AutoCloner

Multiple sequence alignment - TraesCS3B01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G334000	chr3B	100.000	3239	0	0	1	3239	540455798	540459036	0.000000e+00	5982.0
1	TraesCS3B01G334000	chr3D	96.292	2643	63	11	1	2638	414628271	414630883	0.000000e+00	4305.0
2	TraesCS3B01G334000	chr3D	88.153	498	35	16	2752	3237	414631257	414631742	3.630000e-159	571.0
3	TraesCS3B01G334000	chr3A	95.163	2667	79	18	1	2638	535824916	535822271	0.000000e+00	4165.0
4	TraesCS3B01G334000	chr3A	87.500	464	34	11	2771	3230	535821737	535821294	6.200000e-142	514.0
5	TraesCS3B01G334000	chr3A	95.312	64	3	0	2706	2769	535822102	535822039	5.720000e-18	102.0
6	TraesCS3B01G334000	chr3A	93.617	47	3	0	2706	2752	617479172	617479126	1.610000e-08	71.3
7	TraesCS3B01G334000	chr1D	79.891	552	102	8	1023	1573	470081112	470081655	2.340000e-106	396.0
8	TraesCS3B01G334000	chr1D	80.805	323	56	5	1926	2243	470181481	470181802	6.940000e-62	248.0
9	TraesCS3B01G334000	chr1B	77.539	699	123	16	1575	2241	652519177	652519873	1.090000e-104	390.0
10	TraesCS3B01G334000	chr1B	78.995	557	93	19	1024	1573	652467745	652468284	3.070000e-95	359.0
11	TraesCS3B01G334000	chr1B	78.804	552	103	11	1024	1573	652569981	652570520	3.070000e-95	359.0
12	TraesCS3B01G334000	chr1A	79.204	553	99	11	1024	1573	563791413	563791952	1.420000e-98	370.0
13	TraesCS3B01G334000	chr2D	83.073	384	57	5	995	1377	502574200	502574576	3.090000e-90	342.0
14	TraesCS3B01G334000	chr2D	88.462	52	4	2	2704	2754	309945402	309945452	9.700000e-06	62.1
15	TraesCS3B01G334000	chr2B	82.552	384	59	6	995	1377	590228442	590228818	6.700000e-87	331.0
16	TraesCS3B01G334000	chr2A	82.383	386	56	11	995	1377	648027284	648027660	3.120000e-85	326.0
17	TraesCS3B01G334000	chr7A	95.556	45	2	0	2707	2751	52673320	52673276	4.480000e-09	73.1
18	TraesCS3B01G334000	chr6A	93.617	47	3	0	2707	2753	574263747	574263793	1.610000e-08	71.3
19	TraesCS3B01G334000	chr5B	93.750	48	2	1	2707	2753	391300004	391299957	1.610000e-08	71.3
20	TraesCS3B01G334000	chr7B	93.750	48	0	3	2705	2752	91780456	91780500	5.800000e-08	69.4
21	TraesCS3B01G334000	chr6B	92.000	50	2	1	2706	2753	549621326	549621277	5.800000e-08	69.4
22	TraesCS3B01G334000	chr4B	97.436	39	1	0	2714	2752	501250769	501250731	2.090000e-07	67.6
23	TraesCS3B01G334000	chr4D	100.000	28	0	0	2654	2681	13604956	13604929	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G334000	chr3B	540455798	540459036	3238	False	5982.000000	5982	100.000000	1	3239	1	chr3B.!!$F1	3238
1	TraesCS3B01G334000	chr3D	414628271	414631742	3471	False	2438.000000	4305	92.222500	1	3237	2	chr3D.!!$F1	3236
2	TraesCS3B01G334000	chr3A	535821294	535824916	3622	True	1593.666667	4165	92.658333	1	3230	3	chr3A.!!$R2	3229
3	TraesCS3B01G334000	chr1D	470081112	470081655	543	False	396.000000	396	79.891000	1023	1573	1	chr1D.!!$F1	550
4	TraesCS3B01G334000	chr1B	652519177	652519873	696	False	390.000000	390	77.539000	1575	2241	1	chr1B.!!$F2	666
5	TraesCS3B01G334000	chr1B	652467745	652468284	539	False	359.000000	359	78.995000	1024	1573	1	chr1B.!!$F1	549
6	TraesCS3B01G334000	chr1B	652569981	652570520	539	False	359.000000	359	78.804000	1024	1573	1	chr1B.!!$F3	549
7	TraesCS3B01G334000	chr1A	563791413	563791952	539	False	370.000000	370	79.204000	1024	1573	1	chr1A.!!$F1	549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
960	1008	0.250124	TTGGTCGGTTGCGATGAACT	60.25	50.0	0.0	0.0	0.0	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2645	2724	0.035458	AACGAAGGGAGCAAGTGGAG	59.965	55.0	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
308	309	2.047844	CTCCAGCACGGTGTCCAG	60.048	66.667	10.24	0.00	35.57	3.86
309	310	4.314440	TCCAGCACGGTGTCCAGC	62.314	66.667	10.24	0.00	35.57	4.85
310	311	4.320456	CCAGCACGGTGTCCAGCT	62.320	66.667	10.24	0.00	35.41	4.24
434	449	1.446966	GCGGAACAGACAGGAGAGC	60.447	63.158	0.00	0.00	0.00	4.09
437	452	1.251527	GGAACAGACAGGAGAGCGGA	61.252	60.000	0.00	0.00	0.00	5.54
451	466	0.610687	AGCGGAAGGGAGAGAAACAG	59.389	55.000	0.00	0.00	0.00	3.16
650	697	0.447801	CGGCCCATTTCTCGAAACAG	59.552	55.000	0.00	0.00	32.51	3.16
695	742	4.035208	CAGACCTTTGTGTTCCACTACAAC	59.965	45.833	0.00	0.00	36.61	3.32
698	745	4.157105	ACCTTTGTGTTCCACTACAACAAC	59.843	41.667	0.00	0.00	36.61	3.32
831	878	2.041922	ATCTGGTGCCCGCCTCTA	60.042	61.111	0.00	0.00	0.00	2.43
894	941	0.254747	CGGTGGTGGAATGGTGGTAT	59.745	55.000	0.00	0.00	0.00	2.73
936	984	3.106407	AAGTGCTCGACGCTTCGC	61.106	61.111	7.88	0.00	46.18	4.70
960	1008	0.250124	TTGGTCGGTTGCGATGAACT	60.250	50.000	0.00	0.00	0.00	3.01
964	1012	1.135199	GTCGGTTGCGATGAACTAGGA	60.135	52.381	0.00	0.00	0.00	2.94
965	1013	1.754803	TCGGTTGCGATGAACTAGGAT	59.245	47.619	0.00	0.00	0.00	3.24
966	1014	2.128035	CGGTTGCGATGAACTAGGATC	58.872	52.381	0.00	0.00	0.00	3.36
967	1015	2.223829	CGGTTGCGATGAACTAGGATCT	60.224	50.000	0.00	0.00	0.00	2.75
968	1016	3.385577	GGTTGCGATGAACTAGGATCTC	58.614	50.000	0.00	0.00	0.00	2.75
1647	1695	5.548250	GCGTATGACAAGTGTAAGCTTTAC	58.452	41.667	3.20	4.75	0.00	2.01
1659	1707	1.739067	AGCTTTACGAAGACATGGCC	58.261	50.000	0.00	0.00	34.71	5.36
1726	1774	0.890542	TGTGGTGAACATCAGCCAGC	60.891	55.000	7.05	0.00	43.72	4.85
1752	1800	2.687566	ACCGGGGATCCACAGGTC	60.688	66.667	20.64	0.17	0.00	3.85
1952	2027	1.666189	GGTATTCGAGGCTGACTTTGC	59.334	52.381	0.00	0.00	0.00	3.68
2055	2130	0.618458	TGTCTCAGTATGGGTTGCCC	59.382	55.000	0.00	0.00	45.71	5.36
2348	2426	8.665643	TTAGTATGTATCCAATTTAACCACCG	57.334	34.615	0.00	0.00	0.00	4.94
2430	2509	1.473434	CGTGCCTGGGAAAGATCCTAC	60.473	57.143	0.00	0.00	45.77	3.18
2476	2555	6.094603	GTCAATTGTCTTAGCATGGTGATCTT	59.905	38.462	7.89	0.00	0.00	2.40
2546	2625	2.230660	GAACCTACTGCTGCCTTTTGT	58.769	47.619	0.00	0.00	0.00	2.83
2639	2718	9.311916	GTGGATCATGTAGATGAGATAATTAGC	57.688	37.037	8.68	0.00	42.01	3.09
2640	2719	9.039165	TGGATCATGTAGATGAGATAATTAGCA	57.961	33.333	8.68	0.00	42.01	3.49
2641	2720	9.311916	GGATCATGTAGATGAGATAATTAGCAC	57.688	37.037	8.68	0.00	42.01	4.40
2644	2723	9.702494	TCATGTAGATGAGATAATTAGCACTTG	57.298	33.333	3.17	0.83	33.40	3.16
2645	2724	7.953158	TGTAGATGAGATAATTAGCACTTGC	57.047	36.000	3.17	0.00	42.49	4.01
2659	2783	1.377994	CTTGCTCCACTTGCTCCCT	59.622	57.895	0.00	0.00	0.00	4.20
2681	2808	8.479689	TCCCTTCGTTCACAAATATAAGATGTA	58.520	33.333	0.00	0.00	0.00	2.29
2683	2810	9.314321	CCTTCGTTCACAAATATAAGATGTACT	57.686	33.333	0.00	0.00	0.00	2.73
2722	2902	5.535783	TCGGACGTATACTGAAATATCCCAA	59.464	40.000	0.56	0.00	0.00	4.12
2766	3105	3.380637	AGGGAGTAGTTACGTGCATAGTG	59.619	47.826	0.00	0.00	0.00	2.74
2791	3431	4.796312	GCTTTTTGTGCAGTCGAGTTTTTA	59.204	37.500	0.00	0.00	0.00	1.52
2820	3460	4.957684	ATACCCAGTACTGAATAGGCAC	57.042	45.455	24.68	0.00	0.00	5.01
2876	3523	2.279935	TCCCTACGGCACAAAATTGT	57.720	45.000	0.00	0.00	43.36	2.71
2882	3529	1.202475	ACGGCACAAAATTGTTGGGAC	60.202	47.619	0.00	0.00	39.91	4.46
2921	3569	0.669318	TGACGGATTCAGCGTTGTCC	60.669	55.000	0.00	0.00	0.00	4.02
2990	3638	2.471862	GCTGAAGAGCTTGCTAATGC	57.528	50.000	0.00	0.00	42.52	3.56
3047	3695	6.790232	AGCTAGCTAGACTTTCAGAATCTT	57.210	37.500	25.15	0.00	0.00	2.40
3089	3749	5.547465	TGAGCTTAGACTTTTTCCGATTCA	58.453	37.500	0.00	0.00	0.00	2.57
3090	3750	6.173339	TGAGCTTAGACTTTTTCCGATTCAT	58.827	36.000	0.00	0.00	0.00	2.57
3098	3758	6.040391	AGACTTTTTCCGATTCATTGTTGGAA	59.960	34.615	0.00	0.00	37.36	3.53
3105	3765	7.880160	TCCGATTCATTGTTGGAATAATCTT	57.120	32.000	0.00	0.00	35.23	2.40
3106	3766	7.706159	TCCGATTCATTGTTGGAATAATCTTG	58.294	34.615	0.00	0.00	35.23	3.02
3107	3767	7.339212	TCCGATTCATTGTTGGAATAATCTTGT	59.661	33.333	0.00	0.00	35.23	3.16
3108	3768	7.433131	CCGATTCATTGTTGGAATAATCTTGTG	59.567	37.037	0.00	0.00	35.23	3.33
3109	3769	7.043854	CGATTCATTGTTGGAATAATCTTGTGC	60.044	37.037	0.00	0.00	35.23	4.57
3110	3770	6.587206	TCATTGTTGGAATAATCTTGTGCA	57.413	33.333	0.00	0.00	0.00	4.57
3111	3771	7.172868	TCATTGTTGGAATAATCTTGTGCAT	57.827	32.000	0.00	0.00	0.00	3.96
3112	3772	7.259882	TCATTGTTGGAATAATCTTGTGCATC	58.740	34.615	0.00	0.00	0.00	3.91
3113	3773	6.587206	TTGTTGGAATAATCTTGTGCATCA	57.413	33.333	0.00	0.00	0.00	3.07
3114	3774	6.198650	TGTTGGAATAATCTTGTGCATCAG	57.801	37.500	0.00	0.00	0.00	2.90
3131	3791	1.546029	TCAGGACAATGACCTCGACAG	59.454	52.381	0.32	0.00	35.35	3.51
3132	3792	0.898320	AGGACAATGACCTCGACAGG	59.102	55.000	0.00	0.00	46.87	4.00
3134	3794	0.608640	GACAATGACCTCGACAGGGT	59.391	55.000	0.00	0.00	45.53	4.34
3135	3795	1.002087	GACAATGACCTCGACAGGGTT	59.998	52.381	0.00	0.00	45.53	4.11
3136	3796	1.002087	ACAATGACCTCGACAGGGTTC	59.998	52.381	0.00	0.00	45.53	3.62
3137	3797	1.276421	CAATGACCTCGACAGGGTTCT	59.724	52.381	0.00	0.00	45.53	3.01
3138	3798	2.496070	CAATGACCTCGACAGGGTTCTA	59.504	50.000	0.00	0.00	45.53	2.10
3139	3799	2.297698	TGACCTCGACAGGGTTCTAA	57.702	50.000	0.00	0.00	45.53	2.10
3140	3800	1.891150	TGACCTCGACAGGGTTCTAAC	59.109	52.381	0.00	0.00	45.53	2.34
3145	3805	4.015084	CCTCGACAGGGTTCTAACTTCTA	58.985	47.826	0.00	0.00	35.89	2.10
3214	3874	3.973206	TCAACCGAACCACTGACATAT	57.027	42.857	0.00	0.00	0.00	1.78
3216	3876	4.751060	TCAACCGAACCACTGACATATAC	58.249	43.478	0.00	0.00	0.00	1.47
3217	3877	4.221041	TCAACCGAACCACTGACATATACA	59.779	41.667	0.00	0.00	0.00	2.29
3218	3878	4.811969	ACCGAACCACTGACATATACAA	57.188	40.909	0.00	0.00	0.00	2.41
3221	3881	5.998981	ACCGAACCACTGACATATACAAAAA	59.001	36.000	0.00	0.00	0.00	1.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	1.404843	GACTCCTCCATCGTAAGCCT	58.595	55.000	0.00	0.00	37.18	4.58
309	310	4.477975	GACCGCGACGACTCCCAG	62.478	72.222	8.23	0.00	0.00	4.45
413	428	1.112916	TCTCCTGTCTGTTCCGCACA	61.113	55.000	0.00	0.00	0.00	4.57
414	429	0.389166	CTCTCCTGTCTGTTCCGCAC	60.389	60.000	0.00	0.00	0.00	5.34
415	430	1.967535	CTCTCCTGTCTGTTCCGCA	59.032	57.895	0.00	0.00	0.00	5.69
416	431	1.446966	GCTCTCCTGTCTGTTCCGC	60.447	63.158	0.00	0.00	0.00	5.54
417	432	1.153939	CGCTCTCCTGTCTGTTCCG	60.154	63.158	0.00	0.00	0.00	4.30
418	433	1.216710	CCGCTCTCCTGTCTGTTCC	59.783	63.158	0.00	0.00	0.00	3.62
419	434	0.603569	TTCCGCTCTCCTGTCTGTTC	59.396	55.000	0.00	0.00	0.00	3.18
420	435	0.605589	CTTCCGCTCTCCTGTCTGTT	59.394	55.000	0.00	0.00	0.00	3.16
421	436	1.254284	CCTTCCGCTCTCCTGTCTGT	61.254	60.000	0.00	0.00	0.00	3.41
422	437	1.515020	CCTTCCGCTCTCCTGTCTG	59.485	63.158	0.00	0.00	0.00	3.51
434	449	0.250513	CCCTGTTTCTCTCCCTTCCG	59.749	60.000	0.00	0.00	0.00	4.30
437	452	2.792635	CCCCCTGTTTCTCTCCCTT	58.207	57.895	0.00	0.00	0.00	3.95
491	511	0.528684	GCGTCCTGCTCCTACATGTC	60.529	60.000	0.00	0.00	41.73	3.06
492	512	1.517832	GCGTCCTGCTCCTACATGT	59.482	57.895	2.69	2.69	41.73	3.21
493	513	1.227380	GGCGTCCTGCTCCTACATG	60.227	63.158	0.00	0.00	45.43	3.21
659	706	3.695606	GTCTGCTCTGCCGGGTGA	61.696	66.667	2.18	0.00	0.00	4.02
695	742	2.544486	GGTCTGCTCTGCCTTTTTGTTG	60.544	50.000	0.00	0.00	0.00	3.33
698	745	0.600057	GGGTCTGCTCTGCCTTTTTG	59.400	55.000	0.00	0.00	0.00	2.44
831	878	1.115930	AGAGGCGCATACCGGATCTT	61.116	55.000	9.46	0.00	37.44	2.40
894	941	3.000819	ACGGTTCAGCGGATGGGA	61.001	61.111	3.13	0.00	0.00	4.37
936	984	4.368808	CGCAACCGACCAAGCACG	62.369	66.667	0.00	0.00	36.29	5.34
960	1008	5.913946	TCAGTAGGTGAGATGAGATCCTA	57.086	43.478	0.00	0.00	0.00	2.94
1135	1183	3.702555	GAACTGCTGCGCGACGTT	61.703	61.111	12.10	4.32	0.00	3.99
1573	1621	2.615912	GGCACATTAGAATCTGACTGGC	59.384	50.000	0.00	0.00	0.00	4.85
1659	1707	0.908198	AGAGCTTGCCCTGGTAGAAG	59.092	55.000	0.00	0.00	0.00	2.85
1726	1774	2.044053	ATCCCCGGTGCATTGGTG	60.044	61.111	0.00	0.00	0.00	4.17
1752	1800	1.248486	TGACCTGTCCAACTCGAGAG	58.752	55.000	21.68	11.02	0.00	3.20
2055	2130	4.455533	TCCAAGAAAAAGATGTGATCACCG	59.544	41.667	22.85	0.00	0.00	4.94
2063	2138	5.939883	TCGTCATCATCCAAGAAAAAGATGT	59.060	36.000	0.00	0.00	38.79	3.06
2337	2415	9.457436	AAGTTCAGATAAATACGGTGGTTAAAT	57.543	29.630	0.00	0.00	0.00	1.40
2365	2443	4.846168	TGCACCATAGTAACCACCATAA	57.154	40.909	0.00	0.00	0.00	1.90
2366	2444	4.226394	ACTTGCACCATAGTAACCACCATA	59.774	41.667	0.00	0.00	0.00	2.74
2476	2555	3.290948	ACAGCCACTACAAAAGGTCAA	57.709	42.857	0.00	0.00	0.00	3.18
2638	2717	1.578423	GAGCAAGTGGAGCAAGTGC	59.422	57.895	0.00	0.00	42.49	4.40
2639	2718	1.239968	GGGAGCAAGTGGAGCAAGTG	61.240	60.000	0.00	0.00	0.00	3.16
2640	2719	1.073897	GGGAGCAAGTGGAGCAAGT	59.926	57.895	0.00	0.00	0.00	3.16
2641	2720	0.251077	AAGGGAGCAAGTGGAGCAAG	60.251	55.000	0.00	0.00	0.00	4.01
2642	2721	0.250901	GAAGGGAGCAAGTGGAGCAA	60.251	55.000	0.00	0.00	0.00	3.91
2644	2723	1.743252	CGAAGGGAGCAAGTGGAGC	60.743	63.158	0.00	0.00	0.00	4.70
2645	2724	0.035458	AACGAAGGGAGCAAGTGGAG	59.965	55.000	0.00	0.00	0.00	3.86
2650	2774	1.593196	TTGTGAACGAAGGGAGCAAG	58.407	50.000	0.00	0.00	0.00	4.01
2689	2816	8.984891	TTTCAGTATACGTCCGATTCTAAAAA	57.015	30.769	0.00	0.00	0.00	1.94
2700	2827	6.987992	TGTTTGGGATATTTCAGTATACGTCC	59.012	38.462	0.00	0.00	0.00	4.79
2766	3105	1.599542	ACTCGACTGCACAAAAAGCTC	59.400	47.619	0.00	0.00	0.00	4.09
2791	3431	4.568072	TCAGTACTGGGTATTGCACATT	57.432	40.909	22.48	0.00	0.00	2.71
2820	3460	7.155328	CCTAGCTTCCTTTACCACATACATAG	58.845	42.308	0.00	0.00	0.00	2.23
2822	3462	5.687706	GCCTAGCTTCCTTTACCACATACAT	60.688	44.000	0.00	0.00	0.00	2.29
2825	3465	4.037927	AGCCTAGCTTCCTTTACCACATA	58.962	43.478	0.00	0.00	33.89	2.29
2826	3466	2.846827	AGCCTAGCTTCCTTTACCACAT	59.153	45.455	0.00	0.00	33.89	3.21
2827	3467	2.266279	AGCCTAGCTTCCTTTACCACA	58.734	47.619	0.00	0.00	33.89	4.17
2828	3468	3.351794	AAGCCTAGCTTCCTTTACCAC	57.648	47.619	0.00	0.00	46.77	4.16
2921	3569	5.180868	AGTCGTTGTCACACCTAGTAGTAAG	59.819	44.000	0.00	0.00	0.00	2.34
3065	3713	5.995282	TGAATCGGAAAAAGTCTAAGCTCAA	59.005	36.000	0.00	0.00	0.00	3.02
3089	3749	7.172868	TGATGCACAAGATTATTCCAACAAT	57.827	32.000	0.00	0.00	0.00	2.71
3090	3750	6.350361	CCTGATGCACAAGATTATTCCAACAA	60.350	38.462	0.00	0.00	0.00	2.83
3098	3758	6.039047	GTCATTGTCCTGATGCACAAGATTAT	59.961	38.462	0.00	0.00	35.99	1.28
3105	3765	1.352017	AGGTCATTGTCCTGATGCACA	59.648	47.619	1.38	0.00	33.62	4.57
3106	3766	2.012673	GAGGTCATTGTCCTGATGCAC	58.987	52.381	7.21	0.00	35.20	4.57
3107	3767	1.405933	CGAGGTCATTGTCCTGATGCA	60.406	52.381	7.21	0.00	35.20	3.96
3108	3768	1.134699	TCGAGGTCATTGTCCTGATGC	60.135	52.381	7.21	0.00	35.20	3.91
3109	3769	2.094026	TGTCGAGGTCATTGTCCTGATG	60.094	50.000	7.21	0.00	35.20	3.07
3110	3770	2.167281	CTGTCGAGGTCATTGTCCTGAT	59.833	50.000	7.21	0.00	35.20	2.90
3111	3771	1.546029	CTGTCGAGGTCATTGTCCTGA	59.454	52.381	7.21	3.23	35.20	3.86
3112	3772	1.404717	CCTGTCGAGGTCATTGTCCTG	60.405	57.143	7.21	1.05	35.20	3.86
3113	3773	0.898320	CCTGTCGAGGTCATTGTCCT	59.102	55.000	1.83	1.83	38.09	3.85
3114	3774	0.108138	CCCTGTCGAGGTCATTGTCC	60.108	60.000	0.00	0.00	37.73	4.02
3131	3791	8.847196	ACTTTTCATTGTTAGAAGTTAGAACCC	58.153	33.333	0.00	0.00	0.00	4.11

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.