Multiple sequence alignment - TraesCS3B01G331700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G331700 chr3B 100.000 9014 0 0 1 9014 536995019 536986006 0.000000e+00 16646.0
1 TraesCS3B01G331700 chr3B 93.939 99 5 1 3046 3143 512457515 512457417 2.030000e-31 148.0
2 TraesCS3B01G331700 chr3A 95.486 4231 139 19 4244 8452 540964531 540968731 0.000000e+00 6708.0
3 TraesCS3B01G331700 chr3A 95.496 3086 91 19 1 3053 540958982 540962052 0.000000e+00 4885.0
4 TraesCS3B01G331700 chr3A 91.316 1140 61 11 3139 4258 540962052 540963173 0.000000e+00 1522.0
5 TraesCS3B01G331700 chr3A 92.541 362 24 2 8450 8811 540969032 540969390 4.830000e-142 516.0
6 TraesCS3B01G331700 chr3A 94.495 218 11 1 8797 9014 540969407 540969623 1.450000e-87 335.0
7 TraesCS3B01G331700 chr3D 97.504 3486 58 8 4876 8352 410670064 410666599 0.000000e+00 5928.0
8 TraesCS3B01G331700 chr3D 95.031 1751 57 11 1 1740 410675456 410673725 0.000000e+00 2724.0
9 TraesCS3B01G331700 chr3D 97.372 1332 28 3 1734 3058 410673605 410672274 0.000000e+00 2259.0
10 TraesCS3B01G331700 chr3D 95.199 1104 40 7 3783 4877 410671322 410670223 0.000000e+00 1733.0
11 TraesCS3B01G331700 chr3D 95.915 612 15 4 3138 3740 410672277 410671667 0.000000e+00 983.0
12 TraesCS3B01G331700 chr3D 92.730 674 43 5 8345 9014 410666423 410665752 0.000000e+00 968.0
13 TraesCS3B01G331700 chr3D 79.522 293 43 13 3658 3940 47206753 47207038 9.240000e-45 193.0
14 TraesCS3B01G331700 chr2A 83.280 311 41 5 3637 3942 4179974 4179670 8.920000e-70 276.0
15 TraesCS3B01G331700 chr1B 80.906 309 44 13 3636 3935 472410241 472410543 7.040000e-56 230.0
16 TraesCS3B01G331700 chr1B 95.960 99 3 1 3055 3152 687408335 687408237 9.370000e-35 159.0
17 TraesCS3B01G331700 chr1B 94.845 97 4 1 3051 3146 47517435 47517339 5.640000e-32 150.0
18 TraesCS3B01G331700 chr7D 79.814 322 48 15 3622 3933 121138145 121137831 1.520000e-52 219.0
19 TraesCS3B01G331700 chr4B 80.198 303 51 8 3637 3933 258762638 258762339 1.520000e-52 219.0
20 TraesCS3B01G331700 chr4B 97.368 38 1 0 3599 3636 51130401 51130438 2.100000e-06 65.8
21 TraesCS3B01G331700 chr6A 79.934 304 51 9 3636 3933 380538095 380537796 1.970000e-51 215.0
22 TraesCS3B01G331700 chr5D 79.934 304 49 10 3637 3933 228833256 228833554 7.090000e-51 213.0
23 TraesCS3B01G331700 chr5D 87.097 124 12 4 3018 3139 299400717 299400838 4.390000e-28 137.0
24 TraesCS3B01G331700 chr5B 91.150 113 10 0 3047 3159 331307497 331307385 4.360000e-33 154.0
25 TraesCS3B01G331700 chr5A 96.739 92 3 0 3051 3142 376542008 376541917 4.360000e-33 154.0
26 TraesCS3B01G331700 chr5A 91.509 106 9 0 3047 3152 673184703 673184598 7.290000e-31 147.0
27 TraesCS3B01G331700 chr7B 96.703 91 3 0 3049 3139 427291864 427291954 1.570000e-32 152.0
28 TraesCS3B01G331700 chr4A 93.939 99 5 1 3046 3143 723335557 723335655 2.030000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G331700 chr3B 536986006 536995019 9013 True 16646.0 16646 100.000000 1 9014 1 chr3B.!!$R2 9013
1 TraesCS3B01G331700 chr3A 540958982 540969623 10641 False 2793.2 6708 93.866800 1 9014 5 chr3A.!!$F1 9013
2 TraesCS3B01G331700 chr3D 410665752 410675456 9704 True 2432.5 5928 95.625167 1 9014 6 chr3D.!!$R1 9013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 182 0.111832 ACGGACTCCACAGTACTCCA 59.888 55.000 0.00 0.00 29.89 3.86 F
170 183 0.526662 CGGACTCCACAGTACTCCAC 59.473 60.000 0.00 0.00 29.89 4.02 F
1851 2028 0.750182 AGTCACCAAAACCACGTGGG 60.750 55.000 36.47 21.37 39.39 4.61 F
3134 3315 5.064962 CGCTCTTATATTAGTCTACGGAGGG 59.935 48.000 0.00 0.00 0.00 4.30 F
3703 3901 2.926778 AGAGGAATAGAGTGGCATGC 57.073 50.000 9.90 9.90 0.00 4.06 F
4549 6431 0.670546 CCGTCCACGTGAAATCAGCT 60.671 55.000 19.30 0.00 37.74 4.24 F
4816 6706 0.040646 ACACCCGGTCATACAGGAGA 59.959 55.000 0.00 0.00 35.32 3.71 F
6518 8583 1.153549 GAAGAACGCGATGGCCTCT 60.154 57.895 15.93 1.26 35.02 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 2028 0.947244 CTTTCCCATCATACAGCCGC 59.053 55.000 0.00 0.0 0.00 6.53 R
1978 2155 4.216902 TGTCTTCATTGGCAAGAATCACAG 59.783 41.667 5.96 0.0 31.60 3.66 R
3651 3848 2.327568 CTGCATTTTACAAACCCTGCG 58.672 47.619 0.00 0.0 32.42 5.18 R
4008 4511 0.033781 TTAACTTCGGTGGACGTGGG 59.966 55.000 0.00 0.0 44.69 4.61 R
4583 6465 0.108377 TCCGCACGTTCAGCATATGT 60.108 50.000 4.29 0.0 0.00 2.29 R
6528 8593 1.678728 CGCAGACTGGCCTATTGGAAA 60.679 52.381 3.32 0.0 34.57 3.13 R
6712 8777 2.711547 ACATAGCTCCTTTACATCCCCC 59.288 50.000 0.00 0.0 0.00 5.40 R
8398 10652 0.261696 AACTGAGCCCCCAACAAACT 59.738 50.000 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.627467 GCAAACACACTGTCTCCACTATAG 59.373 45.833 0.00 0.00 0.00 1.31
120 123 0.603065 AAACGGCAATTTCCTGCTCC 59.397 50.000 0.00 0.00 42.25 4.70
161 174 1.257750 CCCATCTCACGGACTCCACA 61.258 60.000 0.00 0.00 0.00 4.17
162 175 0.174389 CCATCTCACGGACTCCACAG 59.826 60.000 0.00 0.00 0.00 3.66
163 176 0.891373 CATCTCACGGACTCCACAGT 59.109 55.000 0.00 0.00 34.57 3.55
164 177 2.092323 CATCTCACGGACTCCACAGTA 58.908 52.381 0.00 0.00 30.63 2.74
165 178 1.531423 TCTCACGGACTCCACAGTAC 58.469 55.000 0.00 0.00 30.63 2.73
166 179 1.073444 TCTCACGGACTCCACAGTACT 59.927 52.381 0.00 0.00 29.89 2.73
167 180 1.469308 CTCACGGACTCCACAGTACTC 59.531 57.143 0.00 0.00 29.89 2.59
168 181 0.526662 CACGGACTCCACAGTACTCC 59.473 60.000 0.00 0.00 29.89 3.85
169 182 0.111832 ACGGACTCCACAGTACTCCA 59.888 55.000 0.00 0.00 29.89 3.86
170 183 0.526662 CGGACTCCACAGTACTCCAC 59.473 60.000 0.00 0.00 29.89 4.02
171 184 1.887088 CGGACTCCACAGTACTCCACT 60.887 57.143 0.00 0.00 38.32 4.00
172 185 2.617276 CGGACTCCACAGTACTCCACTA 60.617 54.545 0.00 0.00 34.98 2.74
173 186 2.754002 GGACTCCACAGTACTCCACTAC 59.246 54.545 0.00 0.00 34.98 2.73
445 461 4.250305 GGCACCCACCACGTCACT 62.250 66.667 0.00 0.00 0.00 3.41
1422 1469 3.056328 GTTCCCTTGTGAGCGCCC 61.056 66.667 2.29 0.00 0.00 6.13
1519 1567 3.228453 GTTGTATCGAGGGTATGGAGGA 58.772 50.000 0.00 0.00 0.00 3.71
1528 1576 0.753262 GGTATGGAGGAGCACGACAT 59.247 55.000 0.00 0.00 0.00 3.06
1715 1763 9.546428 GGATGCTTTTTAACTGCCATTTATTAT 57.454 29.630 0.00 0.00 0.00 1.28
1851 2028 0.750182 AGTCACCAAAACCACGTGGG 60.750 55.000 36.47 21.37 39.39 4.61
2083 2260 5.728637 ATGTTTGAAATTCCCTCCAGAAC 57.271 39.130 0.00 0.00 0.00 3.01
2273 2450 5.881923 AAAAGCTGGATGATAATGGCATT 57.118 34.783 18.01 18.01 0.00 3.56
2315 2492 7.548427 ACAAATAACATCAGTGATGAGACAGAG 59.452 37.037 34.38 20.60 42.09 3.35
2336 2513 6.214191 GAGTATCTGATCTTCTGGTGTGAA 57.786 41.667 0.00 0.00 0.00 3.18
2337 2514 5.971763 AGTATCTGATCTTCTGGTGTGAAC 58.028 41.667 0.00 0.00 0.00 3.18
2473 2650 6.240894 TCTTGAGTTGGATCACTTATGCTTT 58.759 36.000 0.00 0.00 0.00 3.51
3054 3235 8.786826 TTTGATGTCCACGTCTCTTATTAAAT 57.213 30.769 0.77 0.00 33.19 1.40
3055 3236 9.878667 TTTGATGTCCACGTCTCTTATTAAATA 57.121 29.630 0.77 0.00 33.19 1.40
3056 3237 8.867112 TGATGTCCACGTCTCTTATTAAATAC 57.133 34.615 0.77 0.00 33.19 1.89
3057 3238 8.692710 TGATGTCCACGTCTCTTATTAAATACT 58.307 33.333 0.77 0.00 33.19 2.12
3058 3239 9.182933 GATGTCCACGTCTCTTATTAAATACTC 57.817 37.037 0.00 0.00 0.00 2.59
3059 3240 7.486647 TGTCCACGTCTCTTATTAAATACTCC 58.513 38.462 0.00 0.00 0.00 3.85
3060 3241 6.922407 GTCCACGTCTCTTATTAAATACTCCC 59.078 42.308 0.00 0.00 0.00 4.30
3061 3242 6.837568 TCCACGTCTCTTATTAAATACTCCCT 59.162 38.462 0.00 0.00 0.00 4.20
3062 3243 7.014038 TCCACGTCTCTTATTAAATACTCCCTC 59.986 40.741 0.00 0.00 0.00 4.30
3063 3244 7.014422 CCACGTCTCTTATTAAATACTCCCTCT 59.986 40.741 0.00 0.00 0.00 3.69
3064 3245 7.863375 CACGTCTCTTATTAAATACTCCCTCTG 59.137 40.741 0.00 0.00 0.00 3.35
3065 3246 7.560626 ACGTCTCTTATTAAATACTCCCTCTGT 59.439 37.037 0.00 0.00 0.00 3.41
3066 3247 9.064706 CGTCTCTTATTAAATACTCCCTCTGTA 57.935 37.037 0.00 0.00 0.00 2.74
3081 3262 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3082 3263 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3083 3264 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3084 3265 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3085 3266 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3101 3282 7.701809 AGAGCGTTTAGATCACTAAAATAGC 57.298 36.000 0.00 0.00 45.97 2.97
3102 3283 6.418226 AGAGCGTTTAGATCACTAAAATAGCG 59.582 38.462 0.00 0.00 45.97 4.26
3103 3284 6.270815 AGCGTTTAGATCACTAAAATAGCGA 58.729 36.000 0.00 0.00 45.97 4.93
3104 3285 6.924060 AGCGTTTAGATCACTAAAATAGCGAT 59.076 34.615 0.00 0.00 45.97 4.58
3105 3286 7.115095 AGCGTTTAGATCACTAAAATAGCGATC 59.885 37.037 7.12 7.12 45.97 3.69
3107 3288 9.608617 CGTTTAGATCACTAAAATAGCGATCTA 57.391 33.333 15.86 15.86 46.98 1.98
3111 3292 8.508800 AGATCACTAAAATAGCGATCTAAACG 57.491 34.615 13.51 0.00 46.98 3.60
3112 3293 7.115095 AGATCACTAAAATAGCGATCTAAACGC 59.885 37.037 13.51 0.00 46.98 4.84
3130 3311 8.715998 TCTAAACGCTCTTATATTAGTCTACGG 58.284 37.037 0.00 0.00 0.00 4.02
3131 3312 7.502120 AAACGCTCTTATATTAGTCTACGGA 57.498 36.000 0.00 0.00 0.00 4.69
3132 3313 6.724694 ACGCTCTTATATTAGTCTACGGAG 57.275 41.667 0.00 0.00 0.00 4.63
3133 3314 5.642919 ACGCTCTTATATTAGTCTACGGAGG 59.357 44.000 0.00 0.00 0.00 4.30
3134 3315 5.064962 CGCTCTTATATTAGTCTACGGAGGG 59.935 48.000 0.00 0.00 0.00 4.30
3135 3316 6.179040 GCTCTTATATTAGTCTACGGAGGGA 58.821 44.000 0.00 0.00 0.00 4.20
3136 3317 6.316890 GCTCTTATATTAGTCTACGGAGGGAG 59.683 46.154 0.00 0.00 0.00 4.30
3290 3487 6.533730 TGGAAGTTACACATGTTCTCTGAAT 58.466 36.000 0.00 0.00 0.00 2.57
3703 3901 2.926778 AGAGGAATAGAGTGGCATGC 57.073 50.000 9.90 9.90 0.00 4.06
3742 4237 8.523915 ACAGGATTTGTATGAGCATTTGATTA 57.476 30.769 0.00 0.00 38.56 1.75
3763 4258 4.939509 ATGCGCAAGAAAAACGTAGTAT 57.060 36.364 17.11 0.00 40.17 2.12
3768 4263 7.130917 TGCGCAAGAAAAACGTAGTATTTTTA 58.869 30.769 8.16 0.00 40.17 1.52
3769 4264 7.804129 TGCGCAAGAAAAACGTAGTATTTTTAT 59.196 29.630 8.16 0.00 40.17 1.40
3770 4265 8.302057 GCGCAAGAAAAACGTAGTATTTTTATC 58.698 33.333 0.30 0.00 40.17 1.75
3772 4267 9.836076 GCAAGAAAAACGTAGTATTTTTATCCT 57.164 29.630 0.00 0.00 45.00 3.24
3781 4276 9.978044 ACGTAGTATTTTTATCCTCAATCCTAC 57.022 33.333 0.00 0.00 41.94 3.18
3786 4286 9.014297 GTATTTTTATCCTCAATCCTACATGGG 57.986 37.037 0.00 0.00 36.20 4.00
3824 4324 9.099454 GAAAACTAGTACAAGTGAATCCTATGG 57.901 37.037 0.00 0.00 0.00 2.74
3987 4490 4.219115 TCCACCCACATTGTTACAACATT 58.781 39.130 0.00 0.00 38.95 2.71
4002 4505 7.870954 TGTTACAACATTTTTACAAACCACACA 59.129 29.630 0.00 0.00 33.17 3.72
4008 4511 0.739561 TTACAAACCACACAACCGGC 59.260 50.000 0.00 0.00 0.00 6.13
4148 4651 2.082231 GTCGACAGCAGTGACTACCTA 58.918 52.381 11.55 0.00 0.00 3.08
4152 4662 3.251245 CGACAGCAGTGACTACCTATAGG 59.749 52.174 17.73 17.73 42.17 2.57
4172 4682 1.051556 TGCGATGGTGTAGCCCCATA 61.052 55.000 0.00 0.00 42.76 2.74
4259 4769 2.438975 CACATGATGCCCAGCCGT 60.439 61.111 0.00 0.00 0.00 5.68
4290 6172 1.292223 GCACCACTCACCGAGCTTA 59.708 57.895 0.00 0.00 32.04 3.09
4323 6205 4.115199 GCCCAATCCGGTCTGCCT 62.115 66.667 0.00 0.00 0.00 4.75
4326 6208 1.338136 CCCAATCCGGTCTGCCTAGT 61.338 60.000 0.00 0.00 0.00 2.57
4364 6246 2.288395 CCCACACATCTCTGGCAAAAAC 60.288 50.000 0.00 0.00 0.00 2.43
4483 6365 1.349688 TCCAACACCTATTCCGCAACT 59.650 47.619 0.00 0.00 0.00 3.16
4549 6431 0.670546 CCGTCCACGTGAAATCAGCT 60.671 55.000 19.30 0.00 37.74 4.24
4583 6465 4.344865 GGCCCCAGAACTTCGCCA 62.345 66.667 0.00 0.00 39.50 5.69
4585 6467 2.429930 CCCCAGAACTTCGCCACA 59.570 61.111 0.00 0.00 0.00 4.17
4603 6489 1.006086 CATATGCTGAACGTGCGGAA 58.994 50.000 6.53 0.00 0.00 4.30
4621 6507 2.417719 GAAAACTCGCCATCACACTCT 58.582 47.619 0.00 0.00 0.00 3.24
4674 6560 2.366916 GGTCTAGCTGCACAGTATCCAT 59.633 50.000 1.02 0.00 0.00 3.41
4678 6564 0.465097 GCTGCACAGTATCCATGGCT 60.465 55.000 6.96 0.00 0.00 4.75
4787 6677 1.069204 GAACTGTGTGTGCTCTCCTGA 59.931 52.381 0.00 0.00 0.00 3.86
4816 6706 0.040646 ACACCCGGTCATACAGGAGA 59.959 55.000 0.00 0.00 35.32 3.71
4895 6949 9.640963 GGCCACTAGTACATATGTTATTTCTAG 57.359 37.037 14.77 17.47 0.00 2.43
4980 7034 9.114952 CTGACAAAGTGTAGATCTAGTATCTCA 57.885 37.037 1.64 0.00 0.00 3.27
5022 7076 4.156455 ACAGTTGTTTCACCACTGAGAT 57.844 40.909 13.48 0.00 33.15 2.75
5199 7254 7.250569 ACTATCATTAAATGTTTTGCTGTCCG 58.749 34.615 0.00 0.00 0.00 4.79
5861 7917 6.823689 ACCTACTAATTGGCTTACATTGTCAG 59.176 38.462 0.00 0.00 0.00 3.51
5870 7926 3.941483 GCTTACATTGTCAGTACATGGCT 59.059 43.478 0.00 0.00 34.97 4.75
5880 7936 4.072131 TCAGTACATGGCTGGAAAAGTTC 58.928 43.478 16.19 0.00 34.89 3.01
6175 8236 1.303888 CAGCCATGCCCTGTCAAGT 60.304 57.895 4.05 0.00 0.00 3.16
6193 8257 6.545666 TGTCAAGTGCTCCATTTTTAGAGAAA 59.454 34.615 0.00 0.00 31.43 2.52
6324 8388 9.696917 CAGGCTTTAATAACTGTGAAGAAAAAT 57.303 29.630 0.00 0.00 0.00 1.82
6509 8574 5.518847 TCAGGTTATTTATCAGAAGAACGCG 59.481 40.000 3.53 3.53 32.90 6.01
6518 8583 1.153549 GAAGAACGCGATGGCCTCT 60.154 57.895 15.93 1.26 35.02 3.69
6528 8593 1.202734 CGATGGCCTCTGATGGTTCAT 60.203 52.381 3.32 0.00 0.00 2.57
6642 8707 5.959618 ATTTTTGTTTTCCTCGAGTAGGG 57.040 39.130 12.31 0.00 46.55 3.53
6712 8777 5.637810 TCTTTTAGCGGATATTATTCAGCCG 59.362 40.000 0.00 0.00 44.47 5.52
6789 8854 5.832539 AAGGCATATACTGGTATTGCTCT 57.167 39.130 17.91 13.63 33.84 4.09
6985 9050 2.027385 GTTGAGCCCTGGATTTGGATC 58.973 52.381 0.00 0.00 37.56 3.36
7034 9099 4.005650 ACACCATATGTATATGCAGCTGC 58.994 43.478 31.89 31.89 40.88 5.25
7037 9102 3.376234 CCATATGTATATGCAGCTGCCAC 59.624 47.826 34.64 24.94 38.99 5.01
7060 9125 4.267214 CGTACTTGATTCAGTGCATCTCAG 59.733 45.833 4.38 3.31 30.23 3.35
7063 9128 3.345508 TGATTCAGTGCATCTCAGCTT 57.654 42.857 4.38 0.00 34.99 3.74
7126 9191 2.704572 CAGGATCACTGTCTTGTTCCC 58.295 52.381 0.00 0.00 42.42 3.97
7173 9238 0.320771 ACTTGTGAGTGATGGTCGCC 60.321 55.000 0.00 0.00 33.99 5.54
7568 9635 2.443255 ACCAATGTCTCCTGGAACACTT 59.557 45.455 11.97 2.16 36.49 3.16
7628 9695 2.585330 TCTCAAAATGCTGTTGCTCCA 58.415 42.857 0.00 0.00 40.48 3.86
7629 9696 3.159472 TCTCAAAATGCTGTTGCTCCAT 58.841 40.909 0.00 0.00 40.48 3.41
7705 9772 0.165944 GTGTTGACAGAATTCCGCGG 59.834 55.000 22.12 22.12 0.00 6.46
7966 10033 2.363306 ACATCTTGTTGCTGGGAACA 57.637 45.000 3.65 3.65 39.59 3.18
8197 10265 1.267121 AGAGTCGCCTTTAGCCTCAA 58.733 50.000 0.00 0.00 38.78 3.02
8306 10377 4.537015 GATGAAACTGTGCCTTGTAACAC 58.463 43.478 0.00 0.00 37.31 3.32
8401 10655 3.698250 TTGCGCCACAAGTCTAGTT 57.302 47.368 4.18 0.00 33.24 2.24
8403 10657 1.225855 TGCGCCACAAGTCTAGTTTG 58.774 50.000 4.18 7.79 0.00 2.93
8405 10659 1.602377 GCGCCACAAGTCTAGTTTGTT 59.398 47.619 0.00 0.00 36.67 2.83
8406 10660 2.602217 GCGCCACAAGTCTAGTTTGTTG 60.602 50.000 0.00 9.72 36.67 3.33
8407 10661 2.032030 CGCCACAAGTCTAGTTTGTTGG 60.032 50.000 11.09 14.51 36.67 3.77
8411 10667 1.886542 CAAGTCTAGTTTGTTGGGGGC 59.113 52.381 0.00 0.00 0.00 5.80
8415 10671 1.351017 TCTAGTTTGTTGGGGGCTCAG 59.649 52.381 0.00 0.00 0.00 3.35
8429 10685 3.010420 GGGCTCAGTTATTTTCTCGCTT 58.990 45.455 0.00 0.00 0.00 4.68
8448 10704 3.628017 CTTTTCTGCGAAATTCCAACGT 58.372 40.909 4.91 0.00 0.00 3.99
8458 11017 4.385447 CGAAATTCCAACGTCAAAATGCAT 59.615 37.500 0.00 0.00 0.00 3.96
8470 11029 0.252375 AAATGCATGAGCCAGGGGTT 60.252 50.000 0.00 0.00 41.13 4.11
8483 11042 2.107552 CCAGGGGTTTCTGACTTTACCA 59.892 50.000 0.00 0.00 36.93 3.25
8488 11047 4.830600 GGGGTTTCTGACTTTACCATTCAA 59.169 41.667 0.00 0.00 32.20 2.69
8698 11257 2.829720 TGTCGTAGGCAGGATGTACTTT 59.170 45.455 0.00 0.00 36.97 2.66
8780 11339 3.923017 AACTTTTCCCTGCGAAGAATG 57.077 42.857 0.00 0.00 0.00 2.67
8784 11343 4.082571 ACTTTTCCCTGCGAAGAATGAATG 60.083 41.667 0.00 0.00 0.00 2.67
8851 11441 6.986231 TGTAGTAATGGTGCATAGAATCACAG 59.014 38.462 0.00 0.00 35.04 3.66
8862 11452 7.646526 GTGCATAGAATCACAGTTACACGTATA 59.353 37.037 0.00 0.00 33.63 1.47
8870 11460 4.561606 CACAGTTACACGTATACCAAGCTC 59.438 45.833 0.00 0.00 0.00 4.09
8874 11464 5.184479 AGTTACACGTATACCAAGCTCTTCA 59.816 40.000 0.00 0.00 0.00 3.02
8907 11497 1.539388 TGCCATCCTGTGCGTTAAAAG 59.461 47.619 0.00 0.00 0.00 2.27
8938 11528 0.520404 GCAGATGTGACACAAGCCAG 59.480 55.000 13.23 3.54 0.00 4.85
8959 11549 4.795795 CAGAATGAGAGTGTTACGCTAGTG 59.204 45.833 0.59 0.59 39.69 2.74
8985 11575 7.147976 GTGGAAATACAGCATGAAACTTTCTT 58.852 34.615 0.00 0.00 39.69 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.418628 TCCTCGCCGTGATGAATTTTTC 59.581 45.455 0.00 0.00 0.00 2.29
103 106 2.040544 CGGAGCAGGAAATTGCCGT 61.041 57.895 0.00 0.00 45.18 5.68
120 123 0.368907 CCGTATTTGGTTCGTGCTCG 59.631 55.000 0.81 0.81 38.55 5.03
161 174 6.400096 ACTAGGGTTTAGTAGTGGAGTACT 57.600 41.667 0.00 0.00 43.56 2.73
162 175 7.995488 TCATACTAGGGTTTAGTAGTGGAGTAC 59.005 40.741 0.00 0.00 34.01 2.73
163 176 8.106017 TCATACTAGGGTTTAGTAGTGGAGTA 57.894 38.462 0.00 0.00 34.01 2.59
164 177 6.978261 TCATACTAGGGTTTAGTAGTGGAGT 58.022 40.000 0.00 0.00 34.01 3.85
165 178 7.893124 TTCATACTAGGGTTTAGTAGTGGAG 57.107 40.000 0.00 0.00 34.01 3.86
166 179 7.289317 CCATTCATACTAGGGTTTAGTAGTGGA 59.711 40.741 0.00 2.82 34.01 4.02
167 180 7.289317 TCCATTCATACTAGGGTTTAGTAGTGG 59.711 40.741 0.00 6.11 34.01 4.00
168 181 8.246430 TCCATTCATACTAGGGTTTAGTAGTG 57.754 38.462 0.00 1.13 34.01 2.74
169 182 8.702819 GTTCCATTCATACTAGGGTTTAGTAGT 58.297 37.037 0.00 0.00 34.01 2.73
170 183 8.925338 AGTTCCATTCATACTAGGGTTTAGTAG 58.075 37.037 0.00 0.00 34.01 2.57
171 184 8.849543 AGTTCCATTCATACTAGGGTTTAGTA 57.150 34.615 0.00 0.00 34.88 1.82
172 185 7.750947 AGTTCCATTCATACTAGGGTTTAGT 57.249 36.000 0.00 0.00 0.00 2.24
173 186 9.110502 GAAAGTTCCATTCATACTAGGGTTTAG 57.889 37.037 0.00 0.00 0.00 1.85
297 310 2.840038 TGGTCTGGCTCTATGACACATT 59.160 45.455 0.00 0.00 32.84 2.71
438 454 2.029073 CAGTGGGCGAAGTGACGT 59.971 61.111 0.00 0.00 35.59 4.34
439 455 2.022129 GTCAGTGGGCGAAGTGACG 61.022 63.158 10.01 0.00 39.89 4.35
440 456 0.946221 CAGTCAGTGGGCGAAGTGAC 60.946 60.000 15.33 15.33 46.54 3.67
441 457 1.367471 CAGTCAGTGGGCGAAGTGA 59.633 57.895 0.00 0.00 0.00 3.41
442 458 2.320587 GCAGTCAGTGGGCGAAGTG 61.321 63.158 0.00 0.00 0.00 3.16
443 459 2.031163 GCAGTCAGTGGGCGAAGT 59.969 61.111 0.00 0.00 0.00 3.01
444 460 2.743928 GGCAGTCAGTGGGCGAAG 60.744 66.667 0.00 0.00 0.00 3.79
445 461 4.329545 GGGCAGTCAGTGGGCGAA 62.330 66.667 0.00 0.00 0.00 4.70
568 586 0.470766 TAGGCGTGAGGTTGTTGGTT 59.529 50.000 0.00 0.00 0.00 3.67
569 587 0.690762 ATAGGCGTGAGGTTGTTGGT 59.309 50.000 0.00 0.00 0.00 3.67
1422 1469 7.625828 AGACGTAATAAATCTTGAAAAGGGG 57.374 36.000 0.00 0.00 46.24 4.79
1528 1576 4.285254 CGAATTCATCGTAGCCAAGAGCA 61.285 47.826 6.22 0.00 46.52 4.26
1851 2028 0.947244 CTTTCCCATCATACAGCCGC 59.053 55.000 0.00 0.00 0.00 6.53
1978 2155 4.216902 TGTCTTCATTGGCAAGAATCACAG 59.783 41.667 5.96 0.00 31.60 3.66
2083 2260 5.057149 CCAACTCTATCCATAAAAGGGTCG 58.943 45.833 0.00 0.00 0.00 4.79
2273 2450 7.261325 TGTTATTTGTCAAGCTTAGCAACAAA 58.739 30.769 23.88 23.88 39.73 2.83
2315 2492 5.724328 TGTTCACACCAGAAGATCAGATAC 58.276 41.667 0.00 0.00 0.00 2.24
2327 2504 3.866883 ACAAAACCTTGTTCACACCAG 57.133 42.857 0.00 0.00 43.45 4.00
2336 2513 9.623000 AGTTGACTACTTAATACAAAACCTTGT 57.377 29.630 0.00 0.00 40.71 3.16
2473 2650 1.072266 AAATGACACAGCCACCCCTA 58.928 50.000 0.00 0.00 0.00 3.53
2730 2910 6.743575 AAGTAGTGAACCATCAAAGCATAC 57.256 37.500 0.00 0.00 37.30 2.39
3055 3236 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3056 3237 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3057 3238 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3058 3239 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3059 3240 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3075 3256 9.245962 GCTATTTTAGTGATCTAAACGCTCTTA 57.754 33.333 0.00 0.00 43.20 2.10
3076 3257 7.043325 CGCTATTTTAGTGATCTAAACGCTCTT 60.043 37.037 0.00 0.00 43.20 2.85
3077 3258 6.418226 CGCTATTTTAGTGATCTAAACGCTCT 59.582 38.462 0.00 0.00 43.20 4.09
3078 3259 6.417044 TCGCTATTTTAGTGATCTAAACGCTC 59.583 38.462 0.00 0.00 43.20 5.03
3079 3260 6.270815 TCGCTATTTTAGTGATCTAAACGCT 58.729 36.000 0.00 0.00 43.20 5.07
3080 3261 6.506464 TCGCTATTTTAGTGATCTAAACGC 57.494 37.500 0.00 3.98 43.20 4.84
3104 3285 8.715998 CCGTAGACTAATATAAGAGCGTTTAGA 58.284 37.037 0.00 0.00 0.00 2.10
3105 3286 8.715998 TCCGTAGACTAATATAAGAGCGTTTAG 58.284 37.037 0.00 0.00 0.00 1.85
3106 3287 8.607441 TCCGTAGACTAATATAAGAGCGTTTA 57.393 34.615 0.00 0.00 0.00 2.01
3107 3288 7.308469 CCTCCGTAGACTAATATAAGAGCGTTT 60.308 40.741 0.00 0.00 0.00 3.60
3108 3289 6.149142 CCTCCGTAGACTAATATAAGAGCGTT 59.851 42.308 0.00 0.00 0.00 4.84
3109 3290 5.642919 CCTCCGTAGACTAATATAAGAGCGT 59.357 44.000 0.00 0.00 0.00 5.07
3110 3291 5.064962 CCCTCCGTAGACTAATATAAGAGCG 59.935 48.000 0.00 0.00 0.00 5.03
3111 3292 6.179040 TCCCTCCGTAGACTAATATAAGAGC 58.821 44.000 0.00 0.00 0.00 4.09
3112 3293 7.396418 ACTCCCTCCGTAGACTAATATAAGAG 58.604 42.308 0.00 0.00 0.00 2.85
3113 3294 7.327064 ACTCCCTCCGTAGACTAATATAAGA 57.673 40.000 0.00 0.00 0.00 2.10
3114 3295 8.320617 AGTACTCCCTCCGTAGACTAATATAAG 58.679 40.741 0.00 0.00 0.00 1.73
3115 3296 8.212259 AGTACTCCCTCCGTAGACTAATATAA 57.788 38.462 0.00 0.00 0.00 0.98
3116 3297 7.805083 AGTACTCCCTCCGTAGACTAATATA 57.195 40.000 0.00 0.00 0.00 0.86
3117 3298 6.700845 AGTACTCCCTCCGTAGACTAATAT 57.299 41.667 0.00 0.00 0.00 1.28
3118 3299 7.618019 TTAGTACTCCCTCCGTAGACTAATA 57.382 40.000 0.00 0.00 0.00 0.98
3119 3300 6.506538 TTAGTACTCCCTCCGTAGACTAAT 57.493 41.667 0.00 0.00 0.00 1.73
3120 3301 5.957771 TTAGTACTCCCTCCGTAGACTAA 57.042 43.478 0.00 0.00 0.00 2.24
3121 3302 5.957771 TTTAGTACTCCCTCCGTAGACTA 57.042 43.478 0.00 0.00 0.00 2.59
3122 3303 4.851639 TTTAGTACTCCCTCCGTAGACT 57.148 45.455 0.00 0.00 0.00 3.24
3123 3304 6.295249 ACTATTTAGTACTCCCTCCGTAGAC 58.705 44.000 0.00 0.00 34.13 2.59
3124 3305 6.506538 ACTATTTAGTACTCCCTCCGTAGA 57.493 41.667 0.00 0.00 34.13 2.59
3125 3306 7.936301 ACTAACTATTTAGTACTCCCTCCGTAG 59.064 40.741 0.00 0.00 45.17 3.51
3126 3307 7.806180 ACTAACTATTTAGTACTCCCTCCGTA 58.194 38.462 0.00 0.00 45.17 4.02
3127 3308 6.667661 ACTAACTATTTAGTACTCCCTCCGT 58.332 40.000 0.00 0.00 45.17 4.69
3128 3309 7.579761 AACTAACTATTTAGTACTCCCTCCG 57.420 40.000 0.00 0.00 46.10 4.63
3176 3358 7.545362 ACAAGTCATTGATATGTAGAAGCAC 57.455 36.000 5.73 0.00 38.83 4.40
3212 3395 6.758886 GGTGTTGTATCAGTTTAGATGAGAGG 59.241 42.308 0.00 0.00 0.00 3.69
3213 3396 6.758886 GGGTGTTGTATCAGTTTAGATGAGAG 59.241 42.308 0.00 0.00 0.00 3.20
3618 3815 7.625280 AGAGGCCCTAATATATGATACACACAT 59.375 37.037 0.00 0.00 0.00 3.21
3623 3820 8.679344 TCAAAGAGGCCCTAATATATGATACA 57.321 34.615 0.00 0.00 0.00 2.29
3651 3848 2.327568 CTGCATTTTACAAACCCTGCG 58.672 47.619 0.00 0.00 32.42 5.18
3734 3932 5.633182 ACGTTTTTCTTGCGCATAATCAAAT 59.367 32.000 12.75 0.00 0.00 2.32
3742 4237 4.939509 ATACTACGTTTTTCTTGCGCAT 57.060 36.364 12.75 0.00 0.00 4.73
3763 4258 7.219601 TCCCATGTAGGATTGAGGATAAAAA 57.780 36.000 0.00 0.00 41.22 1.94
3768 4263 5.937492 AATTCCCATGTAGGATTGAGGAT 57.063 39.130 0.00 0.00 41.22 3.24
3769 4264 5.732331 AAATTCCCATGTAGGATTGAGGA 57.268 39.130 0.00 0.00 41.22 3.71
3770 4265 5.302823 GGAAAATTCCCATGTAGGATTGAGG 59.697 44.000 0.43 0.00 41.62 3.86
3987 4490 2.416972 GCCGGTTGTGTGGTTTGTAAAA 60.417 45.455 1.90 0.00 0.00 1.52
4008 4511 0.033781 TTAACTTCGGTGGACGTGGG 59.966 55.000 0.00 0.00 44.69 4.61
4148 4651 0.393077 GGCTACACCATCGCACCTAT 59.607 55.000 0.00 0.00 38.86 2.57
4152 4662 2.513897 GGGGCTACACCATCGCAC 60.514 66.667 0.00 0.00 42.05 5.34
4259 4769 0.826715 GTGGTGCATCTCTAGGCTCA 59.173 55.000 0.00 0.00 32.35 4.26
4290 6172 2.419198 GCGCCATCAGTCGAGGAT 59.581 61.111 0.00 0.00 0.00 3.24
4323 6205 1.964223 GCTACTATCTGCCAGGCACTA 59.036 52.381 11.22 1.34 36.02 2.74
4364 6246 1.226802 CACATCCTCCTCGACTGCG 60.227 63.158 0.00 0.00 39.35 5.18
4472 6354 2.083774 CTTGGCTTGAGTTGCGGAATA 58.916 47.619 0.00 0.00 0.00 1.75
4483 6365 1.134220 ACGTTTCCTCACTTGGCTTGA 60.134 47.619 0.00 0.00 0.00 3.02
4583 6465 0.108377 TCCGCACGTTCAGCATATGT 60.108 50.000 4.29 0.00 0.00 2.29
4585 6467 1.732941 TTTCCGCACGTTCAGCATAT 58.267 45.000 0.00 0.00 0.00 1.78
4603 6489 1.344438 TGAGAGTGTGATGGCGAGTTT 59.656 47.619 0.00 0.00 0.00 2.66
4621 6507 0.916086 ACAAGGTGGTGTGGTCTTGA 59.084 50.000 8.62 0.00 38.96 3.02
4678 6564 4.736126 TCAATTCTTCGAGCTATGGACA 57.264 40.909 0.00 0.00 0.00 4.02
4787 6677 4.082523 CCGGGTGTCGAGGCACAT 62.083 66.667 10.14 0.00 42.43 3.21
4895 6949 7.486232 GTCGTGGTTTACAGGTCTAGTAATAAC 59.514 40.741 0.00 0.00 36.39 1.89
5022 7076 0.250901 GAAGGAAACTGGCAGCTCCA 60.251 55.000 28.44 5.03 42.68 3.86
5199 7254 1.523758 AATGAAGACGTCCCTTGTGC 58.476 50.000 13.01 0.00 0.00 4.57
5204 7259 8.047310 AGAAAATACAATAATGAAGACGTCCCT 58.953 33.333 13.01 0.00 0.00 4.20
5861 7917 5.391312 AATGAACTTTTCCAGCCATGTAC 57.609 39.130 0.00 0.00 0.00 2.90
5880 7936 7.592938 TGCTTGGGATATTAATAGCGAAAATG 58.407 34.615 4.73 0.00 0.00 2.32
5893 7949 3.117776 TGCATCACTCTGCTTGGGATATT 60.118 43.478 0.00 0.00 42.75 1.28
5895 7951 1.839354 TGCATCACTCTGCTTGGGATA 59.161 47.619 0.00 0.00 42.75 2.59
6175 8236 6.496565 TCCCAAATTTCTCTAAAAATGGAGCA 59.503 34.615 0.00 0.00 36.90 4.26
6193 8257 8.664669 ACAAATTACTTAATCACCTCCCAAAT 57.335 30.769 0.00 0.00 0.00 2.32
6394 8459 4.893524 TGACTGTCTCTTTGGTTAGTCAGA 59.106 41.667 9.51 0.00 39.46 3.27
6509 8574 2.653234 ATGAACCATCAGAGGCCATC 57.347 50.000 5.01 0.00 39.39 3.51
6518 8583 3.960102 GGCCTATTGGAAATGAACCATCA 59.040 43.478 0.00 0.00 37.26 3.07
6528 8593 1.678728 CGCAGACTGGCCTATTGGAAA 60.679 52.381 3.32 0.00 34.57 3.13
6642 8707 7.489113 CCAATCAATACAAAACAGATAGGTTGC 59.511 37.037 0.00 0.00 0.00 4.17
6712 8777 2.711547 ACATAGCTCCTTTACATCCCCC 59.288 50.000 0.00 0.00 0.00 5.40
6789 8854 3.949113 GGGGAAACTAAATACGATGCCAA 59.051 43.478 0.00 0.00 0.00 4.52
6985 9050 6.313905 CCAAGAAGTTGCATAACACTAGTAGG 59.686 42.308 1.45 0.00 39.30 3.18
6988 9053 5.865085 TCCAAGAAGTTGCATAACACTAGT 58.135 37.500 0.00 0.00 39.30 2.57
7034 9099 2.412870 TGCACTGAATCAAGTACGTGG 58.587 47.619 8.98 0.00 0.00 4.94
7037 9102 4.176271 TGAGATGCACTGAATCAAGTACG 58.824 43.478 0.00 0.00 0.00 3.67
7126 9191 4.503007 CCCATGTACTGTAAGATTTCGACG 59.497 45.833 0.00 0.00 37.43 5.12
7173 9238 3.614092 AGAAGTGCCAGGTGTCATTATG 58.386 45.455 0.00 0.00 0.00 1.90
7568 9635 2.216898 TGTTCATCACACATCAACGCA 58.783 42.857 0.00 0.00 0.00 5.24
7628 9695 5.718724 TCTGATCGACATCTATTGCTGAT 57.281 39.130 0.00 0.00 0.00 2.90
7629 9696 5.284864 GTTCTGATCGACATCTATTGCTGA 58.715 41.667 0.00 0.00 0.00 4.26
7705 9772 0.385974 CACAAGCTTACGCAGGCAAC 60.386 55.000 0.00 0.00 39.10 4.17
7966 10033 2.301870 TGTCTAAATGCCCACTCGAAGT 59.698 45.455 0.00 0.00 0.00 3.01
8197 10265 7.287810 AGAAGGAACTAAAATGGTACACAACT 58.712 34.615 0.00 0.00 39.59 3.16
8282 10353 2.664402 ACAAGGCACAGTTTCATCCT 57.336 45.000 0.00 0.00 0.00 3.24
8306 10377 3.012934 ACGGGGAAAGGAAACATATGG 57.987 47.619 7.80 0.00 0.00 2.74
8358 10612 4.012374 GTTGCAAGATCCCAGATGAGAAA 58.988 43.478 0.00 0.00 0.00 2.52
8386 10640 2.032030 CCAACAAACTAGACTTGTGGCG 60.032 50.000 13.33 7.38 37.10 5.69
8395 10649 1.351017 CTGAGCCCCCAACAAACTAGA 59.649 52.381 0.00 0.00 0.00 2.43
8396 10650 1.073923 ACTGAGCCCCCAACAAACTAG 59.926 52.381 0.00 0.00 0.00 2.57
8397 10651 1.145571 ACTGAGCCCCCAACAAACTA 58.854 50.000 0.00 0.00 0.00 2.24
8398 10652 0.261696 AACTGAGCCCCCAACAAACT 59.738 50.000 0.00 0.00 0.00 2.66
8399 10653 1.989706 TAACTGAGCCCCCAACAAAC 58.010 50.000 0.00 0.00 0.00 2.93
8400 10654 2.990740 ATAACTGAGCCCCCAACAAA 57.009 45.000 0.00 0.00 0.00 2.83
8401 10655 2.990740 AATAACTGAGCCCCCAACAA 57.009 45.000 0.00 0.00 0.00 2.83
8403 10657 3.431415 AGAAAATAACTGAGCCCCCAAC 58.569 45.455 0.00 0.00 0.00 3.77
8405 10659 2.355716 CGAGAAAATAACTGAGCCCCCA 60.356 50.000 0.00 0.00 0.00 4.96
8406 10660 2.289565 CGAGAAAATAACTGAGCCCCC 58.710 52.381 0.00 0.00 0.00 5.40
8407 10661 1.671328 GCGAGAAAATAACTGAGCCCC 59.329 52.381 0.00 0.00 0.00 5.80
8411 10667 5.792468 GCAGAAAAGCGAGAAAATAACTGAG 59.208 40.000 0.00 0.00 0.00 3.35
8429 10685 2.614520 TGACGTTGGAATTTCGCAGAAA 59.385 40.909 6.26 6.26 45.90 2.52
8448 10704 1.187974 CCCTGGCTCATGCATTTTGA 58.812 50.000 0.00 0.00 41.91 2.69
8458 11017 0.768221 AGTCAGAAACCCCTGGCTCA 60.768 55.000 0.00 0.00 45.11 4.26
8470 11029 7.502226 AGACAACATTGAATGGTAAAGTCAGAA 59.498 33.333 10.27 0.00 33.60 3.02
8483 11042 6.582295 GCGTAATGTTTGAGACAACATTGAAT 59.418 34.615 17.95 0.00 45.83 2.57
8488 11047 4.754618 TCAGCGTAATGTTTGAGACAACAT 59.245 37.500 0.00 0.00 42.62 2.71
8504 11063 5.502079 TCCCCTCATTAATTTTTCAGCGTA 58.498 37.500 0.00 0.00 0.00 4.42
8505 11064 4.340617 TCCCCTCATTAATTTTTCAGCGT 58.659 39.130 0.00 0.00 0.00 5.07
8508 11067 7.466746 TGTTCTCCCCTCATTAATTTTTCAG 57.533 36.000 0.00 0.00 0.00 3.02
8801 11360 9.155975 CAGCTCAAGATACTATTGTACTTTGTT 57.844 33.333 0.00 0.00 32.16 2.83
8851 11441 5.404946 TGAAGAGCTTGGTATACGTGTAAC 58.595 41.667 0.00 0.00 0.00 2.50
8862 11452 6.547510 ACTTACTTTTGAATGAAGAGCTTGGT 59.452 34.615 0.00 0.00 0.00 3.67
8870 11460 6.071728 AGGATGGCACTTACTTTTGAATGAAG 60.072 38.462 0.00 0.00 0.00 3.02
8874 11464 5.047802 CACAGGATGGCACTTACTTTTGAAT 60.048 40.000 0.00 0.00 43.62 2.57
8907 11497 4.746611 TGTCACATCTGCATCATCGATAAC 59.253 41.667 0.00 0.00 0.00 1.89
8938 11528 4.106197 CCACTAGCGTAACACTCTCATTC 58.894 47.826 0.00 0.00 0.00 2.67
8959 11549 5.391312 AAGTTTCATGCTGTATTTCCACC 57.609 39.130 0.00 0.00 0.00 4.61
8985 11575 7.866898 CACCATGTTGTTCTATGACATTTTCAA 59.133 33.333 0.00 0.00 37.92 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.