Multiple sequence alignment - TraesCS3B01G333700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G333700 chr3B 100.000 3783 0 0 1 3783 540206332 540210114 0.000000e+00 6986.0
1 TraesCS3B01G333700 chr3D 87.835 2351 111 61 1478 3783 414373751 414375971 0.000000e+00 2595.0
2 TraesCS3B01G333700 chr3D 93.617 1269 44 20 1 1253 414372346 414373593 0.000000e+00 1860.0
3 TraesCS3B01G333700 chr3D 94.595 148 6 2 1310 1456 414373618 414373764 1.060000e-55 228.0
4 TraesCS3B01G333700 chr3A 89.448 1611 77 37 1478 3049 536633709 536632153 0.000000e+00 1947.0
5 TraesCS3B01G333700 chr3A 90.999 1111 75 14 9 1110 536635229 536634135 0.000000e+00 1474.0
6 TraesCS3B01G333700 chr3A 90.563 604 14 16 3073 3671 536629950 536629385 0.000000e+00 760.0
7 TraesCS3B01G333700 chr3A 87.772 368 19 12 1112 1458 536634056 536633694 1.270000e-109 407.0
8 TraesCS3B01G333700 chr7A 96.774 31 1 0 2722 2752 434676755 434676725 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G333700 chr3B 540206332 540210114 3782 False 6986 6986 100.000000 1 3783 1 chr3B.!!$F1 3782
1 TraesCS3B01G333700 chr3D 414372346 414375971 3625 False 1561 2595 92.015667 1 3783 3 chr3D.!!$F1 3782
2 TraesCS3B01G333700 chr3A 536629385 536635229 5844 True 1147 1947 89.695500 9 3671 4 chr3A.!!$R1 3662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 642 0.311790 CAAGTTGGTGTGCTCGCATT 59.688 50.0 1.32 0.0 0.0 3.56 F
1932 2097 0.031994 CCGCACCTTCCCAACTTTTG 59.968 55.0 0.00 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2244 0.249699 CGGGTATGCTGCCACGATTA 60.250 55.0 0.0 0.0 0.0 1.75 R
3245 5624 0.250793 ACGGGAGAAACACACACACA 59.749 50.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.441836 ACTACATGTCAACTACAACTTGATGA 58.558 34.615 0.00 0.00 42.70 2.92
42 47 7.959175 ACTACAACTTGATGACAGGTAGTTTA 58.041 34.615 0.00 0.00 37.31 2.01
66 71 1.535028 CTGGACGCATGTTAAACTGCA 59.465 47.619 10.20 0.00 38.30 4.41
67 72 2.158559 TGGACGCATGTTAAACTGCAT 58.841 42.857 10.20 0.00 38.30 3.96
296 301 4.201960 GCCTCCTAGTAAAAATTGCTCAGC 60.202 45.833 0.00 0.00 0.00 4.26
403 409 3.469008 TGAGTTGACATTTGACGACCT 57.531 42.857 0.00 0.00 0.00 3.85
625 631 3.593442 TCAACAATCTCCCAAGTTGGT 57.407 42.857 20.54 0.00 41.14 3.67
629 635 1.270550 CAATCTCCCAAGTTGGTGTGC 59.729 52.381 20.54 0.00 35.17 4.57
632 638 1.227823 TCCCAAGTTGGTGTGCTCG 60.228 57.895 20.54 3.55 35.17 5.03
633 639 2.639286 CCAAGTTGGTGTGCTCGC 59.361 61.111 14.21 0.00 31.35 5.03
636 642 0.311790 CAAGTTGGTGTGCTCGCATT 59.688 50.000 1.32 0.00 0.00 3.56
637 643 1.535028 CAAGTTGGTGTGCTCGCATTA 59.465 47.619 1.32 0.00 0.00 1.90
638 644 2.113860 AGTTGGTGTGCTCGCATTAT 57.886 45.000 1.32 0.00 0.00 1.28
639 645 1.739466 AGTTGGTGTGCTCGCATTATG 59.261 47.619 1.32 0.00 0.00 1.90
641 647 2.675844 GTTGGTGTGCTCGCATTATGTA 59.324 45.455 1.32 0.00 0.00 2.29
644 650 4.893608 TGGTGTGCTCGCATTATGTATAT 58.106 39.130 1.32 0.00 0.00 0.86
673 679 5.405269 GGAATTGGTGTTGAAATGCAGTTAC 59.595 40.000 0.00 0.00 0.00 2.50
674 680 5.789643 ATTGGTGTTGAAATGCAGTTACT 57.210 34.783 0.00 0.00 0.00 2.24
679 685 7.199766 TGGTGTTGAAATGCAGTTACTAAAAG 58.800 34.615 0.00 0.00 0.00 2.27
681 687 7.704899 GGTGTTGAAATGCAGTTACTAAAAGTT 59.295 33.333 0.00 0.00 0.00 2.66
682 688 9.724839 GTGTTGAAATGCAGTTACTAAAAGTTA 57.275 29.630 0.00 0.00 0.00 2.24
694 700 8.610035 AGTTACTAAAAGTTAAGTGTTGACAGC 58.390 33.333 0.00 0.00 0.00 4.40
759 765 3.139077 GTGCCTTGTTGTAACTAGCTGT 58.861 45.455 0.00 0.00 31.71 4.40
812 818 1.585002 CGTGTGTTTGTTGGTGGCG 60.585 57.895 0.00 0.00 0.00 5.69
813 819 1.876263 GTGTGTTTGTTGGTGGCGC 60.876 57.895 0.00 0.00 0.00 6.53
862 868 1.897802 TGTAAGGAACCGGTCTTCTCC 59.102 52.381 8.04 11.88 0.00 3.71
879 885 3.122480 TCTCCTGGCTTTTGGATGGATA 58.878 45.455 0.00 0.00 0.00 2.59
899 905 5.532779 GGATATTTCCCTCACCAATCTCAAC 59.467 44.000 0.00 0.00 35.84 3.18
1058 1070 3.726517 CACCACCGCGCCTTTCAG 61.727 66.667 0.00 0.00 0.00 3.02
1079 1092 2.281140 GGTAACGTCAGCTCTTCTCC 57.719 55.000 0.00 0.00 0.00 3.71
1087 1100 0.175302 CAGCTCTTCTCCGTGCTCAT 59.825 55.000 0.00 0.00 31.96 2.90
1111 1124 3.755041 GCTAATCGCTTGCTAAGTACG 57.245 47.619 0.00 0.00 35.14 3.67
1126 1210 5.050431 GCTAAGTACGAGTAGTAGTAGTGGC 60.050 48.000 1.33 4.34 37.98 5.01
1135 1225 5.679601 AGTAGTAGTAGTGGCAGTAGGTAC 58.320 45.833 1.37 7.82 0.00 3.34
1258 1348 4.749310 CGGCTGAGCTGCGTCCTT 62.749 66.667 3.72 0.00 0.00 3.36
1259 1349 2.359230 GGCTGAGCTGCGTCCTTT 60.359 61.111 3.72 0.00 0.00 3.11
1261 1351 1.963338 GCTGAGCTGCGTCCTTTGT 60.963 57.895 0.00 0.00 0.00 2.83
1264 1354 0.391228 TGAGCTGCGTCCTTTGTGTA 59.609 50.000 0.00 0.00 0.00 2.90
1268 1370 2.290641 AGCTGCGTCCTTTGTGTAAAAG 59.709 45.455 0.00 0.00 0.00 2.27
1275 1377 3.066760 GTCCTTTGTGTAAAAGCTGCACT 59.933 43.478 1.02 0.00 40.98 4.40
1286 1388 1.835494 AGCTGCACTGCTCATCAAAT 58.165 45.000 1.02 0.00 39.34 2.32
1290 1392 3.428999 GCTGCACTGCTCATCAAATCAAT 60.429 43.478 1.98 0.00 0.00 2.57
1291 1393 4.104696 TGCACTGCTCATCAAATCAATG 57.895 40.909 1.98 0.00 0.00 2.82
1295 1397 5.742453 GCACTGCTCATCAAATCAATGTAAG 59.258 40.000 0.00 0.00 0.00 2.34
1296 1398 6.403964 GCACTGCTCATCAAATCAATGTAAGA 60.404 38.462 0.00 0.00 0.00 2.10
1300 1402 8.746922 TGCTCATCAAATCAATGTAAGAAAAC 57.253 30.769 0.00 0.00 0.00 2.43
1302 1404 7.814107 GCTCATCAAATCAATGTAAGAAAACCA 59.186 33.333 0.00 0.00 0.00 3.67
1303 1405 9.865321 CTCATCAAATCAATGTAAGAAAACCAT 57.135 29.630 0.00 0.00 0.00 3.55
1304 1406 9.642327 TCATCAAATCAATGTAAGAAAACCATG 57.358 29.630 0.00 0.00 0.00 3.66
1347 1457 1.178534 TAGCAAACTGGCAAGGCACC 61.179 55.000 0.00 0.00 35.83 5.01
1350 1460 0.530431 CAAACTGGCAAGGCACCAAC 60.530 55.000 0.00 0.00 36.56 3.77
1456 1567 5.704053 CCGTTTAGTCAACTTCTAACCCAAT 59.296 40.000 0.00 0.00 32.53 3.16
1457 1568 6.128363 CCGTTTAGTCAACTTCTAACCCAATC 60.128 42.308 0.00 0.00 32.53 2.67
1458 1569 6.649557 CGTTTAGTCAACTTCTAACCCAATCT 59.350 38.462 0.00 0.00 32.53 2.40
1459 1570 7.816031 CGTTTAGTCAACTTCTAACCCAATCTA 59.184 37.037 0.00 0.00 32.53 1.98
1460 1571 8.933807 GTTTAGTCAACTTCTAACCCAATCTAC 58.066 37.037 0.00 0.00 31.92 2.59
1461 1572 6.936968 AGTCAACTTCTAACCCAATCTACT 57.063 37.500 0.00 0.00 0.00 2.57
1462 1573 6.937392 AGTCAACTTCTAACCCAATCTACTC 58.063 40.000 0.00 0.00 0.00 2.59
1463 1574 5.805994 GTCAACTTCTAACCCAATCTACTCG 59.194 44.000 0.00 0.00 0.00 4.18
1464 1575 4.388378 ACTTCTAACCCAATCTACTCGC 57.612 45.455 0.00 0.00 0.00 5.03
1465 1576 3.767673 ACTTCTAACCCAATCTACTCGCA 59.232 43.478 0.00 0.00 0.00 5.10
1466 1577 4.222145 ACTTCTAACCCAATCTACTCGCAA 59.778 41.667 0.00 0.00 0.00 4.85
1467 1578 4.811969 TCTAACCCAATCTACTCGCAAA 57.188 40.909 0.00 0.00 0.00 3.68
1468 1579 5.155278 TCTAACCCAATCTACTCGCAAAA 57.845 39.130 0.00 0.00 0.00 2.44
1469 1580 5.553123 TCTAACCCAATCTACTCGCAAAAA 58.447 37.500 0.00 0.00 0.00 1.94
1530 1641 2.130395 CATGGCTACGCATGTCTACTG 58.870 52.381 0.00 0.00 0.00 2.74
1555 1666 5.266733 TGAAGTATGTGGTTACCGGATAC 57.733 43.478 9.46 12.21 0.00 2.24
1584 1695 9.166173 TGGATTTTTCTACTAGTCAATCATGTG 57.834 33.333 0.00 0.00 0.00 3.21
1644 1772 3.251004 GCAGTCAACCTCCACAAAACTAG 59.749 47.826 0.00 0.00 0.00 2.57
1649 1777 2.795329 ACCTCCACAAAACTAGCCATG 58.205 47.619 0.00 0.00 0.00 3.66
1662 1790 1.517694 GCCATGCAAATCACAGGCG 60.518 57.895 0.00 0.00 38.78 5.52
1663 1791 1.517694 CCATGCAAATCACAGGCGC 60.518 57.895 0.00 0.00 0.00 6.53
1664 1792 1.213275 CATGCAAATCACAGGCGCA 59.787 52.632 10.83 0.00 36.95 6.09
1665 1793 0.800683 CATGCAAATCACAGGCGCAG 60.801 55.000 10.83 3.04 35.79 5.18
1666 1794 1.246056 ATGCAAATCACAGGCGCAGT 61.246 50.000 10.83 3.85 35.79 4.40
1667 1795 0.605050 TGCAAATCACAGGCGCAGTA 60.605 50.000 10.83 0.00 0.00 2.74
1668 1796 0.734889 GCAAATCACAGGCGCAGTAT 59.265 50.000 10.83 0.00 0.00 2.12
1669 1797 1.133025 GCAAATCACAGGCGCAGTATT 59.867 47.619 10.83 5.58 0.00 1.89
1670 1798 2.789208 CAAATCACAGGCGCAGTATTG 58.211 47.619 10.83 9.47 0.00 1.90
1703 1831 0.105593 AGCTCGATGGGTGCTGTATG 59.894 55.000 0.00 0.00 43.46 2.39
1705 1833 0.105593 CTCGATGGGTGCTGTATGCT 59.894 55.000 0.00 0.00 43.37 3.79
1771 1929 1.574428 CTCGCAACCCTTTTGACCG 59.426 57.895 0.00 0.00 0.00 4.79
1800 1958 6.096001 CCTGCAACTTGGCTAAAGAAATCTAT 59.904 38.462 6.68 0.00 39.38 1.98
1891 2053 2.290071 CGCCTTCCTTTAGTCTGGGAAA 60.290 50.000 0.00 0.00 38.45 3.13
1926 2091 2.597217 CTTGCCGCACCTTCCCAA 60.597 61.111 0.00 0.00 0.00 4.12
1927 2092 2.909965 TTGCCGCACCTTCCCAAC 60.910 61.111 0.00 0.00 0.00 3.77
1931 2096 1.744320 GCCGCACCTTCCCAACTTTT 61.744 55.000 0.00 0.00 0.00 2.27
1932 2097 0.031994 CCGCACCTTCCCAACTTTTG 59.968 55.000 0.00 0.00 0.00 2.44
1933 2098 0.744281 CGCACCTTCCCAACTTTTGT 59.256 50.000 0.00 0.00 0.00 2.83
1934 2099 1.950909 CGCACCTTCCCAACTTTTGTA 59.049 47.619 0.00 0.00 0.00 2.41
1935 2100 2.287368 CGCACCTTCCCAACTTTTGTAC 60.287 50.000 0.00 0.00 0.00 2.90
1936 2101 2.956333 GCACCTTCCCAACTTTTGTACT 59.044 45.455 0.00 0.00 0.00 2.73
1937 2102 3.004419 GCACCTTCCCAACTTTTGTACTC 59.996 47.826 0.00 0.00 0.00 2.59
1964 2130 2.746803 GGAAAATCGACACCGGGCG 61.747 63.158 6.32 6.87 36.24 6.13
1999 2170 7.444792 CCCACCTTTGAATTGAATTGAATTGAA 59.555 33.333 7.65 2.90 0.00 2.69
2000 2171 9.005777 CCACCTTTGAATTGAATTGAATTGAAT 57.994 29.630 7.65 0.00 0.00 2.57
2129 2300 5.925397 CGATTTCCATCAATAGTCAGAGAGG 59.075 44.000 0.00 0.00 0.00 3.69
2181 2352 2.093500 TCTCTGCATGTACCACCACATC 60.093 50.000 0.00 0.00 37.02 3.06
2280 2451 2.179517 CGGAGTCGCGAGCTTCTT 59.820 61.111 10.24 0.00 0.00 2.52
2281 2452 1.870016 CGGAGTCGCGAGCTTCTTC 60.870 63.158 10.24 0.00 0.00 2.87
2282 2453 1.509004 GGAGTCGCGAGCTTCTTCT 59.491 57.895 10.24 0.00 0.00 2.85
2295 2466 2.178580 CTTCTTCTCCAGCTCACCTCT 58.821 52.381 0.00 0.00 0.00 3.69
2397 2572 6.145338 GTGGAACGGTTCAAGATAGATAGA 57.855 41.667 21.36 0.00 0.00 1.98
2398 2573 6.750148 GTGGAACGGTTCAAGATAGATAGAT 58.250 40.000 21.36 0.00 0.00 1.98
2416 2591 8.678593 AGATAGATATCGTTACTGTTCAGTCA 57.321 34.615 8.80 0.00 37.76 3.41
2424 2599 6.220201 TCGTTACTGTTCAGTCAATCAATCA 58.780 36.000 8.80 0.00 0.00 2.57
2494 2669 6.018016 TGACTGTATTTTGTGTGTGATGTGAG 60.018 38.462 0.00 0.00 0.00 3.51
2504 2679 4.562394 GTGTGTGATGTGAGTTTTGGTTTG 59.438 41.667 0.00 0.00 0.00 2.93
2506 2681 3.123050 GTGATGTGAGTTTTGGTTTGGC 58.877 45.455 0.00 0.00 0.00 4.52
2507 2682 2.762887 TGATGTGAGTTTTGGTTTGGCA 59.237 40.909 0.00 0.00 0.00 4.92
2508 2683 3.387374 TGATGTGAGTTTTGGTTTGGCAT 59.613 39.130 0.00 0.00 0.00 4.40
2554 2729 1.595993 CGGACATCCAGTCGGACACT 61.596 60.000 11.27 0.00 46.79 3.55
2615 2790 0.325110 CAAGGAGGAGCTGGAGGAGA 60.325 60.000 0.00 0.00 0.00 3.71
2785 2960 3.200825 ACCAGGTCCAGATCGAATGAATT 59.799 43.478 2.74 0.00 0.00 2.17
2808 2983 1.871418 AGAGCTAGCAGAACCATCCA 58.129 50.000 18.83 0.00 0.00 3.41
2816 2991 1.068127 GCAGAACCATCCATCCAATGC 59.932 52.381 0.00 0.00 0.00 3.56
2817 2992 2.662866 CAGAACCATCCATCCAATGCT 58.337 47.619 0.00 0.00 0.00 3.79
2818 2993 2.361119 CAGAACCATCCATCCAATGCTG 59.639 50.000 0.00 0.00 0.00 4.41
2819 2994 1.068127 GAACCATCCATCCAATGCTGC 59.932 52.381 0.00 0.00 0.00 5.25
2820 2995 1.105167 ACCATCCATCCAATGCTGCG 61.105 55.000 0.00 0.00 0.00 5.18
2821 2996 1.105167 CCATCCATCCAATGCTGCGT 61.105 55.000 0.00 0.00 0.00 5.24
2822 2997 0.309922 CATCCATCCAATGCTGCGTC 59.690 55.000 0.00 0.00 0.00 5.19
2868 3050 4.537015 GTTCTGAGTGACGAAATTTTGGG 58.463 43.478 10.22 0.00 0.00 4.12
2945 3133 5.579511 CGGAGAAACTGAACCGTGTTATTAT 59.420 40.000 0.00 0.00 40.42 1.28
2946 3134 6.091713 CGGAGAAACTGAACCGTGTTATTATT 59.908 38.462 0.00 0.00 40.42 1.40
2947 3135 7.276218 CGGAGAAACTGAACCGTGTTATTATTA 59.724 37.037 0.00 0.00 40.42 0.98
2948 3136 8.601476 GGAGAAACTGAACCGTGTTATTATTAG 58.399 37.037 0.00 0.00 0.00 1.73
2949 3137 9.362539 GAGAAACTGAACCGTGTTATTATTAGA 57.637 33.333 0.00 0.00 0.00 2.10
2950 3138 9.148104 AGAAACTGAACCGTGTTATTATTAGAC 57.852 33.333 0.00 0.00 0.00 2.59
2951 3139 8.836268 AAACTGAACCGTGTTATTATTAGACA 57.164 30.769 0.00 0.00 0.00 3.41
2952 3140 8.836268 AACTGAACCGTGTTATTATTAGACAA 57.164 30.769 0.00 0.00 0.00 3.18
3049 3237 3.006940 TGTTTTGATATGGACGTGGAGC 58.993 45.455 0.00 0.00 0.00 4.70
3050 3238 2.325583 TTTGATATGGACGTGGAGCC 57.674 50.000 0.00 0.00 0.00 4.70
3051 3239 1.199615 TTGATATGGACGTGGAGCCA 58.800 50.000 0.00 0.00 38.78 4.75
3052 3240 0.752658 TGATATGGACGTGGAGCCAG 59.247 55.000 0.00 0.00 37.64 4.85
3062 5433 0.179081 GTGGAGCCAGGGACGTTATC 60.179 60.000 0.00 0.00 0.00 1.75
3063 5434 0.616395 TGGAGCCAGGGACGTTATCA 60.616 55.000 0.00 0.00 0.00 2.15
3089 5460 5.714806 AGTCCCGGAAATGAACAAACAATAT 59.285 36.000 0.73 0.00 0.00 1.28
3199 5574 0.035739 TCCGTTTTCCACAGGGCTAC 59.964 55.000 0.00 0.00 0.00 3.58
3220 5595 3.262405 ACAGAAAACCGGAGCCTATTGTA 59.738 43.478 9.46 0.00 0.00 2.41
3234 5613 4.093408 GCCTATTGTATCTGTGTGTGTGTG 59.907 45.833 0.00 0.00 0.00 3.82
3235 5614 5.237815 CCTATTGTATCTGTGTGTGTGTGT 58.762 41.667 0.00 0.00 0.00 3.72
3236 5615 5.120674 CCTATTGTATCTGTGTGTGTGTGTG 59.879 44.000 0.00 0.00 0.00 3.82
3237 5616 3.535280 TGTATCTGTGTGTGTGTGTGT 57.465 42.857 0.00 0.00 0.00 3.72
3238 5617 3.194062 TGTATCTGTGTGTGTGTGTGTG 58.806 45.455 0.00 0.00 0.00 3.82
3239 5618 2.401583 ATCTGTGTGTGTGTGTGTGT 57.598 45.000 0.00 0.00 0.00 3.72
3240 5619 1.437625 TCTGTGTGTGTGTGTGTGTG 58.562 50.000 0.00 0.00 0.00 3.82
3241 5620 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
3242 5621 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3243 5622 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3244 5623 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3245 5624 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3246 5625 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3247 5626 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3248 5627 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3249 5628 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3250 5629 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3251 5630 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3252 5631 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3253 5632 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3254 5633 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3293 5672 1.555075 AGCGGCATAGAGTGAAGGAAA 59.445 47.619 1.45 0.00 0.00 3.13
3300 5679 4.393371 GCATAGAGTGAAGGAAAGGAACAC 59.607 45.833 0.00 0.00 0.00 3.32
3303 5682 3.142174 GAGTGAAGGAAAGGAACACAGG 58.858 50.000 0.00 0.00 34.47 4.00
3452 5851 0.838122 CTCCCACACCTGACCTTCCT 60.838 60.000 0.00 0.00 0.00 3.36
3453 5852 0.836400 TCCCACACCTGACCTTCCTC 60.836 60.000 0.00 0.00 0.00 3.71
3454 5853 1.679898 CCACACCTGACCTTCCTCC 59.320 63.158 0.00 0.00 0.00 4.30
3455 5854 1.679898 CACACCTGACCTTCCTCCC 59.320 63.158 0.00 0.00 0.00 4.30
3456 5855 1.539124 ACACCTGACCTTCCTCCCC 60.539 63.158 0.00 0.00 0.00 4.81
3457 5856 1.229658 CACCTGACCTTCCTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
3458 5857 1.229658 ACCTGACCTTCCTCCCCTG 60.230 63.158 0.00 0.00 0.00 4.45
3459 5858 2.674220 CCTGACCTTCCTCCCCTGC 61.674 68.421 0.00 0.00 0.00 4.85
3460 5859 2.610859 TGACCTTCCTCCCCTGCC 60.611 66.667 0.00 0.00 0.00 4.85
3461 5860 3.412408 GACCTTCCTCCCCTGCCC 61.412 72.222 0.00 0.00 0.00 5.36
3462 5861 4.285790 ACCTTCCTCCCCTGCCCA 62.286 66.667 0.00 0.00 0.00 5.36
3463 5862 3.732849 CCTTCCTCCCCTGCCCAC 61.733 72.222 0.00 0.00 0.00 4.61
3464 5863 2.612115 CTTCCTCCCCTGCCCACT 60.612 66.667 0.00 0.00 0.00 4.00
3465 5864 2.610859 TTCCTCCCCTGCCCACTC 60.611 66.667 0.00 0.00 0.00 3.51
3466 5865 4.741239 TCCTCCCCTGCCCACTCC 62.741 72.222 0.00 0.00 0.00 3.85
3495 5894 2.140224 CTCCCTCTCCCCTCTTCTCTA 58.860 57.143 0.00 0.00 0.00 2.43
3547 5950 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3548 5951 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3549 5952 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3550 5953 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3552 5955 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3553 5956 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
3554 5957 4.078922 TCTCTCTCTCTCTCTCTCTCTCCT 60.079 50.000 0.00 0.00 0.00 3.69
3555 5958 4.624913 TCTCTCTCTCTCTCTCTCTCCTT 58.375 47.826 0.00 0.00 0.00 3.36
3556 5959 5.032846 TCTCTCTCTCTCTCTCTCTCCTTT 58.967 45.833 0.00 0.00 0.00 3.11
3557 5960 5.488919 TCTCTCTCTCTCTCTCTCTCCTTTT 59.511 44.000 0.00 0.00 0.00 2.27
3558 5961 6.672218 TCTCTCTCTCTCTCTCTCTCCTTTTA 59.328 42.308 0.00 0.00 0.00 1.52
3702 6108 9.462174 GGGCCTTTATTTTTCATTTTTCTTTTG 57.538 29.630 0.84 0.00 0.00 2.44
3759 6166 3.243737 GGTTTAGAACTTGGGCTGGTTTG 60.244 47.826 0.00 0.00 0.00 2.93
3760 6167 3.306472 TTAGAACTTGGGCTGGTTTGT 57.694 42.857 0.00 0.00 0.00 2.83
3762 6169 2.466846 AGAACTTGGGCTGGTTTGTTT 58.533 42.857 0.00 0.00 0.00 2.83
3764 6171 2.979814 ACTTGGGCTGGTTTGTTTTC 57.020 45.000 0.00 0.00 0.00 2.29
3765 6172 2.183679 ACTTGGGCTGGTTTGTTTTCA 58.816 42.857 0.00 0.00 0.00 2.69
3766 6173 2.168313 ACTTGGGCTGGTTTGTTTTCAG 59.832 45.455 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 47 3.938963 CAGTTTAACATGCGTCCAGGTAT 59.061 43.478 0.00 0.00 34.41 2.73
66 71 4.156455 ACCTGCAGAAACGATGGAATAT 57.844 40.909 17.39 0.00 0.00 1.28
67 72 3.627395 ACCTGCAGAAACGATGGAATA 57.373 42.857 17.39 0.00 0.00 1.75
218 223 8.157476 AGATTTCAGTTCTTGGTACTTGTGTAT 58.843 33.333 0.00 0.00 0.00 2.29
270 275 3.696548 AGCAATTTTTACTAGGAGGCTGC 59.303 43.478 0.00 0.00 0.00 5.25
296 301 1.278172 CCTTCGTATGCCGCGATCAG 61.278 60.000 8.23 0.00 38.21 2.90
364 369 1.067706 CATTTGGGTCTTGCGCATCAA 60.068 47.619 12.75 8.64 39.84 2.57
426 432 5.796350 AACAGCGTAAACCAACATCTATC 57.204 39.130 0.00 0.00 0.00 2.08
559 565 9.632638 AGCTATACATCAACCATTACATTTTCT 57.367 29.630 0.00 0.00 0.00 2.52
625 631 6.589907 CCACTTATATACATAATGCGAGCACA 59.410 38.462 0.00 0.00 0.00 4.57
637 643 9.693739 TTCAACACCAATTCCACTTATATACAT 57.306 29.630 0.00 0.00 0.00 2.29
638 644 9.521841 TTTCAACACCAATTCCACTTATATACA 57.478 29.630 0.00 0.00 0.00 2.29
641 647 7.981225 GCATTTCAACACCAATTCCACTTATAT 59.019 33.333 0.00 0.00 0.00 0.86
644 650 5.069648 TGCATTTCAACACCAATTCCACTTA 59.930 36.000 0.00 0.00 0.00 2.24
673 679 7.126398 GTCAGCTGTCAACACTTAACTTTTAG 58.874 38.462 14.67 0.00 0.00 1.85
674 680 6.037830 GGTCAGCTGTCAACACTTAACTTTTA 59.962 38.462 14.67 0.00 0.00 1.52
679 685 3.248602 CAGGTCAGCTGTCAACACTTAAC 59.751 47.826 14.67 0.00 0.00 2.01
681 687 2.434336 ACAGGTCAGCTGTCAACACTTA 59.566 45.455 14.67 0.00 0.00 2.24
682 688 1.210478 ACAGGTCAGCTGTCAACACTT 59.790 47.619 14.67 0.00 0.00 3.16
743 749 4.682778 AGTGGACAGCTAGTTACAACAA 57.317 40.909 0.00 0.00 0.00 2.83
759 765 1.300963 GGCTGCCAGATCAAGTGGA 59.699 57.895 15.17 0.00 37.23 4.02
812 818 4.778143 ATTGACAGGGACCGCGGC 62.778 66.667 28.58 18.35 0.00 6.53
813 819 2.046314 AATTGACAGGGACCGCGG 60.046 61.111 26.86 26.86 0.00 6.46
862 868 5.205759 GGAAATATCCATCCAAAAGCCAG 57.794 43.478 0.00 0.00 45.79 4.85
879 885 3.347216 CGTTGAGATTGGTGAGGGAAAT 58.653 45.455 0.00 0.00 0.00 2.17
899 905 1.070445 CAGCTTATCCTCCCCTGCG 59.930 63.158 0.00 0.00 0.00 5.18
1053 1065 0.032952 AGCTGACGTTACCGCTGAAA 59.967 50.000 0.00 0.00 37.70 2.69
1054 1066 0.388134 GAGCTGACGTTACCGCTGAA 60.388 55.000 0.00 0.00 37.70 3.02
1058 1070 0.109226 AGAAGAGCTGACGTTACCGC 60.109 55.000 0.00 0.00 37.70 5.68
1067 1079 0.895559 TGAGCACGGAGAAGAGCTGA 60.896 55.000 0.00 0.00 37.48 4.26
1110 1123 3.808726 CCTACTGCCACTACTACTACTCG 59.191 52.174 0.00 0.00 0.00 4.18
1111 1124 4.779696 ACCTACTGCCACTACTACTACTC 58.220 47.826 0.00 0.00 0.00 2.59
1135 1225 6.194463 CACGGCAAAGAATAACATCACATAG 58.806 40.000 0.00 0.00 0.00 2.23
1253 1343 3.066760 AGTGCAGCTTTTACACAAAGGAC 59.933 43.478 8.23 0.00 36.76 3.85
1254 1344 3.066621 CAGTGCAGCTTTTACACAAAGGA 59.933 43.478 8.23 0.00 36.76 3.36
1255 1345 3.374745 CAGTGCAGCTTTTACACAAAGG 58.625 45.455 8.23 0.00 36.76 3.11
1256 1346 2.791004 GCAGTGCAGCTTTTACACAAAG 59.209 45.455 11.09 0.00 36.76 2.77
1258 1348 2.023673 AGCAGTGCAGCTTTTACACAA 58.976 42.857 19.20 0.00 43.70 3.33
1259 1349 1.603802 GAGCAGTGCAGCTTTTACACA 59.396 47.619 19.20 0.00 46.75 3.72
1261 1351 1.965935 TGAGCAGTGCAGCTTTTACA 58.034 45.000 19.20 1.50 46.75 2.41
1264 1354 1.612676 TGATGAGCAGTGCAGCTTTT 58.387 45.000 19.20 0.00 46.75 2.27
1268 1370 1.471287 TGATTTGATGAGCAGTGCAGC 59.529 47.619 19.20 9.51 0.00 5.25
1275 1377 7.814107 GGTTTTCTTACATTGATTTGATGAGCA 59.186 33.333 0.00 0.00 0.00 4.26
1319 1424 3.399330 TGCCAGTTTGCTAGTAGTGAAC 58.601 45.455 0.00 4.64 0.00 3.18
1403 1513 9.703892 GATTCTACTACTACTAGATCGGTACAA 57.296 37.037 0.00 0.00 0.00 2.41
1486 1597 1.676006 GTTGGAATAGCACCGATTGGG 59.324 52.381 3.39 0.00 40.75 4.12
1487 1598 2.355756 CAGTTGGAATAGCACCGATTGG 59.644 50.000 0.00 0.00 42.84 3.16
1488 1599 2.355756 CCAGTTGGAATAGCACCGATTG 59.644 50.000 0.00 0.00 37.39 2.67
1489 1600 2.643551 CCAGTTGGAATAGCACCGATT 58.356 47.619 0.00 0.00 37.39 3.34
1530 1641 2.277084 CGGTAACCACATACTTCAGGC 58.723 52.381 0.00 0.00 0.00 4.85
1555 1666 8.777865 TGATTGACTAGTAGAAAAATCCACAG 57.222 34.615 3.59 0.00 0.00 3.66
1644 1772 1.517694 CGCCTGTGATTTGCATGGC 60.518 57.895 0.00 0.00 42.08 4.40
1649 1777 0.734889 ATACTGCGCCTGTGATTTGC 59.265 50.000 4.18 0.00 0.00 3.68
1676 1804 3.624300 CCATCGAGCTCGCGCAAG 61.624 66.667 30.97 16.77 39.10 4.01
1686 1814 2.609825 GCATACAGCACCCATCGAG 58.390 57.895 0.00 0.00 44.79 4.04
1696 1824 4.502282 GCATATCGTCTGATAGCATACAGC 59.498 45.833 0.00 0.00 40.32 4.40
1703 1831 5.649557 AGATTCAGCATATCGTCTGATAGC 58.350 41.667 0.00 0.00 40.32 2.97
1705 1833 7.219484 TGAAGATTCAGCATATCGTCTGATA 57.781 36.000 0.00 0.00 38.90 2.15
1734 1892 3.739300 CGAGCGAAATAAATACCGGTCAT 59.261 43.478 12.40 0.00 46.02 3.06
1771 1929 0.251165 TTAGCCAAGTTGCAGGTCCC 60.251 55.000 0.00 0.00 0.00 4.46
1800 1958 0.532573 CTCGGCTAAAGCTGGAGTGA 59.467 55.000 10.79 0.00 46.99 3.41
1924 2089 4.618489 CCGTACGTAGGAGTACAAAAGTTG 59.382 45.833 16.52 0.00 45.25 3.16
1925 2090 4.518970 TCCGTACGTAGGAGTACAAAAGTT 59.481 41.667 16.52 0.00 45.25 2.66
1926 2091 4.072131 TCCGTACGTAGGAGTACAAAAGT 58.928 43.478 16.52 0.00 45.25 2.66
1927 2092 4.685169 TCCGTACGTAGGAGTACAAAAG 57.315 45.455 16.52 0.00 45.25 2.27
1931 2096 4.201812 CGATTTTCCGTACGTAGGAGTACA 60.202 45.833 16.52 0.00 45.25 2.90
1932 2097 4.034048 TCGATTTTCCGTACGTAGGAGTAC 59.966 45.833 16.52 0.00 42.48 2.73
1933 2098 4.034048 GTCGATTTTCCGTACGTAGGAGTA 59.966 45.833 16.52 7.86 39.22 2.59
1934 2099 3.009723 TCGATTTTCCGTACGTAGGAGT 58.990 45.455 16.52 6.24 39.22 3.85
1935 2100 3.181507 TGTCGATTTTCCGTACGTAGGAG 60.182 47.826 16.52 7.06 39.22 3.69
1936 2101 2.746904 TGTCGATTTTCCGTACGTAGGA 59.253 45.455 16.52 12.36 35.69 2.94
1937 2102 2.848302 GTGTCGATTTTCCGTACGTAGG 59.152 50.000 15.21 8.30 0.00 3.18
1999 2170 2.369394 GGAAGCGTCCCTCAATTCAAT 58.631 47.619 7.56 0.00 38.08 2.57
2000 2171 1.821216 GGAAGCGTCCCTCAATTCAA 58.179 50.000 7.56 0.00 38.08 2.69
2001 2172 0.391130 CGGAAGCGTCCCTCAATTCA 60.391 55.000 13.43 0.00 41.44 2.57
2002 2173 0.391263 ACGGAAGCGTCCCTCAATTC 60.391 55.000 13.43 0.00 41.44 2.17
2003 2174 0.391263 GACGGAAGCGTCCCTCAATT 60.391 55.000 13.43 0.00 41.44 2.32
2004 2175 1.218316 GACGGAAGCGTCCCTCAAT 59.782 57.895 13.43 0.00 41.44 2.57
2005 2176 1.469335 AAGACGGAAGCGTCCCTCAA 61.469 55.000 13.43 0.00 41.44 3.02
2006 2177 1.469335 AAAGACGGAAGCGTCCCTCA 61.469 55.000 13.43 0.00 41.44 3.86
2007 2178 0.736672 GAAAGACGGAAGCGTCCCTC 60.737 60.000 13.43 11.06 41.44 4.30
2008 2179 1.292541 GAAAGACGGAAGCGTCCCT 59.707 57.895 13.43 0.92 41.44 4.20
2009 2180 0.601841 TTGAAAGACGGAAGCGTCCC 60.602 55.000 13.43 0.00 41.44 4.46
2010 2181 1.223187 TTTGAAAGACGGAAGCGTCC 58.777 50.000 8.86 8.86 39.49 4.79
2073 2244 0.249699 CGGGTATGCTGCCACGATTA 60.250 55.000 0.00 0.00 0.00 1.75
2129 2300 3.312697 GGAAATCAATCGAAGTGGTAGCC 59.687 47.826 0.00 0.00 0.00 3.93
2280 2451 0.407528 AGTGAGAGGTGAGCTGGAGA 59.592 55.000 0.00 0.00 0.00 3.71
2281 2452 1.748493 GTAGTGAGAGGTGAGCTGGAG 59.252 57.143 0.00 0.00 0.00 3.86
2282 2453 1.840737 GTAGTGAGAGGTGAGCTGGA 58.159 55.000 0.00 0.00 0.00 3.86
2295 2466 0.322648 TCTCGGTGGTCTCGTAGTGA 59.677 55.000 0.00 0.00 0.00 3.41
2395 2570 7.772166 TGATTGACTGAACAGTAACGATATCT 58.228 34.615 7.46 0.00 42.66 1.98
2396 2571 7.987268 TGATTGACTGAACAGTAACGATATC 57.013 36.000 7.46 1.98 42.66 1.63
2397 2572 8.948631 ATTGATTGACTGAACAGTAACGATAT 57.051 30.769 7.46 0.00 42.66 1.63
2398 2573 8.032451 TGATTGATTGACTGAACAGTAACGATA 58.968 33.333 7.46 0.00 42.66 2.92
2413 2588 6.277605 TGCCATGATTGAATGATTGATTGAC 58.722 36.000 0.00 0.00 0.00 3.18
2416 2591 6.645306 TGTTGCCATGATTGAATGATTGATT 58.355 32.000 0.00 0.00 0.00 2.57
2424 2599 6.128117 GCAGAAAATTGTTGCCATGATTGAAT 60.128 34.615 0.00 0.00 31.79 2.57
2494 2669 1.598601 CACTGCATGCCAAACCAAAAC 59.401 47.619 16.68 0.00 0.00 2.43
2671 2846 1.663702 GTCCACCGTGTCGAACCTG 60.664 63.158 0.00 0.00 0.00 4.00
2797 2972 2.361119 CAGCATTGGATGGATGGTTCTG 59.639 50.000 0.00 0.00 33.30 3.02
2800 2975 1.117150 GCAGCATTGGATGGATGGTT 58.883 50.000 0.00 0.00 33.30 3.67
2808 2983 2.117156 GCAGGACGCAGCATTGGAT 61.117 57.895 0.00 0.00 41.79 3.41
2820 2995 3.807538 CATGCAGCCACGCAGGAC 61.808 66.667 0.00 0.00 46.28 3.85
2821 2996 4.334118 ACATGCAGCCACGCAGGA 62.334 61.111 11.37 0.00 46.28 3.86
2822 2997 4.111016 CACATGCAGCCACGCAGG 62.111 66.667 3.77 3.77 46.99 4.85
2868 3050 1.589414 AGGGCCCCATATATCTCAGC 58.411 55.000 21.43 0.00 0.00 4.26
2901 3083 1.280206 AAAGTACTCACGTTCGCGGC 61.280 55.000 6.13 0.00 46.45 6.53
2945 3133 5.231147 GCAACAGCAAACGATTTTTGTCTAA 59.769 36.000 0.00 0.00 0.00 2.10
2946 3134 4.737765 GCAACAGCAAACGATTTTTGTCTA 59.262 37.500 0.00 0.00 0.00 2.59
2947 3135 3.551485 GCAACAGCAAACGATTTTTGTCT 59.449 39.130 0.00 0.00 0.00 3.41
2948 3136 3.599116 CGCAACAGCAAACGATTTTTGTC 60.599 43.478 0.00 0.00 0.00 3.18
2949 3137 2.281234 CGCAACAGCAAACGATTTTTGT 59.719 40.909 0.00 0.00 0.00 2.83
2950 3138 2.281234 ACGCAACAGCAAACGATTTTTG 59.719 40.909 0.00 0.00 0.00 2.44
2951 3139 2.281234 CACGCAACAGCAAACGATTTTT 59.719 40.909 0.00 0.00 0.00 1.94
2952 3140 1.851666 CACGCAACAGCAAACGATTTT 59.148 42.857 0.00 0.00 0.00 1.82
3049 3237 3.662247 GGACTATGATAACGTCCCTGG 57.338 52.381 0.00 0.00 41.00 4.45
3062 5433 4.457603 TGTTTGTTCATTTCCGGGACTATG 59.542 41.667 0.00 4.07 0.00 2.23
3063 5434 4.658063 TGTTTGTTCATTTCCGGGACTAT 58.342 39.130 0.00 0.00 0.00 2.12
3089 5460 6.693466 TGGACACGAATCATGTTCTTACTAA 58.307 36.000 0.00 0.00 0.00 2.24
3099 5470 2.610833 CCTCACATGGACACGAATCATG 59.389 50.000 0.00 0.00 42.65 3.07
3199 5574 2.711542 ACAATAGGCTCCGGTTTTCTG 58.288 47.619 0.00 0.00 0.00 3.02
3220 5595 2.009051 CACACACACACACACACAGAT 58.991 47.619 0.00 0.00 0.00 2.90
3234 5613 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3235 5614 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3236 5615 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3237 5616 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
3238 5617 2.225491 AGAAACACACACACACACACAC 59.775 45.455 0.00 0.00 0.00 3.82
3239 5618 2.482336 GAGAAACACACACACACACACA 59.518 45.455 0.00 0.00 0.00 3.72
3240 5619 2.159572 GGAGAAACACACACACACACAC 60.160 50.000 0.00 0.00 0.00 3.82
3241 5620 2.080693 GGAGAAACACACACACACACA 58.919 47.619 0.00 0.00 0.00 3.72
3242 5621 1.400494 GGGAGAAACACACACACACAC 59.600 52.381 0.00 0.00 0.00 3.82
3243 5622 1.745232 GGGAGAAACACACACACACA 58.255 50.000 0.00 0.00 0.00 3.72
3244 5623 0.655733 CGGGAGAAACACACACACAC 59.344 55.000 0.00 0.00 0.00 3.82
3245 5624 0.250793 ACGGGAGAAACACACACACA 59.749 50.000 0.00 0.00 0.00 3.72
3246 5625 0.935196 GACGGGAGAAACACACACAC 59.065 55.000 0.00 0.00 0.00 3.82
3247 5626 0.537653 TGACGGGAGAAACACACACA 59.462 50.000 0.00 0.00 0.00 3.72
3248 5627 1.202486 TCTGACGGGAGAAACACACAC 60.202 52.381 0.00 0.00 0.00 3.82
3249 5628 1.116308 TCTGACGGGAGAAACACACA 58.884 50.000 0.00 0.00 0.00 3.72
3250 5629 1.865340 GTTCTGACGGGAGAAACACAC 59.135 52.381 0.38 0.00 33.73 3.82
3251 5630 1.537348 CGTTCTGACGGGAGAAACACA 60.537 52.381 0.38 0.00 45.32 3.72
3252 5631 1.137513 CGTTCTGACGGGAGAAACAC 58.862 55.000 0.38 0.00 45.32 3.32
3253 5632 3.580904 CGTTCTGACGGGAGAAACA 57.419 52.632 0.38 0.00 45.32 2.83
3293 5672 1.551329 GGTCTCTCTCCCTGTGTTCCT 60.551 57.143 0.00 0.00 0.00 3.36
3413 5796 0.534203 GGCAAGTCAAGTCAACCCGA 60.534 55.000 0.00 0.00 0.00 5.14
3452 5851 2.204291 ATTGGAGTGGGCAGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
3453 5852 2.276740 GATTGGAGTGGGCAGGGG 59.723 66.667 0.00 0.00 0.00 4.79
3454 5853 2.276740 GGATTGGAGTGGGCAGGG 59.723 66.667 0.00 0.00 0.00 4.45
3455 5854 2.276740 GGGATTGGAGTGGGCAGG 59.723 66.667 0.00 0.00 0.00 4.85
3456 5855 2.124570 CGGGATTGGAGTGGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
3457 5856 2.933287 ACGGGATTGGAGTGGGCA 60.933 61.111 0.00 0.00 0.00 5.36
3458 5857 2.124695 GACGGGATTGGAGTGGGC 60.125 66.667 0.00 0.00 0.00 5.36
3459 5858 1.522569 GAGACGGGATTGGAGTGGG 59.477 63.158 0.00 0.00 0.00 4.61
3460 5859 1.522569 GGAGACGGGATTGGAGTGG 59.477 63.158 0.00 0.00 0.00 4.00
3461 5860 0.978146 AGGGAGACGGGATTGGAGTG 60.978 60.000 0.00 0.00 0.00 3.51
3462 5861 0.688087 GAGGGAGACGGGATTGGAGT 60.688 60.000 0.00 0.00 0.00 3.85
3463 5862 0.397816 AGAGGGAGACGGGATTGGAG 60.398 60.000 0.00 0.00 0.00 3.86
3464 5863 0.397254 GAGAGGGAGACGGGATTGGA 60.397 60.000 0.00 0.00 0.00 3.53
3465 5864 1.403687 GGAGAGGGAGACGGGATTGG 61.404 65.000 0.00 0.00 0.00 3.16
3466 5865 1.403687 GGGAGAGGGAGACGGGATTG 61.404 65.000 0.00 0.00 0.00 2.67
3495 5894 1.229464 AGCAGGGGAAGAGCAGAGT 60.229 57.895 0.00 0.00 0.00 3.24
3547 5950 5.241403 TGGTTGCAGAATAAAAGGAGAGA 57.759 39.130 0.00 0.00 0.00 3.10
3548 5951 5.964958 TTGGTTGCAGAATAAAAGGAGAG 57.035 39.130 0.00 0.00 0.00 3.20
3549 5952 6.248433 AGATTGGTTGCAGAATAAAAGGAGA 58.752 36.000 0.00 0.00 0.00 3.71
3550 5953 6.521151 AGATTGGTTGCAGAATAAAAGGAG 57.479 37.500 0.00 0.00 0.00 3.69
3552 5955 5.870978 CCAAGATTGGTTGCAGAATAAAAGG 59.129 40.000 3.30 0.00 43.43 3.11
3553 5956 6.956299 CCAAGATTGGTTGCAGAATAAAAG 57.044 37.500 3.30 0.00 43.43 2.27
3759 6166 2.783135 TCAGATGCCCACTCTGAAAAC 58.217 47.619 0.71 0.00 44.59 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.