Multiple sequence alignment - TraesCS3B01G333800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G333800 chr3B 100.000 3800 0 0 1 3800 540209988 540213787 0.000000e+00 7018.0
1 TraesCS3B01G333800 chr3B 87.500 72 6 3 3730 3799 744731714 744731784 3.150000e-11 80.5
2 TraesCS3B01G333800 chr3A 95.519 3236 119 11 235 3451 536629066 536625838 0.000000e+00 5149.0
3 TraesCS3B01G333800 chr3A 94.298 456 18 3 3348 3800 536625824 536625374 0.000000e+00 691.0
4 TraesCS3B01G333800 chr3D 93.648 3479 129 43 1 3431 414375841 414379275 0.000000e+00 5116.0
5 TraesCS3B01G333800 chr3D 94.211 380 13 4 3424 3800 414384753 414385126 4.260000e-159 571.0
6 TraesCS3B01G333800 chr3D 92.500 40 2 1 3625 3664 462848275 462848313 5.300000e-04 56.5
7 TraesCS3B01G333800 chr2D 91.935 62 4 1 3739 3799 634638525 634638464 6.760000e-13 86.1
8 TraesCS3B01G333800 chr7D 88.406 69 6 2 3733 3799 632132159 632132227 8.750000e-12 82.4
9 TraesCS3B01G333800 chr7A 90.476 63 4 2 3739 3799 735791399 735791337 8.750000e-12 82.4
10 TraesCS3B01G333800 chr4B 89.394 66 5 2 3736 3799 558032971 558033036 8.750000e-12 82.4
11 TraesCS3B01G333800 chr4B 89.062 64 6 1 3737 3799 640109301 640109364 1.130000e-10 78.7
12 TraesCS3B01G333800 chr7B 88.060 67 6 2 3735 3799 638864571 638864505 1.130000e-10 78.7
13 TraesCS3B01G333800 chr6B 82.609 69 9 3 3315 3382 127037127 127037061 1.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G333800 chr3B 540209988 540213787 3799 False 7018 7018 100.0000 1 3800 1 chr3B.!!$F1 3799
1 TraesCS3B01G333800 chr3A 536625374 536629066 3692 True 2920 5149 94.9085 235 3800 2 chr3A.!!$R1 3565
2 TraesCS3B01G333800 chr3D 414375841 414379275 3434 False 5116 5116 93.6480 1 3431 1 chr3D.!!$F1 3430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 166 0.320374 TTTAGACGGACTGGCTGTGG 59.680 55.0 0.0 0.0 35.85 4.17 F
548 591 0.466189 CAAGAAGTGGCAGGTGGTGT 60.466 55.0 0.0 0.0 0.00 4.16 F
1638 1691 0.800631 ACATCGACAAGCACAGCATG 59.199 50.0 0.0 0.0 46.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1028 1081 0.322816 TCCCAGCTGGATGTTTGAGC 60.323 55.000 34.91 0.0 38.61 4.26 R
2070 2123 1.672356 CACTGCACCAGTAGGCACC 60.672 63.158 0.00 0.0 43.43 5.01 R
3635 3809 1.225855 TCACGTCAATGTGCAGTTCC 58.774 50.000 0.00 0.0 39.73 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.462174 GGGCCTTTATTTTTCATTTTTCTTTTG 57.538 29.630 0.84 0.00 0.00 2.44
103 105 3.243737 GGTTTAGAACTTGGGCTGGTTTG 60.244 47.826 0.00 0.00 0.00 2.93
104 106 3.306472 TTAGAACTTGGGCTGGTTTGT 57.694 42.857 0.00 0.00 0.00 2.83
106 108 2.466846 AGAACTTGGGCTGGTTTGTTT 58.533 42.857 0.00 0.00 0.00 2.83
108 110 2.979814 ACTTGGGCTGGTTTGTTTTC 57.020 45.000 0.00 0.00 0.00 2.29
109 111 2.183679 ACTTGGGCTGGTTTGTTTTCA 58.816 42.857 0.00 0.00 0.00 2.69
110 112 2.168313 ACTTGGGCTGGTTTGTTTTCAG 59.832 45.455 0.00 0.00 0.00 3.02
155 160 3.936372 TCAGAGTTTTAGACGGACTGG 57.064 47.619 0.00 0.00 33.29 4.00
161 166 0.320374 TTTAGACGGACTGGCTGTGG 59.680 55.000 0.00 0.00 35.85 4.17
176 185 2.228822 GCTGTGGTTGTCCTTGGTATTG 59.771 50.000 0.00 0.00 34.23 1.90
184 193 5.337250 GGTTGTCCTTGGTATTGGATTTTCC 60.337 44.000 0.00 0.00 36.96 3.13
191 200 4.523083 TGGTATTGGATTTTCCTCTTCCG 58.477 43.478 0.00 0.00 37.46 4.30
229 239 7.450124 CACAGAAAGTGGTAACTAGTAGAGA 57.550 40.000 3.59 0.00 44.69 3.10
231 241 8.358148 CACAGAAAGTGGTAACTAGTAGAGAAA 58.642 37.037 3.59 0.00 44.69 2.52
233 243 9.194271 CAGAAAGTGGTAACTAGTAGAGAAAAC 57.806 37.037 3.59 0.00 34.77 2.43
240 254 6.090493 GGTAACTAGTAGAGAAAACTTTGGCG 59.910 42.308 3.59 0.00 0.00 5.69
251 265 8.626526 AGAGAAAACTTTGGCGTAATTCTTTTA 58.373 29.630 0.00 0.00 0.00 1.52
254 268 9.627657 GAAAACTTTGGCGTAATTCTTTTAAAC 57.372 29.630 0.00 0.00 0.00 2.01
278 292 6.482308 ACTGGTAAATATGGACGAACTTATGC 59.518 38.462 0.00 0.00 0.00 3.14
286 300 5.648178 TGGACGAACTTATGCAGTAGTAA 57.352 39.130 4.14 0.00 32.94 2.24
291 305 7.096722 GGACGAACTTATGCAGTAGTAATAACG 60.097 40.741 4.14 7.83 32.94 3.18
342 356 2.748461 TTGTAGCTGTCGTTTGTTGC 57.252 45.000 0.00 0.00 0.00 4.17
370 394 4.935352 TTCTTTTGGAAAGTCACCATGG 57.065 40.909 11.19 11.19 37.26 3.66
375 399 0.541764 GGAAAGTCACCATGGCCCAA 60.542 55.000 13.04 0.00 0.00 4.12
432 456 7.041303 GCTAGCAAAAGGTGTTCTAAAAGTACT 60.041 37.037 10.63 0.00 0.00 2.73
442 471 7.332182 GGTGTTCTAAAAGTACTGAGGAATCAG 59.668 40.741 0.00 3.76 43.03 2.90
538 581 4.568152 ATGTTTTCGGAACAAGAAGTGG 57.432 40.909 8.88 0.00 33.42 4.00
541 584 1.593196 TTCGGAACAAGAAGTGGCAG 58.407 50.000 0.00 0.00 0.00 4.85
548 591 0.466189 CAAGAAGTGGCAGGTGGTGT 60.466 55.000 0.00 0.00 0.00 4.16
601 647 8.122481 ACCTAATCAAATCCAACCTAGGAAATT 58.878 33.333 17.98 6.34 41.92 1.82
620 666 8.567104 AGGAAATTTGCATTCATGTTTTTAACC 58.433 29.630 12.54 0.00 0.00 2.85
622 668 9.949174 GAAATTTGCATTCATGTTTTTAACCTT 57.051 25.926 0.00 0.00 0.00 3.50
653 699 5.734855 TGAGTAAATAAGGAGATTTGCGC 57.265 39.130 0.00 0.00 36.75 6.09
659 705 1.369625 AAGGAGATTTGCGCGGTTAG 58.630 50.000 8.83 0.00 0.00 2.34
673 721 2.081462 CGGTTAGCAACAAACTAGGGG 58.919 52.381 0.00 0.00 0.00 4.79
678 726 5.278808 GGTTAGCAACAAACTAGGGGAAAAG 60.279 44.000 0.00 0.00 0.00 2.27
679 727 3.230976 AGCAACAAACTAGGGGAAAAGG 58.769 45.455 0.00 0.00 0.00 3.11
761 813 9.772973 GTAATTGTGTTATGACATCCCTGTATA 57.227 33.333 0.00 0.00 38.23 1.47
823 876 4.330074 CGTTAATTTAGCTCCCAGTGTCTG 59.670 45.833 0.00 0.00 0.00 3.51
858 911 1.618487 TGCATTGTCCATGTCTTGCA 58.382 45.000 0.00 0.00 37.73 4.08
867 920 4.696877 TGTCCATGTCTTGCAATACTTCTG 59.303 41.667 15.10 9.96 0.00 3.02
973 1026 1.679153 TGAAACAGGGAAAGGAAACGC 59.321 47.619 0.00 0.00 0.00 4.84
998 1051 7.933560 CGAAGACGCTGAATATAAATCTACAG 58.066 38.462 0.00 0.00 0.00 2.74
1028 1081 4.754114 GGCTCCTGAGTTAGATAAGCAATG 59.246 45.833 0.00 0.00 31.76 2.82
1090 1143 2.360852 AGCTTGCGCTCAAGGCAT 60.361 55.556 17.64 0.00 45.15 4.40
1251 1304 1.000938 GCCAAAGAGCACAAGGAACTG 60.001 52.381 0.00 0.00 40.86 3.16
1350 1403 2.875933 CAAACAGCCGTTAGAACAGGAA 59.124 45.455 7.25 0.00 33.99 3.36
1359 1412 4.159857 CGTTAGAACAGGAACTTCTCTCG 58.840 47.826 0.00 0.00 34.60 4.04
1392 1445 1.890979 GGATGGCAGCACGGATGAG 60.891 63.158 4.64 0.00 0.00 2.90
1566 1619 4.382291 ACTACAATAACGAGTGTTGCCAA 58.618 39.130 0.00 0.00 39.12 4.52
1612 1665 4.883585 GTGCAATAGATGAGTTCATTGGGA 59.116 41.667 0.00 0.00 36.57 4.37
1638 1691 0.800631 ACATCGACAAGCACAGCATG 59.199 50.000 0.00 0.00 46.00 4.06
1770 1823 3.494398 GCAGTCTTGTCTTTGGTGACCTA 60.494 47.826 2.11 0.00 36.21 3.08
1923 1976 1.070445 GAGGTCCTGGATGATCTGCTG 59.930 57.143 0.00 0.00 0.00 4.41
2070 2123 0.802222 CCTACACGTCATCCAGTGCG 60.802 60.000 0.00 0.00 41.72 5.34
2172 2225 2.290450 TGATTCACTGCTGAAGGATGCA 60.290 45.455 0.00 0.00 39.83 3.96
2478 2531 4.614475 TCTCTTACCTGAGTGATGATGGT 58.386 43.478 0.00 0.00 35.68 3.55
2789 2842 4.038282 TCAAAAGTCATTGCAGCATTCTGT 59.962 37.500 0.00 0.00 42.29 3.41
3148 3204 4.264038 GGGTGGAAGGGTATGTTTTTCCTA 60.264 45.833 4.03 0.00 39.80 2.94
3227 3283 6.803320 CCAAGTGTGCAAACTATTACATGAAG 59.197 38.462 10.71 0.00 0.00 3.02
3403 3576 3.686622 GACTGAGCACTGTCCAACA 57.313 52.632 9.52 0.00 38.47 3.33
3425 3598 0.971386 CCTTGCAGCATTTTGTCCCT 59.029 50.000 0.00 0.00 0.00 4.20
3451 3624 5.335127 GTTTGCAACATATCTTGCTACCAG 58.665 41.667 15.47 0.00 45.79 4.00
3453 3626 4.588899 TGCAACATATCTTGCTACCAGTT 58.411 39.130 15.47 0.00 45.79 3.16
3479 3652 1.825090 TGCATCTTGCTGGTTGTAGG 58.175 50.000 0.75 0.00 45.31 3.18
3480 3653 1.098050 GCATCTTGCTGGTTGTAGGG 58.902 55.000 0.00 0.00 40.96 3.53
3481 3654 1.614317 GCATCTTGCTGGTTGTAGGGT 60.614 52.381 0.00 0.00 40.96 4.34
3482 3655 2.355716 GCATCTTGCTGGTTGTAGGGTA 60.356 50.000 0.00 0.00 40.96 3.69
3483 3656 3.535561 CATCTTGCTGGTTGTAGGGTAG 58.464 50.000 0.00 0.00 0.00 3.18
3508 3681 5.926542 GCCCTGACAAAATCCTTTCTTAAAC 59.073 40.000 0.00 0.00 0.00 2.01
3533 3706 5.661458 AGAACTTTATACATCTGGTGTCCG 58.339 41.667 0.00 0.00 42.29 4.79
3567 3740 0.581529 CACGTGAATGCACTCGTTGT 59.418 50.000 10.90 0.00 42.93 3.32
3577 3750 2.143122 GCACTCGTTGTCATTGGAAGA 58.857 47.619 0.00 0.00 0.00 2.87
3586 3760 4.898829 TGTCATTGGAAGAACACAACAG 57.101 40.909 0.00 0.00 0.00 3.16
3635 3809 1.591248 CTTCGCGGAATTGTTCGTTG 58.409 50.000 6.13 0.00 0.00 4.10
3651 3825 1.660052 CGTTGGAACTGCACATTGACG 60.660 52.381 0.00 0.00 0.00 4.35
3655 3829 1.601903 GGAACTGCACATTGACGTGAA 59.398 47.619 0.00 0.00 39.34 3.18
3687 3861 3.055819 GCACAACTTATCTCTCACTCCCA 60.056 47.826 0.00 0.00 0.00 4.37
3715 3889 3.797559 TCTCACTCACTTCTCCTCTCA 57.202 47.619 0.00 0.00 0.00 3.27
3781 3957 4.717313 GTGGGGGTCCGAACAGGC 62.717 72.222 0.00 0.00 40.77 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 2.783135 TCAGATGCCCACTCTGAAAAC 58.217 47.619 0.71 0.00 44.59 2.43
108 110 1.735386 CAGTTCAGATGCCCACTCTG 58.265 55.000 0.00 0.00 41.23 3.35
109 111 0.035630 GCAGTTCAGATGCCCACTCT 60.036 55.000 0.00 0.00 37.73 3.24
110 112 2.475666 GCAGTTCAGATGCCCACTC 58.524 57.895 0.00 0.00 37.73 3.51
129 134 5.753921 AGTCCGTCTAAAACTCTGAAAACTG 59.246 40.000 0.00 0.00 0.00 3.16
130 135 5.753921 CAGTCCGTCTAAAACTCTGAAAACT 59.246 40.000 0.00 0.00 0.00 2.66
155 160 2.200373 ATACCAAGGACAACCACAGC 57.800 50.000 0.00 0.00 38.94 4.40
161 166 5.480422 AGGAAAATCCAATACCAAGGACAAC 59.520 40.000 0.00 0.00 39.61 3.32
176 185 2.770232 TCCTACCGGAAGAGGAAAATCC 59.230 50.000 18.28 0.00 38.96 3.01
191 200 6.043854 ACTTTCTGTGAAGATCTTCCTACC 57.956 41.667 28.40 15.86 38.77 3.18
229 239 9.373603 AGTTTAAAAGAATTACGCCAAAGTTTT 57.626 25.926 0.00 0.00 0.00 2.43
231 241 7.436970 CCAGTTTAAAAGAATTACGCCAAAGTT 59.563 33.333 0.00 0.00 0.00 2.66
233 243 6.921307 ACCAGTTTAAAAGAATTACGCCAAAG 59.079 34.615 0.00 0.00 0.00 2.77
251 265 8.889717 CATAAGTTCGTCCATATTTACCAGTTT 58.110 33.333 0.00 0.00 0.00 2.66
254 268 6.481976 TGCATAAGTTCGTCCATATTTACCAG 59.518 38.462 0.00 0.00 0.00 4.00
268 282 7.675270 ACGTTATTACTACTGCATAAGTTCG 57.325 36.000 6.42 7.10 40.56 3.95
308 322 7.440556 CGACAGCTACAAAGGATAGTAGTACTA 59.559 40.741 12.38 12.38 39.82 1.82
350 364 2.627699 GCCATGGTGACTTTCCAAAAGA 59.372 45.455 14.67 0.00 38.52 2.52
351 365 2.289010 GGCCATGGTGACTTTCCAAAAG 60.289 50.000 14.67 0.00 38.52 2.27
541 584 2.222027 GCATATAGCAGGAACACCACC 58.778 52.381 0.00 0.00 44.79 4.61
548 591 7.674252 CCACAAAGGAGGCATATAGCAGGAA 62.674 48.000 0.00 0.00 43.02 3.36
601 647 8.498054 TCAAAAGGTTAAAAACATGAATGCAA 57.502 26.923 0.00 0.00 0.00 4.08
642 688 1.352056 GCTAACCGCGCAAATCTCC 59.648 57.895 8.75 0.00 0.00 3.71
653 699 2.081462 CCCCTAGTTTGTTGCTAACCG 58.919 52.381 0.00 0.00 0.00 4.44
659 705 3.227614 TCCTTTTCCCCTAGTTTGTTGC 58.772 45.455 0.00 0.00 0.00 4.17
678 726 6.766429 ACGGTTAAAGGTGATATTATCCTCC 58.234 40.000 1.27 4.52 0.00 4.30
679 727 8.033626 CCTACGGTTAAAGGTGATATTATCCTC 58.966 40.741 1.27 0.00 0.00 3.71
761 813 3.189495 CACCTCGAGCGACTGATGTATAT 59.811 47.826 6.99 0.00 0.00 0.86
762 814 2.548480 CACCTCGAGCGACTGATGTATA 59.452 50.000 6.99 0.00 0.00 1.47
763 815 1.335182 CACCTCGAGCGACTGATGTAT 59.665 52.381 6.99 0.00 0.00 2.29
764 816 0.733150 CACCTCGAGCGACTGATGTA 59.267 55.000 6.99 0.00 0.00 2.29
765 817 1.508545 CACCTCGAGCGACTGATGT 59.491 57.895 6.99 0.00 0.00 3.06
766 818 1.875813 GCACCTCGAGCGACTGATG 60.876 63.158 6.99 0.00 0.00 3.07
823 876 5.630061 ACAATGCAAAAGAACAAACAAAGC 58.370 33.333 0.00 0.00 0.00 3.51
858 911 8.855110 AGTGAAGATCGTATCATCAGAAGTATT 58.145 33.333 2.89 0.00 37.64 1.89
867 920 8.569641 ACTTAAGGTAGTGAAGATCGTATCATC 58.430 37.037 7.53 0.00 0.00 2.92
973 1026 7.803659 TCTGTAGATTTATATTCAGCGTCTTCG 59.196 37.037 0.00 0.00 40.37 3.79
992 1045 3.640498 CTCAGGAGCCATCATTCTGTAGA 59.360 47.826 0.00 0.00 0.00 2.59
993 1046 3.387374 ACTCAGGAGCCATCATTCTGTAG 59.613 47.826 0.00 0.00 0.00 2.74
994 1047 3.378512 ACTCAGGAGCCATCATTCTGTA 58.621 45.455 0.00 0.00 0.00 2.74
995 1048 2.194859 ACTCAGGAGCCATCATTCTGT 58.805 47.619 0.00 0.00 0.00 3.41
998 1051 4.679373 TCTAACTCAGGAGCCATCATTC 57.321 45.455 0.00 0.00 0.00 2.67
1028 1081 0.322816 TCCCAGCTGGATGTTTGAGC 60.323 55.000 34.91 0.00 38.61 4.26
1054 1107 7.220491 CGCAAGCTTGATATCACATATCTCTAG 59.780 40.741 30.39 0.00 41.69 2.43
1090 1143 5.181245 CCAAACTAAGGATCTTCTTTCGCAA 59.819 40.000 0.00 0.00 0.00 4.85
1176 1229 1.133025 GACAGCTGCCGCAATTTGTAT 59.867 47.619 15.27 0.00 39.10 2.29
1185 1238 2.047844 TTCTCAGACAGCTGCCGC 60.048 61.111 15.27 3.41 42.01 6.53
1251 1304 1.137086 AGGTCATCAGCATACACGGTC 59.863 52.381 0.00 0.00 0.00 4.79
1350 1403 5.010933 TCTGTAGAATGGAACGAGAGAAGT 58.989 41.667 0.00 0.00 0.00 3.01
1359 1412 3.118261 TGCCATCCTCTGTAGAATGGAAC 60.118 47.826 14.06 1.88 31.87 3.62
1364 1417 2.121948 TGCTGCCATCCTCTGTAGAAT 58.878 47.619 0.00 0.00 0.00 2.40
1392 1445 3.979495 CACTGAATGAGCTGCTTGAAAAC 59.021 43.478 2.53 0.00 0.00 2.43
1566 1619 2.810274 CTGCCGTGCATTGATATAAGCT 59.190 45.455 0.00 0.00 38.13 3.74
1612 1665 2.224042 TGTGCTTGTCGATGTGAAGAGT 60.224 45.455 0.00 0.00 0.00 3.24
1638 1691 6.823689 TCCATTTAGTGCTCATAAGTTCTTCC 59.176 38.462 0.00 0.00 0.00 3.46
1770 1823 4.993584 CACAAGTCTACAGCTGTTTCTGAT 59.006 41.667 27.06 9.70 37.51 2.90
1923 1976 1.889545 ACAAGAACTCTGCTTCAGGC 58.110 50.000 0.00 0.00 42.22 4.85
2070 2123 1.672356 CACTGCACCAGTAGGCACC 60.672 63.158 0.00 0.00 43.43 5.01
2172 2225 5.189736 TGAGTTTGGTATAGGCTGTTGATCT 59.810 40.000 0.00 0.00 0.00 2.75
2478 2531 3.536917 CCTCCGGCGGCACATAGA 61.537 66.667 23.83 0.00 0.00 1.98
3148 3204 7.317722 ACCAGAATAGGTTTGTCTAGTTCTT 57.682 36.000 0.00 0.00 39.34 2.52
3238 3294 6.070767 AGCTAGAAACCATGTTTAGTAGCTCA 60.071 38.462 20.06 0.00 37.98 4.26
3275 3331 4.703093 CGTTAATTAGGGGTGTTGTTGGAT 59.297 41.667 0.00 0.00 0.00 3.41
3276 3332 4.073549 CGTTAATTAGGGGTGTTGTTGGA 58.926 43.478 0.00 0.00 0.00 3.53
3343 3399 4.607293 AGATCTAACGGCTATGCAATCA 57.393 40.909 0.00 0.00 0.00 2.57
3346 3402 4.202212 TGCTAAGATCTAACGGCTATGCAA 60.202 41.667 0.00 0.00 0.00 4.08
3403 3576 1.615392 GGACAAAATGCTGCAAGGTCT 59.385 47.619 6.36 0.00 0.00 3.85
3479 3652 1.285078 AGGATTTTGTCAGGGCCTACC 59.715 52.381 5.28 0.00 40.67 3.18
3480 3653 2.808906 AGGATTTTGTCAGGGCCTAC 57.191 50.000 5.28 5.95 0.00 3.18
3481 3654 3.333680 AGAAAGGATTTTGTCAGGGCCTA 59.666 43.478 5.28 0.00 39.27 3.93
3482 3655 2.110721 AGAAAGGATTTTGTCAGGGCCT 59.889 45.455 0.00 0.00 39.27 5.19
3483 3656 2.529632 AGAAAGGATTTTGTCAGGGCC 58.470 47.619 0.00 0.00 39.27 5.80
3508 3681 5.749109 GGACACCAGATGTATAAAGTTCTCG 59.251 44.000 0.00 0.00 43.56 4.04
3567 3740 3.882888 GGTCTGTTGTGTTCTTCCAATGA 59.117 43.478 0.00 0.00 0.00 2.57
3577 3750 2.684881 CTGCTTCAAGGTCTGTTGTGTT 59.315 45.455 0.00 0.00 0.00 3.32
3586 3760 3.929610 GTCTCATGTACTGCTTCAAGGTC 59.070 47.826 0.00 0.00 0.00 3.85
3635 3809 1.225855 TCACGTCAATGTGCAGTTCC 58.774 50.000 0.00 0.00 39.73 3.62
3651 3825 2.159435 AGTTGTGCAGGTTTTCGTTCAC 60.159 45.455 0.00 0.00 33.78 3.18
3655 3829 4.134563 AGATAAGTTGTGCAGGTTTTCGT 58.865 39.130 0.00 0.00 0.00 3.85
3687 3861 4.020662 GGAGAAGTGAGTGAGATGGAAACT 60.021 45.833 0.00 0.00 0.00 2.66
3715 3889 0.719015 TGGGGAACTGGGAGAGAGAT 59.281 55.000 0.00 0.00 0.00 2.75
3745 3921 1.134280 ACCCGAGATCTGCTGGATTTG 60.134 52.381 0.00 0.00 34.33 2.32
3781 3957 2.360350 ACCATCGCACCAAGGCTG 60.360 61.111 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.