Multiple sequence alignment - TraesCS3B01G332200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G332200 chr3B 100.000 5774 0 0 757 6530 537694157 537688384 0.000000e+00 10663.0
1 TraesCS3B01G332200 chr3B 100.000 652 0 0 1 652 537694913 537694262 0.000000e+00 1205.0
2 TraesCS3B01G332200 chr3B 96.364 330 7 3 3482 3809 423812765 423813091 7.450000e-149 538.0
3 TraesCS3B01G332200 chr3B 90.179 224 16 6 3588 3809 820904279 820904060 2.980000e-73 287.0
4 TraesCS3B01G332200 chr3B 89.778 225 14 7 3588 3809 265849652 265849870 4.990000e-71 279.0
5 TraesCS3B01G332200 chr3B 89.778 225 14 7 3588 3809 820904096 820903878 4.990000e-71 279.0
6 TraesCS3B01G332200 chr3B 89.333 225 15 7 3588 3809 820903914 820903696 2.320000e-69 274.0
7 TraesCS3B01G332200 chr3D 94.349 2743 97 29 758 3482 411079266 411076564 0.000000e+00 4154.0
8 TraesCS3B01G332200 chr3D 94.442 2087 73 22 3987 6050 411075641 411073575 0.000000e+00 3171.0
9 TraesCS3B01G332200 chr3D 88.955 507 33 6 90 592 576315704 576316191 7.240000e-169 604.0
10 TraesCS3B01G332200 chr3D 93.870 261 13 2 1 260 576315441 576315699 2.210000e-104 390.0
11 TraesCS3B01G332200 chr3D 97.423 194 4 1 3803 3996 411076580 411076388 4.880000e-86 329.0
12 TraesCS3B01G332200 chr3D 86.590 261 26 4 6048 6307 411072201 411071949 4.990000e-71 279.0
13 TraesCS3B01G332200 chr3A 93.147 2758 120 36 758 3482 540043720 540046441 0.000000e+00 3982.0
14 TraesCS3B01G332200 chr3A 95.223 2282 73 17 3800 6050 540046422 540048698 0.000000e+00 3578.0
15 TraesCS3B01G332200 chr3A 85.609 271 31 4 6048 6318 540049957 540050219 1.790000e-70 278.0
16 TraesCS3B01G332200 chr3A 89.474 95 10 0 6224 6318 540050733 540050827 3.200000e-23 121.0
17 TraesCS3B01G332200 chr2B 93.760 625 32 5 1 621 744110470 744111091 0.000000e+00 931.0
18 TraesCS3B01G332200 chr2B 97.765 179 4 0 3469 3647 118598123 118598301 6.360000e-80 309.0
19 TraesCS3B01G332200 chr7A 93.237 621 32 7 1 617 118239071 118238457 0.000000e+00 905.0
20 TraesCS3B01G332200 chr7A 89.934 606 44 4 1 602 566311536 566310944 0.000000e+00 765.0
21 TraesCS3B01G332200 chr7A 89.769 606 45 4 1 602 566300408 566299816 0.000000e+00 760.0
22 TraesCS3B01G332200 chr7A 89.604 606 46 4 1 602 566275773 566275181 0.000000e+00 754.0
23 TraesCS3B01G332200 chr7A 92.562 484 33 2 137 617 724318323 724318806 0.000000e+00 691.0
24 TraesCS3B01G332200 chr7A 98.315 178 1 2 3479 3655 426576593 426576417 1.770000e-80 311.0
25 TraesCS3B01G332200 chr2D 93.575 607 33 5 1 602 110638727 110639332 0.000000e+00 900.0
26 TraesCS3B01G332200 chr2D 93.500 600 34 4 7 602 466807047 466806449 0.000000e+00 887.0
27 TraesCS3B01G332200 chr2D 92.079 606 42 5 1 602 585765622 585765019 0.000000e+00 848.0
28 TraesCS3B01G332200 chr2D 97.268 183 2 3 3473 3654 612538721 612538901 2.290000e-79 307.0
29 TraesCS3B01G332200 chr2D 83.333 90 10 5 1 89 131273479 131273564 1.950000e-10 78.7
30 TraesCS3B01G332200 chr2D 81.915 94 11 4 100 189 493612928 493612837 2.530000e-09 75.0
31 TraesCS3B01G332200 chr2D 92.000 50 4 0 5 54 115594868 115594917 3.270000e-08 71.3
32 TraesCS3B01G332200 chr6D 91.914 606 39 6 1 602 17182781 17183380 0.000000e+00 839.0
33 TraesCS3B01G332200 chr6D 84.375 352 46 5 1 348 466613157 466612811 2.920000e-88 337.0
34 TraesCS3B01G332200 chr6D 88.679 212 24 0 6319 6530 8741133 8741344 6.500000e-65 259.0
35 TraesCS3B01G332200 chr6D 88.208 212 25 0 6319 6530 8723519 8723730 3.020000e-63 254.0
36 TraesCS3B01G332200 chr1A 89.587 605 46 4 1 602 72340676 72341266 0.000000e+00 752.0
37 TraesCS3B01G332200 chr7B 98.864 176 1 1 3482 3657 129222437 129222263 4.920000e-81 313.0
38 TraesCS3B01G332200 chr4A 99.419 172 1 0 3482 3653 564649666 564649495 4.920000e-81 313.0
39 TraesCS3B01G332200 chr4A 89.333 225 15 7 3588 3809 17479434 17479652 2.320000e-69 274.0
40 TraesCS3B01G332200 chr7D 92.202 218 17 0 6313 6530 35194834 35195051 6.360000e-80 309.0
41 TraesCS3B01G332200 chr7D 88.318 214 25 0 6317 6530 626118730 626118943 2.340000e-64 257.0
42 TraesCS3B01G332200 chr5A 99.415 171 0 1 3478 3647 333417002 333417172 6.360000e-80 309.0
43 TraesCS3B01G332200 chr5A 98.851 174 1 1 3481 3654 346188421 346188249 6.360000e-80 309.0
44 TraesCS3B01G332200 chr2A 98.305 177 1 2 3481 3657 133338780 133338606 6.360000e-80 309.0
45 TraesCS3B01G332200 chr1B 90.308 227 16 4 3586 3809 309519133 309518910 6.400000e-75 292.0
46 TraesCS3B01G332200 chr1B 89.333 225 15 7 3588 3809 304518488 304518270 2.320000e-69 274.0
47 TraesCS3B01G332200 chr6B 90.222 225 11 7 3588 3809 227272989 227272773 3.850000e-72 283.0
48 TraesCS3B01G332200 chrUn 88.679 212 24 0 6319 6530 80052394 80052183 6.500000e-65 259.0
49 TraesCS3B01G332200 chrUn 88.208 212 25 0 6319 6530 351901081 351901292 3.020000e-63 254.0
50 TraesCS3B01G332200 chrUn 100.000 28 0 0 161 188 267642293 267642266 1.200000e-02 52.8
51 TraesCS3B01G332200 chr4D 88.679 212 24 0 6319 6530 110207494 110207705 6.500000e-65 259.0
52 TraesCS3B01G332200 chr5B 88.679 212 23 1 6319 6530 609857362 609857572 2.340000e-64 257.0
53 TraesCS3B01G332200 chr5D 89.447 199 19 2 6328 6525 382278156 382278353 3.910000e-62 250.0
54 TraesCS3B01G332200 chr5D 82.609 92 9 7 1 89 559101501 559101588 2.530000e-09 75.0
55 TraesCS3B01G332200 chr6A 90.698 43 4 0 150 192 131439864 131439906 2.540000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G332200 chr3B 537688384 537694913 6529 True 5934.00 10663 100.000000 1 6530 2 chr3B.!!$R1 6529
1 TraesCS3B01G332200 chr3B 820903696 820904279 583 True 280.00 287 89.763333 3588 3809 3 chr3B.!!$R2 221
2 TraesCS3B01G332200 chr3D 411071949 411079266 7317 True 1983.25 4154 93.201000 758 6307 4 chr3D.!!$R1 5549
3 TraesCS3B01G332200 chr3D 576315441 576316191 750 False 497.00 604 91.412500 1 592 2 chr3D.!!$F1 591
4 TraesCS3B01G332200 chr3A 540043720 540050827 7107 False 1989.75 3982 90.863250 758 6318 4 chr3A.!!$F1 5560
5 TraesCS3B01G332200 chr2B 744110470 744111091 621 False 931.00 931 93.760000 1 621 1 chr2B.!!$F2 620
6 TraesCS3B01G332200 chr7A 118238457 118239071 614 True 905.00 905 93.237000 1 617 1 chr7A.!!$R1 616
7 TraesCS3B01G332200 chr7A 566310944 566311536 592 True 765.00 765 89.934000 1 602 1 chr7A.!!$R5 601
8 TraesCS3B01G332200 chr7A 566299816 566300408 592 True 760.00 760 89.769000 1 602 1 chr7A.!!$R4 601
9 TraesCS3B01G332200 chr7A 566275181 566275773 592 True 754.00 754 89.604000 1 602 1 chr7A.!!$R3 601
10 TraesCS3B01G332200 chr2D 110638727 110639332 605 False 900.00 900 93.575000 1 602 1 chr2D.!!$F1 601
11 TraesCS3B01G332200 chr2D 466806449 466807047 598 True 887.00 887 93.500000 7 602 1 chr2D.!!$R1 595
12 TraesCS3B01G332200 chr2D 585765019 585765622 603 True 848.00 848 92.079000 1 602 1 chr2D.!!$R3 601
13 TraesCS3B01G332200 chr6D 17182781 17183380 599 False 839.00 839 91.914000 1 602 1 chr6D.!!$F3 601
14 TraesCS3B01G332200 chr1A 72340676 72341266 590 False 752.00 752 89.587000 1 602 1 chr1A.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 547 0.392461 GCTTGTCCCCGATGCAGTAA 60.392 55.000 0.00 0.0 0.00 2.24 F
2028 2241 0.037303 CATGCTCCACTGGGACAAGT 59.963 55.000 0.00 0.0 38.64 3.16 F
3581 3804 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.0 40.08 4.58 F
3623 4028 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.0 31.05 3.01 F
3787 4192 0.680061 GACTTGAACCCGTGACCTCT 59.320 55.000 0.00 0.0 0.00 3.69 F
3808 4213 1.133945 TGGTCACAAGGCAGCAGTTTA 60.134 47.619 0.00 0.0 0.00 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2351 0.323629 CTTTAGCCCCAGTTCGACCA 59.676 55.000 0.00 0.0 0.00 4.02 R
3607 3830 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.0 34.10 3.16 R
4460 5621 1.303948 CCATGCATCACCACCAGGA 59.696 57.895 0.00 0.0 38.69 3.86 R
5072 6251 2.420058 AGCATACCTAACAAGCACCC 57.580 50.000 0.00 0.0 0.00 4.61 R
5505 6689 4.333913 TGCAGCTTGCCTTAATTTTTGA 57.666 36.364 5.82 0.0 44.23 2.69 R
5589 6773 4.506288 CCGTACAAATATTGAGCATGACGA 59.494 41.667 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 150 9.658475 TGTTTCAAAAATTACAACATCTACGAG 57.342 29.630 0.00 0.00 0.00 4.18
324 504 1.691976 CATGCAATGGATCTGGCCAAT 59.308 47.619 7.01 3.18 41.79 3.16
365 547 0.392461 GCTTGTCCCCGATGCAGTAA 60.392 55.000 0.00 0.00 0.00 2.24
400 582 1.895131 GAGGGGAGATGAGAGAGATGC 59.105 57.143 0.00 0.00 0.00 3.91
458 647 3.628646 AAGCAGACGGGGTGGATGC 62.629 63.158 0.00 0.00 37.15 3.91
538 727 1.137086 TGAGGATAAGAACGAGCTGGC 59.863 52.381 0.00 0.00 0.00 4.85
580 769 2.111878 GTGATGAGGCGGATGGGG 59.888 66.667 0.00 0.00 0.00 4.96
594 783 2.027385 GATGGGGGTTGAAAGATCTGC 58.973 52.381 0.00 0.00 0.00 4.26
621 810 3.835395 TGACCACAAGTTTTTCCCAACTT 59.165 39.130 0.00 0.00 46.00 2.66
622 811 4.284746 TGACCACAAGTTTTTCCCAACTTT 59.715 37.500 0.00 0.00 43.17 2.66
623 812 5.221742 TGACCACAAGTTTTTCCCAACTTTT 60.222 36.000 0.00 0.00 43.17 2.27
624 813 5.626142 ACCACAAGTTTTTCCCAACTTTTT 58.374 33.333 0.00 0.00 43.17 1.94
951 1148 1.287425 CCACTTAAATCTCCGGCGAC 58.713 55.000 9.30 0.00 0.00 5.19
977 1174 1.979693 GCTCCAGTGACCGTCCTCT 60.980 63.158 0.00 0.00 0.00 3.69
1137 1334 4.405671 TCCGACGACGCCTCTCCT 62.406 66.667 0.64 0.00 38.29 3.69
1173 1370 3.039526 CCTCCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
1174 1371 2.612251 CTCCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
1259 1456 3.074412 TCTCCTCAAACATTTTCGCTCC 58.926 45.455 0.00 0.00 0.00 4.70
1329 1526 1.734477 CAGAGTGGAAGGACGTGCG 60.734 63.158 0.00 0.00 0.00 5.34
1346 1543 0.869880 GCGTTTTTGCCTGTCCACAC 60.870 55.000 0.00 0.00 0.00 3.82
1355 1552 1.067142 GCCTGTCCACACTCGAACATA 60.067 52.381 0.00 0.00 0.00 2.29
1414 1612 4.940463 TCGACTAAATGCACCACCTATAC 58.060 43.478 0.00 0.00 0.00 1.47
1452 1650 1.306141 ATCCCTCACTTCCGAGCCA 60.306 57.895 0.00 0.00 0.00 4.75
1462 1660 1.062587 CTTCCGAGCCAAATAGCAACG 59.937 52.381 0.00 0.00 35.62 4.10
1521 1719 1.003959 AAATGCCGCGCCCAAAAAT 60.004 47.368 0.00 0.00 0.00 1.82
1558 1756 2.029020 GGGAAAAATGTGTGCTCTTCCC 60.029 50.000 2.09 2.09 43.83 3.97
1559 1757 2.351738 GGAAAAATGTGTGCTCTTCCCG 60.352 50.000 0.00 0.00 0.00 5.14
1560 1758 1.981256 AAAATGTGTGCTCTTCCCGT 58.019 45.000 0.00 0.00 0.00 5.28
1561 1759 1.238439 AAATGTGTGCTCTTCCCGTG 58.762 50.000 0.00 0.00 0.00 4.94
1562 1760 1.237285 AATGTGTGCTCTTCCCGTGC 61.237 55.000 0.00 0.00 0.00 5.34
1563 1761 3.050275 GTGTGCTCTTCCCGTGCC 61.050 66.667 0.00 0.00 0.00 5.01
1564 1762 3.555324 TGTGCTCTTCCCGTGCCA 61.555 61.111 0.00 0.00 0.00 4.92
1565 1763 2.743928 GTGCTCTTCCCGTGCCAG 60.744 66.667 0.00 0.00 0.00 4.85
1566 1764 3.241530 TGCTCTTCCCGTGCCAGT 61.242 61.111 0.00 0.00 0.00 4.00
1697 1895 1.003331 GAGTCGGAGCTATCGTCTGTG 60.003 57.143 11.87 0.00 0.00 3.66
1835 2033 4.502282 GCTGACTTTGACGAGATGTATGAG 59.498 45.833 0.00 0.00 0.00 2.90
1898 2099 8.233190 CAGTATGTTGAGAAAAAGATGAAGGAC 58.767 37.037 0.00 0.00 0.00 3.85
1901 2102 5.997746 TGTTGAGAAAAAGATGAAGGACGAT 59.002 36.000 0.00 0.00 0.00 3.73
1902 2103 7.158697 TGTTGAGAAAAAGATGAAGGACGATA 58.841 34.615 0.00 0.00 0.00 2.92
1904 2105 7.834068 TGAGAAAAAGATGAAGGACGATAAG 57.166 36.000 0.00 0.00 0.00 1.73
1956 2157 4.128643 GGATGAGGAGATCAAGAAAGCAG 58.871 47.826 0.00 0.00 42.53 4.24
2028 2241 0.037303 CATGCTCCACTGGGACAAGT 59.963 55.000 0.00 0.00 38.64 3.16
2036 2249 2.904434 CCACTGGGACAAGTTACTACCT 59.096 50.000 0.00 0.00 38.70 3.08
2136 2351 2.969821 TGGGTTGAATGTAGTGCCTT 57.030 45.000 0.00 0.00 0.00 4.35
2162 2377 2.808906 ACTGGGGCTAAAGATTGGAC 57.191 50.000 0.00 0.00 0.00 4.02
2175 2390 4.696479 AGATTGGACGAGGCAGATTATT 57.304 40.909 0.00 0.00 0.00 1.40
2176 2391 5.808366 AGATTGGACGAGGCAGATTATTA 57.192 39.130 0.00 0.00 0.00 0.98
2235 2451 7.824289 TGCCATATTAGTTAGTTCCATGATAGC 59.176 37.037 0.00 0.00 0.00 2.97
2268 2484 2.497273 GGCATGGTATTTCAGGTTTGCT 59.503 45.455 0.00 0.00 0.00 3.91
2285 2501 5.049267 GGTTTGCTAGTCGTGGTGAAATTTA 60.049 40.000 0.00 0.00 0.00 1.40
2403 2619 1.095807 GCTTATGCCACGAAGGACCC 61.096 60.000 2.86 0.00 41.22 4.46
2412 2628 3.793559 CCACGAAGGACCCAGTAATAAG 58.206 50.000 0.00 0.00 41.22 1.73
2413 2629 3.197116 CCACGAAGGACCCAGTAATAAGT 59.803 47.826 0.00 0.00 41.22 2.24
2442 2658 9.793252 AGAATTTTTCATTCAGTATGTATGTGC 57.207 29.630 0.00 0.00 43.37 4.57
2571 2788 4.038271 TGCCATCAAGAAGATTTGGACT 57.962 40.909 0.00 0.00 33.72 3.85
2579 2796 7.206981 TCAAGAAGATTTGGACTGATTTGTC 57.793 36.000 0.00 0.00 36.31 3.18
2582 2799 7.446001 AGAAGATTTGGACTGATTTGTCTTC 57.554 36.000 0.00 0.00 40.15 2.87
2583 2800 7.000472 AGAAGATTTGGACTGATTTGTCTTCA 59.000 34.615 12.55 0.00 41.51 3.02
2584 2801 7.503566 AGAAGATTTGGACTGATTTGTCTTCAA 59.496 33.333 12.55 0.00 41.51 2.69
2585 2802 7.211966 AGATTTGGACTGATTTGTCTTCAAG 57.788 36.000 0.00 0.00 37.16 3.02
2586 2803 5.772825 TTTGGACTGATTTGTCTTCAAGG 57.227 39.130 0.00 0.00 37.16 3.61
2587 2804 3.754965 TGGACTGATTTGTCTTCAAGGG 58.245 45.455 0.00 0.00 37.16 3.95
2588 2805 3.394274 TGGACTGATTTGTCTTCAAGGGA 59.606 43.478 0.00 0.00 37.16 4.20
2589 2806 4.141274 TGGACTGATTTGTCTTCAAGGGAA 60.141 41.667 0.00 0.00 37.16 3.97
2620 2837 6.647067 CGTTCTGTCTATTTTTCTCTGACCTT 59.353 38.462 0.00 0.00 0.00 3.50
2661 2878 4.833380 GTCAACCAGCTAGATGGACCTATA 59.167 45.833 33.03 9.27 43.57 1.31
2827 3044 5.453339 GCAAGTACCTCTTATGGCTGTCATA 60.453 44.000 0.00 0.00 37.30 2.15
2866 3083 5.536538 ATCGAAGATACAGGACTTCTGCATA 59.463 40.000 0.00 0.00 44.70 3.14
2890 3107 7.042797 AGACTCTTGATTCAGATCTAGAAGC 57.957 40.000 13.06 13.06 41.44 3.86
2893 3110 6.159299 TCTTGATTCAGATCTAGAAGCCTG 57.841 41.667 15.69 5.23 39.89 4.85
2932 3149 3.507233 TGTTTCATCTGTTTGAGGCCATC 59.493 43.478 5.01 0.00 0.00 3.51
2940 3159 3.282021 TGTTTGAGGCCATCTCTATTGC 58.718 45.455 5.01 0.00 42.86 3.56
2976 3195 4.874966 GCAATAGTGAAGCAACATCTCTCT 59.125 41.667 0.00 0.00 0.00 3.10
2977 3196 5.220624 GCAATAGTGAAGCAACATCTCTCTG 60.221 44.000 0.00 0.00 0.00 3.35
3025 3244 9.732130 AATTGGATTCCATCTATTAGAGTTAGC 57.268 33.333 6.15 0.00 31.53 3.09
3099 3321 1.548986 GCGCACATTTGTATCTTGCC 58.451 50.000 0.30 0.00 0.00 4.52
3106 3328 6.513884 CGCACATTTGTATCTTGCCTAATGAT 60.514 38.462 0.00 0.00 0.00 2.45
3206 3428 7.097192 TGTCCTTATCGCCTATGTATTCATTC 58.903 38.462 0.00 0.00 35.70 2.67
3239 3461 4.261197 CCTTATGATTTTCCCGCTTGCTAC 60.261 45.833 0.00 0.00 0.00 3.58
3254 3476 5.983720 CGCTTGCTACCTAGTATTTATGTGT 59.016 40.000 0.00 0.00 0.00 3.72
3311 3533 5.560722 TTGTGAGTTTCCTGGACATCTTA 57.439 39.130 0.00 0.00 0.00 2.10
3342 3564 4.529716 TTGGGAGGGTTGTTAGTCTTTT 57.470 40.909 0.00 0.00 0.00 2.27
3428 3650 4.041691 GGCATGGATGTATAAGTACCCACT 59.958 45.833 0.00 0.00 36.19 4.00
3487 3710 9.524496 TCATCAGTTTAGTAGTTAGTAAGGACA 57.476 33.333 0.00 0.00 0.00 4.02
3488 3711 9.790389 CATCAGTTTAGTAGTTAGTAAGGACAG 57.210 37.037 0.00 0.00 0.00 3.51
3489 3712 9.750783 ATCAGTTTAGTAGTTAGTAAGGACAGA 57.249 33.333 0.00 0.00 0.00 3.41
3490 3713 9.007901 TCAGTTTAGTAGTTAGTAAGGACAGAC 57.992 37.037 0.00 0.00 0.00 3.51
3491 3714 8.242739 CAGTTTAGTAGTTAGTAAGGACAGACC 58.757 40.741 0.00 0.00 39.35 3.85
3492 3715 7.395772 AGTTTAGTAGTTAGTAAGGACAGACCC 59.604 40.741 0.00 0.00 40.05 4.46
3493 3716 5.266709 AGTAGTTAGTAAGGACAGACCCA 57.733 43.478 0.00 0.00 40.05 4.51
3494 3717 5.262804 AGTAGTTAGTAAGGACAGACCCAG 58.737 45.833 0.00 0.00 40.05 4.45
3495 3718 4.129317 AGTTAGTAAGGACAGACCCAGT 57.871 45.455 0.00 0.00 40.05 4.00
3496 3719 3.833070 AGTTAGTAAGGACAGACCCAGTG 59.167 47.826 0.00 0.00 40.05 3.66
3497 3720 0.977395 AGTAAGGACAGACCCAGTGC 59.023 55.000 0.00 0.00 40.05 4.40
3498 3721 0.685097 GTAAGGACAGACCCAGTGCA 59.315 55.000 0.00 0.00 40.05 4.57
3499 3722 1.279271 GTAAGGACAGACCCAGTGCAT 59.721 52.381 0.00 0.00 40.05 3.96
3500 3723 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
3501 3724 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
3502 3725 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
3503 3726 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3504 3727 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
3505 3728 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3506 3729 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3507 3730 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3508 3731 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
3509 3732 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
3510 3733 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
3511 3734 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
3512 3735 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
3513 3736 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
3514 3737 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
3515 3738 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
3516 3739 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3517 3740 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
3518 3741 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
3526 3749 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
3527 3750 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
3528 3751 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
3529 3752 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
3530 3753 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
3531 3754 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
3532 3755 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
3534 3757 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
3535 3758 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
3536 3759 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3537 3760 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
3538 3761 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
3539 3762 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
3540 3763 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
3541 3764 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
3542 3765 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
3543 3766 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
3544 3767 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
3545 3768 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
3546 3769 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
3547 3770 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
3548 3771 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
3549 3772 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
3550 3773 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
3551 3774 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
3552 3775 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
3553 3776 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
3554 3777 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
3555 3778 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
3556 3779 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
3557 3780 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
3558 3781 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
3559 3782 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
3560 3783 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
3561 3784 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
3562 3785 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
3563 3786 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
3564 3787 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
3565 3788 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
3566 3789 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
3567 3790 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
3578 3801 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
3579 3802 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
3580 3803 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
3581 3804 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
3583 3806 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
3584 3807 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
3585 3808 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
3586 3809 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
3601 3824 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
3605 3828 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
3606 3829 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
3607 3830 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
3608 3831 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
3619 3842 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
3623 4028 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
3636 4041 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
3650 4055 3.801997 CCAGGCCTGCCCTCGAAT 61.802 66.667 28.39 0.00 44.09 3.34
3779 4184 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3787 4192 0.680061 GACTTGAACCCGTGACCTCT 59.320 55.000 0.00 0.00 0.00 3.69
3805 4210 1.227102 TTGGTCACAAGGCAGCAGT 59.773 52.632 0.00 0.00 31.73 4.40
3808 4213 1.133945 TGGTCACAAGGCAGCAGTTTA 60.134 47.619 0.00 0.00 0.00 2.01
3809 4214 1.537202 GGTCACAAGGCAGCAGTTTAG 59.463 52.381 0.00 0.00 0.00 1.85
3810 4215 2.222027 GTCACAAGGCAGCAGTTTAGT 58.778 47.619 0.00 0.00 0.00 2.24
3811 4216 3.399330 GTCACAAGGCAGCAGTTTAGTA 58.601 45.455 0.00 0.00 0.00 1.82
3812 4217 3.433615 GTCACAAGGCAGCAGTTTAGTAG 59.566 47.826 0.00 0.00 0.00 2.57
3813 4218 3.071023 TCACAAGGCAGCAGTTTAGTAGT 59.929 43.478 0.00 0.00 0.00 2.73
3815 4220 4.994852 CACAAGGCAGCAGTTTAGTAGTTA 59.005 41.667 0.00 0.00 0.00 2.24
3816 4221 5.120830 CACAAGGCAGCAGTTTAGTAGTTAG 59.879 44.000 0.00 0.00 0.00 2.34
3817 4222 5.221661 ACAAGGCAGCAGTTTAGTAGTTAGT 60.222 40.000 0.00 0.00 0.00 2.24
3818 4223 6.014840 ACAAGGCAGCAGTTTAGTAGTTAGTA 60.015 38.462 0.00 0.00 0.00 1.82
4044 5205 2.571653 ACACCCTAGCTATTGACTTGCA 59.428 45.455 0.00 0.00 0.00 4.08
4049 5210 4.445453 CCTAGCTATTGACTTGCACATGA 58.555 43.478 0.00 0.00 0.00 3.07
4119 5280 8.177456 AGGGTGTTATATCCATATAGACTGTCA 58.823 37.037 10.88 0.00 28.98 3.58
4396 5557 2.992543 CTGAGGCAGATAATAAGAGCGC 59.007 50.000 0.00 0.00 32.44 5.92
4460 5621 1.532868 GAGTCACGCATTGTCTTTGCT 59.467 47.619 0.00 0.00 37.96 3.91
4652 5813 2.329267 TCCTGCTTCCATCGTCCATAT 58.671 47.619 0.00 0.00 0.00 1.78
4660 5821 5.744345 GCTTCCATCGTCCATATTAGTATCG 59.256 44.000 0.00 0.00 0.00 2.92
4771 5941 8.331539 TGCGTCTTAATATAAGTACTTTGACG 57.668 34.615 14.49 19.21 43.91 4.35
4773 5943 7.566508 GCGTCTTAATATAAGTACTTTGACGGC 60.567 40.741 14.49 12.83 42.18 5.68
4861 6031 8.462016 AGATGAAGGTTGCAACTGTTAATTATC 58.538 33.333 27.64 19.11 0.00 1.75
4871 6041 9.624697 TGCAACTGTTAATTATCAGATGAAAAC 57.375 29.630 25.98 14.79 36.87 2.43
4895 6065 8.970691 ACAAAGCATGATTAAACAAGTACATC 57.029 30.769 0.00 0.00 0.00 3.06
4964 6143 5.535333 TGGTTACCATATTAAGCGCTCTAC 58.465 41.667 12.06 0.00 33.04 2.59
5004 6183 8.993121 AGTCAGTTAAGTTTGATCTGTATTGTG 58.007 33.333 0.00 0.00 0.00 3.33
5012 6191 8.165239 AGTTTGATCTGTATTGTGCTTTTGTA 57.835 30.769 0.00 0.00 0.00 2.41
5072 6251 5.050499 CAGCCTTCGTCTGCTTATTATTCAG 60.050 44.000 0.00 0.00 35.12 3.02
5189 6373 3.951775 TTGGTTGGATGTGTTTATGGC 57.048 42.857 0.00 0.00 0.00 4.40
5304 6488 5.944007 GGTATTCCTACAAACATCACTTGGT 59.056 40.000 0.00 0.00 0.00 3.67
5505 6689 1.205893 GACCGGCTGAAGATGAAGACT 59.794 52.381 0.00 0.00 0.00 3.24
5585 6769 8.696043 TTCATCTCCCTTGTTATCAATTATGG 57.304 34.615 0.00 0.00 32.82 2.74
5586 6770 8.044574 TCATCTCCCTTGTTATCAATTATGGA 57.955 34.615 0.00 0.00 32.82 3.41
5588 6772 7.690454 TCTCCCTTGTTATCAATTATGGAGA 57.310 36.000 14.22 14.22 39.18 3.71
5589 6773 8.280258 TCTCCCTTGTTATCAATTATGGAGAT 57.720 34.615 14.22 0.00 38.08 2.75
5804 6994 7.611213 AGTGAAGAAACTATTAATTGTCCCG 57.389 36.000 2.97 0.00 0.00 5.14
5832 7022 0.807667 AAGCTACGCCTCGCTGATTG 60.808 55.000 0.00 0.00 36.45 2.67
5842 7032 4.034048 CGCCTCGCTGATTGTAGTAAATTT 59.966 41.667 0.00 0.00 0.00 1.82
5857 7047 8.774586 TGTAGTAAATTTTTCTTCAGCTCTGTC 58.225 33.333 0.00 0.00 0.00 3.51
5860 7050 8.854117 AGTAAATTTTTCTTCAGCTCTGTCATT 58.146 29.630 0.00 0.00 0.00 2.57
5875 7065 4.279671 TCTGTCATTTGGCAAACCGTTATT 59.720 37.500 16.00 0.00 39.70 1.40
5876 7066 5.473846 TCTGTCATTTGGCAAACCGTTATTA 59.526 36.000 16.00 0.00 39.70 0.98
5901 7095 0.255890 CCTTGGTAGTGGTGGGATGG 59.744 60.000 0.00 0.00 0.00 3.51
5938 7132 2.482864 CAAGGAAGCCGCAATTTGTTT 58.517 42.857 0.00 0.00 0.00 2.83
5939 7133 2.438868 AGGAAGCCGCAATTTGTTTC 57.561 45.000 0.00 0.00 0.00 2.78
5945 7139 2.362077 AGCCGCAATTTGTTTCTGTCTT 59.638 40.909 0.00 0.00 0.00 3.01
6058 8939 4.927267 TTTGGCTCCAGAGGAATTAGAA 57.073 40.909 0.00 0.00 0.00 2.10
6074 8955 6.763610 GGAATTAGAACATGTTCCTCGAAGAT 59.236 38.462 30.34 14.79 40.33 2.40
6080 8961 3.997021 ACATGTTCCTCGAAGATGACAAC 59.003 43.478 15.91 0.00 43.18 3.32
6084 8965 1.413767 CCTCGAAGATGACAACGCCG 61.414 60.000 0.00 0.00 33.89 6.46
6109 8990 0.111639 TTACCCCAGGTCAAACTGCC 59.888 55.000 0.00 0.00 37.09 4.85
6111 8992 2.672996 CCCAGGTCAAACTGCCGG 60.673 66.667 0.00 0.00 37.16 6.13
6122 9003 3.876300 CTGCCGGCACAGTTCTAC 58.124 61.111 29.03 0.00 32.78 2.59
6130 9011 3.123674 CACAGTTCTACGTCTGGGC 57.876 57.895 6.89 0.00 36.17 5.36
6137 9018 0.394488 TCTACGTCTGGGCTGGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
6139 9020 1.859841 TACGTCTGGGCTGGAGAGGA 61.860 60.000 0.00 0.00 0.00 3.71
6148 9029 1.698532 GGCTGGAGAGGATGATCACAT 59.301 52.381 0.00 0.00 39.67 3.21
6152 9033 2.775960 TGGAGAGGATGATCACATTGCT 59.224 45.455 0.00 0.00 36.82 3.91
6153 9034 3.969312 TGGAGAGGATGATCACATTGCTA 59.031 43.478 0.00 0.00 36.82 3.49
6154 9035 4.596212 TGGAGAGGATGATCACATTGCTAT 59.404 41.667 0.00 0.00 36.82 2.97
6155 9036 4.936411 GGAGAGGATGATCACATTGCTATG 59.064 45.833 6.59 6.59 36.82 2.23
6156 9037 5.279859 GGAGAGGATGATCACATTGCTATGA 60.280 44.000 15.23 0.00 36.82 2.15
6157 9038 6.183810 AGAGGATGATCACATTGCTATGAA 57.816 37.500 15.23 3.08 36.82 2.57
6158 9039 6.231951 AGAGGATGATCACATTGCTATGAAG 58.768 40.000 15.23 7.02 36.82 3.02
6159 9040 6.042897 AGAGGATGATCACATTGCTATGAAGA 59.957 38.462 15.23 11.82 36.82 2.87
6210 9091 3.515901 AGCTAAGTCCTTGGAAATCGACT 59.484 43.478 0.00 0.00 37.04 4.18
6211 9092 3.619038 GCTAAGTCCTTGGAAATCGACTG 59.381 47.826 0.00 0.00 36.03 3.51
6242 9123 2.101582 GGTACATCTTGCGGTGATCTCT 59.898 50.000 0.00 0.00 0.00 3.10
6265 9754 5.767816 AAACCGATACAAACTTGCTCTTT 57.232 34.783 0.00 0.00 0.00 2.52
6281 9770 2.291741 CTCTTTGGCAGTTCCACACTTC 59.708 50.000 0.00 0.00 46.55 3.01
6290 9779 0.976641 TTCCACACTTCGGATGCTCT 59.023 50.000 0.00 0.00 30.99 4.09
6292 9781 1.081892 CCACACTTCGGATGCTCTTG 58.918 55.000 0.00 0.00 0.00 3.02
6293 9782 1.338105 CCACACTTCGGATGCTCTTGA 60.338 52.381 0.00 0.00 0.00 3.02
6301 9790 2.166459 TCGGATGCTCTTGATCGACTTT 59.834 45.455 0.00 0.00 0.00 2.66
6307 9796 6.128282 GGATGCTCTTGATCGACTTTTAAACA 60.128 38.462 0.00 0.00 0.00 2.83
6308 9797 6.801539 TGCTCTTGATCGACTTTTAAACAT 57.198 33.333 0.00 0.00 0.00 2.71
6311 9800 7.173218 TGCTCTTGATCGACTTTTAAACATCTT 59.827 33.333 0.00 0.00 0.00 2.40
6318 9807 7.979444 TCGACTTTTAAACATCTTGAGGATT 57.021 32.000 0.00 0.00 31.27 3.01
6319 9808 9.667107 ATCGACTTTTAAACATCTTGAGGATTA 57.333 29.630 0.00 0.00 31.27 1.75
6320 9809 9.151471 TCGACTTTTAAACATCTTGAGGATTAG 57.849 33.333 0.00 0.00 31.27 1.73
6321 9810 8.391106 CGACTTTTAAACATCTTGAGGATTAGG 58.609 37.037 0.00 0.00 31.27 2.69
6322 9811 8.581253 ACTTTTAAACATCTTGAGGATTAGGG 57.419 34.615 0.00 0.00 31.27 3.53
6323 9812 7.122799 ACTTTTAAACATCTTGAGGATTAGGGC 59.877 37.037 0.00 0.00 31.27 5.19
6324 9813 4.870021 AAACATCTTGAGGATTAGGGCT 57.130 40.909 0.00 0.00 31.27 5.19
6325 9814 3.853355 ACATCTTGAGGATTAGGGCTG 57.147 47.619 0.00 0.00 31.27 4.85
6326 9815 2.441001 ACATCTTGAGGATTAGGGCTGG 59.559 50.000 0.00 0.00 31.27 4.85
6327 9816 2.568546 TCTTGAGGATTAGGGCTGGA 57.431 50.000 0.00 0.00 0.00 3.86
6328 9817 2.119495 TCTTGAGGATTAGGGCTGGAC 58.881 52.381 0.00 0.00 0.00 4.02
6329 9818 0.830648 TTGAGGATTAGGGCTGGACG 59.169 55.000 0.00 0.00 0.00 4.79
6330 9819 0.032515 TGAGGATTAGGGCTGGACGA 60.033 55.000 0.00 0.00 0.00 4.20
6331 9820 1.120530 GAGGATTAGGGCTGGACGAA 58.879 55.000 0.00 0.00 0.00 3.85
6332 9821 1.485066 GAGGATTAGGGCTGGACGAAA 59.515 52.381 0.00 0.00 0.00 3.46
6333 9822 1.913419 AGGATTAGGGCTGGACGAAAA 59.087 47.619 0.00 0.00 0.00 2.29
6334 9823 2.092914 AGGATTAGGGCTGGACGAAAAG 60.093 50.000 0.00 0.00 0.00 2.27
6335 9824 1.671328 GATTAGGGCTGGACGAAAAGC 59.329 52.381 0.00 0.00 38.76 3.51
6336 9825 0.690762 TTAGGGCTGGACGAAAAGCT 59.309 50.000 0.00 0.00 39.46 3.74
6337 9826 0.249398 TAGGGCTGGACGAAAAGCTC 59.751 55.000 0.00 0.00 40.40 4.09
6361 9850 2.169563 CGCGAGCATAATGAGCGC 59.830 61.111 0.00 0.00 44.19 5.92
6362 9851 2.305853 CGCGAGCATAATGAGCGCT 61.306 57.895 11.27 11.27 44.91 5.92
6363 9852 1.490692 GCGAGCATAATGAGCGCTC 59.509 57.895 30.42 30.42 46.91 5.03
6365 9854 3.185651 GAGCATAATGAGCGCTCGA 57.814 52.632 30.75 20.47 42.42 4.04
6366 9855 1.707632 GAGCATAATGAGCGCTCGAT 58.292 50.000 30.75 23.63 42.42 3.59
6367 9856 2.868662 GAGCATAATGAGCGCTCGATA 58.131 47.619 30.75 24.90 42.42 2.92
6368 9857 2.851235 GAGCATAATGAGCGCTCGATAG 59.149 50.000 30.75 19.91 42.42 2.08
6369 9858 2.230025 AGCATAATGAGCGCTCGATAGT 59.770 45.455 30.75 16.38 37.01 2.12
6370 9859 2.989840 GCATAATGAGCGCTCGATAGTT 59.010 45.455 30.75 20.77 37.40 2.24
6371 9860 3.430218 GCATAATGAGCGCTCGATAGTTT 59.570 43.478 30.75 18.40 37.40 2.66
6372 9861 4.665142 GCATAATGAGCGCTCGATAGTTTG 60.665 45.833 30.75 20.22 37.40 2.93
6373 9862 2.871182 ATGAGCGCTCGATAGTTTGA 57.129 45.000 30.75 11.74 37.40 2.69
6374 9863 1.909376 TGAGCGCTCGATAGTTTGAC 58.091 50.000 30.75 5.13 37.40 3.18
6375 9864 1.472878 TGAGCGCTCGATAGTTTGACT 59.527 47.619 30.75 0.00 37.40 3.41
6376 9865 2.113289 GAGCGCTCGATAGTTTGACTC 58.887 52.381 23.61 0.00 37.40 3.36
6377 9866 0.840729 GCGCTCGATAGTTTGACTCG 59.159 55.000 0.00 0.00 37.40 4.18
6378 9867 1.794437 GCGCTCGATAGTTTGACTCGT 60.794 52.381 0.00 0.00 34.19 4.18
6379 9868 1.840741 CGCTCGATAGTTTGACTCGTG 59.159 52.381 0.00 0.00 34.19 4.35
6380 9869 1.584308 GCTCGATAGTTTGACTCGTGC 59.416 52.381 3.06 3.06 42.26 5.34
6381 9870 2.732597 GCTCGATAGTTTGACTCGTGCT 60.733 50.000 9.99 0.00 44.15 4.40
6382 9871 3.502920 CTCGATAGTTTGACTCGTGCTT 58.497 45.455 0.00 0.00 34.19 3.91
6383 9872 3.242518 TCGATAGTTTGACTCGTGCTTG 58.757 45.455 0.00 0.00 34.19 4.01
6384 9873 2.987149 CGATAGTTTGACTCGTGCTTGT 59.013 45.455 0.00 0.00 0.00 3.16
6385 9874 3.428870 CGATAGTTTGACTCGTGCTTGTT 59.571 43.478 0.00 0.00 0.00 2.83
6386 9875 4.619760 CGATAGTTTGACTCGTGCTTGTTA 59.380 41.667 0.00 0.00 0.00 2.41
6387 9876 5.220043 CGATAGTTTGACTCGTGCTTGTTAG 60.220 44.000 0.00 0.00 0.00 2.34
6388 9877 3.793559 AGTTTGACTCGTGCTTGTTAGT 58.206 40.909 0.00 0.00 0.00 2.24
6389 9878 4.189231 AGTTTGACTCGTGCTTGTTAGTT 58.811 39.130 0.00 0.00 0.00 2.24
6390 9879 5.353938 AGTTTGACTCGTGCTTGTTAGTTA 58.646 37.500 0.00 0.00 0.00 2.24
6391 9880 5.813672 AGTTTGACTCGTGCTTGTTAGTTAA 59.186 36.000 0.00 0.00 0.00 2.01
6392 9881 6.482308 AGTTTGACTCGTGCTTGTTAGTTAAT 59.518 34.615 0.00 0.00 0.00 1.40
6393 9882 5.839262 TGACTCGTGCTTGTTAGTTAATG 57.161 39.130 0.00 0.00 0.00 1.90
6394 9883 5.534407 TGACTCGTGCTTGTTAGTTAATGA 58.466 37.500 0.00 0.00 0.00 2.57
6395 9884 5.986741 TGACTCGTGCTTGTTAGTTAATGAA 59.013 36.000 0.00 0.00 0.00 2.57
6396 9885 6.073980 TGACTCGTGCTTGTTAGTTAATGAAC 60.074 38.462 0.00 0.00 35.64 3.18
6397 9886 5.107607 ACTCGTGCTTGTTAGTTAATGAACG 60.108 40.000 0.00 0.00 40.76 3.95
6398 9887 4.983538 TCGTGCTTGTTAGTTAATGAACGA 59.016 37.500 0.00 0.00 40.76 3.85
6399 9888 5.462729 TCGTGCTTGTTAGTTAATGAACGAA 59.537 36.000 0.00 0.00 40.76 3.85
6400 9889 5.783654 CGTGCTTGTTAGTTAATGAACGAAG 59.216 40.000 0.00 0.00 40.76 3.79
6401 9890 5.564127 GTGCTTGTTAGTTAATGAACGAAGC 59.436 40.000 19.07 19.07 40.76 3.86
6402 9891 5.086727 GCTTGTTAGTTAATGAACGAAGCC 58.913 41.667 17.28 0.00 40.76 4.35
6403 9892 4.914312 TGTTAGTTAATGAACGAAGCCG 57.086 40.909 0.00 0.00 40.76 5.52
6404 9893 4.558178 TGTTAGTTAATGAACGAAGCCGA 58.442 39.130 0.00 0.00 40.76 5.54
6405 9894 4.989797 TGTTAGTTAATGAACGAAGCCGAA 59.010 37.500 0.00 0.00 40.76 4.30
6406 9895 5.107375 TGTTAGTTAATGAACGAAGCCGAAC 60.107 40.000 0.00 0.00 40.76 3.95
6407 9896 3.395639 AGTTAATGAACGAAGCCGAACA 58.604 40.909 0.00 0.00 40.76 3.18
6408 9897 3.810941 AGTTAATGAACGAAGCCGAACAA 59.189 39.130 0.00 0.00 40.76 2.83
6409 9898 4.454504 AGTTAATGAACGAAGCCGAACAAT 59.545 37.500 0.00 0.00 40.76 2.71
6410 9899 2.900122 ATGAACGAAGCCGAACAATG 57.100 45.000 0.00 0.00 39.50 2.82
6411 9900 1.872388 TGAACGAAGCCGAACAATGA 58.128 45.000 0.00 0.00 39.50 2.57
6412 9901 2.422597 TGAACGAAGCCGAACAATGAT 58.577 42.857 0.00 0.00 39.50 2.45
6413 9902 2.811431 TGAACGAAGCCGAACAATGATT 59.189 40.909 0.00 0.00 39.50 2.57
6414 9903 3.252215 TGAACGAAGCCGAACAATGATTT 59.748 39.130 0.00 0.00 39.50 2.17
6415 9904 3.915437 ACGAAGCCGAACAATGATTTT 57.085 38.095 0.00 0.00 39.50 1.82
6416 9905 4.237349 ACGAAGCCGAACAATGATTTTT 57.763 36.364 0.00 0.00 39.50 1.94
6417 9906 3.980775 ACGAAGCCGAACAATGATTTTTG 59.019 39.130 0.00 0.00 39.50 2.44
6418 9907 3.181541 CGAAGCCGAACAATGATTTTTGC 60.182 43.478 0.00 0.00 38.22 3.68
6419 9908 3.665745 AGCCGAACAATGATTTTTGCT 57.334 38.095 0.00 0.00 0.00 3.91
6420 9909 3.578688 AGCCGAACAATGATTTTTGCTC 58.421 40.909 0.00 0.00 0.00 4.26
6421 9910 2.342354 GCCGAACAATGATTTTTGCTCG 59.658 45.455 3.69 3.69 42.10 5.03
6422 9911 3.564511 CCGAACAATGATTTTTGCTCGT 58.435 40.909 8.56 0.00 41.32 4.18
6423 9912 3.980775 CCGAACAATGATTTTTGCTCGTT 59.019 39.130 8.56 0.00 41.32 3.85
6424 9913 5.150683 CCGAACAATGATTTTTGCTCGTTA 58.849 37.500 8.56 0.00 41.32 3.18
6425 9914 5.627367 CCGAACAATGATTTTTGCTCGTTAA 59.373 36.000 8.56 0.00 41.32 2.01
6426 9915 6.143118 CCGAACAATGATTTTTGCTCGTTAAA 59.857 34.615 8.56 0.00 41.32 1.52
6427 9916 7.306283 CCGAACAATGATTTTTGCTCGTTAAAA 60.306 33.333 8.56 0.00 41.32 1.52
6428 9917 8.213812 CGAACAATGATTTTTGCTCGTTAAAAT 58.786 29.630 2.74 0.00 39.26 1.82
6429 9918 9.862585 GAACAATGATTTTTGCTCGTTAAAATT 57.137 25.926 0.00 0.00 34.91 1.82
6445 9934 9.663904 TCGTTAAAATTAATGAGCATAATGAGC 57.336 29.630 4.16 0.00 34.64 4.26
6446 9935 9.449550 CGTTAAAATTAATGAGCATAATGAGCA 57.550 29.630 0.00 0.00 32.66 4.26
6449 9938 7.941795 AAATTAATGAGCATAATGAGCAAGC 57.058 32.000 0.00 0.00 0.00 4.01
6450 9939 6.644248 ATTAATGAGCATAATGAGCAAGCA 57.356 33.333 0.00 0.00 0.00 3.91
6451 9940 4.994907 AATGAGCATAATGAGCAAGCAA 57.005 36.364 0.00 0.00 0.00 3.91
6452 9941 4.994907 ATGAGCATAATGAGCAAGCAAA 57.005 36.364 0.00 0.00 0.00 3.68
6453 9942 4.100707 TGAGCATAATGAGCAAGCAAAC 57.899 40.909 0.00 0.00 0.00 2.93
6454 9943 3.506844 TGAGCATAATGAGCAAGCAAACA 59.493 39.130 0.00 0.00 0.00 2.83
6455 9944 4.022155 TGAGCATAATGAGCAAGCAAACAA 60.022 37.500 0.00 0.00 0.00 2.83
6456 9945 4.491676 AGCATAATGAGCAAGCAAACAAG 58.508 39.130 0.00 0.00 0.00 3.16
6457 9946 4.021719 AGCATAATGAGCAAGCAAACAAGT 60.022 37.500 0.00 0.00 0.00 3.16
6458 9947 4.687483 GCATAATGAGCAAGCAAACAAGTT 59.313 37.500 0.00 0.00 0.00 2.66
6459 9948 5.178067 GCATAATGAGCAAGCAAACAAGTTT 59.822 36.000 0.00 0.00 0.00 2.66
6460 9949 6.617105 GCATAATGAGCAAGCAAACAAGTTTC 60.617 38.462 0.00 0.00 0.00 2.78
6461 9950 3.865011 TGAGCAAGCAAACAAGTTTCA 57.135 38.095 0.00 0.00 0.00 2.69
6462 9951 4.389890 TGAGCAAGCAAACAAGTTTCAT 57.610 36.364 0.00 0.00 0.00 2.57
6463 9952 4.114073 TGAGCAAGCAAACAAGTTTCATG 58.886 39.130 0.00 0.00 0.00 3.07
6464 9953 4.142204 TGAGCAAGCAAACAAGTTTCATGA 60.142 37.500 0.00 0.00 0.00 3.07
6465 9954 4.365723 AGCAAGCAAACAAGTTTCATGAG 58.634 39.130 0.00 0.00 0.00 2.90
6466 9955 3.060070 GCAAGCAAACAAGTTTCATGAGC 60.060 43.478 0.00 0.00 0.00 4.26
6467 9956 4.365723 CAAGCAAACAAGTTTCATGAGCT 58.634 39.130 0.00 0.00 0.00 4.09
6468 9957 5.522456 CAAGCAAACAAGTTTCATGAGCTA 58.478 37.500 7.57 0.00 0.00 3.32
6469 9958 5.772825 AGCAAACAAGTTTCATGAGCTAA 57.227 34.783 0.00 0.00 0.00 3.09
6470 9959 5.523369 AGCAAACAAGTTTCATGAGCTAAC 58.477 37.500 0.00 0.00 0.00 2.34
6471 9960 5.300286 AGCAAACAAGTTTCATGAGCTAACT 59.700 36.000 5.60 5.60 33.76 2.24
6472 9961 5.626955 GCAAACAAGTTTCATGAGCTAACTC 59.373 40.000 10.86 0.00 43.76 3.01
6473 9962 5.597813 AACAAGTTTCATGAGCTAACTCG 57.402 39.130 10.86 3.93 46.69 4.18
6474 9963 4.632153 ACAAGTTTCATGAGCTAACTCGT 58.368 39.130 10.86 4.50 46.69 4.18
6475 9964 5.057149 ACAAGTTTCATGAGCTAACTCGTT 58.943 37.500 10.86 0.00 46.69 3.85
6476 9965 5.527582 ACAAGTTTCATGAGCTAACTCGTTT 59.472 36.000 10.86 0.00 46.69 3.60
6477 9966 6.704493 ACAAGTTTCATGAGCTAACTCGTTTA 59.296 34.615 10.86 0.00 46.69 2.01
6478 9967 6.952935 AGTTTCATGAGCTAACTCGTTTAG 57.047 37.500 5.60 3.14 46.69 1.85
6489 9978 6.570690 CTAACTCGTTTAGCTCGCTAATTT 57.429 37.500 11.73 4.48 38.20 1.82
6490 9979 5.857822 AACTCGTTTAGCTCGCTAATTTT 57.142 34.783 11.73 0.29 38.20 1.82
6491 9980 5.451828 ACTCGTTTAGCTCGCTAATTTTC 57.548 39.130 11.73 3.82 38.20 2.29
6492 9981 4.927425 ACTCGTTTAGCTCGCTAATTTTCA 59.073 37.500 11.73 0.00 38.20 2.69
6493 9982 5.407387 ACTCGTTTAGCTCGCTAATTTTCAA 59.593 36.000 11.73 0.00 38.20 2.69
6494 9983 6.073440 ACTCGTTTAGCTCGCTAATTTTCAAA 60.073 34.615 11.73 0.00 38.20 2.69
6495 9984 6.660722 TCGTTTAGCTCGCTAATTTTCAAAA 58.339 32.000 11.73 0.00 38.20 2.44
6496 9985 6.795114 TCGTTTAGCTCGCTAATTTTCAAAAG 59.205 34.615 11.73 1.07 38.20 2.27
6497 9986 6.577427 CGTTTAGCTCGCTAATTTTCAAAAGT 59.423 34.615 11.73 0.00 38.20 2.66
6498 9987 7.742963 CGTTTAGCTCGCTAATTTTCAAAAGTA 59.257 33.333 11.73 0.00 38.20 2.24
6499 9988 9.556030 GTTTAGCTCGCTAATTTTCAAAAGTAT 57.444 29.630 11.73 0.00 38.20 2.12
6500 9989 9.769093 TTTAGCTCGCTAATTTTCAAAAGTATC 57.231 29.630 11.73 0.00 38.20 2.24
6501 9990 7.377766 AGCTCGCTAATTTTCAAAAGTATCA 57.622 32.000 0.00 0.00 0.00 2.15
6502 9991 7.244192 AGCTCGCTAATTTTCAAAAGTATCAC 58.756 34.615 0.00 0.00 0.00 3.06
6503 9992 7.021196 GCTCGCTAATTTTCAAAAGTATCACA 58.979 34.615 0.00 0.00 0.00 3.58
6504 9993 7.698130 GCTCGCTAATTTTCAAAAGTATCACAT 59.302 33.333 0.00 0.00 0.00 3.21
6505 9994 8.894409 TCGCTAATTTTCAAAAGTATCACATG 57.106 30.769 0.00 0.00 0.00 3.21
6506 9995 8.726068 TCGCTAATTTTCAAAAGTATCACATGA 58.274 29.630 0.00 0.00 0.00 3.07
6507 9996 9.003112 CGCTAATTTTCAAAAGTATCACATGAG 57.997 33.333 0.00 0.00 0.00 2.90
6511 10000 8.641498 ATTTTCAAAAGTATCACATGAGACCT 57.359 30.769 0.00 0.00 36.99 3.85
6512 10001 7.672983 TTTCAAAAGTATCACATGAGACCTC 57.327 36.000 0.00 0.00 36.99 3.85
6513 10002 6.611613 TCAAAAGTATCACATGAGACCTCT 57.388 37.500 0.00 0.00 36.99 3.69
6514 10003 7.718334 TCAAAAGTATCACATGAGACCTCTA 57.282 36.000 0.00 0.00 36.99 2.43
6515 10004 7.776107 TCAAAAGTATCACATGAGACCTCTAG 58.224 38.462 0.00 0.00 36.99 2.43
6516 10005 7.397476 TCAAAAGTATCACATGAGACCTCTAGT 59.603 37.037 0.00 0.00 36.99 2.57
6517 10006 6.952773 AAGTATCACATGAGACCTCTAGTC 57.047 41.667 0.00 0.00 46.71 2.59
6528 10017 4.344359 GACCTCTAGTCCAAATCATCCC 57.656 50.000 0.00 0.00 39.84 3.85
6529 10018 3.711704 GACCTCTAGTCCAAATCATCCCA 59.288 47.826 0.00 0.00 39.84 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 110 1.403679 TGAAACAAGGGTCTTGTTGCG 59.596 47.619 21.79 0.00 40.09 4.85
147 150 1.137086 TGCAGGAATACGGAGAAGAGC 59.863 52.381 0.00 0.00 0.00 4.09
286 466 4.522971 CCTACTTCAAGGCTCCGC 57.477 61.111 0.00 0.00 0.00 5.54
365 547 3.140143 TCCCCTCTCCTCCTTACTATGT 58.860 50.000 0.00 0.00 0.00 2.29
458 647 4.083271 GGTGGAATCGTTTTCTTCTCCTTG 60.083 45.833 0.00 0.00 0.00 3.61
538 727 3.958822 GACGCGTGTACTCGTGGGG 62.959 68.421 28.08 14.14 44.13 4.96
567 756 3.727258 CAACCCCCATCCGCCTCA 61.727 66.667 0.00 0.00 0.00 3.86
580 769 0.322546 ACCCGGCAGATCTTTCAACC 60.323 55.000 0.00 0.00 0.00 3.77
594 783 1.066454 GAAAAACTTGTGGTCACCCGG 59.934 52.381 0.00 0.00 0.00 5.73
756 945 3.485877 GCTTGCTTACGCTATTCCAGTTG 60.486 47.826 0.00 0.00 36.97 3.16
788 977 1.461559 TAACAAAAATACGGGCCGGG 58.538 50.000 31.78 12.20 0.00 5.73
840 1034 4.574828 TGTCTTCCTCCTTTCTTTTTCACG 59.425 41.667 0.00 0.00 0.00 4.35
841 1035 5.590663 AGTGTCTTCCTCCTTTCTTTTTCAC 59.409 40.000 0.00 0.00 0.00 3.18
842 1036 5.755849 AGTGTCTTCCTCCTTTCTTTTTCA 58.244 37.500 0.00 0.00 0.00 2.69
844 1038 5.133941 GGAGTGTCTTCCTCCTTTCTTTTT 58.866 41.667 0.00 0.00 44.29 1.94
849 1044 1.673329 GCGGAGTGTCTTCCTCCTTTC 60.673 57.143 5.04 0.00 45.29 2.62
936 1133 4.819082 CGGTCGCCGGAGATTTAA 57.181 55.556 12.23 0.00 44.15 1.52
1059 1256 2.100989 GTTGTGGGGATACGAGAGAGT 58.899 52.381 0.00 0.00 37.60 3.24
1209 1406 1.375523 GTTTGGGACGTCGATGGCT 60.376 57.895 11.00 0.00 0.00 4.75
1238 1435 3.074412 GGAGCGAAAATGTTTGAGGAGA 58.926 45.455 0.00 0.00 0.00 3.71
1259 1456 3.367743 TCGTCCGTTGGGTCGAGG 61.368 66.667 0.00 0.00 46.41 4.63
1329 1526 1.268539 CGAGTGTGGACAGGCAAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
1346 1543 3.123804 CCGGAAGATGGTTATGTTCGAG 58.876 50.000 0.00 0.00 37.43 4.04
1355 1552 1.683917 CGATCTCTCCGGAAGATGGTT 59.316 52.381 24.69 9.43 32.19 3.67
1452 1650 0.802494 CCTTCCGCACGTTGCTATTT 59.198 50.000 8.07 0.00 42.25 1.40
1462 1660 0.727398 GCAACAGTATCCTTCCGCAC 59.273 55.000 0.00 0.00 0.00 5.34
1637 1835 1.826385 CTTCCAACCTCCGCTTCAAT 58.174 50.000 0.00 0.00 0.00 2.57
1697 1895 1.739562 CTCGAGAACAGCCACAGCC 60.740 63.158 6.58 0.00 41.25 4.85
1742 1940 4.023107 TCCTCGATAAGTTCATCATCGGTC 60.023 45.833 6.04 0.00 41.38 4.79
1835 2033 3.181480 GGTCAGTAAGCTCCTCATCAGTC 60.181 52.174 0.00 0.00 0.00 3.51
1908 2109 8.739039 CCACTTGGTTTCATTCATGTTATTAGA 58.261 33.333 0.00 0.00 0.00 2.10
1909 2110 7.975616 CCCACTTGGTTTCATTCATGTTATTAG 59.024 37.037 0.00 0.00 0.00 1.73
1910 2111 7.671819 TCCCACTTGGTTTCATTCATGTTATTA 59.328 33.333 0.00 0.00 34.77 0.98
1911 2112 6.496565 TCCCACTTGGTTTCATTCATGTTATT 59.503 34.615 0.00 0.00 34.77 1.40
1912 2113 6.015918 TCCCACTTGGTTTCATTCATGTTAT 58.984 36.000 0.00 0.00 34.77 1.89
1925 2126 2.044793 TCTCCTCATCCCACTTGGTT 57.955 50.000 0.00 0.00 34.77 3.67
1956 2157 2.438075 CAGCTGGCCCTTCTCTGC 60.438 66.667 5.57 0.00 0.00 4.26
2036 2249 6.875469 AGGGAGATATAGATTCCACTAACCA 58.125 40.000 0.00 0.00 32.50 3.67
2136 2351 0.323629 CTTTAGCCCCAGTTCGACCA 59.676 55.000 0.00 0.00 0.00 4.02
2235 2451 7.999679 TGAAATACCATGCCAAAGAAATCTAG 58.000 34.615 0.00 0.00 0.00 2.43
2243 2459 4.806640 AACCTGAAATACCATGCCAAAG 57.193 40.909 0.00 0.00 0.00 2.77
2292 2508 8.237811 ACAAACAATCTCATTAAACCTGAGTT 57.762 30.769 4.84 0.00 40.79 3.01
2293 2509 7.823745 ACAAACAATCTCATTAAACCTGAGT 57.176 32.000 4.84 0.00 40.79 3.41
2295 2511 9.295825 ACATACAAACAATCTCATTAAACCTGA 57.704 29.630 0.00 0.00 0.00 3.86
2296 2512 9.559958 GACATACAAACAATCTCATTAAACCTG 57.440 33.333 0.00 0.00 0.00 4.00
2297 2513 9.520515 AGACATACAAACAATCTCATTAAACCT 57.479 29.630 0.00 0.00 0.00 3.50
2340 2556 6.593770 ACCAAAATGAAAACAACTCAAACCTC 59.406 34.615 0.00 0.00 0.00 3.85
2341 2557 6.472016 ACCAAAATGAAAACAACTCAAACCT 58.528 32.000 0.00 0.00 0.00 3.50
2582 2799 1.002087 ACAGAACGCCTACTTCCCTTG 59.998 52.381 0.00 0.00 0.00 3.61
2583 2800 1.275573 GACAGAACGCCTACTTCCCTT 59.724 52.381 0.00 0.00 0.00 3.95
2584 2801 0.896226 GACAGAACGCCTACTTCCCT 59.104 55.000 0.00 0.00 0.00 4.20
2585 2802 0.896226 AGACAGAACGCCTACTTCCC 59.104 55.000 0.00 0.00 0.00 3.97
2586 2803 4.388378 AATAGACAGAACGCCTACTTCC 57.612 45.455 0.00 0.00 0.00 3.46
2587 2804 6.590677 AGAAAAATAGACAGAACGCCTACTTC 59.409 38.462 0.00 0.00 0.00 3.01
2588 2805 6.465084 AGAAAAATAGACAGAACGCCTACTT 58.535 36.000 0.00 0.00 0.00 2.24
2589 2806 6.038997 AGAAAAATAGACAGAACGCCTACT 57.961 37.500 0.00 0.00 0.00 2.57
2590 2807 6.035112 CAGAGAAAAATAGACAGAACGCCTAC 59.965 42.308 0.00 0.00 0.00 3.18
2591 2808 6.071560 TCAGAGAAAAATAGACAGAACGCCTA 60.072 38.462 0.00 0.00 0.00 3.93
2592 2809 4.932200 CAGAGAAAAATAGACAGAACGCCT 59.068 41.667 0.00 0.00 0.00 5.52
2593 2810 4.929808 TCAGAGAAAAATAGACAGAACGCC 59.070 41.667 0.00 0.00 0.00 5.68
2594 2811 5.163943 GGTCAGAGAAAAATAGACAGAACGC 60.164 44.000 0.00 0.00 0.00 4.84
2595 2812 6.159988 AGGTCAGAGAAAAATAGACAGAACG 58.840 40.000 0.00 0.00 0.00 3.95
2620 2837 8.698973 TGGTTGACCATAACTTATCTTTGAAA 57.301 30.769 0.00 0.00 42.01 2.69
2631 2848 4.141620 CCATCTAGCTGGTTGACCATAACT 60.142 45.833 9.54 4.78 46.46 2.24
2652 2869 8.570038 TGTAAGGTGGAAATATTATAGGTCCA 57.430 34.615 2.28 2.28 36.02 4.02
2661 2878 6.777091 TGCTGCATATGTAAGGTGGAAATATT 59.223 34.615 0.00 0.00 0.00 1.28
2846 3063 5.896678 AGTCTATGCAGAAGTCCTGTATCTT 59.103 40.000 0.00 0.00 43.39 2.40
2866 3083 6.040842 GGCTTCTAGATCTGAATCAAGAGTCT 59.959 42.308 5.18 0.00 34.07 3.24
2893 3110 9.265901 AGATGAAACATAATATGACTGTGCTAC 57.734 33.333 7.33 0.00 0.00 3.58
2932 3149 0.753111 GGGGGCTTGTGGCAATAGAG 60.753 60.000 0.00 0.00 44.01 2.43
2940 3159 1.000233 TATTGCAGGGGGCTTGTGG 60.000 57.895 0.00 0.00 45.15 4.17
2976 3195 5.939764 ATCTTGTATTGCTACTGGAGACA 57.060 39.130 0.00 0.00 39.59 3.41
2977 3196 8.768955 CAATTATCTTGTATTGCTACTGGAGAC 58.231 37.037 0.00 0.00 0.00 3.36
3022 3241 9.733556 TTGAAGTGAACTAATTATGGAAAGCTA 57.266 29.630 0.00 0.00 0.00 3.32
3099 3321 5.059833 GGACAAACAGGAGGCTATCATTAG 58.940 45.833 0.00 0.00 0.00 1.73
3106 3328 0.324943 GCTGGACAAACAGGAGGCTA 59.675 55.000 0.00 0.00 38.90 3.93
3206 3428 6.874134 CGGGAAAATCATAAGGGTATCAGTAG 59.126 42.308 0.00 0.00 0.00 2.57
3239 3461 9.769093 GCAGTAAACAAACACATAAATACTAGG 57.231 33.333 0.00 0.00 0.00 3.02
3283 3505 4.821805 TGTCCAGGAAACTCACAAAGATTC 59.178 41.667 0.00 0.00 40.21 2.52
3311 3533 0.627469 ACCCTCCCAATATGGTGCCT 60.627 55.000 0.00 0.00 35.17 4.75
3342 3564 2.588596 CATGCCCAGCGACGCATA 60.589 61.111 23.70 3.27 43.75 3.14
3394 3616 4.895668 ACATCCATGCCAACAATTTCTT 57.104 36.364 0.00 0.00 0.00 2.52
3482 3705 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
3483 3706 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3484 3707 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3485 3708 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3486 3709 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3487 3710 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3488 3711 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
3489 3712 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
3490 3713 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
3491 3714 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
3492 3715 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
3493 3716 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
3494 3717 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
3495 3718 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
3496 3719 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
3497 3720 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
3498 3721 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
3499 3722 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
3500 3723 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
3501 3724 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
3502 3725 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
3509 3732 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
3510 3733 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
3511 3734 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
3512 3735 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
3513 3736 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
3514 3737 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
3515 3738 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
3517 3740 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
3518 3741 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
3519 3742 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
3520 3743 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
3521 3744 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
3522 3745 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
3523 3746 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
3524 3747 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
3525 3748 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
3526 3749 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
3527 3750 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
3528 3751 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
3529 3752 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
3530 3753 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
3531 3754 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
3532 3755 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
3533 3756 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
3534 3757 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
3535 3758 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
3536 3759 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
3537 3760 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
3538 3761 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
3539 3762 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
3540 3763 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
3541 3764 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
3542 3765 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
3543 3766 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
3544 3767 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
3545 3768 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
3546 3769 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
3547 3770 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
3548 3771 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
3549 3772 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
3559 3782 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
3560 3783 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
3561 3784 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
3562 3785 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
3563 3786 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
3564 3787 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
3565 3788 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
3566 3789 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
3567 3790 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
3568 3791 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
3569 3792 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
3570 3793 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
3571 3794 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
3572 3795 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
3583 3806 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
3584 3807 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
3585 3808 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
3586 3809 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
3594 3817 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
3601 3824 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
3605 3828 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
3606 3829 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
3607 3830 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
3608 3831 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
3610 3833 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
3611 3834 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
3613 3836 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
3614 3837 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
3616 3839 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
3619 3842 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
3636 4041 1.025041 CTTTTATTCGAGGGCAGGCC 58.975 55.000 4.33 4.33 0.00 5.19
3638 4043 1.680338 CCCTTTTATTCGAGGGCAGG 58.320 55.000 0.00 0.00 45.72 4.85
3646 4051 0.740737 CCAGGCTGCCCTTTTATTCG 59.259 55.000 16.57 0.00 40.33 3.34
3647 4052 1.478105 CACCAGGCTGCCCTTTTATTC 59.522 52.381 16.57 0.00 40.33 1.75
3648 4053 1.560505 CACCAGGCTGCCCTTTTATT 58.439 50.000 16.57 0.00 40.33 1.40
3649 4054 0.972471 GCACCAGGCTGCCCTTTTAT 60.972 55.000 16.57 0.00 40.33 1.40
3650 4055 1.606313 GCACCAGGCTGCCCTTTTA 60.606 57.895 16.57 0.00 40.33 1.52
3660 4065 3.819188 GAGCTACATGCACCAGGC 58.181 61.111 0.00 0.00 45.94 4.85
3695 4100 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3787 4192 0.395586 AACTGCTGCCTTGTGACCAA 60.396 50.000 0.00 0.00 0.00 3.67
3811 4216 9.209175 CAGCAGTATTTTTCTTCAGTACTAACT 57.791 33.333 0.00 0.00 35.91 2.24
3812 4217 8.989980 ACAGCAGTATTTTTCTTCAGTACTAAC 58.010 33.333 0.00 0.00 0.00 2.34
3813 4218 9.555727 AACAGCAGTATTTTTCTTCAGTACTAA 57.444 29.630 0.00 0.00 0.00 2.24
3815 4220 9.209175 CTAACAGCAGTATTTTTCTTCAGTACT 57.791 33.333 0.00 0.00 0.00 2.73
3816 4221 7.958025 GCTAACAGCAGTATTTTTCTTCAGTAC 59.042 37.037 0.00 0.00 41.89 2.73
3817 4222 7.878127 AGCTAACAGCAGTATTTTTCTTCAGTA 59.122 33.333 0.38 0.00 45.56 2.74
3818 4223 6.712547 AGCTAACAGCAGTATTTTTCTTCAGT 59.287 34.615 0.38 0.00 45.56 3.41
3900 4305 8.519799 AACCCAAATGAATACCAACTGTATAG 57.480 34.615 0.00 0.00 39.28 1.31
3905 4310 7.461182 TCTAAACCCAAATGAATACCAACTG 57.539 36.000 0.00 0.00 0.00 3.16
4119 5280 3.858638 ACAGGGAATATCAAAAGGACCCT 59.141 43.478 0.00 0.00 45.77 4.34
4148 5309 6.068010 AGTCAAAATACATCAACCACAGGAA 58.932 36.000 0.00 0.00 0.00 3.36
4304 5465 4.714802 TCCGAGACCATCTTATCCTCAAAA 59.285 41.667 0.00 0.00 0.00 2.44
4365 5526 8.668510 TTATTATCTGCCTCAGAAAGTTCATC 57.331 34.615 0.27 0.00 44.04 2.92
4396 5557 2.283298 CAGGTGGATCATTCAACTCGG 58.717 52.381 0.00 0.00 28.24 4.63
4460 5621 1.303948 CCATGCATCACCACCAGGA 59.696 57.895 0.00 0.00 38.69 3.86
4652 5813 4.311606 TGCAACAAACTGAGCGATACTAA 58.688 39.130 0.00 0.00 0.00 2.24
4660 5821 3.730715 GTGTTACATGCAACAAACTGAGC 59.269 43.478 13.07 0.00 39.98 4.26
4773 5943 3.119245 CCCTGAATTTGAAGCATGGACTG 60.119 47.826 0.00 0.00 0.00 3.51
4821 5991 3.558321 CCTTCATCTAACGGGTGTTCCAA 60.558 47.826 0.00 0.00 39.54 3.53
4861 6031 8.980610 TGTTTAATCATGCTTTGTTTTCATCTG 58.019 29.630 0.00 0.00 0.00 2.90
4871 6041 9.630098 AAGATGTACTTGTTTAATCATGCTTTG 57.370 29.630 0.00 0.00 37.45 2.77
4895 6065 7.855904 ACAGATCGTTTAGCAAACTAACAAAAG 59.144 33.333 9.17 0.00 38.11 2.27
4898 6068 6.854496 ACAGATCGTTTAGCAAACTAACAA 57.146 33.333 9.17 0.00 38.11 2.83
5004 6183 4.023707 ACTGTCAAGTGCAGATACAAAAGC 60.024 41.667 8.94 0.00 37.40 3.51
5023 6202 3.758554 ACTTGTCAGCAAACTTTCACTGT 59.241 39.130 0.00 0.00 33.73 3.55
5072 6251 2.420058 AGCATACCTAACAAGCACCC 57.580 50.000 0.00 0.00 0.00 4.61
5230 6414 9.502091 AAGCCAAAGAACGAATATAGCATATAA 57.498 29.630 0.00 0.00 0.00 0.98
5505 6689 4.333913 TGCAGCTTGCCTTAATTTTTGA 57.666 36.364 5.82 0.00 44.23 2.69
5584 6768 5.468072 ACAAATATTGAGCATGACGATCTCC 59.532 40.000 0.00 0.00 0.00 3.71
5585 6769 6.536731 ACAAATATTGAGCATGACGATCTC 57.463 37.500 0.00 0.00 0.00 2.75
5586 6770 6.144563 CGTACAAATATTGAGCATGACGATCT 59.855 38.462 0.00 0.00 0.00 2.75
5588 6772 5.177511 CCGTACAAATATTGAGCATGACGAT 59.822 40.000 0.00 0.00 0.00 3.73
5589 6773 4.506288 CCGTACAAATATTGAGCATGACGA 59.494 41.667 0.00 0.00 0.00 4.20
5832 7022 8.774586 TGACAGAGCTGAAGAAAAATTTACTAC 58.225 33.333 4.21 0.00 0.00 2.73
5842 7032 3.254166 GCCAAATGACAGAGCTGAAGAAA 59.746 43.478 4.21 0.00 0.00 2.52
5853 7043 2.507339 AACGGTTTGCCAAATGACAG 57.493 45.000 0.00 0.00 34.09 3.51
5857 7047 5.923684 ACAAGTAATAACGGTTTGCCAAATG 59.076 36.000 0.00 0.00 34.09 2.32
5860 7050 4.023021 GGACAAGTAATAACGGTTTGCCAA 60.023 41.667 0.00 0.00 34.09 4.52
5875 7065 2.635915 CCACCACTACCAAGGACAAGTA 59.364 50.000 0.00 0.00 0.00 2.24
5876 7066 1.420138 CCACCACTACCAAGGACAAGT 59.580 52.381 0.00 0.00 0.00 3.16
5901 7095 3.068024 TCCTTGCCAAAACAGATTGTCAC 59.932 43.478 0.00 0.00 0.00 3.67
5929 7123 9.251792 TCATCATTTCAAGACAGAAACAAATTG 57.748 29.630 0.00 0.00 40.03 2.32
5938 7132 7.662669 TGTCATTTCTCATCATTTCAAGACAGA 59.337 33.333 0.00 0.00 0.00 3.41
5939 7133 7.813645 TGTCATTTCTCATCATTTCAAGACAG 58.186 34.615 0.00 0.00 0.00 3.51
5945 7139 6.809689 GCACAATGTCATTTCTCATCATTTCA 59.190 34.615 0.00 0.00 0.00 2.69
6011 7209 7.955918 ACTGCTTATTCCTTTTTCAAACTCAT 58.044 30.769 0.00 0.00 0.00 2.90
6020 7218 5.928976 AGCCAAAACTGCTTATTCCTTTTT 58.071 33.333 0.00 0.00 34.87 1.94
6032 7230 0.250901 TCCTCTGGAGCCAAAACTGC 60.251 55.000 0.00 0.00 0.00 4.40
6058 8939 3.961480 TGTCATCTTCGAGGAACATGT 57.039 42.857 0.00 0.00 0.00 3.21
6074 8955 0.651551 GTAAACACACGGCGTTGTCA 59.348 50.000 21.65 13.40 0.00 3.58
6080 8961 2.280933 TGGGGTAAACACACGGCG 60.281 61.111 4.80 4.80 0.00 6.46
6084 8965 2.351706 TTGACCTGGGGTAAACACAC 57.648 50.000 0.00 0.00 35.25 3.82
6109 8990 0.732880 CCAGACGTAGAACTGTGCCG 60.733 60.000 0.00 0.00 34.98 5.69
6111 8992 1.014564 GCCCAGACGTAGAACTGTGC 61.015 60.000 0.00 0.00 33.84 4.57
6122 9003 1.760086 ATCCTCTCCAGCCCAGACG 60.760 63.158 0.00 0.00 0.00 4.18
6130 9011 3.139850 GCAATGTGATCATCCTCTCCAG 58.860 50.000 0.00 0.00 32.56 3.86
6137 9018 7.605309 TGTATCTTCATAGCAATGTGATCATCC 59.395 37.037 0.00 0.00 34.50 3.51
6139 9020 7.935210 TGTGTATCTTCATAGCAATGTGATCAT 59.065 33.333 0.00 0.00 34.50 2.45
6148 9029 7.834068 GAAGACTTGTGTATCTTCATAGCAA 57.166 36.000 8.71 0.00 46.73 3.91
6183 9064 6.049149 CGATTTCCAAGGACTTAGCTCAATA 58.951 40.000 0.00 0.00 0.00 1.90
6184 9065 4.878397 CGATTTCCAAGGACTTAGCTCAAT 59.122 41.667 0.00 0.00 0.00 2.57
6210 9091 3.676049 GCAAGATGTACCACGAGTGATCA 60.676 47.826 4.59 0.00 0.00 2.92
6211 9092 2.860735 GCAAGATGTACCACGAGTGATC 59.139 50.000 4.59 0.12 0.00 2.92
6242 9123 6.293735 CCAAAGAGCAAGTTTGTATCGGTTTA 60.294 38.462 5.16 0.00 33.75 2.01
6265 9754 1.227823 CCGAAGTGTGGAACTGCCA 60.228 57.895 0.00 0.00 46.96 4.92
6281 9770 2.215907 AAGTCGATCAAGAGCATCCG 57.784 50.000 0.00 0.00 33.66 4.18
6290 9779 7.659799 TCCTCAAGATGTTTAAAAGTCGATCAA 59.340 33.333 0.00 0.00 0.00 2.57
6292 9781 7.596749 TCCTCAAGATGTTTAAAAGTCGATC 57.403 36.000 0.00 0.00 0.00 3.69
6293 9782 8.567285 AATCCTCAAGATGTTTAAAAGTCGAT 57.433 30.769 0.00 0.00 34.56 3.59
6301 9790 6.122277 CAGCCCTAATCCTCAAGATGTTTAA 58.878 40.000 0.00 0.00 34.56 1.52
6307 9796 2.708325 GTCCAGCCCTAATCCTCAAGAT 59.292 50.000 0.00 0.00 36.48 2.40
6308 9797 2.119495 GTCCAGCCCTAATCCTCAAGA 58.881 52.381 0.00 0.00 0.00 3.02
6311 9800 0.032515 TCGTCCAGCCCTAATCCTCA 60.033 55.000 0.00 0.00 0.00 3.86
6318 9807 0.249398 GAGCTTTTCGTCCAGCCCTA 59.751 55.000 0.00 0.00 36.62 3.53
6319 9808 1.003233 GAGCTTTTCGTCCAGCCCT 60.003 57.895 0.00 0.00 36.62 5.19
6320 9809 2.391389 CGAGCTTTTCGTCCAGCCC 61.391 63.158 0.00 0.00 44.27 5.19
6321 9810 3.169198 CGAGCTTTTCGTCCAGCC 58.831 61.111 0.00 0.00 44.27 4.85
6342 9831 1.771656 CGCTCATTATGCTCGCGAG 59.228 57.895 31.37 31.37 45.99 5.03
6343 9832 2.302952 GCGCTCATTATGCTCGCGA 61.303 57.895 20.62 9.26 45.99 5.87
6344 9833 2.169563 GCGCTCATTATGCTCGCG 59.830 61.111 15.09 15.09 45.88 5.87
6345 9834 1.490692 GAGCGCTCATTATGCTCGC 59.509 57.895 31.91 17.89 44.80 5.03
6348 9837 2.230025 ACTATCGAGCGCTCATTATGCT 59.770 45.455 34.69 13.71 42.73 3.79
6349 9838 2.600731 ACTATCGAGCGCTCATTATGC 58.399 47.619 34.69 9.13 0.00 3.14
6350 9839 4.681483 TCAAACTATCGAGCGCTCATTATG 59.319 41.667 34.69 22.15 0.00 1.90
6351 9840 4.681942 GTCAAACTATCGAGCGCTCATTAT 59.318 41.667 34.69 25.28 0.00 1.28
6352 9841 4.042398 GTCAAACTATCGAGCGCTCATTA 58.958 43.478 34.69 23.35 0.00 1.90
6353 9842 2.860735 GTCAAACTATCGAGCGCTCATT 59.139 45.455 34.69 23.48 0.00 2.57
6354 9843 2.099921 AGTCAAACTATCGAGCGCTCAT 59.900 45.455 34.69 26.78 0.00 2.90
6355 9844 1.472878 AGTCAAACTATCGAGCGCTCA 59.527 47.619 34.69 22.54 0.00 4.26
6356 9845 2.113289 GAGTCAAACTATCGAGCGCTC 58.887 52.381 27.64 27.64 0.00 5.03
6357 9846 1.532090 CGAGTCAAACTATCGAGCGCT 60.532 52.381 11.27 11.27 38.72 5.92
6358 9847 0.840729 CGAGTCAAACTATCGAGCGC 59.159 55.000 0.00 0.00 38.72 5.92
6359 9848 1.840741 CACGAGTCAAACTATCGAGCG 59.159 52.381 0.30 0.00 39.66 5.03
6360 9849 1.584308 GCACGAGTCAAACTATCGAGC 59.416 52.381 0.30 0.63 43.56 5.03
6361 9850 3.138205 AGCACGAGTCAAACTATCGAG 57.862 47.619 0.30 0.00 39.66 4.04
6362 9851 3.242518 CAAGCACGAGTCAAACTATCGA 58.757 45.455 0.30 0.00 39.66 3.59
6363 9852 2.987149 ACAAGCACGAGTCAAACTATCG 59.013 45.455 0.00 0.00 42.04 2.92
6364 9853 4.992381 AACAAGCACGAGTCAAACTATC 57.008 40.909 0.00 0.00 0.00 2.08
6365 9854 5.539048 ACTAACAAGCACGAGTCAAACTAT 58.461 37.500 0.00 0.00 0.00 2.12
6366 9855 4.940463 ACTAACAAGCACGAGTCAAACTA 58.060 39.130 0.00 0.00 0.00 2.24
6367 9856 3.793559 ACTAACAAGCACGAGTCAAACT 58.206 40.909 0.00 0.00 0.00 2.66
6368 9857 4.531659 AACTAACAAGCACGAGTCAAAC 57.468 40.909 0.00 0.00 0.00 2.93
6369 9858 6.480651 TCATTAACTAACAAGCACGAGTCAAA 59.519 34.615 0.00 0.00 0.00 2.69
6370 9859 5.986741 TCATTAACTAACAAGCACGAGTCAA 59.013 36.000 0.00 0.00 0.00 3.18
6371 9860 5.534407 TCATTAACTAACAAGCACGAGTCA 58.466 37.500 0.00 0.00 0.00 3.41
6372 9861 6.297353 GTTCATTAACTAACAAGCACGAGTC 58.703 40.000 0.00 0.00 32.54 3.36
6373 9862 5.107607 CGTTCATTAACTAACAAGCACGAGT 60.108 40.000 0.00 0.00 33.15 4.18
6374 9863 5.118050 TCGTTCATTAACTAACAAGCACGAG 59.882 40.000 0.00 0.00 33.15 4.18
6375 9864 4.983538 TCGTTCATTAACTAACAAGCACGA 59.016 37.500 0.00 0.00 33.15 4.35
6376 9865 5.258685 TCGTTCATTAACTAACAAGCACG 57.741 39.130 0.00 0.00 33.15 5.34
6377 9866 5.564127 GCTTCGTTCATTAACTAACAAGCAC 59.436 40.000 19.81 5.75 38.35 4.40
6378 9867 5.334569 GGCTTCGTTCATTAACTAACAAGCA 60.335 40.000 22.56 1.74 39.17 3.91
6379 9868 5.086727 GGCTTCGTTCATTAACTAACAAGC 58.913 41.667 18.31 18.31 38.08 4.01
6380 9869 5.119588 TCGGCTTCGTTCATTAACTAACAAG 59.880 40.000 3.46 6.27 33.15 3.16
6381 9870 4.989797 TCGGCTTCGTTCATTAACTAACAA 59.010 37.500 3.46 0.00 33.15 2.83
6382 9871 4.558178 TCGGCTTCGTTCATTAACTAACA 58.442 39.130 3.46 0.00 33.15 2.41
6383 9872 5.107375 TGTTCGGCTTCGTTCATTAACTAAC 60.107 40.000 0.00 0.00 33.15 2.34
6384 9873 4.989797 TGTTCGGCTTCGTTCATTAACTAA 59.010 37.500 0.00 0.00 33.15 2.24
6385 9874 4.558178 TGTTCGGCTTCGTTCATTAACTA 58.442 39.130 0.00 0.00 33.15 2.24
6386 9875 3.395639 TGTTCGGCTTCGTTCATTAACT 58.604 40.909 0.00 0.00 33.15 2.24
6387 9876 3.799137 TGTTCGGCTTCGTTCATTAAC 57.201 42.857 0.00 0.00 35.06 2.01
6388 9877 4.452795 TCATTGTTCGGCTTCGTTCATTAA 59.547 37.500 0.00 0.00 35.06 1.40
6389 9878 3.997681 TCATTGTTCGGCTTCGTTCATTA 59.002 39.130 0.00 0.00 35.06 1.90
6390 9879 2.811431 TCATTGTTCGGCTTCGTTCATT 59.189 40.909 0.00 0.00 35.06 2.57
6391 9880 2.422597 TCATTGTTCGGCTTCGTTCAT 58.577 42.857 0.00 0.00 35.06 2.57
6392 9881 1.872388 TCATTGTTCGGCTTCGTTCA 58.128 45.000 0.00 0.00 35.06 3.18
6393 9882 3.471495 AATCATTGTTCGGCTTCGTTC 57.529 42.857 0.00 0.00 35.06 3.95
6394 9883 3.915437 AAATCATTGTTCGGCTTCGTT 57.085 38.095 0.00 0.00 35.06 3.85
6395 9884 3.915437 AAAATCATTGTTCGGCTTCGT 57.085 38.095 0.00 0.00 35.06 3.85
6396 9885 3.181541 GCAAAAATCATTGTTCGGCTTCG 60.182 43.478 0.00 0.00 32.80 3.79
6397 9886 3.989817 AGCAAAAATCATTGTTCGGCTTC 59.010 39.130 0.00 0.00 32.80 3.86
6398 9887 3.989817 GAGCAAAAATCATTGTTCGGCTT 59.010 39.130 0.00 0.00 32.19 4.35
6399 9888 3.578688 GAGCAAAAATCATTGTTCGGCT 58.421 40.909 0.00 0.00 32.19 5.52
6400 9889 3.978352 GAGCAAAAATCATTGTTCGGC 57.022 42.857 0.00 0.00 32.19 5.54
6403 9892 9.862585 AATTTTAACGAGCAAAAATCATTGTTC 57.137 25.926 0.00 0.00 34.93 3.18
6419 9908 9.663904 GCTCATTATGCTCATTAATTTTAACGA 57.336 29.630 0.00 0.00 0.00 3.85
6420 9909 9.449550 TGCTCATTATGCTCATTAATTTTAACG 57.550 29.630 0.00 0.00 0.00 3.18
6423 9912 9.467258 GCTTGCTCATTATGCTCATTAATTTTA 57.533 29.630 0.00 0.00 0.00 1.52
6424 9913 7.982919 TGCTTGCTCATTATGCTCATTAATTTT 59.017 29.630 0.00 0.00 0.00 1.82
6425 9914 7.494211 TGCTTGCTCATTATGCTCATTAATTT 58.506 30.769 0.00 0.00 0.00 1.82
6426 9915 7.046292 TGCTTGCTCATTATGCTCATTAATT 57.954 32.000 0.00 0.00 0.00 1.40
6427 9916 6.644248 TGCTTGCTCATTATGCTCATTAAT 57.356 33.333 0.00 0.00 0.00 1.40
6428 9917 6.453926 TTGCTTGCTCATTATGCTCATTAA 57.546 33.333 0.00 0.00 0.00 1.40
6429 9918 6.127675 TGTTTGCTTGCTCATTATGCTCATTA 60.128 34.615 0.00 0.00 0.00 1.90
6430 9919 4.994907 TTGCTTGCTCATTATGCTCATT 57.005 36.364 0.00 0.00 0.00 2.57
6431 9920 4.158949 TGTTTGCTTGCTCATTATGCTCAT 59.841 37.500 0.00 0.00 0.00 2.90
6432 9921 3.506844 TGTTTGCTTGCTCATTATGCTCA 59.493 39.130 0.00 0.00 0.00 4.26
6433 9922 4.100707 TGTTTGCTTGCTCATTATGCTC 57.899 40.909 0.00 0.00 0.00 4.26
6434 9923 4.021719 ACTTGTTTGCTTGCTCATTATGCT 60.022 37.500 0.00 0.00 0.00 3.79
6435 9924 4.240096 ACTTGTTTGCTTGCTCATTATGC 58.760 39.130 0.00 0.00 0.00 3.14
6436 9925 6.421501 TGAAACTTGTTTGCTTGCTCATTATG 59.578 34.615 3.27 0.00 0.00 1.90
6437 9926 6.514947 TGAAACTTGTTTGCTTGCTCATTAT 58.485 32.000 3.27 0.00 0.00 1.28
6438 9927 5.900425 TGAAACTTGTTTGCTTGCTCATTA 58.100 33.333 3.27 0.00 0.00 1.90
6439 9928 4.757594 TGAAACTTGTTTGCTTGCTCATT 58.242 34.783 3.27 0.00 0.00 2.57
6440 9929 4.389890 TGAAACTTGTTTGCTTGCTCAT 57.610 36.364 3.27 0.00 0.00 2.90
6441 9930 3.865011 TGAAACTTGTTTGCTTGCTCA 57.135 38.095 3.27 0.00 0.00 4.26
6442 9931 4.362279 TCATGAAACTTGTTTGCTTGCTC 58.638 39.130 3.27 0.00 0.00 4.26
6443 9932 4.365723 CTCATGAAACTTGTTTGCTTGCT 58.634 39.130 3.27 0.00 0.00 3.91
6444 9933 3.060070 GCTCATGAAACTTGTTTGCTTGC 60.060 43.478 3.27 0.00 0.00 4.01
6445 9934 4.365723 AGCTCATGAAACTTGTTTGCTTG 58.634 39.130 3.27 4.95 0.00 4.01
6446 9935 4.660789 AGCTCATGAAACTTGTTTGCTT 57.339 36.364 3.27 0.00 0.00 3.91
6447 9936 5.300286 AGTTAGCTCATGAAACTTGTTTGCT 59.700 36.000 5.60 8.04 29.25 3.91
6448 9937 5.523369 AGTTAGCTCATGAAACTTGTTTGC 58.477 37.500 5.60 1.07 29.25 3.68
6449 9938 5.848036 CGAGTTAGCTCATGAAACTTGTTTG 59.152 40.000 11.58 0.00 41.71 2.93
6450 9939 5.527582 ACGAGTTAGCTCATGAAACTTGTTT 59.472 36.000 19.50 0.00 42.51 2.83
6451 9940 5.057149 ACGAGTTAGCTCATGAAACTTGTT 58.943 37.500 19.50 9.16 42.51 2.83
6452 9941 4.632153 ACGAGTTAGCTCATGAAACTTGT 58.368 39.130 19.50 19.50 41.09 3.16
6453 9942 5.597813 AACGAGTTAGCTCATGAAACTTG 57.402 39.130 18.52 18.52 41.71 3.16
6454 9943 7.352719 CTAAACGAGTTAGCTCATGAAACTT 57.647 36.000 11.58 0.83 41.71 2.66
6455 9944 6.952935 CTAAACGAGTTAGCTCATGAAACT 57.047 37.500 10.38 10.38 41.71 2.66
6466 9955 6.570690 AAATTAGCGAGCTAAACGAGTTAG 57.429 37.500 19.66 0.00 41.21 2.34
6467 9956 6.587226 TGAAAATTAGCGAGCTAAACGAGTTA 59.413 34.615 19.66 3.43 41.21 2.24
6468 9957 5.407387 TGAAAATTAGCGAGCTAAACGAGTT 59.593 36.000 19.66 7.95 41.21 3.01
6469 9958 4.927425 TGAAAATTAGCGAGCTAAACGAGT 59.073 37.500 19.66 2.31 41.21 4.18
6470 9959 5.450376 TGAAAATTAGCGAGCTAAACGAG 57.550 39.130 19.66 0.00 41.21 4.18
6471 9960 5.849357 TTGAAAATTAGCGAGCTAAACGA 57.151 34.783 19.66 9.84 41.21 3.85
6472 9961 6.577427 ACTTTTGAAAATTAGCGAGCTAAACG 59.423 34.615 19.66 5.65 41.21 3.60
6473 9962 7.853377 ACTTTTGAAAATTAGCGAGCTAAAC 57.147 32.000 19.66 12.38 41.21 2.01
6474 9963 9.769093 GATACTTTTGAAAATTAGCGAGCTAAA 57.231 29.630 19.66 2.68 41.21 1.85
6475 9964 8.941977 TGATACTTTTGAAAATTAGCGAGCTAA 58.058 29.630 18.34 18.34 41.95 3.09
6476 9965 8.388103 GTGATACTTTTGAAAATTAGCGAGCTA 58.612 33.333 0.00 0.00 0.00 3.32
6477 9966 7.094805 TGTGATACTTTTGAAAATTAGCGAGCT 60.095 33.333 2.25 2.25 0.00 4.09
6478 9967 7.021196 TGTGATACTTTTGAAAATTAGCGAGC 58.979 34.615 0.00 0.00 0.00 5.03
6479 9968 9.003112 CATGTGATACTTTTGAAAATTAGCGAG 57.997 33.333 0.00 0.00 0.00 5.03
6480 9969 8.726068 TCATGTGATACTTTTGAAAATTAGCGA 58.274 29.630 0.00 0.00 0.00 4.93
6481 9970 8.894409 TCATGTGATACTTTTGAAAATTAGCG 57.106 30.769 0.00 0.00 0.00 4.26
6485 9974 9.082313 AGGTCTCATGTGATACTTTTGAAAATT 57.918 29.630 0.02 0.00 0.00 1.82
6486 9975 8.641498 AGGTCTCATGTGATACTTTTGAAAAT 57.359 30.769 0.02 0.00 0.00 1.82
6487 9976 7.939039 AGAGGTCTCATGTGATACTTTTGAAAA 59.061 33.333 0.02 0.00 0.00 2.29
6488 9977 7.453393 AGAGGTCTCATGTGATACTTTTGAAA 58.547 34.615 0.02 0.00 0.00 2.69
6489 9978 7.009179 AGAGGTCTCATGTGATACTTTTGAA 57.991 36.000 0.02 0.00 0.00 2.69
6490 9979 6.611613 AGAGGTCTCATGTGATACTTTTGA 57.388 37.500 0.02 0.00 0.00 2.69
6491 9980 7.551585 ACTAGAGGTCTCATGTGATACTTTTG 58.448 38.462 0.00 2.86 0.00 2.44
6492 9981 7.147811 GGACTAGAGGTCTCATGTGATACTTTT 60.148 40.741 0.00 0.11 43.97 2.27
6493 9982 6.322712 GGACTAGAGGTCTCATGTGATACTTT 59.677 42.308 0.00 1.66 43.97 2.66
6494 9983 5.830991 GGACTAGAGGTCTCATGTGATACTT 59.169 44.000 0.00 0.00 43.97 2.24
6495 9984 5.103898 TGGACTAGAGGTCTCATGTGATACT 60.104 44.000 0.00 3.02 43.97 2.12
6496 9985 5.133941 TGGACTAGAGGTCTCATGTGATAC 58.866 45.833 0.00 0.00 43.97 2.24
6497 9986 5.388599 TGGACTAGAGGTCTCATGTGATA 57.611 43.478 0.00 0.00 43.97 2.15
6498 9987 4.256983 TGGACTAGAGGTCTCATGTGAT 57.743 45.455 0.00 0.00 43.97 3.06
6499 9988 3.739401 TGGACTAGAGGTCTCATGTGA 57.261 47.619 0.00 0.00 43.97 3.58
6500 9989 4.808414 TTTGGACTAGAGGTCTCATGTG 57.192 45.455 0.00 0.00 43.97 3.21
6501 9990 5.026121 TGATTTGGACTAGAGGTCTCATGT 58.974 41.667 0.00 0.00 43.97 3.21
6502 9991 5.604758 TGATTTGGACTAGAGGTCTCATG 57.395 43.478 0.00 0.00 43.97 3.07
6503 9992 5.306678 GGATGATTTGGACTAGAGGTCTCAT 59.693 44.000 0.00 0.00 43.97 2.90
6504 9993 4.651503 GGATGATTTGGACTAGAGGTCTCA 59.348 45.833 0.00 0.00 43.97 3.27
6505 9994 4.039852 GGGATGATTTGGACTAGAGGTCTC 59.960 50.000 0.00 0.00 43.97 3.36
6506 9995 3.970640 GGGATGATTTGGACTAGAGGTCT 59.029 47.826 0.00 0.00 43.97 3.85
6507 9996 3.711704 TGGGATGATTTGGACTAGAGGTC 59.288 47.826 0.00 0.00 43.79 3.85
6508 9997 3.736094 TGGGATGATTTGGACTAGAGGT 58.264 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.