 955.0
37 TraesCS3B01G334300 chr7A 91.121 687 45 4 1 687 112093617 112092947 0.000000e+00 917.0
38 TraesCS3B01G334300 chr1A 88.501 687 65 4 1 686 155805260 155805933 0.000000e+00 819.0
39 TraesCS3B01G334300 chr5B 87.971 690 62 14 1 686 692801190 692800518 0.000000e+00 795.0
40 TraesCS3B01G334300 chr5B 96.078 51 1 1 1804 1853 316712710 316712660 9.100000e-12 82.4
41 TraesCS3B01G334300 chr1B 91.553 367 17 9 320 686 28326429 28326077 9.860000e-136 494.0
42 TraesCS3B01G334300 chr1B 88.235 68 6 2 1788 1853 462982637 462982704 3.270000e-11 80.5
43 TraesCS3B01G334300 chr2D 95.918 49 1 1 1805 1853 270476912 270476959 1.180000e-10 78.7
44 TraesCS3B01G334300 chr6B 91.071 56 4 1 1800 1854 57286798 57286853 1.520000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G334300 chr3B 540481072 540485020 3948 True 2523.666667 7293 97.619333 1 3949 3 chr3B.!!$R3 3948
1 TraesCS3B01G334300 chr3B 540658006 540660596 2590 True 333.500000 448 88.210500 1000 2936 2 chr3B.!!$R4 1936
2 TraesCS3B01G334300 chr3D 414639006 414642190 3184 True 491.971429 1221 90.252286 686 3922 7 chr3D.!!$R3 3236
3 TraesCS3B01G334300 chr3D 414766665 414769142 2477 True 330.500000 442 88.263500 1000 2927 2 chr3D.!!$R4 1927
4 TraesCS3B01G334300 chr2B 545409066 545409738 672 True 1022.000000 1022 93.886000 1 686 1 chr2B.!!$R2 685
5 TraesCS3B01G334300 chr1D 10818321 10818992 671 True 1022.000000 1022 93.878000 1 686 1 chr1D.!!$R1 685
6 TraesCS3B01G334300 chr1D 21738819 21739490 671 False 972.000000 972 92.566000 1 686 1 chr1D.!!$F1 685
7 TraesCS3B01G334300 chr7B 391021565 391022236 671 True 983.000000 983 92.857000 1 686 1 chr7B.!!$R2 685
8 TraesCS3B01G334300 chr7B 438941616 438942286 670 True 965.000000 965 92.431000 1 686 1 chr7B.!!$R3 685
9 TraesCS3B01G334300 chr3A 535725094 535725992 898 False 972.000000 972 86.364000 2992 3919 1 chr3A.!!$F1 927
10 TraesCS3B01G334300 chr3A 535715770 535719742 3972 False 515.300000 821 87.688800 739 2990 5 chr3A.!!$F3 2251
11 TraesCS3B01G334300 chr3A 535323795 535326689 2894 False 325.500000 442 87.318000 1000 2927 2 chr3A.!!$F2 1927
12 TraesCS3B01G334300 chr5D 360034176 360034848 672 True 955.000000 955 92.140000 1 686 1 chr5D.!!$R1 685
13 TraesCS3B01G334300 chr7A 112092947 112093617 670 True 917.000000 917 91.121000 1 687 1 chr7A.!!$R1 686
14 TraesCS3B01G334300 chr1A 155805260 155805933 673 False 819.000000 819 88.501000 1 686 1 chr1A.!!$F1 685
15 TraesCS3B01G334300 chr5B 692800518 692801190 672 True 795.000000 795 87.971000 1 686 1 chr5B.!!$R2 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.674895 GGATGCCGTCAGTTCTTGCT 60.675 55.0 0.00 0.00 0.00 3.91 F
1222 1305 0.033405 CTCAAGAGGGGTCTCCGGTA 60.033 60.0 0.00 0.00 40.83 4.02 F
1223 1306 0.033405 TCAAGAGGGGTCTCCGGTAG 60.033 60.0 0.00 0.00 40.83 3.18 F
1784 4056 0.038343 TGGCGGCAAATTTTCTGCTC 60.038 50.0 18.97 11.04 39.82 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 2525 0.172803 AGACGCAATGTACTCCCGAC 59.827 55.0 0.00 0.00 0.00 4.79 R
2843 6160 0.172352 TCACATGCAGATACGCGTCA 59.828 50.0 18.63 7.72 33.35 4.35 R
2854 6171 1.180456 CCACCAGGCTTTCACATGCA 61.180 55.0 0.00 0.00 0.00 3.96 R
3690 7073 0.253044 ACCTCATGCGTTGCTATGGT 59.747 50.0 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.521958 CTTCCCGGATGCCGTCAGTT 62.522 60.000 0.73 0.00 46.80 3.16
65 66 0.674895 GGATGCCGTCAGTTCTTGCT 60.675 55.000 0.00 0.00 0.00 3.91
194 195 2.028876 TCATGGCGAAGGATCTCGTAA 58.971 47.619 6.28 0.00 40.99 3.18
201 202 2.097142 CGAAGGATCTCGTAAACGGAGT 59.903 50.000 2.24 0.00 40.29 3.85
206 207 0.896940 TCTCGTAAACGGAGTGGCCT 60.897 55.000 3.32 0.00 45.00 5.19
329 331 5.068855 CAGATGTGAGGATCTCTCTTGCTAA 59.931 44.000 11.12 0.00 42.86 3.09
427 430 2.093869 GCACCTCTATCCGTTACAACCA 60.094 50.000 0.00 0.00 0.00 3.67
429 432 4.181578 CACCTCTATCCGTTACAACCAAG 58.818 47.826 0.00 0.00 0.00 3.61
430 433 3.195661 CCTCTATCCGTTACAACCAAGC 58.804 50.000 0.00 0.00 0.00 4.01
431 434 3.195661 CTCTATCCGTTACAACCAAGCC 58.804 50.000 0.00 0.00 0.00 4.35
432 435 1.931172 CTATCCGTTACAACCAAGCCG 59.069 52.381 0.00 0.00 0.00 5.52
433 436 1.303091 ATCCGTTACAACCAAGCCGC 61.303 55.000 0.00 0.00 0.00 6.53
434 437 2.172419 CGTTACAACCAAGCCGCG 59.828 61.111 0.00 0.00 0.00 6.46
435 438 2.559330 GTTACAACCAAGCCGCGG 59.441 61.111 24.05 24.05 0.00 6.46
436 439 3.358707 TTACAACCAAGCCGCGGC 61.359 61.111 42.34 42.34 42.33 6.53
487 491 5.724854 TCCTAGCCAATCCTTACAAGTAACT 59.275 40.000 0.00 0.00 0.00 2.24
491 496 3.621715 CCAATCCTTACAAGTAACTCGGC 59.378 47.826 0.00 0.00 0.00 5.54
572 577 0.907704 TGGTCTCTTGGCCCGTGTAT 60.908 55.000 0.00 0.00 0.00 2.29
589 594 2.292918 TGTATACTTGGGCCTCTGGTCT 60.293 50.000 4.53 0.00 0.00 3.85
690 695 0.833834 ACAGGGCTGCTGACAGTACT 60.834 55.000 3.99 0.00 46.30 2.73
719 724 1.002430 AGCGGACTGAAGATTGCAAGA 59.998 47.619 4.94 0.00 0.00 3.02
726 731 3.244491 ACTGAAGATTGCAAGAGAGCTGT 60.244 43.478 4.94 0.00 34.99 4.40
737 742 3.184683 GAGCTGTCTCTTGCGGCG 61.185 66.667 0.51 0.51 42.62 6.46
831 836 2.945008 TGTGGCTGTGTTCTTCTCAAAG 59.055 45.455 0.00 0.00 0.00 2.77
1157 1190 0.168788 CTCGCCAGGAACGTACGTAA 59.831 55.000 23.12 0.00 0.00 3.18
1222 1305 0.033405 CTCAAGAGGGGTCTCCGGTA 60.033 60.000 0.00 0.00 40.83 4.02
1223 1306 0.033405 TCAAGAGGGGTCTCCGGTAG 60.033 60.000 0.00 0.00 40.83 3.18
1241 1324 4.090057 GCGTTTCCGGTGCAGCTC 62.090 66.667 14.92 0.00 33.68 4.09
1243 1326 2.034879 CGTTTCCGGTGCAGCTCAT 61.035 57.895 14.92 0.00 0.00 2.90
1263 1346 0.469705 TGAAACCCATGCCTGCTTGT 60.470 50.000 4.59 0.00 0.00 3.16
1372 1644 3.498774 ACAAGCCTTGTTCTGATGACT 57.501 42.857 3.74 0.00 42.22 3.41
1373 1645 3.144506 ACAAGCCTTGTTCTGATGACTG 58.855 45.455 3.74 0.00 42.22 3.51
1375 1647 1.350351 AGCCTTGTTCTGATGACTGCT 59.650 47.619 0.00 0.00 0.00 4.24
1377 1649 2.935201 GCCTTGTTCTGATGACTGCTAG 59.065 50.000 0.00 0.00 0.00 3.42
1383 2475 5.479306 TGTTCTGATGACTGCTAGGTTAAC 58.521 41.667 0.00 0.00 0.00 2.01
1395 2487 4.162040 CTAGGTTAACTAGTCCCTCCGA 57.838 50.000 10.95 1.90 43.47 4.55
1397 2489 3.991683 AGGTTAACTAGTCCCTCCGATT 58.008 45.455 5.42 0.00 0.00 3.34
1399 2491 3.703052 GGTTAACTAGTCCCTCCGATTCA 59.297 47.826 5.42 0.00 0.00 2.57
1400 2492 4.344390 GGTTAACTAGTCCCTCCGATTCAT 59.656 45.833 5.42 0.00 0.00 2.57
1401 2493 5.537674 GGTTAACTAGTCCCTCCGATTCATA 59.462 44.000 5.42 0.00 0.00 2.15
1402 2494 6.210984 GGTTAACTAGTCCCTCCGATTCATAT 59.789 42.308 5.42 0.00 0.00 1.78
1403 2495 7.256225 GGTTAACTAGTCCCTCCGATTCATATT 60.256 40.741 5.42 0.00 0.00 1.28
1407 2499 8.437274 ACTAGTCCCTCCGATTCATATTAATT 57.563 34.615 0.00 0.00 0.00 1.40
1409 2501 7.316393 AGTCCCTCCGATTCATATTAATTCA 57.684 36.000 0.00 0.00 0.00 2.57
1411 2503 6.934645 GTCCCTCCGATTCATATTAATTCACA 59.065 38.462 0.00 0.00 0.00 3.58
1413 2505 6.936900 CCCTCCGATTCATATTAATTCACACT 59.063 38.462 0.00 0.00 0.00 3.55
1415 2507 7.189693 TCCGATTCATATTAATTCACACTGC 57.810 36.000 0.00 0.00 0.00 4.40
1416 2508 6.992123 TCCGATTCATATTAATTCACACTGCT 59.008 34.615 0.00 0.00 0.00 4.24
1417 2509 7.498900 TCCGATTCATATTAATTCACACTGCTT 59.501 33.333 0.00 0.00 0.00 3.91
1418 2510 8.131100 CCGATTCATATTAATTCACACTGCTTT 58.869 33.333 0.00 0.00 0.00 3.51
1429 2521 6.935741 TTCACACTGCTTTAGTACAACATT 57.064 33.333 0.00 0.00 37.60 2.71
1430 2522 6.935741 TCACACTGCTTTAGTACAACATTT 57.064 33.333 0.00 0.00 37.60 2.32
1431 2523 6.724263 TCACACTGCTTTAGTACAACATTTG 58.276 36.000 0.00 0.00 37.60 2.32
1432 2524 5.399301 CACACTGCTTTAGTACAACATTTGC 59.601 40.000 0.00 0.00 37.60 3.68
1433 2525 4.612614 CACTGCTTTAGTACAACATTTGCG 59.387 41.667 0.00 0.00 37.60 4.85
1437 2529 4.391358 CTTTAGTACAACATTTGCGTCGG 58.609 43.478 0.00 0.00 0.00 4.79
1441 2533 0.534203 ACAACATTTGCGTCGGGAGT 60.534 50.000 0.00 0.00 0.00 3.85
1442 2534 1.270412 ACAACATTTGCGTCGGGAGTA 60.270 47.619 0.00 0.00 0.00 2.59
1443 2535 1.127951 CAACATTTGCGTCGGGAGTAC 59.872 52.381 0.00 0.00 0.00 2.73
1448 3473 1.017177 TTGCGTCGGGAGTACATTGC 61.017 55.000 0.00 0.00 0.00 3.56
1504 3529 3.843027 AGAACCTGATCAACTGTCTCCAT 59.157 43.478 0.00 0.00 0.00 3.41
1517 3746 4.194640 CTGTCTCCATACAAACCATCCAG 58.805 47.826 0.00 0.00 0.00 3.86
1525 3754 3.237268 ACAAACCATCCAGCCTGTTAA 57.763 42.857 0.00 0.00 0.00 2.01
1527 3756 3.181434 ACAAACCATCCAGCCTGTTAAGA 60.181 43.478 0.00 0.00 0.00 2.10
1532 3761 4.130118 CCATCCAGCCTGTTAAGATACAC 58.870 47.826 0.00 0.00 0.00 2.90
1533 3762 3.520290 TCCAGCCTGTTAAGATACACG 57.480 47.619 0.00 0.00 0.00 4.49
1534 3763 1.933853 CCAGCCTGTTAAGATACACGC 59.066 52.381 0.00 0.00 32.45 5.34
1535 3764 2.616960 CAGCCTGTTAAGATACACGCA 58.383 47.619 0.00 0.00 34.03 5.24
1536 3765 2.348666 CAGCCTGTTAAGATACACGCAC 59.651 50.000 0.00 0.00 34.03 5.34
1538 3767 3.000727 GCCTGTTAAGATACACGCACTT 58.999 45.455 0.00 0.00 32.54 3.16
1539 3768 3.181520 GCCTGTTAAGATACACGCACTTG 60.182 47.826 0.00 0.00 32.54 3.16
1540 3769 3.370978 CCTGTTAAGATACACGCACTTGG 59.629 47.826 0.00 0.00 0.00 3.61
1541 3770 3.994392 CTGTTAAGATACACGCACTTGGT 59.006 43.478 0.00 0.00 0.00 3.67
1542 3771 5.136816 TGTTAAGATACACGCACTTGGTA 57.863 39.130 0.00 0.00 0.00 3.25
1543 3772 5.539979 TGTTAAGATACACGCACTTGGTAA 58.460 37.500 0.00 0.00 0.00 2.85
1544 3773 5.406175 TGTTAAGATACACGCACTTGGTAAC 59.594 40.000 0.00 0.00 0.00 2.50
1546 3775 4.267349 AGATACACGCACTTGGTAACTT 57.733 40.909 0.00 0.00 37.61 2.66
1548 3777 5.061179 AGATACACGCACTTGGTAACTTTT 58.939 37.500 0.00 0.00 37.61 2.27
1549 3778 5.529800 AGATACACGCACTTGGTAACTTTTT 59.470 36.000 0.00 0.00 37.61 1.94
1551 3780 3.181494 ACACGCACTTGGTAACTTTTTCC 60.181 43.478 0.00 0.00 37.61 3.13
1552 3781 2.359848 ACGCACTTGGTAACTTTTTCCC 59.640 45.455 0.00 0.00 37.61 3.97
1553 3782 2.621526 CGCACTTGGTAACTTTTTCCCT 59.378 45.455 0.00 0.00 37.61 4.20
1554 3783 3.304458 CGCACTTGGTAACTTTTTCCCTC 60.304 47.826 0.00 0.00 37.61 4.30
1555 3784 3.005472 GCACTTGGTAACTTTTTCCCTCC 59.995 47.826 0.00 0.00 37.61 4.30
1556 3785 4.470602 CACTTGGTAACTTTTTCCCTCCT 58.529 43.478 0.00 0.00 37.61 3.69
1557 3786 5.627135 CACTTGGTAACTTTTTCCCTCCTA 58.373 41.667 0.00 0.00 37.61 2.94
1558 3787 6.246163 CACTTGGTAACTTTTTCCCTCCTAT 58.754 40.000 0.00 0.00 37.61 2.57
1560 3789 6.719829 ACTTGGTAACTTTTTCCCTCCTATTG 59.280 38.462 0.00 0.00 37.61 1.90
1561 3790 6.208840 TGGTAACTTTTTCCCTCCTATTGT 57.791 37.500 0.00 0.00 37.61 2.71
1562 3791 7.332433 TGGTAACTTTTTCCCTCCTATTGTA 57.668 36.000 0.00 0.00 37.61 2.41
1563 3792 7.757611 TGGTAACTTTTTCCCTCCTATTGTAA 58.242 34.615 0.00 0.00 37.61 2.41
1566 3795 6.208840 ACTTTTTCCCTCCTATTGTAACCA 57.791 37.500 0.00 0.00 0.00 3.67
1568 3797 6.890268 ACTTTTTCCCTCCTATTGTAACCATC 59.110 38.462 0.00 0.00 0.00 3.51
1569 3798 5.382664 TTTCCCTCCTATTGTAACCATCC 57.617 43.478 0.00 0.00 0.00 3.51
1571 3800 4.577096 TCCCTCCTATTGTAACCATCCAT 58.423 43.478 0.00 0.00 0.00 3.41
1572 3801 4.981647 TCCCTCCTATTGTAACCATCCATT 59.018 41.667 0.00 0.00 0.00 3.16
1573 3802 5.073144 TCCCTCCTATTGTAACCATCCATTC 59.927 44.000 0.00 0.00 0.00 2.67
1575 3804 5.221641 CCTCCTATTGTAACCATCCATTCGA 60.222 44.000 0.00 0.00 0.00 3.71
1576 3805 5.607477 TCCTATTGTAACCATCCATTCGAC 58.393 41.667 0.00 0.00 0.00 4.20
1577 3806 4.447724 CCTATTGTAACCATCCATTCGACG 59.552 45.833 0.00 0.00 0.00 5.12
1578 3807 3.596310 TTGTAACCATCCATTCGACGA 57.404 42.857 0.00 0.00 0.00 4.20
1606 3835 7.876068 TGGTACTATTCGAAATTTCAGACTTGT 59.124 33.333 17.99 16.13 0.00 3.16
1617 3886 7.807977 AATTTCAGACTTGTCTTCTAAGCAA 57.192 32.000 0.00 0.00 0.00 3.91
1618 3887 7.992754 ATTTCAGACTTGTCTTCTAAGCAAT 57.007 32.000 0.00 0.00 0.00 3.56
1619 3888 7.807977 TTTCAGACTTGTCTTCTAAGCAATT 57.192 32.000 0.00 0.00 0.00 2.32
1620 3889 7.807977 TTCAGACTTGTCTTCTAAGCAATTT 57.192 32.000 0.00 0.00 0.00 1.82
1622 3891 8.225603 TCAGACTTGTCTTCTAAGCAATTTTT 57.774 30.769 0.00 0.00 0.00 1.94
1688 3958 5.978322 CGATCCCTTTAGTAGCTACAGTTTC 59.022 44.000 25.28 9.77 0.00 2.78
1703 3975 4.911053 ACAGTTTCGTTGAACGCAATTAA 58.089 34.783 13.62 0.00 42.21 1.40
1708 3980 3.816091 TCGTTGAACGCAATTAACCATG 58.184 40.909 13.62 0.00 42.21 3.66
1720 3992 7.148606 ACGCAATTAACCATGAATTTGAATGTG 60.149 33.333 0.00 0.00 0.00 3.21
1766 4038 3.131577 TCTGCTACTACGGGGTATGTTTG 59.868 47.826 0.00 0.00 0.00 2.93
1772 4044 2.361865 GGGGTATGTTTGGCGGCA 60.362 61.111 7.97 7.97 0.00 5.69
1773 4045 1.979693 GGGGTATGTTTGGCGGCAA 60.980 57.895 21.79 21.79 0.00 4.52
1774 4046 1.536943 GGGGTATGTTTGGCGGCAAA 61.537 55.000 30.73 30.73 0.00 3.68
1775 4047 0.534873 GGGTATGTTTGGCGGCAAAT 59.465 50.000 35.37 24.46 0.00 2.32
1777 4049 2.614229 GGGTATGTTTGGCGGCAAATTT 60.614 45.455 35.37 26.96 0.00 1.82
1779 4051 3.124466 GGTATGTTTGGCGGCAAATTTTC 59.876 43.478 35.37 23.95 0.00 2.29
1780 4052 2.611225 TGTTTGGCGGCAAATTTTCT 57.389 40.000 35.37 0.00 0.00 2.52
1781 4053 2.208431 TGTTTGGCGGCAAATTTTCTG 58.792 42.857 35.37 0.00 0.00 3.02
1783 4055 0.392336 TTGGCGGCAAATTTTCTGCT 59.608 45.000 23.43 0.00 39.82 4.24
1784 4056 0.038343 TGGCGGCAAATTTTCTGCTC 60.038 50.000 18.97 11.04 39.82 4.26
1786 4058 1.677353 GCGGCAAATTTTCTGCTCGC 61.677 55.000 13.55 14.72 45.26 5.03
1787 4059 1.072666 CGGCAAATTTTCTGCTCGCC 61.073 55.000 3.89 3.89 39.82 5.54
1788 4060 0.038343 GGCAAATTTTCTGCTCGCCA 60.038 50.000 8.21 0.00 39.82 5.69
1817 4095 8.639761 TCTATACTAAAAGAAGCATGTACTCCC 58.360 37.037 0.00 0.00 0.00 4.30
1818 4096 5.763876 ACTAAAAGAAGCATGTACTCCCT 57.236 39.130 0.00 0.00 0.00 4.20
1820 4098 3.636153 AAAGAAGCATGTACTCCCTCC 57.364 47.619 0.00 0.00 0.00 4.30
1823 4101 0.824759 AAGCATGTACTCCCTCCGTC 59.175 55.000 0.00 0.00 0.00 4.79
1824 4102 1.043673 AGCATGTACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
1825 4103 2.029307 GCATGTACTCCCTCCGTCCC 62.029 65.000 0.00 0.00 0.00 4.46
1827 4105 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
1828 4106 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1829 4107 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1831 4109 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1832 4110 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1833 4111 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1834 4112 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1835 4113 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1837 4115 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1839 4117 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1840 4118 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1841 4119 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1842 4120 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
1845 4123 6.149474 CGTCCCAAAATAAGTGTCTCAATCTT 59.851 38.462 0.00 0.00 0.00 2.40
1847 4125 8.669243 GTCCCAAAATAAGTGTCTCAATCTTAG 58.331 37.037 0.00 0.00 0.00 2.18
1848 4126 8.383175 TCCCAAAATAAGTGTCTCAATCTTAGT 58.617 33.333 0.00 0.00 0.00 2.24
1941 4408 6.166984 TGTGGCATTTGATTCCTGTTTTTA 57.833 33.333 0.00 0.00 0.00 1.52
2092 4567 4.020218 TGTCTCTCTTTTCCATCCATCGTT 60.020 41.667 0.00 0.00 0.00 3.85
2210 4699 2.661718 TCCAGTTTTCCACCTTGGTTC 58.338 47.619 0.00 0.00 39.03 3.62
2255 4814 7.495606 TCAGTATAAGATGACGTGATGCAAAAT 59.504 33.333 0.00 0.00 0.00 1.82
2257 4816 9.494271 AGTATAAGATGACGTGATGCAAAATAT 57.506 29.630 0.00 0.00 0.00 1.28
2305 4864 4.445735 GCTGTTATTGTATTAGGAGCCCCA 60.446 45.833 0.00 0.00 33.88 4.96
2306 4865 5.749032 GCTGTTATTGTATTAGGAGCCCCAT 60.749 44.000 0.00 0.00 33.88 4.00
2318 4877 0.254107 AGCCCCATTCCCTCCCTTTA 60.254 55.000 0.00 0.00 0.00 1.85
2333 4892 3.888930 TCCCTTTACCAGCTCTTGTTTTG 59.111 43.478 0.00 0.00 0.00 2.44
2338 5203 1.683385 ACCAGCTCTTGTTTTGCCTTC 59.317 47.619 0.00 0.00 0.00 3.46
2531 5848 0.961019 ACACATGCCGCAAGAACAAT 59.039 45.000 1.93 0.00 43.02 2.71
2540 5857 1.168714 GCAAGAACAATCCGGAGCTT 58.831 50.000 11.34 5.43 0.00 3.74
2759 6076 2.487265 CCTGACCAAGTGCAAGTACCTT 60.487 50.000 0.00 0.00 0.00 3.50
2780 6097 1.962402 GCTGGAGACTTCCTCAGCCTA 60.962 57.143 9.17 0.00 44.36 3.93
2802 6119 2.093869 GCGGACCTTAACCATGTGTCTA 60.094 50.000 0.00 0.00 0.00 2.59
2843 6160 2.927028 ACACCCTACGCTTCTTTGTTT 58.073 42.857 0.00 0.00 0.00 2.83
2854 6171 3.120649 GCTTCTTTGTTTGACGCGTATCT 60.121 43.478 13.97 0.00 0.00 1.98
2934 6251 4.320023 TGCACTGAAGAAGCCGTATTTTA 58.680 39.130 0.00 0.00 0.00 1.52
2990 6307 2.081462 CGAAATAAGCCGGGTTGTCTT 58.919 47.619 28.60 17.49 0.00 3.01
3011 6329 3.162666 TCCGATGTTTGTCTGTCTAGGT 58.837 45.455 0.00 0.00 0.00 3.08
3020 6338 0.317160 TCTGTCTAGGTGCGTGTTGG 59.683 55.000 0.00 0.00 0.00 3.77
3059 6377 3.481903 CGCGCGTTGCTGTGAGAT 61.482 61.111 24.19 0.00 43.27 2.75
3145 6479 4.370917 GGTTTGCTTGTGTTTGATGATGT 58.629 39.130 0.00 0.00 0.00 3.06
3195 6529 3.423749 TCAATGTGATGGACTTGCATGT 58.576 40.909 4.68 4.68 0.00 3.21
3230 6565 1.399791 GAGGCTTGCATGTGCTAGAAC 59.600 52.381 18.23 10.73 44.63 3.01
3233 6568 1.061711 GCTTGCATGTGCTAGAACGAG 59.938 52.381 18.23 0.00 44.63 4.18
3236 6571 3.251479 TGCATGTGCTAGAACGAGAAT 57.749 42.857 6.55 0.00 42.66 2.40
3301 6650 5.014123 AGGGAATCTTCAGTATGTTCCACAA 59.986 40.000 5.00 0.00 40.01 3.33
3323 6672 8.551205 CACAAGATATACATCGCAACAATAGTT 58.449 33.333 0.00 0.00 35.81 2.24
3354 6703 3.056393 TCTCTCCTTGCATTTTGCCATTG 60.056 43.478 0.00 0.00 44.23 2.82
3372 6722 6.014755 TGCCATTGTTTTGTTAGATCATCCAA 60.015 34.615 0.00 0.00 0.00 3.53
3390 6740 2.027561 CCAACAACCTCCCAATAGACGA 60.028 50.000 0.00 0.00 0.00 4.20
3397 6747 0.178068 TCCCAATAGACGAAGCCTGC 59.822 55.000 0.00 0.00 0.00 4.85
3399 6749 1.412710 CCCAATAGACGAAGCCTGCTA 59.587 52.381 0.00 0.00 0.00 3.49
3401 6751 2.546795 CCAATAGACGAAGCCTGCTAGG 60.547 54.545 0.00 0.00 38.80 3.02
3402 6752 2.074729 ATAGACGAAGCCTGCTAGGT 57.925 50.000 0.00 0.00 37.80 3.08
3403 6753 1.848652 TAGACGAAGCCTGCTAGGTT 58.151 50.000 0.00 0.00 37.80 3.50
3404 6754 0.247736 AGACGAAGCCTGCTAGGTTG 59.752 55.000 0.00 0.00 37.80 3.77
3405 6755 0.741221 GACGAAGCCTGCTAGGTTGG 60.741 60.000 0.00 2.40 37.80 3.77
3406 6756 1.192146 ACGAAGCCTGCTAGGTTGGA 61.192 55.000 7.30 0.00 37.80 3.53
3407 6757 0.036388 CGAAGCCTGCTAGGTTGGAA 60.036 55.000 0.00 0.00 37.80 3.53
3408 6758 1.407437 CGAAGCCTGCTAGGTTGGAAT 60.407 52.381 0.00 0.00 37.80 3.01
3409 6759 2.019984 GAAGCCTGCTAGGTTGGAATG 58.980 52.381 0.00 0.00 37.80 2.67
3428 6783 3.281727 TGATGTTCAGGTAATGCCTCC 57.718 47.619 0.00 0.00 46.96 4.30
3485 6840 2.943036 ACGGTTTACCAGGATTGTGT 57.057 45.000 0.00 0.00 35.14 3.72
3486 6841 2.500229 ACGGTTTACCAGGATTGTGTG 58.500 47.619 0.00 0.00 35.14 3.82
3487 6842 1.810151 CGGTTTACCAGGATTGTGTGG 59.190 52.381 0.00 0.00 39.98 4.17
3498 6853 7.867921 ACCAGGATTGTGTGGTAATAATTAGA 58.132 34.615 0.00 0.00 45.62 2.10
3499 6854 8.502738 ACCAGGATTGTGTGGTAATAATTAGAT 58.497 33.333 0.00 0.00 45.62 1.98
3531 6886 7.414540 CCCTTTCTCCTCTTCACAAAATAATCG 60.415 40.741 0.00 0.00 0.00 3.34
3606 6961 1.197055 GACATCGAGTAAATGCGCGA 58.803 50.000 12.10 0.00 43.90 5.87
3645 7028 1.720781 AACAAGGCATGGGCTCTTTT 58.279 45.000 0.00 0.00 37.50 2.27
3646 7029 1.720781 ACAAGGCATGGGCTCTTTTT 58.279 45.000 0.00 0.00 37.50 1.94
3672 7055 4.395959 CAATTAACATTGCATGGCCTCT 57.604 40.909 3.32 0.00 33.57 3.69
3673 7056 4.761975 CAATTAACATTGCATGGCCTCTT 58.238 39.130 3.32 0.00 33.57 2.85
3674 7057 5.180271 CAATTAACATTGCATGGCCTCTTT 58.820 37.500 3.32 0.00 33.57 2.52
3675 7058 2.754946 AACATTGCATGGCCTCTTTG 57.245 45.000 3.32 0.00 33.60 2.77
3676 7059 0.899720 ACATTGCATGGCCTCTTTGG 59.100 50.000 3.32 0.00 39.35 3.28
3689 7072 4.367386 CCTCTTTGGCATGAGATTTGAC 57.633 45.455 16.38 0.00 32.44 3.18
3690 7073 3.760151 CCTCTTTGGCATGAGATTTGACA 59.240 43.478 16.38 0.00 32.44 3.58
3691 7074 4.380233 CCTCTTTGGCATGAGATTTGACAC 60.380 45.833 16.38 0.00 30.00 3.67
3692 7075 3.507233 TCTTTGGCATGAGATTTGACACC 59.493 43.478 0.00 0.00 30.00 4.16
3693 7076 2.583024 TGGCATGAGATTTGACACCA 57.417 45.000 0.00 0.00 0.00 4.17
3694 7077 3.090210 TGGCATGAGATTTGACACCAT 57.910 42.857 0.00 0.00 0.00 3.55
3695 7078 4.233632 TGGCATGAGATTTGACACCATA 57.766 40.909 0.00 0.00 0.00 2.74
3696 7079 4.201657 TGGCATGAGATTTGACACCATAG 58.798 43.478 0.00 0.00 0.00 2.23
3697 7080 3.004106 GGCATGAGATTTGACACCATAGC 59.996 47.826 0.00 0.00 0.00 2.97
3698 7081 3.628942 GCATGAGATTTGACACCATAGCA 59.371 43.478 0.00 0.00 0.00 3.49
3699 7082 4.096833 GCATGAGATTTGACACCATAGCAA 59.903 41.667 0.00 0.00 0.00 3.91
3700 7083 5.575957 CATGAGATTTGACACCATAGCAAC 58.424 41.667 0.00 0.00 0.00 4.17
3745 7153 1.453155 GCATGAGGTTTGACGTCCAT 58.547 50.000 14.12 4.98 32.42 3.41
3764 7172 2.008752 TTTGATGCGCGATGAAGAGA 57.991 45.000 12.10 0.00 0.00 3.10
3765 7173 1.564207 TTGATGCGCGATGAAGAGAG 58.436 50.000 12.10 0.00 0.00 3.20
3766 7174 0.249197 TGATGCGCGATGAAGAGAGG 60.249 55.000 12.10 0.00 0.00 3.69
3767 7175 0.249238 GATGCGCGATGAAGAGAGGT 60.249 55.000 12.10 0.00 0.00 3.85
3768 7176 0.176680 ATGCGCGATGAAGAGAGGTT 59.823 50.000 12.10 0.00 0.00 3.50
3769 7177 0.037326 TGCGCGATGAAGAGAGGTTT 60.037 50.000 12.10 0.00 0.00 3.27
3770 7178 0.371645 GCGCGATGAAGAGAGGTTTG 59.628 55.000 12.10 0.00 0.00 2.93
3771 7179 1.996292 CGCGATGAAGAGAGGTTTGA 58.004 50.000 0.00 0.00 0.00 2.69
3772 7180 1.656095 CGCGATGAAGAGAGGTTTGAC 59.344 52.381 0.00 0.00 0.00 3.18
3773 7181 2.688507 GCGATGAAGAGAGGTTTGACA 58.311 47.619 0.00 0.00 0.00 3.58
3774 7182 2.413453 GCGATGAAGAGAGGTTTGACAC 59.587 50.000 0.00 0.00 0.00 3.67
3785 7193 3.297830 GGTTTGACACCATAACAAGGC 57.702 47.619 0.00 0.00 46.42 4.35
3786 7194 2.625790 GGTTTGACACCATAACAAGGCA 59.374 45.455 0.00 0.00 46.42 4.75
3787 7195 3.258123 GGTTTGACACCATAACAAGGCAT 59.742 43.478 0.00 0.00 46.42 4.40
3788 7196 4.236935 GTTTGACACCATAACAAGGCATG 58.763 43.478 0.00 0.00 0.00 4.06
3801 7209 0.687354 AGGCATGAGGTTTGACGTCT 59.313 50.000 17.92 0.00 34.37 4.18
3807 7215 4.556233 CATGAGGTTTGACGTCTAGTTGA 58.444 43.478 17.92 0.00 34.37 3.18
3811 7219 3.064207 GGTTTGACGTCTAGTTGATGCA 58.936 45.455 17.92 0.00 35.15 3.96
3847 7255 3.153369 TGACACCATAACAAGGCATGT 57.847 42.857 0.00 0.00 46.82 3.21
3863 7271 2.033801 GCATGTGCTCTTTGTTGTGTCT 59.966 45.455 0.00 0.00 38.21 3.41
3864 7272 3.624900 CATGTGCTCTTTGTTGTGTCTG 58.375 45.455 0.00 0.00 0.00 3.51
3865 7273 2.984562 TGTGCTCTTTGTTGTGTCTGA 58.015 42.857 0.00 0.00 0.00 3.27
3866 7274 2.938451 TGTGCTCTTTGTTGTGTCTGAG 59.062 45.455 0.00 0.00 0.00 3.35
3903 7311 2.165998 GCAAGGAATGAGCTTGAGGTT 58.834 47.619 0.00 0.00 0.00 3.50
3911 7319 0.034896 GAGCTTGAGGTTGGGACGAA 59.965 55.000 0.00 0.00 0.00 3.85
3926 7334 1.800805 ACGAAGTGTGAGCTCAATGG 58.199 50.000 20.19 9.03 42.51 3.16
3927 7335 0.445436 CGAAGTGTGAGCTCAATGGC 59.555 55.000 20.19 6.54 0.00 4.40
3928 7336 0.807496 GAAGTGTGAGCTCAATGGCC 59.193 55.000 20.19 6.12 0.00 5.36
3929 7337 0.957395 AAGTGTGAGCTCAATGGCCG 60.957 55.000 20.19 0.00 0.00 6.13
3930 7338 2.046023 TGTGAGCTCAATGGCCGG 60.046 61.111 20.19 0.00 0.00 6.13
3931 7339 2.268920 GTGAGCTCAATGGCCGGA 59.731 61.111 20.19 0.00 0.00 5.14
3932 7340 2.109126 GTGAGCTCAATGGCCGGAC 61.109 63.158 20.19 0.56 0.00 4.79
3933 7341 2.514824 GAGCTCAATGGCCGGACC 60.515 66.667 3.83 6.37 39.84 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.144716 GCTCGATGGGCTGATGTCA 59.855 57.895 0.00 0.00 0.00 3.58
194 195 2.342648 GACGAAGGCCACTCCGTT 59.657 61.111 5.01 0.00 40.77 4.44
201 202 4.742201 GCTGAGCGACGAAGGCCA 62.742 66.667 5.01 0.00 0.00 5.36
206 207 2.261671 GAAGGGCTGAGCGACGAA 59.738 61.111 0.00 0.00 0.00 3.85
285 286 1.536284 GGTAATCAGAGCCTTCGTCCG 60.536 57.143 0.00 0.00 0.00 4.79
329 331 6.466904 CCCCATGAAATTCTCAGATCCATAGT 60.467 42.308 0.00 0.00 37.52 2.12
446 449 4.722700 AATTGGACGGCTGCGGCT 62.723 61.111 18.85 0.00 38.73 5.52
487 491 8.517878 GGTGTAATAGTATATAAACTGAGCCGA 58.482 37.037 0.00 0.00 0.00 5.54
491 496 8.521176 AGCGGGTGTAATAGTATATAAACTGAG 58.479 37.037 0.00 0.00 0.00 3.35
572 577 1.351017 CAAAGACCAGAGGCCCAAGTA 59.649 52.381 0.00 0.00 0.00 2.24
589 594 1.805539 CGATCCAGAGCGCGTCAAA 60.806 57.895 8.43 0.00 32.02 2.69
658 663 4.209866 CCTGTAGCCCATGCCCCC 62.210 72.222 0.00 0.00 38.69 5.40
662 667 2.517875 CAGCCCTGTAGCCCATGC 60.518 66.667 0.00 0.00 37.95 4.06
690 695 2.031012 CAGTCCGCTGCAGGTTCA 59.969 61.111 17.12 0.00 35.77 3.18
707 712 3.598299 AGACAGCTCTCTTGCAATCTTC 58.402 45.455 0.00 0.00 34.99 2.87
842 847 2.652941 ACAACACAGCCACACAAAAG 57.347 45.000 0.00 0.00 0.00 2.27
843 848 4.021894 AGTTTACAACACAGCCACACAAAA 60.022 37.500 0.00 0.00 0.00 2.44
844 849 3.508012 AGTTTACAACACAGCCACACAAA 59.492 39.130 0.00 0.00 0.00 2.83
845 850 3.085533 AGTTTACAACACAGCCACACAA 58.914 40.909 0.00 0.00 0.00 3.33
1157 1190 3.392385 TGCAAACTGAATGCGGTAAGCT 61.392 45.455 9.86 0.00 46.76 3.74
1241 1324 0.899720 AGCAGGCATGGGTTTCAATG 59.100 50.000 0.00 0.00 0.00 2.82
1243 1326 0.680618 CAAGCAGGCATGGGTTTCAA 59.319 50.000 0.00 0.00 0.00 2.69
1364 1636 6.458232 ACTAGTTAACCTAGCAGTCATCAG 57.542 41.667 0.88 0.00 46.10 2.90
1365 1637 5.360144 GGACTAGTTAACCTAGCAGTCATCA 59.640 44.000 16.84 0.00 46.10 3.07
1367 1639 4.650131 GGGACTAGTTAACCTAGCAGTCAT 59.350 45.833 16.84 0.00 46.10 3.06
1368 1640 4.021916 GGGACTAGTTAACCTAGCAGTCA 58.978 47.826 16.84 0.00 46.10 3.41
1369 1641 4.279982 AGGGACTAGTTAACCTAGCAGTC 58.720 47.826 11.65 7.50 46.10 3.51
1372 1644 3.639952 GGAGGGACTAGTTAACCTAGCA 58.360 50.000 12.89 0.00 46.10 3.49
1373 1645 2.622470 CGGAGGGACTAGTTAACCTAGC 59.378 54.545 12.89 4.34 46.10 3.42
1375 1647 4.803329 ATCGGAGGGACTAGTTAACCTA 57.197 45.455 12.89 1.60 41.55 3.08
1377 1649 3.703052 TGAATCGGAGGGACTAGTTAACC 59.297 47.826 0.88 0.08 41.55 2.85
1383 2475 8.531982 TGAATTAATATGAATCGGAGGGACTAG 58.468 37.037 0.00 0.00 41.55 2.57
1401 2493 9.062524 TGTTGTACTAAAGCAGTGTGAATTAAT 57.937 29.630 0.00 0.00 38.24 1.40
1402 2494 8.439993 TGTTGTACTAAAGCAGTGTGAATTAA 57.560 30.769 0.00 0.00 38.24 1.40
1403 2495 8.615878 ATGTTGTACTAAAGCAGTGTGAATTA 57.384 30.769 0.00 0.00 38.24 1.40
1407 2499 6.724263 CAAATGTTGTACTAAAGCAGTGTGA 58.276 36.000 0.00 0.00 38.24 3.58
1409 2501 5.519722 GCAAATGTTGTACTAAAGCAGTGT 58.480 37.500 0.00 0.00 38.24 3.55
1411 2503 4.274950 ACGCAAATGTTGTACTAAAGCAGT 59.725 37.500 0.00 0.00 41.62 4.40
1413 2505 4.609559 CGACGCAAATGTTGTACTAAAGCA 60.610 41.667 0.00 0.00 0.00 3.91
1415 2507 4.391358 CCGACGCAAATGTTGTACTAAAG 58.609 43.478 0.00 0.00 0.00 1.85
1416 2508 3.186817 CCCGACGCAAATGTTGTACTAAA 59.813 43.478 0.00 0.00 0.00 1.85
1417 2509 2.737783 CCCGACGCAAATGTTGTACTAA 59.262 45.455 0.00 0.00 0.00 2.24
1418 2510 2.029200 TCCCGACGCAAATGTTGTACTA 60.029 45.455 0.00 0.00 0.00 1.82
1419 2511 1.153353 CCCGACGCAAATGTTGTACT 58.847 50.000 0.00 0.00 0.00 2.73
1420 2512 1.127951 CTCCCGACGCAAATGTTGTAC 59.872 52.381 0.00 0.00 0.00 2.90
1421 2513 1.270412 ACTCCCGACGCAAATGTTGTA 60.270 47.619 0.00 0.00 0.00 2.41
1424 2516 1.270412 TGTACTCCCGACGCAAATGTT 60.270 47.619 0.00 0.00 0.00 2.71
1425 2517 0.319083 TGTACTCCCGACGCAAATGT 59.681 50.000 0.00 0.00 0.00 2.71
1429 2521 1.017177 GCAATGTACTCCCGACGCAA 61.017 55.000 0.00 0.00 0.00 4.85
1430 2522 1.447140 GCAATGTACTCCCGACGCA 60.447 57.895 0.00 0.00 0.00 5.24
1431 2523 2.514013 CGCAATGTACTCCCGACGC 61.514 63.158 0.00 0.00 0.00 5.19
1432 2524 1.138047 GACGCAATGTACTCCCGACG 61.138 60.000 0.00 0.00 0.00 5.12
1433 2525 0.172803 AGACGCAATGTACTCCCGAC 59.827 55.000 0.00 0.00 0.00 4.79
1477 3502 4.593206 AGACAGTTGATCAGGTTCTTGGTA 59.407 41.667 0.00 0.00 0.00 3.25
1504 3529 2.969821 AACAGGCTGGATGGTTTGTA 57.030 45.000 20.34 0.00 0.00 2.41
1525 3754 3.955650 AGTTACCAAGTGCGTGTATCT 57.044 42.857 0.00 0.00 0.00 1.98
1527 3756 5.278120 GGAAAAAGTTACCAAGTGCGTGTAT 60.278 40.000 0.00 0.00 0.00 2.29
1532 3761 2.621526 AGGGAAAAAGTTACCAAGTGCG 59.378 45.455 0.00 0.00 40.77 5.34
1533 3762 3.005472 GGAGGGAAAAAGTTACCAAGTGC 59.995 47.826 0.00 0.00 40.77 4.40
1534 3763 4.470602 AGGAGGGAAAAAGTTACCAAGTG 58.529 43.478 0.00 0.00 40.77 3.16
1535 3764 4.808767 AGGAGGGAAAAAGTTACCAAGT 57.191 40.909 0.00 0.00 40.77 3.16
1536 3765 6.719829 ACAATAGGAGGGAAAAAGTTACCAAG 59.280 38.462 0.00 0.00 40.77 3.61
1538 3767 6.208840 ACAATAGGAGGGAAAAAGTTACCA 57.791 37.500 0.00 0.00 40.77 3.25
1539 3768 7.121759 GGTTACAATAGGAGGGAAAAAGTTACC 59.878 40.741 0.00 0.00 38.15 2.85
1540 3769 7.666804 TGGTTACAATAGGAGGGAAAAAGTTAC 59.333 37.037 0.00 0.00 0.00 2.50
1541 3770 7.757611 TGGTTACAATAGGAGGGAAAAAGTTA 58.242 34.615 0.00 0.00 0.00 2.24
1542 3771 6.616577 TGGTTACAATAGGAGGGAAAAAGTT 58.383 36.000 0.00 0.00 0.00 2.66
1543 3772 6.208840 TGGTTACAATAGGAGGGAAAAAGT 57.791 37.500 0.00 0.00 0.00 2.66
1544 3773 6.321435 GGATGGTTACAATAGGAGGGAAAAAG 59.679 42.308 0.00 0.00 0.00 2.27
1546 3775 5.254267 TGGATGGTTACAATAGGAGGGAAAA 59.746 40.000 0.00 0.00 0.00 2.29
1548 3777 4.376223 TGGATGGTTACAATAGGAGGGAA 58.624 43.478 0.00 0.00 0.00 3.97
1549 3778 4.015617 TGGATGGTTACAATAGGAGGGA 57.984 45.455 0.00 0.00 0.00 4.20
1551 3780 4.997395 CGAATGGATGGTTACAATAGGAGG 59.003 45.833 0.00 0.00 0.00 4.30
1552 3781 5.696724 GTCGAATGGATGGTTACAATAGGAG 59.303 44.000 0.00 0.00 0.00 3.69
1553 3782 5.607477 GTCGAATGGATGGTTACAATAGGA 58.393 41.667 0.00 0.00 0.00 2.94
1554 3783 4.447724 CGTCGAATGGATGGTTACAATAGG 59.552 45.833 0.00 0.00 0.00 2.57
1555 3784 5.286438 TCGTCGAATGGATGGTTACAATAG 58.714 41.667 0.00 0.00 32.24 1.73
1556 3785 5.265350 TCGTCGAATGGATGGTTACAATA 57.735 39.130 0.00 0.00 32.24 1.90
1557 3786 4.131649 TCGTCGAATGGATGGTTACAAT 57.868 40.909 0.00 0.00 32.24 2.71
1558 3787 3.596310 TCGTCGAATGGATGGTTACAA 57.404 42.857 0.00 0.00 32.24 2.41
1560 3789 3.247648 CCAATCGTCGAATGGATGGTTAC 59.752 47.826 22.49 0.00 34.77 2.50
1561 3790 3.118555 ACCAATCGTCGAATGGATGGTTA 60.119 43.478 31.21 0.00 34.77 2.85
1562 3791 2.288666 CCAATCGTCGAATGGATGGTT 58.711 47.619 22.49 0.00 34.77 3.67
1563 3792 1.209504 ACCAATCGTCGAATGGATGGT 59.790 47.619 31.21 20.49 34.77 3.55
1566 3795 5.723672 ATAGTACCAATCGTCGAATGGAT 57.276 39.130 31.21 19.46 34.77 3.41
1568 3797 4.381863 CGAATAGTACCAATCGTCGAATGG 59.618 45.833 24.63 24.63 38.48 3.16
1569 3798 5.209977 TCGAATAGTACCAATCGTCGAATG 58.790 41.667 0.00 0.06 36.70 2.67
1571 3800 4.880886 TCGAATAGTACCAATCGTCGAA 57.119 40.909 0.00 0.00 36.70 3.71
1572 3801 4.880886 TTCGAATAGTACCAATCGTCGA 57.119 40.909 0.00 0.00 36.70 4.20
1573 3802 6.506464 AATTTCGAATAGTACCAATCGTCG 57.494 37.500 0.00 3.63 36.70 5.12
1575 3804 7.762615 TCTGAAATTTCGAATAGTACCAATCGT 59.237 33.333 13.34 0.00 36.70 3.73
1576 3805 8.056571 GTCTGAAATTTCGAATAGTACCAATCG 58.943 37.037 13.34 5.67 36.67 3.34
1577 3806 9.099454 AGTCTGAAATTTCGAATAGTACCAATC 57.901 33.333 13.34 0.00 0.00 2.67
1578 3807 9.449719 AAGTCTGAAATTTCGAATAGTACCAAT 57.550 29.630 13.34 0.00 0.00 3.16
1688 3958 3.816091 TCATGGTTAATTGCGTTCAACG 58.184 40.909 5.28 5.28 45.88 4.10
1703 3975 8.984855 AGATAATTCCACATTCAAATTCATGGT 58.015 29.630 0.00 0.00 0.00 3.55
1766 4038 1.072666 CGAGCAGAAAATTTGCCGCC 61.073 55.000 0.41 0.00 42.48 6.13
1772 4044 2.887152 AGAACTGGCGAGCAGAAAATTT 59.113 40.909 0.00 0.00 0.00 1.82
1773 4045 2.508526 AGAACTGGCGAGCAGAAAATT 58.491 42.857 0.00 0.00 0.00 1.82
1774 4046 2.191128 AGAACTGGCGAGCAGAAAAT 57.809 45.000 0.00 0.00 0.00 1.82
1775 4047 2.831685 TAGAACTGGCGAGCAGAAAA 57.168 45.000 0.00 0.00 0.00 2.29
1777 4049 3.024547 AGTATAGAACTGGCGAGCAGAA 58.975 45.455 0.00 0.00 36.93 3.02
1779 4051 4.569761 TTAGTATAGAACTGGCGAGCAG 57.430 45.455 0.00 0.00 39.39 4.24
1780 4052 4.994907 TTTAGTATAGAACTGGCGAGCA 57.005 40.909 0.00 0.00 39.39 4.26
1781 4053 5.589192 TCTTTTAGTATAGAACTGGCGAGC 58.411 41.667 0.00 0.00 39.39 5.03
1783 4055 6.040878 GCTTCTTTTAGTATAGAACTGGCGA 58.959 40.000 0.00 0.00 39.39 5.54
1784 4056 5.810587 TGCTTCTTTTAGTATAGAACTGGCG 59.189 40.000 0.00 0.00 39.39 5.69
1786 4058 8.723942 ACATGCTTCTTTTAGTATAGAACTGG 57.276 34.615 0.00 0.00 39.39 4.00
1816 4094 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1817 4095 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1818 4096 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1820 4098 5.643777 AGATTGAGACACTTATTTTGGGACG 59.356 40.000 0.00 0.00 0.00 4.79
1823 4101 8.567285 ACTAAGATTGAGACACTTATTTTGGG 57.433 34.615 0.00 0.00 0.00 4.12
1829 4107 9.823647 CCATTGTACTAAGATTGAGACACTTAT 57.176 33.333 0.00 0.00 0.00 1.73
1831 4109 7.907389 TCCATTGTACTAAGATTGAGACACTT 58.093 34.615 0.00 0.00 0.00 3.16
1832 4110 7.482169 TCCATTGTACTAAGATTGAGACACT 57.518 36.000 0.00 0.00 0.00 3.55
1833 4111 8.547967 TTTCCATTGTACTAAGATTGAGACAC 57.452 34.615 0.00 0.00 0.00 3.67
1834 4112 9.166173 CATTTCCATTGTACTAAGATTGAGACA 57.834 33.333 0.00 0.00 0.00 3.41
1835 4113 9.167311 ACATTTCCATTGTACTAAGATTGAGAC 57.833 33.333 0.00 0.00 0.00 3.36
1839 4117 9.669353 GCATACATTTCCATTGTACTAAGATTG 57.331 33.333 0.00 0.00 32.70 2.67
1840 4118 9.407380 TGCATACATTTCCATTGTACTAAGATT 57.593 29.630 0.00 0.00 32.70 2.40
1841 4119 8.978874 TGCATACATTTCCATTGTACTAAGAT 57.021 30.769 0.00 0.00 32.70 2.40
1842 4120 8.839343 CATGCATACATTTCCATTGTACTAAGA 58.161 33.333 0.00 0.00 32.87 2.10
1845 4123 8.518430 AACATGCATACATTTCCATTGTACTA 57.482 30.769 0.00 0.00 32.87 1.82
1847 4125 9.398170 GATAACATGCATACATTTCCATTGTAC 57.602 33.333 0.00 0.00 32.87 2.90
1848 4126 9.353431 AGATAACATGCATACATTTCCATTGTA 57.647 29.630 0.00 0.00 32.87 2.41
1913 4377 4.832266 ACAGGAATCAAATGCCACAGTTAA 59.168 37.500 0.00 0.00 0.00 2.01
1941 4408 4.040829 TGTCAATCAGATGTCACACCTCTT 59.959 41.667 0.00 0.00 0.00 2.85
2210 4699 5.003804 ACTGAACAGCTTAGGTACCATTTG 58.996 41.667 15.94 7.45 0.00 2.32
2291 4850 2.306219 GAGGGAATGGGGCTCCTAATAC 59.694 54.545 3.07 0.00 33.11 1.89
2305 4864 1.847088 GAGCTGGTAAAGGGAGGGAAT 59.153 52.381 0.00 0.00 0.00 3.01
2306 4865 1.203440 AGAGCTGGTAAAGGGAGGGAA 60.203 52.381 0.00 0.00 0.00 3.97
2318 4877 1.683385 GAAGGCAAAACAAGAGCTGGT 59.317 47.619 0.00 0.00 0.00 4.00
2412 5300 5.184864 CACATAGCAACCAAGTCCCAAAATA 59.815 40.000 0.00 0.00 0.00 1.40
2475 5363 3.682858 CGCGATTCTAACAAGGAGGAAAA 59.317 43.478 0.00 0.00 0.00 2.29
2477 5365 2.232941 ACGCGATTCTAACAAGGAGGAA 59.767 45.455 15.93 0.00 0.00 3.36
2478 5366 1.822990 ACGCGATTCTAACAAGGAGGA 59.177 47.619 15.93 0.00 0.00 3.71
2479 5367 1.927174 CACGCGATTCTAACAAGGAGG 59.073 52.381 15.93 0.00 0.00 4.30
2480 5368 1.324736 GCACGCGATTCTAACAAGGAG 59.675 52.381 15.93 0.00 0.00 3.69
2481 5369 1.067142 AGCACGCGATTCTAACAAGGA 60.067 47.619 15.93 0.00 0.00 3.36
2482 5370 1.359848 AGCACGCGATTCTAACAAGG 58.640 50.000 15.93 0.00 0.00 3.61
2531 5848 0.324943 CCTCCTTCAAAAGCTCCGGA 59.675 55.000 2.93 2.93 0.00 5.14
2605 5922 3.505184 CCATTGCGGCCGTGTACC 61.505 66.667 28.70 10.19 0.00 3.34
2619 5936 4.263243 GCACTCAAGGATAATAGGCTCCAT 60.263 45.833 0.00 0.00 33.75 3.41
2759 6076 1.548357 GGCTGAGGAAGTCTCCAGCA 61.548 60.000 19.33 4.88 45.24 4.41
2780 6097 0.690762 ACACATGGTTAAGGTCCGCT 59.309 50.000 0.00 0.00 0.00 5.52
2843 6160 0.172352 TCACATGCAGATACGCGTCA 59.828 50.000 18.63 7.72 33.35 4.35
2854 6171 1.180456 CCACCAGGCTTTCACATGCA 61.180 55.000 0.00 0.00 0.00 3.96
2990 6307 3.056821 CACCTAGACAGACAAACATCGGA 60.057 47.826 0.00 0.00 0.00 4.55
3011 6329 8.605746 GTTATCTAATTATTACACCAACACGCA 58.394 33.333 0.00 0.00 0.00 5.24
3020 6338 6.128742 CGCGGGGTGTTATCTAATTATTACAC 60.129 42.308 0.00 0.00 38.21 2.90
3145 6479 8.754991 TTTTCTAACACATGAAAAACCCTCTA 57.245 30.769 0.00 0.00 38.65 2.43
3195 6529 3.657398 AGCCTCCACATCATCAATCAA 57.343 42.857 0.00 0.00 0.00 2.57
3230 6565 1.722751 GCGCTGTTGTTGTGATTCTCG 60.723 52.381 0.00 0.00 0.00 4.04
3233 6568 2.046313 CTTGCGCTGTTGTTGTGATTC 58.954 47.619 9.73 0.00 0.00 2.52
3236 6571 1.063972 GCTTGCGCTGTTGTTGTGA 59.936 52.632 9.73 0.00 0.00 3.58
3323 6672 2.585330 TGCAAGGAGAGAAAATGCACA 58.415 42.857 0.00 0.00 41.67 4.57
3372 6722 2.354805 GCTTCGTCTATTGGGAGGTTGT 60.355 50.000 0.00 0.00 0.00 3.32
3390 6740 1.635487 TCATTCCAACCTAGCAGGCTT 59.365 47.619 0.00 0.00 39.63 4.35
3397 6747 4.848357 ACCTGAACATCATTCCAACCTAG 58.152 43.478 0.00 0.00 0.00 3.02
3399 6749 3.814504 ACCTGAACATCATTCCAACCT 57.185 42.857 0.00 0.00 0.00 3.50
3401 6751 5.343249 GCATTACCTGAACATCATTCCAAC 58.657 41.667 0.00 0.00 0.00 3.77
3402 6752 4.402155 GGCATTACCTGAACATCATTCCAA 59.598 41.667 0.00 0.00 34.51 3.53
3403 6753 3.953612 GGCATTACCTGAACATCATTCCA 59.046 43.478 0.00 0.00 34.51 3.53
3404 6754 4.574599 GGCATTACCTGAACATCATTCC 57.425 45.455 0.00 0.00 34.51 3.01
3428 6783 4.081862 TGTTTTATCGTAGGGTGGAGACAG 60.082 45.833 0.00 0.00 44.46 3.51
3480 6835 9.398538 GGGTGTTATCTAATTATTACCACACAA 57.601 33.333 13.05 0.00 34.88 3.33
3485 6840 9.856162 GAAAGGGGTGTTATCTAATTATTACCA 57.144 33.333 0.00 0.00 0.00 3.25
3490 6845 8.582891 AGGAGAAAGGGGTGTTATCTAATTAT 57.417 34.615 0.00 0.00 0.00 1.28
3491 6846 7.849904 AGAGGAGAAAGGGGTGTTATCTAATTA 59.150 37.037 0.00 0.00 0.00 1.40
3492 6847 6.678857 AGAGGAGAAAGGGGTGTTATCTAATT 59.321 38.462 0.00 0.00 0.00 1.40
3496 6851 4.081695 AGAGGAGAAAGGGGTGTTATCT 57.918 45.455 0.00 0.00 0.00 1.98
3497 6852 4.225267 TGAAGAGGAGAAAGGGGTGTTATC 59.775 45.833 0.00 0.00 0.00 1.75
3498 6853 4.019231 GTGAAGAGGAGAAAGGGGTGTTAT 60.019 45.833 0.00 0.00 0.00 1.89
3499 6854 3.326880 GTGAAGAGGAGAAAGGGGTGTTA 59.673 47.826 0.00 0.00 0.00 2.41
3500 6855 2.106684 GTGAAGAGGAGAAAGGGGTGTT 59.893 50.000 0.00 0.00 0.00 3.32
3501 6856 1.700186 GTGAAGAGGAGAAAGGGGTGT 59.300 52.381 0.00 0.00 0.00 4.16
3502 6857 1.699634 TGTGAAGAGGAGAAAGGGGTG 59.300 52.381 0.00 0.00 0.00 4.61
3503 6858 2.118403 TGTGAAGAGGAGAAAGGGGT 57.882 50.000 0.00 0.00 0.00 4.95
3504 6859 3.508845 TTTGTGAAGAGGAGAAAGGGG 57.491 47.619 0.00 0.00 0.00 4.79
3514 6869 7.693951 GTGGTTGATCGATTATTTTGTGAAGAG 59.306 37.037 0.00 0.00 0.00 2.85
3531 6886 6.949352 AATCATAGGATTGTGTGGTTGATC 57.051 37.500 1.00 0.00 42.10 2.92
3606 6961 0.687354 ATGGTGTCAAGCCTCTTCGT 59.313 50.000 0.00 0.00 0.00 3.85
3651 7034 4.395959 AGAGGCCATGCAATGTTAATTG 57.604 40.909 5.01 0.00 44.81 2.32
3652 7035 5.180271 CAAAGAGGCCATGCAATGTTAATT 58.820 37.500 5.01 0.00 44.81 1.40
3653 7036 4.383335 CCAAAGAGGCCATGCAATGTTAAT 60.383 41.667 5.01 0.00 44.81 1.40
3654 7037 3.055963 CCAAAGAGGCCATGCAATGTTAA 60.056 43.478 5.01 0.00 44.81 2.01
3655 7038 2.496871 CCAAAGAGGCCATGCAATGTTA 59.503 45.455 5.01 0.00 44.81 2.41
3656 7039 1.276989 CCAAAGAGGCCATGCAATGTT 59.723 47.619 5.01 0.00 44.81 2.71
3657 7040 0.899720 CCAAAGAGGCCATGCAATGT 59.100 50.000 5.01 0.00 44.81 2.71
3658 7041 3.752796 CCAAAGAGGCCATGCAATG 57.247 52.632 5.01 0.00 46.21 2.82
3668 7051 3.760151 TGTCAAATCTCATGCCAAAGAGG 59.240 43.478 0.00 0.00 41.84 3.69
3669 7052 4.380233 GGTGTCAAATCTCATGCCAAAGAG 60.380 45.833 0.00 0.00 0.00 2.85
3670 7053 3.507233 GGTGTCAAATCTCATGCCAAAGA 59.493 43.478 0.00 0.00 0.00 2.52
3671 7054 3.256383 TGGTGTCAAATCTCATGCCAAAG 59.744 43.478 0.00 0.00 0.00 2.77
3672 7055 3.229293 TGGTGTCAAATCTCATGCCAAA 58.771 40.909 0.00 0.00 0.00 3.28
3673 7056 2.874014 TGGTGTCAAATCTCATGCCAA 58.126 42.857 0.00 0.00 0.00 4.52
3674 7057 2.583024 TGGTGTCAAATCTCATGCCA 57.417 45.000 0.00 0.00 0.00 4.92
3675 7058 3.004106 GCTATGGTGTCAAATCTCATGCC 59.996 47.826 0.00 0.00 0.00 4.40
3676 7059 3.628942 TGCTATGGTGTCAAATCTCATGC 59.371 43.478 0.00 0.00 0.00 4.06
3677 7060 5.575957 GTTGCTATGGTGTCAAATCTCATG 58.424 41.667 0.00 0.00 0.00 3.07
3678 7061 4.333649 CGTTGCTATGGTGTCAAATCTCAT 59.666 41.667 0.00 0.00 0.00 2.90
3679 7062 3.684305 CGTTGCTATGGTGTCAAATCTCA 59.316 43.478 0.00 0.00 0.00 3.27
3680 7063 3.485877 GCGTTGCTATGGTGTCAAATCTC 60.486 47.826 0.00 0.00 0.00 2.75
3681 7064 2.420022 GCGTTGCTATGGTGTCAAATCT 59.580 45.455 0.00 0.00 0.00 2.40
3682 7065 2.161410 TGCGTTGCTATGGTGTCAAATC 59.839 45.455 0.00 0.00 0.00 2.17
3683 7066 2.158559 TGCGTTGCTATGGTGTCAAAT 58.841 42.857 0.00 0.00 0.00 2.32
3684 7067 1.598882 TGCGTTGCTATGGTGTCAAA 58.401 45.000 0.00 0.00 0.00 2.69
3685 7068 1.468127 CATGCGTTGCTATGGTGTCAA 59.532 47.619 0.00 0.00 0.00 3.18
3686 7069 1.085893 CATGCGTTGCTATGGTGTCA 58.914 50.000 0.00 0.00 0.00 3.58
3687 7070 1.328680 CTCATGCGTTGCTATGGTGTC 59.671 52.381 0.00 0.00 0.00 3.67
3688 7071 1.372582 CTCATGCGTTGCTATGGTGT 58.627 50.000 0.00 0.00 0.00 4.16
3689 7072 0.659427 CCTCATGCGTTGCTATGGTG 59.341 55.000 0.00 0.00 0.00 4.17
3690 7073 0.253044 ACCTCATGCGTTGCTATGGT 59.747 50.000 0.00 0.00 0.00 3.55
3691 7074 1.382522 AACCTCATGCGTTGCTATGG 58.617 50.000 0.00 0.00 0.00 2.74
3692 7075 2.419673 TCAAACCTCATGCGTTGCTATG 59.580 45.455 0.00 0.00 0.00 2.23
3693 7076 2.420022 GTCAAACCTCATGCGTTGCTAT 59.580 45.455 0.00 0.00 0.00 2.97
3694 7077 1.804151 GTCAAACCTCATGCGTTGCTA 59.196 47.619 0.00 0.00 0.00 3.49
3695 7078 0.593128 GTCAAACCTCATGCGTTGCT 59.407 50.000 0.00 0.00 0.00 3.91
3696 7079 0.310543 TGTCAAACCTCATGCGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
3697 7080 1.334960 GGTGTCAAACCTCATGCGTTG 60.335 52.381 0.00 0.00 46.55 4.10
3698 7081 0.951558 GGTGTCAAACCTCATGCGTT 59.048 50.000 0.00 0.00 46.55 4.84
3699 7082 2.629002 GGTGTCAAACCTCATGCGT 58.371 52.632 0.00 0.00 46.55 5.24
3745 7153 1.929169 CTCTCTTCATCGCGCATCAAA 59.071 47.619 8.75 0.00 0.00 2.69
3766 7174 4.022416 TCATGCCTTGTTATGGTGTCAAAC 60.022 41.667 0.00 0.00 0.00 2.93
3767 7175 4.148079 TCATGCCTTGTTATGGTGTCAAA 58.852 39.130 0.00 0.00 0.00 2.69
3768 7176 3.758023 CTCATGCCTTGTTATGGTGTCAA 59.242 43.478 0.00 0.00 0.00 3.18
3769 7177 3.346315 CTCATGCCTTGTTATGGTGTCA 58.654 45.455 0.00 0.00 0.00 3.58
3770 7178 2.684881 CCTCATGCCTTGTTATGGTGTC 59.315 50.000 0.00 0.00 0.00 3.67
3771 7179 2.041620 ACCTCATGCCTTGTTATGGTGT 59.958 45.455 0.00 0.00 0.00 4.16
3772 7180 2.726821 ACCTCATGCCTTGTTATGGTG 58.273 47.619 0.00 0.00 0.00 4.17
3773 7181 3.456380 AACCTCATGCCTTGTTATGGT 57.544 42.857 0.00 0.00 0.00 3.55
3774 7182 3.763360 TCAAACCTCATGCCTTGTTATGG 59.237 43.478 0.00 0.00 0.00 2.74
3775 7183 4.672542 CGTCAAACCTCATGCCTTGTTATG 60.673 45.833 0.00 0.00 0.00 1.90
3776 7184 3.440173 CGTCAAACCTCATGCCTTGTTAT 59.560 43.478 0.00 0.00 0.00 1.89
3777 7185 2.811431 CGTCAAACCTCATGCCTTGTTA 59.189 45.455 0.00 0.00 0.00 2.41
3778 7186 1.608590 CGTCAAACCTCATGCCTTGTT 59.391 47.619 0.00 0.00 0.00 2.83
3779 7187 1.238439 CGTCAAACCTCATGCCTTGT 58.762 50.000 0.00 0.00 0.00 3.16
3780 7188 1.197721 GACGTCAAACCTCATGCCTTG 59.802 52.381 11.55 0.00 0.00 3.61
3781 7189 1.072331 AGACGTCAAACCTCATGCCTT 59.928 47.619 19.50 0.00 0.00 4.35
3782 7190 0.687354 AGACGTCAAACCTCATGCCT 59.313 50.000 19.50 0.00 0.00 4.75
3783 7191 2.271800 CTAGACGTCAAACCTCATGCC 58.728 52.381 19.50 0.00 0.00 4.40
3784 7192 2.960819 ACTAGACGTCAAACCTCATGC 58.039 47.619 19.50 0.00 0.00 4.06
3785 7193 4.556233 TCAACTAGACGTCAAACCTCATG 58.444 43.478 19.50 5.70 0.00 3.07
3786 7194 4.866508 TCAACTAGACGTCAAACCTCAT 57.133 40.909 19.50 0.00 0.00 2.90
3787 7195 4.556233 CATCAACTAGACGTCAAACCTCA 58.444 43.478 19.50 0.00 0.00 3.86
3788 7196 3.368236 GCATCAACTAGACGTCAAACCTC 59.632 47.826 19.50 0.00 0.00 3.85
3801 7209 4.440663 CCTCTCTTCATCGTGCATCAACTA 60.441 45.833 0.00 0.00 0.00 2.24
3807 7215 3.005554 CAAACCTCTCTTCATCGTGCAT 58.994 45.455 0.00 0.00 0.00 3.96
3811 7219 3.555168 GGTGTCAAACCTCTCTTCATCGT 60.555 47.826 0.00 0.00 46.55 3.73
3847 7255 3.266510 ACTCAGACACAACAAAGAGCA 57.733 42.857 0.00 0.00 0.00 4.26
3863 7271 2.875672 GCTATGCCACCTCAACAACTCA 60.876 50.000 0.00 0.00 0.00 3.41
3864 7272 1.740025 GCTATGCCACCTCAACAACTC 59.260 52.381 0.00 0.00 0.00 3.01
3865 7273 1.073763 TGCTATGCCACCTCAACAACT 59.926 47.619 0.00 0.00 0.00 3.16
3866 7274 1.533625 TGCTATGCCACCTCAACAAC 58.466 50.000 0.00 0.00 0.00 3.32
3903 7311 1.112916 TGAGCTCACACTTCGTCCCA 61.113 55.000 13.74 0.00 0.00 4.37
3911 7319 1.376424 CGGCCATTGAGCTCACACT 60.376 57.895 18.03 0.79 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.