Multiple sequence alignment - TraesCS3B01G331600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G331600
chr3B
100.000
3878
0
0
556
4433
536983428
536987305
0.000000e+00
7162.0
1
TraesCS3B01G331600
chr3B
100.000
263
0
0
1
263
536982873
536983135
1.850000e-133
486.0
2
TraesCS3B01G331600
chr3B
93.333
60
3
1
557
615
62308030
62307971
2.200000e-13
87.9
3
TraesCS3B01G331600
chr3B
89.552
67
4
3
557
622
756117537
756117473
1.020000e-11
82.4
4
TraesCS3B01G331600
chr3B
100.000
30
0
0
1533
1562
245509906
245509877
6.190000e-04
56.5
5
TraesCS3B01G331600
chr3D
94.241
1719
80
8
2100
3803
410664709
410666423
0.000000e+00
2608.0
6
TraesCS3B01G331600
chr3D
90.757
1493
84
18
627
2103
410663173
410664627
0.000000e+00
1943.0
7
TraesCS3B01G331600
chr3D
98.596
641
6
1
3796
4433
410666599
410667239
0.000000e+00
1131.0
8
TraesCS3B01G331600
chr3D
84.364
275
28
5
1
263
410662828
410663099
5.690000e-64
255.0
9
TraesCS3B01G331600
chr3D
89.552
67
5
2
557
622
567196609
567196544
2.840000e-12
84.2
10
TraesCS3B01G331600
chr3A
93.302
1269
62
9
2099
3351
540970668
540969407
0.000000e+00
1851.0
11
TraesCS3B01G331600
chr3A
89.226
1253
74
23
662
1902
540972182
540970979
0.000000e+00
1509.0
12
TraesCS3B01G331600
chr3A
94.631
745
28
7
3696
4433
540968731
540967992
0.000000e+00
1144.0
13
TraesCS3B01G331600
chr3A
92.541
362
24
2
3337
3698
540969390
540969032
2.360000e-142
516.0
14
TraesCS3B01G331600
chr3A
96.774
217
7
0
1887
2103
540970962
540970746
3.260000e-96
363.0
15
TraesCS3B01G331600
chr4A
94.444
54
3
0
559
612
155806612
155806665
2.840000e-12
84.2
16
TraesCS3B01G331600
chr1A
96.154
52
0
2
562
612
527083975
527084025
2.840000e-12
84.2
17
TraesCS3B01G331600
chr1A
88.406
69
4
4
557
623
537097602
537097668
3.680000e-11
80.5
18
TraesCS3B01G331600
chrUn
89.552
67
4
3
557
622
320256143
320256079
1.020000e-11
82.4
19
TraesCS3B01G331600
chrUn
89.552
67
4
3
557
622
357700793
357700729
1.020000e-11
82.4
20
TraesCS3B01G331600
chr1D
86.957
69
8
1
557
624
277349070
277349002
4.750000e-10
76.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G331600
chr3B
536982873
536987305
4432
False
3824.00
7162
100.0000
1
4433
2
chr3B.!!$F1
4432
1
TraesCS3B01G331600
chr3D
410662828
410667239
4411
False
1484.25
2608
91.9895
1
4433
4
chr3D.!!$F1
4432
2
TraesCS3B01G331600
chr3A
540967992
540972182
4190
True
1076.60
1851
93.2948
662
4433
5
chr3A.!!$R1
3771
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
777
820
0.399454
ACAGCAGCACTTCTGACCAT
59.601
50.0
4.28
0.0
45.72
3.55
F
1479
1539
0.238817
TTTACGTTGCGGGAACATGC
59.761
50.0
12.89
0.0
33.73
4.06
F
2018
2113
0.103937
CCTCGCCAAAAACCAAAGCA
59.896
50.0
0.00
0.0
0.00
3.91
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1734
1797
1.477700
TGCGGTACTTTATGCGGTACT
59.522
47.619
0.00
0.00
38.52
2.73
R
3208
3413
0.520404
GCAGATGTGACACAAGCCAG
59.480
55.000
13.23
3.54
0.00
4.85
R
3676
3912
0.252375
AAATGCATGAGCCAGGGGTT
60.252
50.000
0.00
0.00
41.13
4.11
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
64
65
5.862924
TCTCACTGTAGCAATTGTTTAGC
57.137
39.130
7.40
0.00
0.00
3.09
134
137
9.190317
GAAGAAAATTTGTATCTATTCACCCCT
57.810
33.333
0.00
0.00
0.00
4.79
146
149
8.940012
ATCTATTCACCCCTTCTATATCCATT
57.060
34.615
0.00
0.00
0.00
3.16
147
150
8.757307
TCTATTCACCCCTTCTATATCCATTT
57.243
34.615
0.00
0.00
0.00
2.32
148
151
8.826765
TCTATTCACCCCTTCTATATCCATTTC
58.173
37.037
0.00
0.00
0.00
2.17
149
152
6.840090
TTCACCCCTTCTATATCCATTTCA
57.160
37.500
0.00
0.00
0.00
2.69
161
164
9.919416
TCTATATCCATTTCAATCCTTTCAACA
57.081
29.630
0.00
0.00
0.00
3.33
168
171
7.485913
CCATTTCAATCCTTTCAACAAGTATCG
59.514
37.037
0.00
0.00
0.00
2.92
170
173
4.941263
TCAATCCTTTCAACAAGTATCGGG
59.059
41.667
0.00
0.00
0.00
5.14
194
197
3.303461
CCTCGTGCTCTATGAGTAGAACG
60.303
52.174
0.00
0.00
40.22
3.95
195
198
3.528532
TCGTGCTCTATGAGTAGAACGA
58.471
45.455
1.52
1.52
42.98
3.85
212
225
8.138712
AGTAGAACGAGCAATTAGATTTCTAGG
58.861
37.037
0.00
0.00
0.00
3.02
234
247
2.697229
GGCCCCTCGTGTAGTAGTATTT
59.303
50.000
0.00
0.00
0.00
1.40
235
248
3.243670
GGCCCCTCGTGTAGTAGTATTTC
60.244
52.174
0.00
0.00
0.00
2.17
579
592
7.701809
GCTAAATAGTGATCTAAACGCTCTT
57.298
36.000
0.00
0.00
0.00
2.85
580
593
8.798748
GCTAAATAGTGATCTAAACGCTCTTA
57.201
34.615
0.00
0.00
0.00
2.10
581
594
9.413048
GCTAAATAGTGATCTAAACGCTCTTAT
57.587
33.333
0.00
0.00
0.00
1.73
596
609
8.608844
AACGCTCTTATATTTCTTTATGGAGG
57.391
34.615
0.00
0.00
0.00
4.30
597
610
7.162082
ACGCTCTTATATTTCTTTATGGAGGG
58.838
38.462
0.00
0.00
35.06
4.30
598
611
7.016268
ACGCTCTTATATTTCTTTATGGAGGGA
59.984
37.037
0.00
0.00
34.22
4.20
599
612
7.547370
CGCTCTTATATTTCTTTATGGAGGGAG
59.453
40.741
0.00
0.00
33.23
4.30
600
613
8.379331
GCTCTTATATTTCTTTATGGAGGGAGT
58.621
37.037
0.00
0.00
0.00
3.85
642
685
9.546428
AAACTTGATCAACCTTCCAAAATTTAG
57.454
29.630
3.38
0.00
0.00
1.85
646
689
3.257127
TCAACCTTCCAAAATTTAGCCGG
59.743
43.478
0.00
0.00
0.00
6.13
648
691
2.176045
CCTTCCAAAATTTAGCCGGGT
58.824
47.619
12.58
12.58
0.00
5.28
692
735
9.880157
TTTAATATGGAGGTAGTACAACAACTC
57.120
33.333
2.06
0.00
0.00
3.01
730
773
4.314121
AGCAGTACAGCTCTTCTTTGAAG
58.686
43.478
6.99
1.23
42.18
3.02
731
774
4.061596
GCAGTACAGCTCTTCTTTGAAGT
58.938
43.478
2.52
0.00
0.00
3.01
774
817
2.064762
CAGTACAGCAGCACTTCTGAC
58.935
52.381
4.28
0.00
45.72
3.51
775
818
1.001406
AGTACAGCAGCACTTCTGACC
59.999
52.381
4.28
0.00
45.72
4.02
776
819
1.047801
TACAGCAGCACTTCTGACCA
58.952
50.000
4.28
0.00
45.72
4.02
777
820
0.399454
ACAGCAGCACTTCTGACCAT
59.601
50.000
4.28
0.00
45.72
3.55
798
841
5.461078
CCATGAAAAGAGCACAGAACAAAAG
59.539
40.000
0.00
0.00
0.00
2.27
854
897
1.755008
GTGGACTAGGGAGCTCGCT
60.755
63.158
32.68
32.68
42.15
4.93
914
964
2.265589
AACAGTAGTTTCCCCGGTTG
57.734
50.000
0.00
0.00
33.11
3.77
937
987
4.873129
CGCACCATCCTCCGGACG
62.873
72.222
0.00
0.00
32.98
4.79
957
1007
2.058595
GCCTCCCAGCTCCTTCGTA
61.059
63.158
0.00
0.00
0.00
3.43
958
1008
2.022240
GCCTCCCAGCTCCTTCGTAG
62.022
65.000
0.00
0.00
0.00
3.51
959
1009
1.439644
CTCCCAGCTCCTTCGTAGC
59.560
63.158
0.00
0.00
40.40
3.58
967
1017
3.835378
GCTCCTTCGTAGCTACCTATC
57.165
52.381
18.16
0.00
37.01
2.08
968
1018
2.488937
GCTCCTTCGTAGCTACCTATCC
59.511
54.545
18.16
0.00
37.01
2.59
969
1019
3.811454
GCTCCTTCGTAGCTACCTATCCT
60.811
52.174
18.16
0.00
37.01
3.24
970
1020
3.752665
TCCTTCGTAGCTACCTATCCTG
58.247
50.000
18.16
2.45
0.00
3.86
971
1021
2.229302
CCTTCGTAGCTACCTATCCTGC
59.771
54.545
18.16
0.00
0.00
4.85
972
1022
1.520494
TCGTAGCTACCTATCCTGCG
58.480
55.000
18.16
3.37
36.30
5.18
978
1028
3.497332
AGCTACCTATCCTGCGACAATA
58.503
45.455
0.00
0.00
0.00
1.90
1168
1222
1.202114
TGCTCCGGATGCAAAATTCAC
59.798
47.619
21.42
0.00
37.51
3.18
1321
1375
0.898789
GTTCGGTGAGTCTCCTCCCA
60.899
60.000
9.48
0.00
36.86
4.37
1325
1379
1.408969
GGTGAGTCTCCTCCCATCTC
58.591
60.000
3.90
0.00
36.86
2.75
1333
1387
4.917040
AGTCTCCTCCCATCTCTCACTATA
59.083
45.833
0.00
0.00
0.00
1.31
1392
1452
6.425577
AAATTTTGATTTCCGCATCAATGG
57.574
33.333
0.00
0.00
41.72
3.16
1431
1491
1.374252
AAGCGTTCGCTGTAGGTGG
60.374
57.895
20.05
0.00
41.76
4.61
1479
1539
0.238817
TTTACGTTGCGGGAACATGC
59.761
50.000
12.89
0.00
33.73
4.06
1502
1562
4.630069
CCGATTCCTTCAAACTAACGACAT
59.370
41.667
0.00
0.00
0.00
3.06
1531
1591
1.794512
CAAAATCCTTTGTTGCCGGG
58.205
50.000
2.18
0.00
37.69
5.73
1577
1637
0.874390
GCCATGCGTGTTCTGAAGAA
59.126
50.000
4.96
0.00
0.00
2.52
1592
1654
7.875041
TGTTCTGAAGAATTTTCCACAAAAACA
59.125
29.630
0.00
0.00
39.59
2.83
1650
1712
3.265737
GGCCAATGGGGTCCTAAATTTTT
59.734
43.478
0.00
0.00
39.65
1.94
1660
1722
7.356839
TGGGGTCCTAAATTTTTATATACCCCT
59.643
37.037
26.92
0.00
46.41
4.79
1702
1764
2.778679
CGAGCTGCGTTTGGCTAC
59.221
61.111
0.00
0.00
44.05
3.58
1733
1796
3.007506
TGTTAAGATCGCTCCTTTGTCCA
59.992
43.478
0.00
0.00
0.00
4.02
1734
1797
2.859165
AAGATCGCTCCTTTGTCCAA
57.141
45.000
0.00
0.00
0.00
3.53
1735
1798
2.393271
AGATCGCTCCTTTGTCCAAG
57.607
50.000
0.00
0.00
0.00
3.61
1736
1799
1.625818
AGATCGCTCCTTTGTCCAAGT
59.374
47.619
0.00
0.00
0.00
3.16
1737
1800
2.832129
AGATCGCTCCTTTGTCCAAGTA
59.168
45.455
0.00
0.00
0.00
2.24
1738
1801
2.450609
TCGCTCCTTTGTCCAAGTAC
57.549
50.000
0.00
0.00
0.00
2.73
1739
1802
1.001633
TCGCTCCTTTGTCCAAGTACC
59.998
52.381
0.00
0.00
0.00
3.34
1740
1803
1.439679
GCTCCTTTGTCCAAGTACCG
58.560
55.000
0.00
0.00
0.00
4.02
1741
1804
1.439679
CTCCTTTGTCCAAGTACCGC
58.560
55.000
0.00
0.00
0.00
5.68
1742
1805
0.759959
TCCTTTGTCCAAGTACCGCA
59.240
50.000
0.00
0.00
0.00
5.69
1743
1806
1.349688
TCCTTTGTCCAAGTACCGCAT
59.650
47.619
0.00
0.00
0.00
4.73
1744
1807
2.568062
TCCTTTGTCCAAGTACCGCATA
59.432
45.455
0.00
0.00
0.00
3.14
1799
1862
6.150976
CAGGAGTGTTAGTTTCCAAATGCATA
59.849
38.462
0.00
0.00
33.32
3.14
1807
1870
6.336842
AGTTTCCAAATGCATATCCTATGC
57.663
37.500
0.00
11.31
44.76
3.14
1820
1883
6.183360
GCATATCCTATGCAAGACATGATCAC
60.183
42.308
12.93
0.00
44.00
3.06
1833
1896
6.602278
AGACATGATCACCATTGATGAGATT
58.398
36.000
0.00
0.00
42.95
2.40
1835
1898
6.362248
ACATGATCACCATTGATGAGATTCA
58.638
36.000
0.00
0.00
42.95
2.57
1837
1900
5.747342
TGATCACCATTGATGAGATTCACA
58.253
37.500
0.00
0.00
42.95
3.58
2006
2101
1.271856
TATTCAGTTGGACCTCGCCA
58.728
50.000
0.00
0.00
35.78
5.69
2018
2113
0.103937
CCTCGCCAAAAACCAAAGCA
59.896
50.000
0.00
0.00
0.00
3.91
2062
2157
2.232696
TGGTACGCTTGTGAGAATAGCA
59.767
45.455
0.00
0.00
34.62
3.49
2369
2549
4.280174
GGTTCGGACTATATACTGCCAGAA
59.720
45.833
0.00
0.00
0.00
3.02
2440
2631
1.602377
CGGGGACAAAAAGACTGTCAC
59.398
52.381
10.88
1.18
44.91
3.67
2456
2647
5.852738
CTGTCACCAGTGTTTCTATGAAG
57.147
43.478
0.00
0.00
33.80
3.02
2462
2653
8.086522
GTCACCAGTGTTTCTATGAAGTACTTA
58.913
37.037
8.42
0.00
0.00
2.24
2862
3053
8.502387
TGTAACATTGCCATTTTTAAATGAAGC
58.498
29.630
15.02
11.45
46.72
3.86
3093
3298
4.323028
CCAGAGCTCTGTCTGAAAATACCA
60.323
45.833
35.47
0.00
46.02
3.25
3097
3302
6.059787
AGCTCTGTCTGAAAATACCATCTT
57.940
37.500
0.00
0.00
0.00
2.40
3161
3366
7.866898
CACCATGTTGTTCTATGACATTTTCAA
59.133
33.333
0.00
0.00
37.92
2.69
3187
3392
5.391312
AAGTTTCATGCTGTATTTCCACC
57.609
39.130
0.00
0.00
0.00
4.61
3208
3413
4.106197
CCACTAGCGTAACACTCTCATTC
58.894
47.826
0.00
0.00
0.00
2.67
3239
3444
4.746611
TGTCACATCTGCATCATCGATAAC
59.253
41.667
0.00
0.00
0.00
1.89
3272
3477
5.047802
CACAGGATGGCACTTACTTTTGAAT
60.048
40.000
0.00
0.00
43.62
2.57
3276
3481
6.071728
AGGATGGCACTTACTTTTGAATGAAG
60.072
38.462
0.00
0.00
0.00
3.02
3284
3489
6.547510
ACTTACTTTTGAATGAAGAGCTTGGT
59.452
34.615
0.00
0.00
0.00
3.67
3295
3500
5.404946
TGAAGAGCTTGGTATACGTGTAAC
58.595
41.667
0.00
0.00
0.00
2.50
3345
3581
9.155975
CAGCTCAAGATACTATTGTACTTTGTT
57.844
33.333
0.00
0.00
32.16
2.83
3638
3874
7.466746
TGTTCTCCCCTCATTAATTTTTCAG
57.533
36.000
0.00
0.00
0.00
3.02
3641
3877
4.340617
TCCCCTCATTAATTTTTCAGCGT
58.659
39.130
0.00
0.00
0.00
5.07
3642
3878
5.502079
TCCCCTCATTAATTTTTCAGCGTA
58.498
37.500
0.00
0.00
0.00
4.42
3658
3894
4.754618
TCAGCGTAATGTTTGAGACAACAT
59.245
37.500
0.00
0.00
42.62
2.71
3663
3899
6.582295
GCGTAATGTTTGAGACAACATTGAAT
59.418
34.615
17.95
0.00
45.83
2.57
3676
3912
7.502226
AGACAACATTGAATGGTAAAGTCAGAA
59.498
33.333
10.27
0.00
33.60
3.02
3688
3924
0.768221
AGTCAGAAACCCCTGGCTCA
60.768
55.000
0.00
0.00
45.11
4.26
3698
3934
1.187974
CCCTGGCTCATGCATTTTGA
58.812
50.000
0.00
0.00
41.91
2.69
3717
4256
2.614520
TGACGTTGGAATTTCGCAGAAA
59.385
40.909
6.26
6.26
45.90
2.52
3735
4274
5.792468
GCAGAAAAGCGAGAAAATAACTGAG
59.208
40.000
0.00
0.00
0.00
3.35
3739
4278
1.671328
GCGAGAAAATAACTGAGCCCC
59.329
52.381
0.00
0.00
0.00
5.80
3740
4279
2.289565
CGAGAAAATAACTGAGCCCCC
58.710
52.381
0.00
0.00
0.00
5.40
3741
4280
2.355716
CGAGAAAATAACTGAGCCCCCA
60.356
50.000
0.00
0.00
0.00
4.96
3751
4290
1.351017
CTGAGCCCCCAACAAACTAGA
59.649
52.381
0.00
0.00
0.00
2.43
3760
4301
2.032030
CCAACAAACTAGACTTGTGGCG
60.032
50.000
13.33
7.38
37.10
5.69
3788
4329
4.012374
GTTGCAAGATCCCAGATGAGAAA
58.988
43.478
0.00
0.00
0.00
2.52
3840
4564
3.012934
ACGGGGAAAGGAAACATATGG
57.987
47.619
7.80
0.00
0.00
2.74
3864
4588
2.664402
ACAAGGCACAGTTTCATCCT
57.336
45.000
0.00
0.00
0.00
3.24
3949
4673
7.287810
AGAAGGAACTAAAATGGTACACAACT
58.712
34.615
0.00
0.00
39.59
3.16
4180
4908
2.301870
TGTCTAAATGCCCACTCGAAGT
59.698
45.455
0.00
0.00
0.00
3.01
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
14
15
8.220755
ACAAGTGTACTAAATGTGTTCACAAT
57.779
30.769
9.68
0.00
32.77
2.71
111
114
9.190317
AGAAGGGGTGAATAGATACAAATTTTC
57.810
33.333
0.00
0.00
0.00
2.29
119
122
8.840200
TGGATATAGAAGGGGTGAATAGATAC
57.160
38.462
0.00
0.00
0.00
2.24
122
125
8.757307
AAATGGATATAGAAGGGGTGAATAGA
57.243
34.615
0.00
0.00
0.00
1.98
123
126
8.605947
TGAAATGGATATAGAAGGGGTGAATAG
58.394
37.037
0.00
0.00
0.00
1.73
140
143
7.307131
ACTTGTTGAAAGGATTGAAATGGAT
57.693
32.000
0.00
0.00
0.00
3.41
146
149
5.414454
CCCGATACTTGTTGAAAGGATTGAA
59.586
40.000
0.00
0.00
0.00
2.69
147
150
4.941263
CCCGATACTTGTTGAAAGGATTGA
59.059
41.667
0.00
0.00
0.00
2.57
148
151
4.700213
ACCCGATACTTGTTGAAAGGATTG
59.300
41.667
0.00
0.00
0.00
2.67
149
152
4.918588
ACCCGATACTTGTTGAAAGGATT
58.081
39.130
0.00
0.00
0.00
3.01
160
163
0.527817
GCACGAGGACCCGATACTTG
60.528
60.000
9.04
0.00
0.00
3.16
161
164
0.683504
AGCACGAGGACCCGATACTT
60.684
55.000
9.04
0.00
0.00
2.24
168
171
0.671251
CTCATAGAGCACGAGGACCC
59.329
60.000
0.00
0.00
0.00
4.46
170
173
3.468770
TCTACTCATAGAGCACGAGGAC
58.531
50.000
0.00
0.00
32.16
3.85
194
197
4.075682
GGCCCCTAGAAATCTAATTGCTC
58.924
47.826
0.00
0.00
28.94
4.26
195
198
3.181428
GGGCCCCTAGAAATCTAATTGCT
60.181
47.826
12.23
0.00
31.60
3.91
212
225
0.106519
TACTACTACACGAGGGGCCC
60.107
60.000
17.12
17.12
0.00
5.80
219
232
8.728337
ACTCATACAGAAATACTACTACACGA
57.272
34.615
0.00
0.00
0.00
4.35
555
568
7.701809
AAGAGCGTTTAGATCACTATTTAGC
57.298
36.000
0.00
0.00
37.82
3.09
570
583
9.057089
CCTCCATAAAGAAATATAAGAGCGTTT
57.943
33.333
0.00
0.00
0.00
3.60
571
584
7.661847
CCCTCCATAAAGAAATATAAGAGCGTT
59.338
37.037
0.00
0.00
0.00
4.84
572
585
7.016268
TCCCTCCATAAAGAAATATAAGAGCGT
59.984
37.037
0.00
0.00
0.00
5.07
573
586
7.386851
TCCCTCCATAAAGAAATATAAGAGCG
58.613
38.462
0.00
0.00
0.00
5.03
574
587
8.379331
ACTCCCTCCATAAAGAAATATAAGAGC
58.621
37.037
0.00
0.00
0.00
4.09
614
627
8.887036
AATTTTGGAAGGTTGATCAAGTTTAC
57.113
30.769
8.80
7.68
0.00
2.01
632
645
3.349022
TCTGTACCCGGCTAAATTTTGG
58.651
45.455
0.00
0.00
0.00
3.28
642
685
4.083484
GCATATTAACATTCTGTACCCGGC
60.083
45.833
0.00
0.00
0.00
6.13
665
708
9.886132
AGTTGTTGTACTACCTCCATATTAAAG
57.114
33.333
4.98
0.00
0.00
1.85
692
735
1.743252
GCTCAGAGTCTTTGCGGGG
60.743
63.158
0.00
0.00
0.00
5.73
721
764
9.052759
GTACTACTCATTTTCCACTTCAAAGAA
57.947
33.333
0.00
0.00
0.00
2.52
725
768
7.771361
TGTTGTACTACTCATTTTCCACTTCAA
59.229
33.333
8.88
0.00
0.00
2.69
730
773
7.699566
TGTTTGTTGTACTACTCATTTTCCAC
58.300
34.615
8.88
0.00
0.00
4.02
731
774
7.554835
ACTGTTTGTTGTACTACTCATTTTCCA
59.445
33.333
8.88
0.00
0.00
3.53
774
817
4.572985
TTGTTCTGTGCTCTTTTCATGG
57.427
40.909
0.00
0.00
0.00
3.66
775
818
5.461078
CCTTTTGTTCTGTGCTCTTTTCATG
59.539
40.000
0.00
0.00
0.00
3.07
776
819
5.452356
CCCTTTTGTTCTGTGCTCTTTTCAT
60.452
40.000
0.00
0.00
0.00
2.57
777
820
4.142182
CCCTTTTGTTCTGTGCTCTTTTCA
60.142
41.667
0.00
0.00
0.00
2.69
798
841
1.610379
AGGTTTGCAGATTGCCCCC
60.610
57.895
0.00
0.00
44.23
5.40
854
897
2.125391
GCAGCAGCGGATGTGAGA
60.125
61.111
3.61
0.00
31.62
3.27
937
987
4.847444
GAAGGAGCTGGGAGGCGC
62.847
72.222
0.00
0.00
37.29
6.53
952
1002
1.878088
CGCAGGATAGGTAGCTACGAA
59.122
52.381
17.48
8.41
0.00
3.85
957
1007
1.776662
TTGTCGCAGGATAGGTAGCT
58.223
50.000
0.00
0.00
0.00
3.32
958
1008
2.821991
ATTGTCGCAGGATAGGTAGC
57.178
50.000
0.00
0.00
0.00
3.58
959
1009
3.056749
GGGTATTGTCGCAGGATAGGTAG
60.057
52.174
0.00
0.00
0.00
3.18
960
1010
2.895404
GGGTATTGTCGCAGGATAGGTA
59.105
50.000
0.00
0.00
0.00
3.08
961
1011
1.692519
GGGTATTGTCGCAGGATAGGT
59.307
52.381
0.00
0.00
0.00
3.08
962
1012
1.691976
TGGGTATTGTCGCAGGATAGG
59.308
52.381
0.00
0.00
0.00
2.57
963
1013
3.032017
CTGGGTATTGTCGCAGGATAG
57.968
52.381
0.00
0.00
42.20
2.08
968
1018
2.173669
CGCCTGGGTATTGTCGCAG
61.174
63.158
0.00
0.00
44.38
5.18
969
1019
2.125310
CGCCTGGGTATTGTCGCA
60.125
61.111
0.00
0.00
0.00
5.10
970
1020
2.895372
CCGCCTGGGTATTGTCGC
60.895
66.667
0.00
0.00
0.00
5.19
1081
1131
0.030092
TTCGGGAGATTCCTGGGGAT
60.030
55.000
4.20
0.00
43.23
3.85
1325
1379
9.338291
GCAAATTGCAACATCATATATAGTGAG
57.662
33.333
13.73
0.00
44.26
3.51
1392
1452
7.700656
ACGCTTGTTGGATAGCATTTTATAAAC
59.299
33.333
0.00
0.00
37.23
2.01
1415
1475
1.153628
ATCCACCTACAGCGAACGC
60.154
57.895
11.31
11.31
42.33
4.84
1464
1524
4.459331
CGGCATGTTCCCGCAACG
62.459
66.667
0.00
0.00
39.22
4.10
1479
1539
3.991773
TGTCGTTAGTTTGAAGGAATCGG
59.008
43.478
0.00
0.00
0.00
4.18
1481
1541
8.797266
AAAAATGTCGTTAGTTTGAAGGAATC
57.203
30.769
0.00
0.00
0.00
2.52
1508
1568
3.553922
CCGGCAACAAAGGATTTTGCTAA
60.554
43.478
5.59
0.00
46.05
3.09
1509
1569
2.029470
CCGGCAACAAAGGATTTTGCTA
60.029
45.455
5.59
0.00
46.05
3.49
1529
1589
2.562298
TCAGAAACACATGGCAATTCCC
59.438
45.455
0.00
0.00
0.00
3.97
1531
1591
5.125100
TCTTCAGAAACACATGGCAATTC
57.875
39.130
0.00
0.00
0.00
2.17
1577
1637
6.428385
TTTGCGAATGTTTTTGTGGAAAAT
57.572
29.167
0.00
0.00
39.29
1.82
1592
1654
3.624777
AGGAGGAATGACATTTGCGAAT
58.375
40.909
1.39
0.00
0.00
3.34
1607
1669
1.798735
CGAACGTTCGCTAGGAGGA
59.201
57.895
34.54
0.00
44.26
3.71
1650
1712
7.758820
TTTCCTTTCTCAACAGGGGTATATA
57.241
36.000
0.00
0.00
0.00
0.86
1660
1722
6.474102
GCAAACGTTTATTTCCTTTCTCAACA
59.526
34.615
14.20
0.00
0.00
3.33
1733
1796
2.094078
TGCGGTACTTTATGCGGTACTT
60.094
45.455
0.00
0.00
38.52
2.24
1734
1797
1.477700
TGCGGTACTTTATGCGGTACT
59.522
47.619
0.00
0.00
38.52
2.73
1735
1798
1.925229
TGCGGTACTTTATGCGGTAC
58.075
50.000
0.00
0.00
37.97
3.34
1736
1799
2.894763
ATGCGGTACTTTATGCGGTA
57.105
45.000
0.00
0.00
0.00
4.02
1737
1800
2.894763
TATGCGGTACTTTATGCGGT
57.105
45.000
0.00
0.00
0.00
5.68
1738
1801
4.742438
ATTTATGCGGTACTTTATGCGG
57.258
40.909
0.00
0.00
0.00
5.69
1739
1802
5.985781
AGAATTTATGCGGTACTTTATGCG
58.014
37.500
0.00
0.00
0.00
4.73
1740
1803
7.913297
TCAAAGAATTTATGCGGTACTTTATGC
59.087
33.333
0.00
0.00
35.03
3.14
1741
1804
9.950680
ATCAAAGAATTTATGCGGTACTTTATG
57.049
29.630
0.00
0.00
35.03
1.90
1744
1807
9.705290
AAAATCAAAGAATTTATGCGGTACTTT
57.295
25.926
0.00
0.00
35.03
2.66
1799
1862
4.103627
TGGTGATCATGTCTTGCATAGGAT
59.896
41.667
0.00
0.00
35.74
3.24
1807
1870
5.820947
TCTCATCAATGGTGATCATGTCTTG
59.179
40.000
0.00
1.54
42.88
3.02
1835
1898
8.809066
TGCCTAATCCGTTAACTATATGTATGT
58.191
33.333
3.71
0.00
0.00
2.29
1859
1922
5.237815
TCGGAAATCACATACTATGGATGC
58.762
41.667
1.11
0.00
33.60
3.91
2006
2101
4.094146
CACATTTCCGTTGCTTTGGTTTTT
59.906
37.500
0.00
0.00
0.00
1.94
2018
2113
3.937814
TGCTCTATGACACATTTCCGTT
58.062
40.909
0.00
0.00
0.00
4.44
2062
2157
7.437713
TGAAGGTAGTCCTGTCATTATCAAT
57.562
36.000
0.00
0.00
44.35
2.57
2173
2353
4.819630
ACATTTCCTCGTTGCTAAACTTCA
59.180
37.500
0.00
0.00
33.87
3.02
2340
2520
5.050295
GCAGTATATAGTCCGAACCTTTTGC
60.050
44.000
0.00
0.00
0.00
3.68
2440
2631
9.436957
AACATAAGTACTTCATAGAAACACTGG
57.563
33.333
12.39
0.00
0.00
4.00
2632
2823
1.952102
AAGCCCAGAATGCCGCAATG
61.952
55.000
0.00
0.00
32.92
2.82
2828
3019
3.500448
TGGCAATGTTACAGTTGAGGA
57.500
42.857
10.20
0.00
0.00
3.71
2862
3053
8.665685
GGACTTGTGGTAATACAAAGATAACAG
58.334
37.037
6.70
0.00
39.81
3.16
3072
3277
5.424895
AGATGGTATTTTCAGACAGAGCTCT
59.575
40.000
11.45
11.45
0.00
4.09
3161
3366
7.147976
GTGGAAATACAGCATGAAACTTTCTT
58.852
34.615
0.00
0.00
39.69
2.52
3187
3392
4.795795
CAGAATGAGAGTGTTACGCTAGTG
59.204
45.833
0.59
0.59
39.69
2.74
3208
3413
0.520404
GCAGATGTGACACAAGCCAG
59.480
55.000
13.23
3.54
0.00
4.85
3239
3444
1.539388
TGCCATCCTGTGCGTTAAAAG
59.461
47.619
0.00
0.00
0.00
2.27
3272
3477
5.184479
AGTTACACGTATACCAAGCTCTTCA
59.816
40.000
0.00
0.00
0.00
3.02
3276
3481
4.561606
CACAGTTACACGTATACCAAGCTC
59.438
45.833
0.00
0.00
0.00
4.09
3284
3489
7.646526
GTGCATAGAATCACAGTTACACGTATA
59.353
37.037
0.00
0.00
33.63
1.47
3295
3500
6.986231
TGTAGTAATGGTGCATAGAATCACAG
59.014
38.462
0.00
0.00
35.04
3.66
3362
3598
4.082571
ACTTTTCCCTGCGAAGAATGAATG
60.083
41.667
0.00
0.00
0.00
2.67
3366
3602
3.923017
AACTTTTCCCTGCGAAGAATG
57.077
42.857
0.00
0.00
0.00
2.67
3448
3684
2.829720
TGTCGTAGGCAGGATGTACTTT
59.170
45.455
0.00
0.00
36.97
2.66
3658
3894
4.830600
GGGGTTTCTGACTTTACCATTCAA
59.169
41.667
0.00
0.00
32.20
2.69
3663
3899
2.107552
CCAGGGGTTTCTGACTTTACCA
59.892
50.000
0.00
0.00
36.93
3.25
3676
3912
0.252375
AAATGCATGAGCCAGGGGTT
60.252
50.000
0.00
0.00
41.13
4.11
3688
3924
4.385447
CGAAATTCCAACGTCAAAATGCAT
59.615
37.500
0.00
0.00
0.00
3.96
3698
3934
3.628017
CTTTTCTGCGAAATTCCAACGT
58.372
40.909
4.91
0.00
0.00
3.99
3717
4256
3.010420
GGGCTCAGTTATTTTCTCGCTT
58.990
45.455
0.00
0.00
0.00
4.68
3731
4270
1.351017
TCTAGTTTGTTGGGGGCTCAG
59.649
52.381
0.00
0.00
0.00
3.35
3735
4274
1.886542
CAAGTCTAGTTTGTTGGGGGC
59.113
52.381
0.00
0.00
0.00
5.80
3739
4278
2.032030
CGCCACAAGTCTAGTTTGTTGG
60.032
50.000
11.09
14.51
36.67
3.77
3740
4279
2.602217
GCGCCACAAGTCTAGTTTGTTG
60.602
50.000
0.00
9.72
36.67
3.33
3741
4280
1.602377
GCGCCACAAGTCTAGTTTGTT
59.398
47.619
0.00
0.00
36.67
2.83
3840
4564
4.537015
GATGAAACTGTGCCTTGTAACAC
58.463
43.478
0.00
0.00
37.31
3.32
3949
4673
1.267121
AGAGTCGCCTTTAGCCTCAA
58.733
50.000
0.00
0.00
38.78
3.02
4180
4908
2.363306
ACATCTTGTTGCTGGGAACA
57.637
45.000
3.65
3.65
39.59
3.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.