Multiple sequence alignment - TraesCS3B01G331400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G331400 chr3B 100.000 5909 0 0 1 5909 536439140 536433232 0.000000e+00 10912.0
1 TraesCS3B01G331400 chr3B 79.141 163 31 3 5748 5909 794333435 794333275 6.260000e-20 110.0
2 TraesCS3B01G331400 chr3D 93.829 4489 197 37 743 5209 410524176 410519746 0.000000e+00 6682.0
3 TraesCS3B01G331400 chr3D 89.316 599 46 8 1 584 538536093 538536688 0.000000e+00 736.0
4 TraesCS3B01G331400 chr3D 94.118 323 13 5 1 323 12863599 12863915 2.480000e-133 486.0
5 TraesCS3B01G331400 chr3D 86.649 367 23 6 5356 5701 410519730 410519369 3.340000e-102 383.0
6 TraesCS3B01G331400 chr3D 100.000 33 0 0 5712 5744 410519383 410519351 1.780000e-05 62.1
7 TraesCS3B01G331400 chr3A 94.842 3606 127 32 1587 5169 541207490 541211059 0.000000e+00 5574.0
8 TraesCS3B01G331400 chr3A 89.891 920 65 10 672 1584 541206412 541207310 0.000000e+00 1158.0
9 TraesCS3B01G331400 chr3A 88.396 293 25 5 5267 5551 541211072 541211363 1.580000e-90 344.0
10 TraesCS3B01G331400 chr3A 93.564 202 9 3 5543 5741 541219441 541219641 1.240000e-76 298.0
11 TraesCS3B01G331400 chr3A 85.586 111 16 0 3131 3241 10305868 10305758 3.740000e-22 117.0
12 TraesCS3B01G331400 chr2D 88.626 633 39 15 1 605 223005226 223004599 0.000000e+00 739.0
13 TraesCS3B01G331400 chr2D 88.562 577 66 0 2525 3101 639428663 639429239 0.000000e+00 701.0
14 TraesCS3B01G331400 chr2D 86.371 631 82 3 3309 3937 639429364 639429992 0.000000e+00 686.0
15 TraesCS3B01G331400 chr2D 81.409 667 101 11 4247 4909 639430943 639431590 1.890000e-144 523.0
16 TraesCS3B01G331400 chr2D 91.322 242 16 4 351 587 573623761 573624002 5.710000e-85 326.0
17 TraesCS3B01G331400 chr2D 92.174 230 15 3 357 584 632675286 632675514 7.390000e-84 322.0
18 TraesCS3B01G331400 chr2D 91.176 238 17 4 351 584 151650621 151650858 2.660000e-83 320.0
19 TraesCS3B01G331400 chr2D 83.750 160 24 2 4248 4406 33744325 33744167 3.690000e-32 150.0
20 TraesCS3B01G331400 chr4B 89.041 584 63 1 2518 3101 671741170 671740588 0.000000e+00 723.0
21 TraesCS3B01G331400 chr4B 92.766 235 12 3 355 584 249140684 249140918 9.490000e-88 335.0
22 TraesCS3B01G331400 chr4B 99.441 179 1 0 3486 3664 24752202 24752024 5.710000e-85 326.0
23 TraesCS3B01G331400 chr4B 93.711 159 10 0 5751 5909 636690401 636690559 7.650000e-59 239.0
24 TraesCS3B01G331400 chr4B 84.956 113 15 2 3128 3239 215918437 215918326 4.840000e-21 113.0
25 TraesCS3B01G331400 chrUn 88.908 577 64 0 2525 3101 100324990 100325566 0.000000e+00 712.0
26 TraesCS3B01G331400 chrUn 86.688 631 80 3 3309 3937 100325692 100326320 0.000000e+00 697.0
27 TraesCS3B01G331400 chrUn 86.735 588 60 6 2525 3101 30351774 30351194 6.460000e-179 638.0
28 TraesCS3B01G331400 chr1A 88.356 584 67 1 2518 3101 490523330 490522748 0.000000e+00 701.0
29 TraesCS3B01G331400 chr1A 86.529 631 81 3 3309 3937 490522619 490521991 0.000000e+00 691.0
30 TraesCS3B01G331400 chr1D 88.176 592 53 10 1 585 369342665 369342084 0.000000e+00 689.0
31 TraesCS3B01G331400 chr1D 87.776 589 54 9 1 584 187579593 187579018 0.000000e+00 673.0
32 TraesCS3B01G331400 chr1D 93.789 322 15 3 1 322 21945697 21945381 4.140000e-131 479.0
33 TraesCS3B01G331400 chr1D 100.000 159 0 0 5751 5909 53257089 53256931 1.610000e-75 294.0
34 TraesCS3B01G331400 chr1D 82.692 104 18 0 3288 3391 47949294 47949191 6.310000e-15 93.5
35 TraesCS3B01G331400 chr5A 85.895 631 84 4 3309 3937 659180300 659180927 0.000000e+00 667.0
36 TraesCS3B01G331400 chr5A 87.897 504 59 2 2518 3020 709741359 709740857 5.100000e-165 592.0
37 TraesCS3B01G331400 chr6D 86.755 604 41 21 1 584 219769348 219768764 2.320000e-178 636.0
38 TraesCS3B01G331400 chr6D 91.176 238 17 4 351 585 183849172 183848936 2.660000e-83 320.0
39 TraesCS3B01G331400 chr6D 89.922 258 13 11 363 610 410426122 410426376 2.660000e-83 320.0
40 TraesCS3B01G331400 chr1B 93.447 351 18 3 1 349 41262122 41262469 3.160000e-142 516.0
41 TraesCS3B01G331400 chr1B 97.484 159 4 0 5751 5909 110794551 110794393 7.550000e-69 272.0
42 TraesCS3B01G331400 chr1B 94.631 149 8 0 5761 5909 332162162 332162310 1.280000e-56 231.0
43 TraesCS3B01G331400 chr7D 94.953 317 13 2 1 314 3812339 3812655 1.480000e-135 494.0
44 TraesCS3B01G331400 chr7D 86.957 115 12 3 3127 3240 514658916 514658804 6.220000e-25 126.0
45 TraesCS3B01G331400 chr7D 84.685 111 17 0 3131 3241 74592408 74592518 1.740000e-20 111.0
46 TraesCS3B01G331400 chr7D 85.047 107 16 0 3132 3238 207135250 207135144 6.260000e-20 110.0
47 TraesCS3B01G331400 chr7B 92.113 355 21 6 1 355 6653807 6654154 1.480000e-135 494.0
48 TraesCS3B01G331400 chr7B 86.957 138 12 6 5751 5885 726693852 726693986 3.690000e-32 150.0
49 TraesCS3B01G331400 chr6B 93.902 328 15 3 30 357 628535465 628535143 1.910000e-134 490.0
50 TraesCS3B01G331400 chr5B 91.136 361 19 10 1 355 614196561 614196914 1.490000e-130 477.0
51 TraesCS3B01G331400 chr5B 98.113 159 3 0 5751 5909 661532022 661531864 1.620000e-70 278.0
52 TraesCS3B01G331400 chr5B 83.465 127 19 2 5750 5875 433043836 433043961 3.740000e-22 117.0
53 TraesCS3B01G331400 chr5D 85.507 138 14 6 5751 5885 101264817 101264683 7.990000e-29 139.0
54 TraesCS3B01G331400 chr5D 87.387 111 14 0 3132 3242 282007118 282007008 1.730000e-25 128.0
55 TraesCS3B01G331400 chr2B 86.364 110 15 0 3132 3241 547540367 547540476 2.890000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G331400 chr3B 536433232 536439140 5908 True 10912.000000 10912 100.000000 1 5909 1 chr3B.!!$R1 5908
1 TraesCS3B01G331400 chr3D 410519351 410524176 4825 True 2375.700000 6682 93.492667 743 5744 3 chr3D.!!$R1 5001
2 TraesCS3B01G331400 chr3D 538536093 538536688 595 False 736.000000 736 89.316000 1 584 1 chr3D.!!$F2 583
3 TraesCS3B01G331400 chr3A 541206412 541211363 4951 False 2358.666667 5574 91.043000 672 5551 3 chr3A.!!$F2 4879
4 TraesCS3B01G331400 chr2D 223004599 223005226 627 True 739.000000 739 88.626000 1 605 1 chr2D.!!$R2 604
5 TraesCS3B01G331400 chr2D 639428663 639431590 2927 False 636.666667 701 85.447333 2525 4909 3 chr2D.!!$F4 2384
6 TraesCS3B01G331400 chr4B 671740588 671741170 582 True 723.000000 723 89.041000 2518 3101 1 chr4B.!!$R3 583
7 TraesCS3B01G331400 chrUn 100324990 100326320 1330 False 704.500000 712 87.798000 2525 3937 2 chrUn.!!$F1 1412
8 TraesCS3B01G331400 chrUn 30351194 30351774 580 True 638.000000 638 86.735000 2525 3101 1 chrUn.!!$R1 576
9 TraesCS3B01G331400 chr1A 490521991 490523330 1339 True 696.000000 701 87.442500 2518 3937 2 chr1A.!!$R1 1419
10 TraesCS3B01G331400 chr1D 369342084 369342665 581 True 689.000000 689 88.176000 1 585 1 chr1D.!!$R5 584
11 TraesCS3B01G331400 chr1D 187579018 187579593 575 True 673.000000 673 87.776000 1 584 1 chr1D.!!$R4 583
12 TraesCS3B01G331400 chr5A 659180300 659180927 627 False 667.000000 667 85.895000 3309 3937 1 chr5A.!!$F1 628
13 TraesCS3B01G331400 chr5A 709740857 709741359 502 True 592.000000 592 87.897000 2518 3020 1 chr5A.!!$R1 502
14 TraesCS3B01G331400 chr6D 219768764 219769348 584 True 636.000000 636 86.755000 1 584 1 chr6D.!!$R2 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 673 0.391130 GTCTGGTGCGCCATTAGTGA 60.391 55.000 21.54 10.47 45.05 3.41 F
811 940 0.854218 TTCTTGGGCCAGGTTAACCA 59.146 50.000 26.26 1.46 38.89 3.67 F
1574 1707 0.321564 CTGTTGGCAGATCGGTTCCA 60.322 55.000 0.00 0.00 45.28 3.53 F
2183 2499 1.075374 TCCATTTTACTGCCTGGCTGT 59.925 47.619 29.91 29.91 42.86 4.40 F
2185 2501 2.094545 CCATTTTACTGCCTGGCTGTTC 60.095 50.000 31.70 0.00 40.85 3.18 F
3688 4093 1.609072 GAGGTTCTTCTTGTTGGTGGC 59.391 52.381 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1609 0.035534 TGCTAAGCCAAATCGCCAGA 60.036 50.000 0.0 0.0 0.00 3.86 R
1902 2213 0.694196 TTGGGTAACTGGGGCAGTAC 59.306 55.000 0.0 0.0 44.62 2.73 R
3152 3545 0.035317 ACATCTGCCTGAGCGACAAA 59.965 50.000 0.0 0.0 44.31 2.83 R
3493 3898 2.235898 AGGAAGGTTGATCTCAGTCTGC 59.764 50.000 0.0 0.0 0.00 4.26 R
4057 4565 3.517296 TCACAGGAAGCCACCATAAAA 57.483 42.857 0.0 0.0 0.00 1.52 R
5669 6810 0.110486 ACTTGGACGGCTTGGTCAAT 59.890 50.000 0.0 0.0 38.70 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 126 6.189859 TCTATTTTGCAAATGAGGTGAGGAT 58.810 36.000 13.65 1.88 0.00 3.24
173 175 1.836802 AGGAGGTGGAGAGAATGAAGC 59.163 52.381 0.00 0.00 0.00 3.86
177 179 1.092345 GTGGAGAGAATGAAGCGGGC 61.092 60.000 0.00 0.00 0.00 6.13
179 181 0.813210 GGAGAGAATGAAGCGGGCAG 60.813 60.000 0.00 0.00 0.00 4.85
237 239 2.844348 CTGGTCCCAGGTTACTAATGGT 59.156 50.000 5.37 0.00 40.17 3.55
314 331 6.423604 GTGTGCCATTAGTAGTTTTGCAAAAT 59.576 34.615 26.24 17.12 0.00 1.82
315 332 7.596995 GTGTGCCATTAGTAGTTTTGCAAAATA 59.403 33.333 26.24 16.23 0.00 1.40
316 333 8.144478 TGTGCCATTAGTAGTTTTGCAAAATAA 58.856 29.630 26.24 19.70 0.00 1.40
317 334 9.150348 GTGCCATTAGTAGTTTTGCAAAATAAT 57.850 29.630 26.24 20.85 0.00 1.28
349 366 6.417191 AAAATATATACTAATGGCGCACCG 57.583 37.500 10.83 0.00 39.70 4.94
350 367 4.730949 ATATATACTAATGGCGCACCGT 57.269 40.909 10.83 0.65 39.70 4.83
352 369 1.295792 ATACTAATGGCGCACCGTTG 58.704 50.000 10.83 1.68 45.17 4.10
353 370 1.363145 TACTAATGGCGCACCGTTGC 61.363 55.000 10.83 0.00 45.17 4.17
381 456 6.693315 AAAATTAGTAATGGCGCACTATGT 57.307 33.333 10.83 0.00 0.00 2.29
390 465 2.108514 CGCACTATGTGGCTGGTGG 61.109 63.158 0.00 0.00 33.64 4.61
392 467 1.685224 CACTATGTGGCTGGTGGGT 59.315 57.895 0.00 0.00 0.00 4.51
407 527 5.496556 CTGGTGGGTCATTAGTATGTTTGA 58.503 41.667 0.00 0.00 33.34 2.69
444 566 0.393448 TTGTTACTAGTGGCGCACCA 59.607 50.000 10.83 0.00 46.51 4.17
471 593 0.727398 GGTGCGCCATTAGTGTCTTC 59.273 55.000 12.58 0.00 34.09 2.87
551 673 0.391130 GTCTGGTGCGCCATTAGTGA 60.391 55.000 21.54 10.47 45.05 3.41
589 712 4.816925 GCCCTTTTCCTAGTAGTGCATAAG 59.183 45.833 0.00 0.00 0.00 1.73
590 713 5.396436 GCCCTTTTCCTAGTAGTGCATAAGA 60.396 44.000 0.00 0.00 0.00 2.10
591 714 6.284459 CCCTTTTCCTAGTAGTGCATAAGAG 58.716 44.000 0.00 0.00 0.00 2.85
594 717 8.861086 CCTTTTCCTAGTAGTGCATAAGAGATA 58.139 37.037 0.00 0.00 0.00 1.98
688 811 8.307921 ACGGTCTTTTGTCTTCTCTAAATAAC 57.692 34.615 0.00 0.00 0.00 1.89
713 836 5.394738 TGGAATGTATAACCACCACCAAAA 58.605 37.500 0.00 0.00 0.00 2.44
811 940 0.854218 TTCTTGGGCCAGGTTAACCA 59.146 50.000 26.26 1.46 38.89 3.67
834 963 6.451393 CAAAGTGACCGGAATAAATGGAAAA 58.549 36.000 9.46 0.00 0.00 2.29
835 964 6.658188 AAGTGACCGGAATAAATGGAAAAA 57.342 33.333 9.46 0.00 0.00 1.94
847 976 5.440207 AAATGGAAAAATTGCTAGCCCAT 57.560 34.783 13.29 12.60 34.70 4.00
888 1017 3.219198 GGCCCATGTCGCCCATTC 61.219 66.667 9.43 0.00 40.78 2.67
920 1049 4.587684 TCAATAATTAGACTCCCGTCCTCC 59.412 45.833 0.00 0.00 41.16 4.30
1084 1214 4.566987 GGTTAGTTTGTCACCTCCTACAG 58.433 47.826 0.00 0.00 0.00 2.74
1103 1233 1.064537 AGGAGTCTCGTCCTACCTTCC 60.065 57.143 0.00 0.00 45.83 3.46
1135 1265 2.203224 TCGCCTAGCTCCCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
1182 1312 1.459730 CCCAGTACCCTAGGCCTCC 60.460 68.421 9.68 0.00 0.00 4.30
1183 1313 1.833049 CCAGTACCCTAGGCCTCCG 60.833 68.421 9.68 0.62 0.00 4.63
1190 1320 1.151908 CCTAGGCCTCCGCTAGTCT 59.848 63.158 9.68 0.00 34.44 3.24
1242 1372 4.120589 GCTTTAGATTTACCTCCGTCTGG 58.879 47.826 0.00 0.00 0.00 3.86
1276 1407 1.369625 CGAATTTCCGGTTCCCAGAG 58.630 55.000 0.00 0.00 0.00 3.35
1297 1428 1.156736 CCTGCAGGTTAACTCGGTTG 58.843 55.000 25.53 0.00 0.00 3.77
1307 1438 4.211794 GGTTAACTCGGTTGTCATTTTCGA 59.788 41.667 5.42 0.00 0.00 3.71
1391 1522 2.890311 TGCTTGACCATGTTCGGATTTT 59.110 40.909 0.00 0.00 0.00 1.82
1404 1535 4.475051 TCGGATTTTCCCACTTCGATTA 57.525 40.909 0.00 0.00 31.13 1.75
1507 1640 2.458592 GCTTAGCATTAGCCGTGTTG 57.541 50.000 0.00 0.00 43.56 3.33
1528 1661 5.136250 TGTTGTGTTGCTTTATTTTTGCG 57.864 34.783 0.00 0.00 0.00 4.85
1531 1664 3.806521 TGTGTTGCTTTATTTTTGCGCAT 59.193 34.783 12.75 0.00 0.00 4.73
1534 1667 3.037431 TGCTTTATTTTTGCGCATGGT 57.963 38.095 12.75 0.00 0.00 3.55
1545 1678 3.717400 TGCGCATGGTTTTGTAAGAAA 57.283 38.095 5.66 0.00 0.00 2.52
1559 1692 5.554822 TGTAAGAAAGAAAACGTGCTGTT 57.445 34.783 0.00 0.00 44.59 3.16
1574 1707 0.321564 CTGTTGGCAGATCGGTTCCA 60.322 55.000 0.00 0.00 45.28 3.53
1592 1902 6.346518 CGGTTCCATTGTTTTTGTCAATAAGC 60.347 38.462 0.00 0.00 34.34 3.09
1604 1914 2.286294 GTCAATAAGCGGATCTGTGCTG 59.714 50.000 2.89 0.00 41.46 4.41
1747 2057 4.183865 CGAATGTTCTGCATGTCTCCTTA 58.816 43.478 0.00 0.00 37.96 2.69
1756 2066 6.577103 TCTGCATGTCTCCTTAACAATCTAG 58.423 40.000 0.00 0.00 0.00 2.43
1760 2070 8.318412 TGCATGTCTCCTTAACAATCTAGTTTA 58.682 33.333 0.00 0.00 33.07 2.01
1767 2077 9.110502 CTCCTTAACAATCTAGTTTATTCCACC 57.889 37.037 0.00 0.00 33.07 4.61
1772 2082 6.180472 ACAATCTAGTTTATTCCACCCAGTG 58.820 40.000 0.00 0.00 0.00 3.66
1852 2163 7.752638 TGATGATCACATGAAAATCTCCCTAT 58.247 34.615 0.00 0.00 36.82 2.57
1887 2198 9.382244 CTAAGCTTGAAATAACGCAATTATACC 57.618 33.333 9.86 0.00 32.86 2.73
1902 2213 9.759259 CGCAATTATACCAGTTATGTAATGATG 57.241 33.333 0.00 0.00 0.00 3.07
1911 2222 5.470098 CAGTTATGTAATGATGTACTGCCCC 59.530 44.000 0.00 0.00 0.00 5.80
1932 2243 3.509967 CCAGTTACCCAATTCTGAAACCC 59.490 47.826 0.00 0.00 0.00 4.11
1934 2245 3.151554 GTTACCCAATTCTGAAACCCGT 58.848 45.455 0.00 0.00 0.00 5.28
1984 2298 3.056250 TGCAAGTCAGGAGTTCTCATCTC 60.056 47.826 2.24 0.00 0.00 2.75
2014 2329 6.954487 TGGTCCCTTTTCTAGTTTTTCTTC 57.046 37.500 0.00 0.00 0.00 2.87
2015 2330 5.831525 TGGTCCCTTTTCTAGTTTTTCTTCC 59.168 40.000 0.00 0.00 0.00 3.46
2022 2337 8.246871 CCTTTTCTAGTTTTTCTTCCATCATCC 58.753 37.037 0.00 0.00 0.00 3.51
2043 2358 4.634004 TCCGTGTTAATCTTATGCAGGTTG 59.366 41.667 0.00 0.00 0.00 3.77
2044 2359 4.342772 CGTGTTAATCTTATGCAGGTTGC 58.657 43.478 0.00 0.00 45.29 4.17
2059 2374 6.399204 GCAGGTTGCAATTTCTATTCTTTG 57.601 37.500 0.59 0.00 44.26 2.77
2060 2375 6.158598 GCAGGTTGCAATTTCTATTCTTTGA 58.841 36.000 0.59 0.00 44.26 2.69
2061 2376 6.089954 GCAGGTTGCAATTTCTATTCTTTGAC 59.910 38.462 0.59 0.00 44.26 3.18
2062 2377 7.147312 CAGGTTGCAATTTCTATTCTTTGACA 58.853 34.615 0.59 0.00 0.00 3.58
2063 2378 7.816031 CAGGTTGCAATTTCTATTCTTTGACAT 59.184 33.333 0.59 0.00 0.00 3.06
2064 2379 8.370182 AGGTTGCAATTTCTATTCTTTGACATT 58.630 29.630 0.59 0.00 0.00 2.71
2065 2380 8.992073 GGTTGCAATTTCTATTCTTTGACATTT 58.008 29.630 0.59 0.00 0.00 2.32
2102 2417 6.381481 TTCTGCATAAATCTGCCAACATAG 57.619 37.500 0.00 0.00 41.58 2.23
2118 2433 9.330063 TGCCAACATAGATCTTAACATTCTTAG 57.670 33.333 0.00 0.00 0.00 2.18
2150 2466 8.133627 AGCTTTATATATCAAGTTGCAAAGCAG 58.866 33.333 19.76 0.00 45.57 4.24
2175 2491 7.761249 AGCATATTTCTTGTTCCATTTTACTGC 59.239 33.333 0.00 0.00 0.00 4.40
2179 2495 3.826157 TCTTGTTCCATTTTACTGCCTGG 59.174 43.478 0.00 0.00 0.00 4.45
2180 2496 1.892474 TGTTCCATTTTACTGCCTGGC 59.108 47.619 12.87 12.87 0.00 4.85
2181 2497 2.171003 GTTCCATTTTACTGCCTGGCT 58.829 47.619 21.03 2.51 0.00 4.75
2182 2498 1.838112 TCCATTTTACTGCCTGGCTG 58.162 50.000 22.17 22.17 0.00 4.85
2183 2499 1.075374 TCCATTTTACTGCCTGGCTGT 59.925 47.619 29.91 29.91 42.86 4.40
2185 2501 2.094545 CCATTTTACTGCCTGGCTGTTC 60.095 50.000 31.70 0.00 40.85 3.18
2187 2503 2.584835 TTTACTGCCTGGCTGTTCAT 57.415 45.000 31.70 13.07 40.85 2.57
2188 2504 2.584835 TTACTGCCTGGCTGTTCATT 57.415 45.000 31.70 12.73 40.85 2.57
2190 2506 2.584835 ACTGCCTGGCTGTTCATTAA 57.415 45.000 23.51 0.00 37.43 1.40
2191 2507 2.875296 ACTGCCTGGCTGTTCATTAAA 58.125 42.857 23.51 0.00 37.43 1.52
2192 2508 2.558359 ACTGCCTGGCTGTTCATTAAAC 59.442 45.455 23.51 0.00 37.43 2.01
2193 2509 2.821969 CTGCCTGGCTGTTCATTAAACT 59.178 45.455 21.03 0.00 38.76 2.66
2194 2510 3.230134 TGCCTGGCTGTTCATTAAACTT 58.770 40.909 21.03 0.00 38.76 2.66
2233 2549 7.583860 TGACGAACGTTATTCAATCAACATA 57.416 32.000 0.00 0.00 0.00 2.29
2257 2573 5.051816 CAGTGCAAACATTGGTTCAAGATT 58.948 37.500 0.00 0.00 35.82 2.40
2447 2763 3.913799 TCTGTTATGGAGGGAAAGGTGAA 59.086 43.478 0.00 0.00 0.00 3.18
2906 3234 4.127171 TCACAGTTCCAGCTTACTTCAAC 58.873 43.478 0.00 0.00 0.00 3.18
3152 3545 6.093617 AGTACTCCCTCCGATCCATATTAT 57.906 41.667 0.00 0.00 0.00 1.28
3211 3604 5.069119 ACGTCTAGATACATCCATTTCAGCA 59.931 40.000 0.00 0.00 0.00 4.41
3224 3617 7.936496 TCCATTTCAGCAACAAGTAATATGA 57.064 32.000 0.00 0.00 0.00 2.15
3370 3775 8.915036 GGTGGAGAAGACTTTGATAATACTCTA 58.085 37.037 0.00 0.00 0.00 2.43
3493 3898 4.675190 AATTGAACTCTCATCAACTGCG 57.325 40.909 0.00 0.00 39.43 5.18
3688 4093 1.609072 GAGGTTCTTCTTGTTGGTGGC 59.391 52.381 0.00 0.00 0.00 5.01
3961 4366 6.543465 TCAGTGAATATGGCTTTATTGTGGAG 59.457 38.462 0.00 0.00 0.00 3.86
4057 4565 7.756614 AGGGTACTTTATCTTCTTTGGAAGTT 58.243 34.615 5.79 1.26 46.47 2.66
4225 4976 5.243981 ACCTGTTCATGTCTGATTCTTCTG 58.756 41.667 0.00 0.00 0.00 3.02
4437 5536 5.850557 TTGATATTGACGCCAATGGAATT 57.149 34.783 7.26 0.00 42.55 2.17
4757 5856 6.956497 AGAAGATAAAGAGCAAGATGGAAGT 58.044 36.000 0.00 0.00 0.00 3.01
4851 5950 2.231380 TGGTTCCCAGGAAGGAGGC 61.231 63.158 0.00 0.00 41.22 4.70
4918 6021 0.250901 GAAGAAGTGAAGCTGCCCCA 60.251 55.000 0.00 0.00 0.00 4.96
5118 6234 0.397941 TGGTTCTCTGCTTGGAGTGG 59.602 55.000 0.00 0.00 35.11 4.00
5164 6280 5.006261 TGCTCATCGGTATTATTTGTTCACG 59.994 40.000 0.00 0.00 0.00 4.35
5170 6286 4.093703 CGGTATTATTTGTTCACGCCTGAA 59.906 41.667 0.00 0.00 33.76 3.02
5209 6325 3.327172 AGCTGAGTAAGATGGCTATGCAT 59.673 43.478 3.79 3.79 0.00 3.96
5210 6326 4.070716 GCTGAGTAAGATGGCTATGCATT 58.929 43.478 3.54 0.00 0.00 3.56
5212 6328 5.334724 GCTGAGTAAGATGGCTATGCATTTC 60.335 44.000 3.54 0.00 0.00 2.17
5213 6329 5.933617 TGAGTAAGATGGCTATGCATTTCT 58.066 37.500 3.54 0.00 0.00 2.52
5214 6330 5.761726 TGAGTAAGATGGCTATGCATTTCTG 59.238 40.000 3.54 0.00 0.00 3.02
5215 6331 5.688807 AGTAAGATGGCTATGCATTTCTGT 58.311 37.500 3.54 0.00 0.00 3.41
5216 6332 5.762218 AGTAAGATGGCTATGCATTTCTGTC 59.238 40.000 3.54 0.00 0.00 3.51
5217 6333 3.136763 AGATGGCTATGCATTTCTGTCG 58.863 45.455 3.54 0.00 0.00 4.35
5219 6335 0.308993 GGCTATGCATTTCTGTCGGC 59.691 55.000 3.54 0.00 0.00 5.54
5220 6336 0.308993 GCTATGCATTTCTGTCGGCC 59.691 55.000 3.54 0.00 0.00 6.13
5221 6337 0.583438 CTATGCATTTCTGTCGGCCG 59.417 55.000 22.12 22.12 0.00 6.13
5222 6338 0.813610 TATGCATTTCTGTCGGCCGG 60.814 55.000 27.83 9.82 0.00 6.13
5223 6339 2.746277 GCATTTCTGTCGGCCGGT 60.746 61.111 27.83 0.00 0.00 5.28
5224 6340 3.039202 GCATTTCTGTCGGCCGGTG 62.039 63.158 27.83 15.65 0.00 4.94
5225 6341 1.671054 CATTTCTGTCGGCCGGTGT 60.671 57.895 27.83 1.54 0.00 4.16
5226 6342 1.375523 ATTTCTGTCGGCCGGTGTC 60.376 57.895 27.83 13.92 0.00 3.67
5227 6343 2.107041 ATTTCTGTCGGCCGGTGTCA 62.107 55.000 27.83 17.65 0.00 3.58
5228 6344 2.313051 TTTCTGTCGGCCGGTGTCAA 62.313 55.000 27.83 10.61 0.00 3.18
5229 6345 2.981977 TTCTGTCGGCCGGTGTCAAC 62.982 60.000 27.83 15.70 0.00 3.18
5230 6346 3.800685 CTGTCGGCCGGTGTCAACA 62.801 63.158 27.83 19.70 0.00 3.33
5231 6347 3.343421 GTCGGCCGGTGTCAACAC 61.343 66.667 27.83 9.72 45.72 3.32
5242 6358 2.750948 GTGTCAACACCGAGTACATGT 58.249 47.619 2.69 2.69 40.85 3.21
5243 6359 2.729882 GTGTCAACACCGAGTACATGTC 59.270 50.000 0.00 0.00 40.85 3.06
5244 6360 2.362717 TGTCAACACCGAGTACATGTCA 59.637 45.455 0.00 0.00 0.00 3.58
5245 6361 2.987149 GTCAACACCGAGTACATGTCAG 59.013 50.000 0.00 0.00 0.00 3.51
5246 6362 2.029380 TCAACACCGAGTACATGTCAGG 60.029 50.000 0.00 4.39 0.00 3.86
5247 6363 1.629043 ACACCGAGTACATGTCAGGT 58.371 50.000 0.00 5.09 0.00 4.00
5248 6364 1.996292 CACCGAGTACATGTCAGGTG 58.004 55.000 20.08 20.08 42.31 4.00
5249 6365 0.246635 ACCGAGTACATGTCAGGTGC 59.753 55.000 0.00 0.00 0.00 5.01
5250 6366 0.246360 CCGAGTACATGTCAGGTGCA 59.754 55.000 0.00 0.00 0.00 4.57
5251 6367 1.633561 CGAGTACATGTCAGGTGCAG 58.366 55.000 0.00 0.00 0.00 4.41
5252 6368 1.067565 CGAGTACATGTCAGGTGCAGT 60.068 52.381 0.00 0.00 0.00 4.40
5253 6369 2.610479 CGAGTACATGTCAGGTGCAGTT 60.610 50.000 0.00 0.00 0.00 3.16
5254 6370 3.403038 GAGTACATGTCAGGTGCAGTTT 58.597 45.455 0.00 0.00 0.00 2.66
5255 6371 3.815401 GAGTACATGTCAGGTGCAGTTTT 59.185 43.478 0.00 0.00 0.00 2.43
5256 6372 4.968259 AGTACATGTCAGGTGCAGTTTTA 58.032 39.130 0.00 0.00 0.00 1.52
5257 6373 4.997395 AGTACATGTCAGGTGCAGTTTTAG 59.003 41.667 0.00 0.00 0.00 1.85
5258 6374 3.149196 ACATGTCAGGTGCAGTTTTAGG 58.851 45.455 0.00 0.00 0.00 2.69
5259 6375 3.149196 CATGTCAGGTGCAGTTTTAGGT 58.851 45.455 0.00 0.00 0.00 3.08
5260 6376 3.290948 TGTCAGGTGCAGTTTTAGGTT 57.709 42.857 0.00 0.00 0.00 3.50
5261 6377 3.211045 TGTCAGGTGCAGTTTTAGGTTC 58.789 45.455 0.00 0.00 0.00 3.62
5262 6378 3.118038 TGTCAGGTGCAGTTTTAGGTTCT 60.118 43.478 0.00 0.00 0.00 3.01
5263 6379 4.101898 TGTCAGGTGCAGTTTTAGGTTCTA 59.898 41.667 0.00 0.00 0.00 2.10
5264 6380 5.061179 GTCAGGTGCAGTTTTAGGTTCTAA 58.939 41.667 0.00 0.00 0.00 2.10
5265 6381 5.705905 GTCAGGTGCAGTTTTAGGTTCTAAT 59.294 40.000 0.00 0.00 0.00 1.73
5266 6382 5.705441 TCAGGTGCAGTTTTAGGTTCTAATG 59.295 40.000 0.00 0.00 0.00 1.90
5267 6383 5.473504 CAGGTGCAGTTTTAGGTTCTAATGT 59.526 40.000 0.00 0.00 0.00 2.71
5268 6384 6.653320 CAGGTGCAGTTTTAGGTTCTAATGTA 59.347 38.462 0.00 0.00 0.00 2.29
5269 6385 6.879458 AGGTGCAGTTTTAGGTTCTAATGTAG 59.121 38.462 0.00 0.00 0.00 2.74
5270 6386 6.877322 GGTGCAGTTTTAGGTTCTAATGTAGA 59.123 38.462 0.00 0.00 0.00 2.59
5271 6387 7.389607 GGTGCAGTTTTAGGTTCTAATGTAGAA 59.610 37.037 0.00 0.00 42.19 2.10
5318 6434 2.916716 GGATGTAGTTTTTCGCGTCGTA 59.083 45.455 5.77 0.00 0.00 3.43
5320 6436 4.032104 GGATGTAGTTTTTCGCGTCGTATT 59.968 41.667 5.77 0.00 0.00 1.89
5372 6488 0.980231 CCTTGAGCTGGCTAGGAGGT 60.980 60.000 5.69 0.00 0.00 3.85
5418 6534 4.744570 TCTCACGACTAGTTAATTGCTGG 58.255 43.478 0.00 0.00 0.00 4.85
5559 6699 5.686841 ACAAACATGTTCAATCACGTTCATG 59.313 36.000 12.39 4.11 38.65 3.07
5565 6705 5.937187 TGTTCAATCACGTTCATGTATTGG 58.063 37.500 0.00 0.00 0.00 3.16
5568 6708 5.729510 TCAATCACGTTCATGTATTGGAGA 58.270 37.500 0.00 0.00 0.00 3.71
5579 6719 5.766670 TCATGTATTGGAGATCATTGCTTCC 59.233 40.000 0.00 0.00 0.00 3.46
5580 6720 4.129380 TGTATTGGAGATCATTGCTTCCG 58.871 43.478 0.00 0.00 0.00 4.30
5594 6734 2.301870 TGCTTCCGGGATAGCGATATTT 59.698 45.455 19.33 0.00 40.26 1.40
5595 6735 2.930682 GCTTCCGGGATAGCGATATTTC 59.069 50.000 0.00 0.00 0.00 2.17
5619 6759 2.124983 ATGTGTAGCTGCTGGGCG 60.125 61.111 13.43 0.00 37.29 6.13
5639 6779 3.437049 GCGATTATAATTCCTGCTCACCC 59.563 47.826 0.00 0.00 0.00 4.61
5642 6782 4.974645 TTATAATTCCTGCTCACCCGAT 57.025 40.909 0.00 0.00 0.00 4.18
5643 6783 2.910688 TAATTCCTGCTCACCCGATC 57.089 50.000 0.00 0.00 0.00 3.69
5644 6784 0.911769 AATTCCTGCTCACCCGATCA 59.088 50.000 0.00 0.00 0.00 2.92
5645 6785 0.179000 ATTCCTGCTCACCCGATCAC 59.821 55.000 0.00 0.00 0.00 3.06
5657 6797 1.344763 CCCGATCACCCCTTCACTATC 59.655 57.143 0.00 0.00 0.00 2.08
5669 6810 5.509498 CCCTTCACTATCTTGAATGGGAAA 58.491 41.667 11.81 0.00 41.66 3.13
5678 6819 5.726980 TCTTGAATGGGAAATTGACCAAG 57.273 39.130 5.56 0.00 40.73 3.61
5679 6820 3.959535 TGAATGGGAAATTGACCAAGC 57.040 42.857 5.56 2.48 40.73 4.01
5680 6821 2.566724 TGAATGGGAAATTGACCAAGCC 59.433 45.455 5.56 0.00 40.73 4.35
5681 6822 1.185315 ATGGGAAATTGACCAAGCCG 58.815 50.000 5.56 0.00 40.73 5.52
5682 6823 0.178975 TGGGAAATTGACCAAGCCGT 60.179 50.000 0.00 0.00 32.89 5.68
5684 6825 0.526211 GGAAATTGACCAAGCCGTCC 59.474 55.000 0.00 0.00 31.35 4.79
5686 6827 1.611491 GAAATTGACCAAGCCGTCCAA 59.389 47.619 0.00 0.00 31.35 3.53
5687 6828 1.247567 AATTGACCAAGCCGTCCAAG 58.752 50.000 0.00 0.00 31.35 3.61
5688 6829 0.110486 ATTGACCAAGCCGTCCAAGT 59.890 50.000 0.00 0.00 31.35 3.16
5689 6830 0.759959 TTGACCAAGCCGTCCAAGTA 59.240 50.000 0.00 0.00 31.35 2.24
5690 6831 0.320374 TGACCAAGCCGTCCAAGTAG 59.680 55.000 0.00 0.00 31.35 2.57
5691 6832 0.391263 GACCAAGCCGTCCAAGTAGG 60.391 60.000 0.00 0.00 39.47 3.18
5692 6833 1.125711 ACCAAGCCGTCCAAGTAGGT 61.126 55.000 0.00 0.00 39.02 3.08
5693 6834 0.673644 CCAAGCCGTCCAAGTAGGTG 60.674 60.000 0.00 0.00 39.02 4.00
5694 6835 0.320374 CAAGCCGTCCAAGTAGGTGA 59.680 55.000 0.00 0.00 39.02 4.02
5695 6836 1.066143 CAAGCCGTCCAAGTAGGTGAT 60.066 52.381 0.00 0.00 39.02 3.06
5696 6837 1.276622 AGCCGTCCAAGTAGGTGATT 58.723 50.000 0.00 0.00 39.02 2.57
5697 6838 1.628846 AGCCGTCCAAGTAGGTGATTT 59.371 47.619 0.00 0.00 39.02 2.17
5698 6839 2.835764 AGCCGTCCAAGTAGGTGATTTA 59.164 45.455 0.00 0.00 39.02 1.40
5699 6840 2.934553 GCCGTCCAAGTAGGTGATTTAC 59.065 50.000 0.00 0.00 39.02 2.01
5792 6933 9.683069 ACAAGCAAACATTATTTTCTCTAAGTG 57.317 29.630 0.00 0.00 0.00 3.16
5793 6934 8.642020 CAAGCAAACATTATTTTCTCTAAGTGC 58.358 33.333 0.00 0.00 0.00 4.40
5794 6935 7.885297 AGCAAACATTATTTTCTCTAAGTGCA 58.115 30.769 0.00 0.00 0.00 4.57
5795 6936 7.809806 AGCAAACATTATTTTCTCTAAGTGCAC 59.190 33.333 9.40 9.40 0.00 4.57
5796 6937 7.062255 GCAAACATTATTTTCTCTAAGTGCACC 59.938 37.037 14.63 0.00 0.00 5.01
5797 6938 6.759497 ACATTATTTTCTCTAAGTGCACCC 57.241 37.500 14.63 0.00 0.00 4.61
5798 6939 5.652452 ACATTATTTTCTCTAAGTGCACCCC 59.348 40.000 14.63 0.00 0.00 4.95
5799 6940 2.178912 TTTTCTCTAAGTGCACCCCG 57.821 50.000 14.63 1.52 0.00 5.73
5800 6941 1.053424 TTTCTCTAAGTGCACCCCGT 58.947 50.000 14.63 0.00 0.00 5.28
5801 6942 0.606604 TTCTCTAAGTGCACCCCGTC 59.393 55.000 14.63 0.00 0.00 4.79
5802 6943 0.251653 TCTCTAAGTGCACCCCGTCT 60.252 55.000 14.63 0.00 0.00 4.18
5803 6944 1.005097 TCTCTAAGTGCACCCCGTCTA 59.995 52.381 14.63 0.00 0.00 2.59
5804 6945 1.822990 CTCTAAGTGCACCCCGTCTAA 59.177 52.381 14.63 0.00 0.00 2.10
5805 6946 1.547372 TCTAAGTGCACCCCGTCTAAC 59.453 52.381 14.63 0.00 0.00 2.34
5806 6947 0.244450 TAAGTGCACCCCGTCTAACG 59.756 55.000 14.63 0.00 42.11 3.18
5807 6948 1.751349 AAGTGCACCCCGTCTAACGT 61.751 55.000 14.63 0.00 40.58 3.99
5808 6949 0.895100 AGTGCACCCCGTCTAACGTA 60.895 55.000 14.63 0.00 40.58 3.57
5809 6950 0.733909 GTGCACCCCGTCTAACGTAC 60.734 60.000 5.22 0.00 40.58 3.67
5810 6951 1.177895 TGCACCCCGTCTAACGTACA 61.178 55.000 0.00 0.00 40.58 2.90
5811 6952 0.733909 GCACCCCGTCTAACGTACAC 60.734 60.000 0.00 0.00 40.58 2.90
5812 6953 0.597568 CACCCCGTCTAACGTACACA 59.402 55.000 0.00 0.00 40.58 3.72
5813 6954 0.598065 ACCCCGTCTAACGTACACAC 59.402 55.000 0.00 0.00 40.58 3.82
5814 6955 0.597568 CCCCGTCTAACGTACACACA 59.402 55.000 0.00 0.00 40.58 3.72
5815 6956 1.000385 CCCCGTCTAACGTACACACAA 60.000 52.381 0.00 0.00 40.58 3.33
5816 6957 2.053627 CCCGTCTAACGTACACACAAC 58.946 52.381 0.00 0.00 40.58 3.32
5817 6958 2.543445 CCCGTCTAACGTACACACAACA 60.543 50.000 0.00 0.00 40.58 3.33
5818 6959 3.114809 CCGTCTAACGTACACACAACAA 58.885 45.455 0.00 0.00 40.58 2.83
5819 6960 3.061006 CCGTCTAACGTACACACAACAAC 60.061 47.826 0.00 0.00 40.58 3.32
5820 6961 3.547068 CGTCTAACGTACACACAACAACA 59.453 43.478 0.00 0.00 36.74 3.33
5821 6962 4.546833 CGTCTAACGTACACACAACAACAC 60.547 45.833 0.00 0.00 36.74 3.32
5822 6963 3.864583 TCTAACGTACACACAACAACACC 59.135 43.478 0.00 0.00 0.00 4.16
5823 6964 2.096220 ACGTACACACAACAACACCA 57.904 45.000 0.00 0.00 0.00 4.17
5824 6965 2.424557 ACGTACACACAACAACACCAA 58.575 42.857 0.00 0.00 0.00 3.67
5825 6966 2.417239 ACGTACACACAACAACACCAAG 59.583 45.455 0.00 0.00 0.00 3.61
5826 6967 2.417239 CGTACACACAACAACACCAAGT 59.583 45.455 0.00 0.00 0.00 3.16
5827 6968 3.617706 CGTACACACAACAACACCAAGTA 59.382 43.478 0.00 0.00 0.00 2.24
5828 6969 4.093115 CGTACACACAACAACACCAAGTAA 59.907 41.667 0.00 0.00 0.00 2.24
5829 6970 5.220700 CGTACACACAACAACACCAAGTAAT 60.221 40.000 0.00 0.00 0.00 1.89
5830 6971 5.243426 ACACACAACAACACCAAGTAATC 57.757 39.130 0.00 0.00 0.00 1.75
5831 6972 4.702612 ACACACAACAACACCAAGTAATCA 59.297 37.500 0.00 0.00 0.00 2.57
5832 6973 5.034152 CACACAACAACACCAAGTAATCAC 58.966 41.667 0.00 0.00 0.00 3.06
5833 6974 4.702612 ACACAACAACACCAAGTAATCACA 59.297 37.500 0.00 0.00 0.00 3.58
5834 6975 5.163663 ACACAACAACACCAAGTAATCACAG 60.164 40.000 0.00 0.00 0.00 3.66
5835 6976 4.202010 ACAACAACACCAAGTAATCACAGC 60.202 41.667 0.00 0.00 0.00 4.40
5836 6977 2.884639 ACAACACCAAGTAATCACAGCC 59.115 45.455 0.00 0.00 0.00 4.85
5837 6978 3.149196 CAACACCAAGTAATCACAGCCT 58.851 45.455 0.00 0.00 0.00 4.58
5838 6979 3.059352 ACACCAAGTAATCACAGCCTC 57.941 47.619 0.00 0.00 0.00 4.70
5839 6980 2.371841 ACACCAAGTAATCACAGCCTCA 59.628 45.455 0.00 0.00 0.00 3.86
5840 6981 2.744202 CACCAAGTAATCACAGCCTCAC 59.256 50.000 0.00 0.00 0.00 3.51
5841 6982 2.002586 CCAAGTAATCACAGCCTCACG 58.997 52.381 0.00 0.00 0.00 4.35
5842 6983 2.353704 CCAAGTAATCACAGCCTCACGA 60.354 50.000 0.00 0.00 0.00 4.35
5843 6984 3.525537 CAAGTAATCACAGCCTCACGAT 58.474 45.455 0.00 0.00 0.00 3.73
5844 6985 3.895232 AGTAATCACAGCCTCACGATT 57.105 42.857 0.00 0.00 32.97 3.34
5845 6986 5.109210 CAAGTAATCACAGCCTCACGATTA 58.891 41.667 0.00 0.00 30.94 1.75
5846 6987 4.938080 AGTAATCACAGCCTCACGATTAG 58.062 43.478 0.00 0.00 32.51 1.73
5847 6988 2.898729 ATCACAGCCTCACGATTAGG 57.101 50.000 0.00 0.00 37.17 2.69
5859 7000 5.927115 CCTCACGATTAGGCTAACTTATTCC 59.073 44.000 9.55 0.00 0.00 3.01
5860 7001 6.462487 CCTCACGATTAGGCTAACTTATTCCA 60.462 42.308 9.55 0.00 0.00 3.53
5861 7002 6.880484 TCACGATTAGGCTAACTTATTCCAA 58.120 36.000 9.55 0.00 0.00 3.53
5862 7003 7.506114 TCACGATTAGGCTAACTTATTCCAAT 58.494 34.615 9.55 0.00 0.00 3.16
5863 7004 7.656137 TCACGATTAGGCTAACTTATTCCAATC 59.344 37.037 9.55 0.00 0.00 2.67
5864 7005 7.657761 CACGATTAGGCTAACTTATTCCAATCT 59.342 37.037 9.55 0.00 0.00 2.40
5865 7006 8.867097 ACGATTAGGCTAACTTATTCCAATCTA 58.133 33.333 9.55 0.00 0.00 1.98
5866 7007 9.706691 CGATTAGGCTAACTTATTCCAATCTAA 57.293 33.333 9.55 0.00 0.00 2.10
5868 7009 9.794719 ATTAGGCTAACTTATTCCAATCTAACC 57.205 33.333 9.55 0.00 0.00 2.85
5869 7010 6.289064 AGGCTAACTTATTCCAATCTAACCG 58.711 40.000 0.00 0.00 0.00 4.44
5870 7011 6.053650 GGCTAACTTATTCCAATCTAACCGT 58.946 40.000 0.00 0.00 0.00 4.83
5871 7012 6.202379 GGCTAACTTATTCCAATCTAACCGTC 59.798 42.308 0.00 0.00 0.00 4.79
5872 7013 6.759827 GCTAACTTATTCCAATCTAACCGTCA 59.240 38.462 0.00 0.00 0.00 4.35
5873 7014 7.279313 GCTAACTTATTCCAATCTAACCGTCAA 59.721 37.037 0.00 0.00 0.00 3.18
5874 7015 7.989416 AACTTATTCCAATCTAACCGTCAAA 57.011 32.000 0.00 0.00 0.00 2.69
5875 7016 7.373778 ACTTATTCCAATCTAACCGTCAAAC 57.626 36.000 0.00 0.00 0.00 2.93
5876 7017 6.938030 ACTTATTCCAATCTAACCGTCAAACA 59.062 34.615 0.00 0.00 0.00 2.83
5877 7018 7.446013 ACTTATTCCAATCTAACCGTCAAACAA 59.554 33.333 0.00 0.00 0.00 2.83
5878 7019 5.427036 TTCCAATCTAACCGTCAAACAAC 57.573 39.130 0.00 0.00 0.00 3.32
5879 7020 4.452825 TCCAATCTAACCGTCAAACAACA 58.547 39.130 0.00 0.00 0.00 3.33
5880 7021 4.882427 TCCAATCTAACCGTCAAACAACAA 59.118 37.500 0.00 0.00 0.00 2.83
5881 7022 4.973663 CCAATCTAACCGTCAAACAACAAC 59.026 41.667 0.00 0.00 0.00 3.32
5882 7023 5.220970 CCAATCTAACCGTCAAACAACAACT 60.221 40.000 0.00 0.00 0.00 3.16
5883 7024 6.017770 CCAATCTAACCGTCAAACAACAACTA 60.018 38.462 0.00 0.00 0.00 2.24
5884 7025 7.411274 CAATCTAACCGTCAAACAACAACTAA 58.589 34.615 0.00 0.00 0.00 2.24
5885 7026 6.981762 TCTAACCGTCAAACAACAACTAAA 57.018 33.333 0.00 0.00 0.00 1.85
5886 7027 7.556733 TCTAACCGTCAAACAACAACTAAAT 57.443 32.000 0.00 0.00 0.00 1.40
5887 7028 8.659925 TCTAACCGTCAAACAACAACTAAATA 57.340 30.769 0.00 0.00 0.00 1.40
5888 7029 9.275398 TCTAACCGTCAAACAACAACTAAATAT 57.725 29.630 0.00 0.00 0.00 1.28
5889 7030 9.537848 CTAACCGTCAAACAACAACTAAATATC 57.462 33.333 0.00 0.00 0.00 1.63
5890 7031 6.905578 ACCGTCAAACAACAACTAAATATCC 58.094 36.000 0.00 0.00 0.00 2.59
5891 7032 6.072342 ACCGTCAAACAACAACTAAATATCCC 60.072 38.462 0.00 0.00 0.00 3.85
5892 7033 6.072397 CCGTCAAACAACAACTAAATATCCCA 60.072 38.462 0.00 0.00 0.00 4.37
5893 7034 7.364200 CGTCAAACAACAACTAAATATCCCAA 58.636 34.615 0.00 0.00 0.00 4.12
5894 7035 7.863375 CGTCAAACAACAACTAAATATCCCAAA 59.137 33.333 0.00 0.00 0.00 3.28
5895 7036 9.535878 GTCAAACAACAACTAAATATCCCAAAA 57.464 29.630 0.00 0.00 0.00 2.44
5901 7042 9.337091 CAACAACTAAATATCCCAAAAAGTACG 57.663 33.333 0.00 0.00 0.00 3.67
5902 7043 8.625786 ACAACTAAATATCCCAAAAAGTACGT 57.374 30.769 0.00 0.00 0.00 3.57
5903 7044 9.070179 ACAACTAAATATCCCAAAAAGTACGTT 57.930 29.630 0.00 0.00 0.00 3.99
5904 7045 9.902196 CAACTAAATATCCCAAAAAGTACGTTT 57.098 29.630 0.54 0.54 0.00 3.60
5907 7048 9.712359 CTAAATATCCCAAAAAGTACGTTTAGC 57.288 33.333 7.22 0.00 0.00 3.09
5908 7049 7.690952 AATATCCCAAAAAGTACGTTTAGCA 57.309 32.000 7.22 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 103 5.902613 TCCTCACCTCATTTGCAAAATAG 57.097 39.130 17.19 15.39 0.00 1.73
105 107 3.760151 CTCATCCTCACCTCATTTGCAAA 59.240 43.478 15.44 15.44 0.00 3.68
106 108 3.349927 CTCATCCTCACCTCATTTGCAA 58.650 45.455 0.00 0.00 0.00 4.08
124 126 3.071206 GTCTCGGCTGCCTCCTCA 61.071 66.667 17.92 0.00 0.00 3.86
173 175 1.949847 CTACCCACTCACTCTGCCCG 61.950 65.000 0.00 0.00 0.00 6.13
177 179 1.273606 CACACCTACCCACTCACTCTG 59.726 57.143 0.00 0.00 0.00 3.35
179 181 0.608640 CCACACCTACCCACTCACTC 59.391 60.000 0.00 0.00 0.00 3.51
325 342 6.428771 ACGGTGCGCCATTAGTATATATTTTT 59.571 34.615 18.18 0.00 34.09 1.94
326 343 5.935789 ACGGTGCGCCATTAGTATATATTTT 59.064 36.000 18.18 0.00 34.09 1.82
327 344 5.484715 ACGGTGCGCCATTAGTATATATTT 58.515 37.500 18.18 0.00 34.09 1.40
328 345 5.080969 ACGGTGCGCCATTAGTATATATT 57.919 39.130 18.18 0.00 34.09 1.28
329 346 4.730949 ACGGTGCGCCATTAGTATATAT 57.269 40.909 18.18 0.00 34.09 0.86
330 347 4.239304 CAACGGTGCGCCATTAGTATATA 58.761 43.478 18.18 0.00 34.09 0.86
331 348 3.064207 CAACGGTGCGCCATTAGTATAT 58.936 45.455 18.18 0.00 34.09 0.86
332 349 2.475818 CAACGGTGCGCCATTAGTATA 58.524 47.619 18.18 0.00 34.09 1.47
333 350 1.295792 CAACGGTGCGCCATTAGTAT 58.704 50.000 18.18 0.00 34.09 2.12
334 351 1.363145 GCAACGGTGCGCCATTAGTA 61.363 55.000 10.98 0.00 41.93 1.82
335 352 2.686816 GCAACGGTGCGCCATTAGT 61.687 57.895 10.98 2.53 41.93 2.24
336 353 2.100216 GCAACGGTGCGCCATTAG 59.900 61.111 10.98 1.79 41.93 1.73
360 377 4.515191 CCACATAGTGCGCCATTACTAATT 59.485 41.667 4.18 0.00 33.52 1.40
361 436 4.065088 CCACATAGTGCGCCATTACTAAT 58.935 43.478 4.18 0.00 33.52 1.73
362 437 3.462982 CCACATAGTGCGCCATTACTAA 58.537 45.455 4.18 0.00 33.52 2.24
368 443 1.820906 CAGCCACATAGTGCGCCAT 60.821 57.895 4.18 0.00 32.82 4.40
381 456 1.959710 TACTAATGACCCACCAGCCA 58.040 50.000 0.00 0.00 0.00 4.75
419 539 3.878103 TGCGCCACTAGTAACAAAAGAAA 59.122 39.130 4.18 0.00 0.00 2.52
422 542 2.095919 GGTGCGCCACTAGTAACAAAAG 60.096 50.000 12.58 0.00 34.40 2.27
471 593 1.647545 CTGGTGCGCCATTAGTGTGG 61.648 60.000 21.54 0.85 45.05 4.17
551 673 6.071320 GGAAAAGGGCTATAGATGAAATGGT 58.929 40.000 3.21 0.00 0.00 3.55
659 782 7.619964 TTAGAGAAGACAAAAGACCGTTTTT 57.380 32.000 0.00 0.00 0.00 1.94
660 783 7.619964 TTTAGAGAAGACAAAAGACCGTTTT 57.380 32.000 0.00 0.00 0.00 2.43
661 784 7.803279 ATTTAGAGAAGACAAAAGACCGTTT 57.197 32.000 0.00 0.00 0.00 3.60
662 785 8.771766 GTTATTTAGAGAAGACAAAAGACCGTT 58.228 33.333 0.00 0.00 0.00 4.44
663 786 7.929785 TGTTATTTAGAGAAGACAAAAGACCGT 59.070 33.333 0.00 0.00 0.00 4.83
664 787 8.306680 TGTTATTTAGAGAAGACAAAAGACCG 57.693 34.615 0.00 0.00 0.00 4.79
688 811 4.531854 TGGTGGTGGTTATACATTCCATG 58.468 43.478 0.00 0.00 33.68 3.66
715 838 7.038799 GCCAATGGATTTCCTTATACATTCCAT 60.039 37.037 2.05 0.00 42.70 3.41
716 839 6.267471 GCCAATGGATTTCCTTATACATTCCA 59.733 38.462 2.05 0.00 37.03 3.53
717 840 6.267471 TGCCAATGGATTTCCTTATACATTCC 59.733 38.462 2.05 0.00 37.03 3.01
718 841 7.288810 TGCCAATGGATTTCCTTATACATTC 57.711 36.000 2.05 0.00 37.03 2.67
720 843 8.974238 CATATGCCAATGGATTTCCTTATACAT 58.026 33.333 2.05 0.00 36.82 2.29
721 844 8.352137 CATATGCCAATGGATTTCCTTATACA 57.648 34.615 2.05 0.00 36.82 2.29
780 909 1.683385 GCCCAAGAATGATTAGCCACC 59.317 52.381 0.00 0.00 0.00 4.61
811 940 6.658188 TTTTCCATTTATTCCGGTCACTTT 57.342 33.333 0.00 0.00 0.00 2.66
834 963 3.386932 TGGAAAGATGGGCTAGCAATT 57.613 42.857 18.24 0.00 0.00 2.32
835 964 3.386932 TTGGAAAGATGGGCTAGCAAT 57.613 42.857 18.24 9.56 0.00 3.56
888 1017 5.923684 GGAGTCTAATTATTGAAGAGGAGCG 59.076 44.000 0.00 0.00 0.00 5.03
920 1049 1.369625 GCGTGTATTCTGGGTTCTGG 58.630 55.000 0.00 0.00 0.00 3.86
1084 1214 1.391577 GGAAGGTAGGACGAGACTCC 58.608 60.000 0.00 0.00 0.00 3.85
1154 1284 2.762875 GTACTGGGGTCGGAGGGG 60.763 72.222 0.00 0.00 0.00 4.79
1182 1312 3.127352 GACGGAGGCCAGACTAGCG 62.127 68.421 5.01 0.00 0.00 4.26
1183 1313 2.787567 GGACGGAGGCCAGACTAGC 61.788 68.421 5.01 0.00 0.00 3.42
1242 1372 1.529152 ATTCGGTTGGGTTTTCCGGC 61.529 55.000 0.00 0.00 43.75 6.13
1276 1407 1.745489 CCGAGTTAACCTGCAGGCC 60.745 63.158 33.06 17.49 39.32 5.19
1332 1463 2.284112 TACCCCGGCTCGGTTTCT 60.284 61.111 6.17 0.00 46.80 2.52
1345 1476 2.598686 GGTGAGAATTCCGACTACCC 57.401 55.000 0.65 0.00 0.00 3.69
1416 1547 5.776208 TGCCCGTATATCACTATTGTAGGAA 59.224 40.000 0.00 0.00 0.00 3.36
1423 1554 4.755123 GCAAAGTGCCCGTATATCACTATT 59.245 41.667 0.00 0.00 39.86 1.73
1453 1586 8.023706 CAGACAGCATAATATGTACGTACATCT 58.976 37.037 37.31 27.62 45.11 2.90
1460 1593 3.364920 CGCCAGACAGCATAATATGTACG 59.635 47.826 1.92 0.00 0.00 3.67
1476 1609 0.035534 TGCTAAGCCAAATCGCCAGA 60.036 50.000 0.00 0.00 0.00 3.86
1507 1640 3.959385 GCGCAAAAATAAAGCAACACAAC 59.041 39.130 0.30 0.00 0.00 3.32
1528 1661 6.254804 ACGTTTTCTTTCTTACAAAACCATGC 59.745 34.615 0.00 0.00 36.90 4.06
1531 1664 5.573669 GCACGTTTTCTTTCTTACAAAACCA 59.426 36.000 0.00 0.00 36.90 3.67
1534 1667 6.383415 ACAGCACGTTTTCTTTCTTACAAAA 58.617 32.000 0.00 0.00 0.00 2.44
1559 1692 0.327924 ACAATGGAACCGATCTGCCA 59.672 50.000 0.00 0.00 34.45 4.92
1574 1707 6.808212 CAGATCCGCTTATTGACAAAAACAAT 59.192 34.615 0.00 0.00 40.40 2.71
1592 1902 0.516001 GCATATGCAGCACAGATCCG 59.484 55.000 22.84 0.00 41.59 4.18
1637 1947 4.973168 TGAACTGCTACAACCTTGATCTT 58.027 39.130 0.00 0.00 0.00 2.40
1715 2025 4.619973 TGCAGAACATTCGCAGAAAAATT 58.380 34.783 6.93 0.00 45.90 1.82
1718 2028 3.004629 ACATGCAGAACATTCGCAGAAAA 59.995 39.130 13.63 0.00 45.90 2.29
1747 2057 6.659242 CACTGGGTGGAATAAACTAGATTGTT 59.341 38.462 0.00 0.00 0.00 2.83
1756 2066 2.351350 CGTTGCACTGGGTGGAATAAAC 60.351 50.000 7.76 0.00 44.75 2.01
1760 2070 2.268076 GCGTTGCACTGGGTGGAAT 61.268 57.895 7.76 0.00 44.75 3.01
1767 2077 3.663176 CCCACTGCGTTGCACTGG 61.663 66.667 9.62 9.62 40.50 4.00
1852 2163 8.712363 GCGTTATTTCAAGCTTAGATGATGATA 58.288 33.333 0.00 0.00 0.00 2.15
1863 2174 7.767261 TGGTATAATTGCGTTATTTCAAGCTT 58.233 30.769 0.00 0.00 34.82 3.74
1887 2198 5.470098 GGGGCAGTACATCATTACATAACTG 59.530 44.000 0.00 0.00 36.74 3.16
1894 2205 3.560636 ACTGGGGCAGTACATCATTAC 57.439 47.619 0.00 0.00 43.46 1.89
1902 2213 0.694196 TTGGGTAACTGGGGCAGTAC 59.306 55.000 0.00 0.00 44.62 2.73
1911 2222 3.190535 CGGGTTTCAGAATTGGGTAACTG 59.809 47.826 0.00 0.00 0.00 3.16
1932 2243 6.525121 TTGAGAATGTAACAGAACAAGACG 57.475 37.500 0.00 0.00 32.02 4.18
1934 2245 8.908786 AGAATTGAGAATGTAACAGAACAAGA 57.091 30.769 0.00 0.00 32.02 3.02
1984 2298 4.974399 ACTAGAAAAGGGACCAAAGACAG 58.026 43.478 0.00 0.00 0.00 3.51
2014 2329 5.469760 TGCATAAGATTAACACGGATGATGG 59.530 40.000 0.00 0.00 0.00 3.51
2015 2330 6.347969 CCTGCATAAGATTAACACGGATGATG 60.348 42.308 0.00 0.00 0.00 3.07
2022 2337 4.342772 GCAACCTGCATAAGATTAACACG 58.657 43.478 0.00 0.00 44.26 4.49
2058 2373 8.786898 GCAGAATAGGAGCATAAATAAATGTCA 58.213 33.333 0.00 0.00 0.00 3.58
2059 2374 8.786898 TGCAGAATAGGAGCATAAATAAATGTC 58.213 33.333 0.00 0.00 32.55 3.06
2060 2375 8.696043 TGCAGAATAGGAGCATAAATAAATGT 57.304 30.769 0.00 0.00 32.55 2.71
2069 2384 6.596888 GCAGATTTATGCAGAATAGGAGCATA 59.403 38.462 0.00 0.00 46.27 3.14
2071 2386 4.758674 GCAGATTTATGCAGAATAGGAGCA 59.241 41.667 0.00 0.00 45.77 4.26
2072 2387 5.294050 GCAGATTTATGCAGAATAGGAGC 57.706 43.478 0.00 0.00 45.77 4.70
2123 2439 9.119418 TGCTTTGCAACTTGATATATAAAGCTA 57.881 29.630 18.87 8.73 45.26 3.32
2136 2452 4.927425 AGAAATATGCTGCTTTGCAACTTG 59.073 37.500 0.00 0.00 46.61 3.16
2143 2459 5.472148 TGGAACAAGAAATATGCTGCTTTG 58.528 37.500 0.00 0.00 31.92 2.77
2175 2491 6.016276 ACAAGTAAGTTTAATGAACAGCCAGG 60.016 38.462 0.00 0.00 40.84 4.45
2179 2495 8.628882 AAACACAAGTAAGTTTAATGAACAGC 57.371 30.769 0.00 0.00 40.84 4.40
2180 2496 9.781834 TGAAACACAAGTAAGTTTAATGAACAG 57.218 29.630 0.00 0.00 40.84 3.16
2181 2497 9.781834 CTGAAACACAAGTAAGTTTAATGAACA 57.218 29.630 0.00 0.00 40.84 3.18
2182 2498 9.783256 ACTGAAACACAAGTAAGTTTAATGAAC 57.217 29.630 0.00 0.00 38.01 3.18
2185 2501 9.781834 TCAACTGAAACACAAGTAAGTTTAATG 57.218 29.630 0.00 0.00 38.01 1.90
2187 2503 7.958567 CGTCAACTGAAACACAAGTAAGTTTAA 59.041 33.333 0.00 0.00 38.01 1.52
2188 2504 7.331440 TCGTCAACTGAAACACAAGTAAGTTTA 59.669 33.333 0.00 0.00 38.01 2.01
2190 2506 5.640357 TCGTCAACTGAAACACAAGTAAGTT 59.360 36.000 0.00 0.00 30.57 2.66
2191 2507 5.172934 TCGTCAACTGAAACACAAGTAAGT 58.827 37.500 0.00 0.00 0.00 2.24
2192 2508 5.712217 TCGTCAACTGAAACACAAGTAAG 57.288 39.130 0.00 0.00 0.00 2.34
2193 2509 5.444877 CGTTCGTCAACTGAAACACAAGTAA 60.445 40.000 0.00 0.00 0.00 2.24
2194 2510 4.031991 CGTTCGTCAACTGAAACACAAGTA 59.968 41.667 0.00 0.00 0.00 2.24
2233 2549 3.446873 TCTTGAACCAATGTTTGCACTGT 59.553 39.130 0.00 0.00 33.97 3.55
2257 2573 0.767375 AGCTCTTGCAAGACTTCCCA 59.233 50.000 25.16 3.24 42.74 4.37
2447 2763 9.064706 CATTGCAGAAAGAATATAGAAGGTCAT 57.935 33.333 0.00 0.00 0.00 3.06
3152 3545 0.035317 ACATCTGCCTGAGCGACAAA 59.965 50.000 0.00 0.00 44.31 2.83
3286 3679 4.074259 AGCAACATAAGCAACACATCAGA 58.926 39.130 0.00 0.00 0.00 3.27
3370 3775 6.895756 TGTATTCACTGACTAGGTACTCCAAT 59.104 38.462 0.00 0.00 41.75 3.16
3493 3898 2.235898 AGGAAGGTTGATCTCAGTCTGC 59.764 50.000 0.00 0.00 0.00 4.26
4057 4565 3.517296 TCACAGGAAGCCACCATAAAA 57.483 42.857 0.00 0.00 0.00 1.52
4107 4615 8.255206 CACTATAATGAACAAGTAGGTACCACA 58.745 37.037 15.94 0.00 0.00 4.17
4195 4703 6.992063 ATCAGACATGAACAGGTAAATCAC 57.008 37.500 0.00 0.00 39.39 3.06
4225 4976 0.761802 CAGAATAGGAGGAGCCCCAC 59.238 60.000 0.00 0.00 37.37 4.61
4320 5419 0.392706 TGTCTGTTGCCATCTCACGT 59.607 50.000 0.00 0.00 0.00 4.49
4437 5536 0.249868 CCTTTGCAGAGACCGTCACA 60.250 55.000 5.68 0.00 0.00 3.58
4518 5617 1.764851 GCACCATCTTCTCGATCTCG 58.235 55.000 0.00 0.00 41.45 4.04
4918 6021 0.409484 AATAACTGGGTTGGGCTGCT 59.591 50.000 0.00 0.00 0.00 4.24
4928 6031 5.598830 TCCTCAAGACTAGCTAATAACTGGG 59.401 44.000 0.00 0.00 0.00 4.45
5118 6234 5.851177 GCATAATCACATAATACCAACGCAC 59.149 40.000 0.00 0.00 0.00 5.34
5164 6280 0.244721 GGTGCTTCCACATTTCAGGC 59.755 55.000 0.00 0.00 43.88 4.85
5170 6286 1.244019 GCTTCCGGTGCTTCCACATT 61.244 55.000 13.37 0.00 43.88 2.71
5209 6325 2.029964 GACACCGGCCGACAGAAA 59.970 61.111 30.73 0.00 0.00 2.52
5210 6326 2.798364 TTGACACCGGCCGACAGAA 61.798 57.895 30.73 9.67 0.00 3.02
5212 6328 3.041940 GTTGACACCGGCCGACAG 61.042 66.667 30.73 18.29 0.00 3.51
5213 6329 3.851128 TGTTGACACCGGCCGACA 61.851 61.111 30.73 19.47 0.00 4.35
5214 6330 3.343421 GTGTTGACACCGGCCGAC 61.343 66.667 30.73 16.68 40.85 4.79
5222 6338 2.729882 GACATGTACTCGGTGTTGACAC 59.270 50.000 0.00 5.72 45.72 3.67
5223 6339 2.362717 TGACATGTACTCGGTGTTGACA 59.637 45.455 0.00 0.00 0.00 3.58
5224 6340 2.987149 CTGACATGTACTCGGTGTTGAC 59.013 50.000 0.00 0.00 0.00 3.18
5225 6341 2.029380 CCTGACATGTACTCGGTGTTGA 60.029 50.000 0.00 0.00 0.00 3.18
5226 6342 2.288825 ACCTGACATGTACTCGGTGTTG 60.289 50.000 0.00 0.00 0.00 3.33
5227 6343 1.968493 ACCTGACATGTACTCGGTGTT 59.032 47.619 0.00 0.00 0.00 3.32
5228 6344 1.272490 CACCTGACATGTACTCGGTGT 59.728 52.381 19.37 5.47 37.66 4.16
5229 6345 1.996292 CACCTGACATGTACTCGGTG 58.004 55.000 16.16 16.16 36.36 4.94
5230 6346 0.246635 GCACCTGACATGTACTCGGT 59.753 55.000 0.00 0.00 0.00 4.69
5231 6347 0.246360 TGCACCTGACATGTACTCGG 59.754 55.000 0.00 0.00 0.00 4.63
5232 6348 1.067565 ACTGCACCTGACATGTACTCG 60.068 52.381 0.00 0.00 0.00 4.18
5233 6349 2.751166 ACTGCACCTGACATGTACTC 57.249 50.000 0.00 0.00 0.00 2.59
5234 6350 3.492102 AAACTGCACCTGACATGTACT 57.508 42.857 0.00 0.00 0.00 2.73
5235 6351 4.154195 CCTAAAACTGCACCTGACATGTAC 59.846 45.833 0.00 0.00 0.00 2.90
5236 6352 4.202419 ACCTAAAACTGCACCTGACATGTA 60.202 41.667 0.00 0.00 0.00 2.29
5237 6353 3.149196 CCTAAAACTGCACCTGACATGT 58.851 45.455 0.00 0.00 0.00 3.21
5238 6354 3.149196 ACCTAAAACTGCACCTGACATG 58.851 45.455 0.00 0.00 0.00 3.21
5239 6355 3.508845 ACCTAAAACTGCACCTGACAT 57.491 42.857 0.00 0.00 0.00 3.06
5240 6356 3.118038 AGAACCTAAAACTGCACCTGACA 60.118 43.478 0.00 0.00 0.00 3.58
5241 6357 3.477530 AGAACCTAAAACTGCACCTGAC 58.522 45.455 0.00 0.00 0.00 3.51
5242 6358 3.857157 AGAACCTAAAACTGCACCTGA 57.143 42.857 0.00 0.00 0.00 3.86
5243 6359 5.473504 ACATTAGAACCTAAAACTGCACCTG 59.526 40.000 0.00 0.00 0.00 4.00
5244 6360 5.631119 ACATTAGAACCTAAAACTGCACCT 58.369 37.500 0.00 0.00 0.00 4.00
5245 6361 5.959618 ACATTAGAACCTAAAACTGCACC 57.040 39.130 0.00 0.00 0.00 5.01
5246 6362 7.900782 TCTACATTAGAACCTAAAACTGCAC 57.099 36.000 0.00 0.00 0.00 4.57
5272 6388 9.980780 CCCAACTTGTTTAAACACTTAATTTTG 57.019 29.630 20.43 13.85 38.92 2.44
5273 6389 9.945904 TCCCAACTTGTTTAAACACTTAATTTT 57.054 25.926 20.43 3.99 38.92 1.82
5275 6391 9.541143 CATCCCAACTTGTTTAAACACTTAATT 57.459 29.630 20.43 7.95 38.92 1.40
5276 6392 8.700973 ACATCCCAACTTGTTTAAACACTTAAT 58.299 29.630 20.43 5.87 38.92 1.40
5277 6393 8.068892 ACATCCCAACTTGTTTAAACACTTAA 57.931 30.769 20.43 5.45 38.92 1.85
5278 6394 7.648039 ACATCCCAACTTGTTTAAACACTTA 57.352 32.000 20.43 5.82 38.92 2.24
5286 6402 7.419204 CGAAAAACTACATCCCAACTTGTTTA 58.581 34.615 0.00 0.00 0.00 2.01
5292 6408 2.482721 CGCGAAAAACTACATCCCAACT 59.517 45.455 0.00 0.00 0.00 3.16
5295 6411 2.070783 GACGCGAAAAACTACATCCCA 58.929 47.619 15.93 0.00 0.00 4.37
5346 6462 0.954452 AGCCAGCTCAAGGTTTTTCG 59.046 50.000 0.00 0.00 0.00 3.46
5372 6488 4.131596 CCTTCCGGTCTTGTTCTGTTAAA 58.868 43.478 0.00 0.00 0.00 1.52
5418 6534 5.934625 TCTTTCTAGAGTTTTGACTGCATCC 59.065 40.000 0.00 0.00 0.00 3.51
5520 6660 4.116747 TGTTTGTTAACTTGGGTGCAAG 57.883 40.909 7.22 0.00 38.11 4.01
5559 6699 3.499918 CCGGAAGCAATGATCTCCAATAC 59.500 47.826 0.00 0.00 0.00 1.89
5565 6705 2.557920 ATCCCGGAAGCAATGATCTC 57.442 50.000 0.73 0.00 0.00 2.75
5568 6708 1.609061 CGCTATCCCGGAAGCAATGAT 60.609 52.381 19.22 7.97 38.70 2.45
5579 6719 3.123621 GTGCAAGAAATATCGCTATCCCG 59.876 47.826 0.00 0.00 0.00 5.14
5580 6720 4.065088 TGTGCAAGAAATATCGCTATCCC 58.935 43.478 0.00 0.00 0.00 3.85
5594 6734 1.159285 GCAGCTACACATGTGCAAGA 58.841 50.000 25.68 7.86 35.91 3.02
5595 6735 1.135774 CAGCAGCTACACATGTGCAAG 60.136 52.381 25.68 22.15 38.44 4.01
5619 6759 4.894784 TCGGGTGAGCAGGAATTATAATC 58.105 43.478 0.00 0.00 0.00 1.75
5639 6779 3.384789 TCAAGATAGTGAAGGGGTGATCG 59.615 47.826 0.00 0.00 0.00 3.69
5642 6782 5.102953 CATTCAAGATAGTGAAGGGGTGA 57.897 43.478 0.00 0.00 40.72 4.02
5657 6797 4.248058 GCTTGGTCAATTTCCCATTCAAG 58.752 43.478 0.00 0.00 35.03 3.02
5669 6810 0.110486 ACTTGGACGGCTTGGTCAAT 59.890 50.000 0.00 0.00 38.70 2.57
5678 6819 2.109425 AAATCACCTACTTGGACGGC 57.891 50.000 0.00 0.00 39.71 5.68
5679 6820 3.528532 GGTAAATCACCTACTTGGACGG 58.471 50.000 0.00 0.00 44.79 4.79
5680 6821 3.119388 TCGGTAAATCACCTACTTGGACG 60.119 47.826 0.00 0.00 46.19 4.79
5681 6822 4.460948 TCGGTAAATCACCTACTTGGAC 57.539 45.455 0.00 0.00 46.19 4.02
5682 6823 4.081309 CCTTCGGTAAATCACCTACTTGGA 60.081 45.833 0.00 0.00 46.19 3.53
5684 6825 4.081309 TCCCTTCGGTAAATCACCTACTTG 60.081 45.833 0.00 0.00 46.19 3.16
5686 6827 3.716431 TCCCTTCGGTAAATCACCTACT 58.284 45.455 0.00 0.00 46.19 2.57
5687 6828 4.476628 TTCCCTTCGGTAAATCACCTAC 57.523 45.455 0.00 0.00 46.19 3.18
5688 6829 4.286549 TGTTTCCCTTCGGTAAATCACCTA 59.713 41.667 0.00 0.00 46.19 3.08
5689 6830 3.073356 TGTTTCCCTTCGGTAAATCACCT 59.927 43.478 0.00 0.00 46.19 4.00
5690 6831 3.414269 TGTTTCCCTTCGGTAAATCACC 58.586 45.455 0.00 0.00 44.75 4.02
5691 6832 4.070009 ACTGTTTCCCTTCGGTAAATCAC 58.930 43.478 0.00 0.00 0.00 3.06
5692 6833 4.360951 ACTGTTTCCCTTCGGTAAATCA 57.639 40.909 0.00 0.00 0.00 2.57
5693 6834 4.874396 CCTACTGTTTCCCTTCGGTAAATC 59.126 45.833 0.00 0.00 0.00 2.17
5694 6835 4.287845 ACCTACTGTTTCCCTTCGGTAAAT 59.712 41.667 0.00 0.00 0.00 1.40
5695 6836 3.647590 ACCTACTGTTTCCCTTCGGTAAA 59.352 43.478 0.00 0.00 0.00 2.01
5696 6837 3.007182 CACCTACTGTTTCCCTTCGGTAA 59.993 47.826 0.00 0.00 0.00 2.85
5697 6838 2.564062 CACCTACTGTTTCCCTTCGGTA 59.436 50.000 0.00 0.00 0.00 4.02
5698 6839 1.346722 CACCTACTGTTTCCCTTCGGT 59.653 52.381 0.00 0.00 0.00 4.69
5699 6840 1.621814 TCACCTACTGTTTCCCTTCGG 59.378 52.381 0.00 0.00 0.00 4.30
5700 6841 3.611766 ATCACCTACTGTTTCCCTTCG 57.388 47.619 0.00 0.00 0.00 3.79
5701 6842 5.646793 GGTAAATCACCTACTGTTTCCCTTC 59.353 44.000 0.00 0.00 44.79 3.46
5702 6843 5.567430 GGTAAATCACCTACTGTTTCCCTT 58.433 41.667 0.00 0.00 44.79 3.95
5703 6844 5.175388 GGTAAATCACCTACTGTTTCCCT 57.825 43.478 0.00 0.00 44.79 4.20
5766 6907 9.683069 CACTTAGAGAAAATAATGTTTGCTTGT 57.317 29.630 0.00 0.00 0.00 3.16
5767 6908 8.642020 GCACTTAGAGAAAATAATGTTTGCTTG 58.358 33.333 0.00 0.00 0.00 4.01
5768 6909 8.359642 TGCACTTAGAGAAAATAATGTTTGCTT 58.640 29.630 0.00 0.00 0.00 3.91
5769 6910 7.809806 GTGCACTTAGAGAAAATAATGTTTGCT 59.190 33.333 10.32 0.00 0.00 3.91
5770 6911 7.062255 GGTGCACTTAGAGAAAATAATGTTTGC 59.938 37.037 17.98 0.00 0.00 3.68
5771 6912 7.542130 GGGTGCACTTAGAGAAAATAATGTTTG 59.458 37.037 17.98 0.00 0.00 2.93
5772 6913 7.309805 GGGGTGCACTTAGAGAAAATAATGTTT 60.310 37.037 17.98 0.00 0.00 2.83
5773 6914 6.152831 GGGGTGCACTTAGAGAAAATAATGTT 59.847 38.462 17.98 0.00 0.00 2.71
5774 6915 5.652452 GGGGTGCACTTAGAGAAAATAATGT 59.348 40.000 17.98 0.00 0.00 2.71
5775 6916 5.220854 CGGGGTGCACTTAGAGAAAATAATG 60.221 44.000 17.98 0.00 0.00 1.90
5776 6917 4.881850 CGGGGTGCACTTAGAGAAAATAAT 59.118 41.667 17.98 0.00 0.00 1.28
5777 6918 4.258543 CGGGGTGCACTTAGAGAAAATAA 58.741 43.478 17.98 0.00 0.00 1.40
5778 6919 3.262405 ACGGGGTGCACTTAGAGAAAATA 59.738 43.478 17.98 0.00 0.00 1.40
5779 6920 2.039879 ACGGGGTGCACTTAGAGAAAAT 59.960 45.455 17.98 0.00 0.00 1.82
5780 6921 1.418637 ACGGGGTGCACTTAGAGAAAA 59.581 47.619 17.98 0.00 0.00 2.29
5781 6922 1.001633 GACGGGGTGCACTTAGAGAAA 59.998 52.381 17.98 0.00 0.00 2.52
5782 6923 0.606604 GACGGGGTGCACTTAGAGAA 59.393 55.000 17.98 0.00 0.00 2.87
5783 6924 0.251653 AGACGGGGTGCACTTAGAGA 60.252 55.000 17.98 0.00 0.00 3.10
5784 6925 1.471119 TAGACGGGGTGCACTTAGAG 58.529 55.000 17.98 6.78 0.00 2.43
5785 6926 1.547372 GTTAGACGGGGTGCACTTAGA 59.453 52.381 17.98 0.00 0.00 2.10
5786 6927 1.734707 CGTTAGACGGGGTGCACTTAG 60.735 57.143 17.98 10.37 38.08 2.18
5787 6928 0.244450 CGTTAGACGGGGTGCACTTA 59.756 55.000 17.98 0.00 38.08 2.24
5788 6929 1.005394 CGTTAGACGGGGTGCACTT 60.005 57.895 17.98 0.00 38.08 3.16
5789 6930 2.654877 CGTTAGACGGGGTGCACT 59.345 61.111 17.98 0.00 38.08 4.40
5799 6940 4.259930 GGTGTTGTTGTGTGTACGTTAGAC 60.260 45.833 0.00 0.00 0.00 2.59
5800 6941 3.864583 GGTGTTGTTGTGTGTACGTTAGA 59.135 43.478 0.00 0.00 0.00 2.10
5801 6942 3.617706 TGGTGTTGTTGTGTGTACGTTAG 59.382 43.478 0.00 0.00 0.00 2.34
5802 6943 3.593096 TGGTGTTGTTGTGTGTACGTTA 58.407 40.909 0.00 0.00 0.00 3.18
5803 6944 2.424557 TGGTGTTGTTGTGTGTACGTT 58.575 42.857 0.00 0.00 0.00 3.99
5804 6945 2.096220 TGGTGTTGTTGTGTGTACGT 57.904 45.000 0.00 0.00 0.00 3.57
5805 6946 2.417239 ACTTGGTGTTGTTGTGTGTACG 59.583 45.455 0.00 0.00 0.00 3.67
5806 6947 5.548706 TTACTTGGTGTTGTTGTGTGTAC 57.451 39.130 0.00 0.00 0.00 2.90
5807 6948 5.880887 TGATTACTTGGTGTTGTTGTGTGTA 59.119 36.000 0.00 0.00 0.00 2.90
5808 6949 4.702612 TGATTACTTGGTGTTGTTGTGTGT 59.297 37.500 0.00 0.00 0.00 3.72
5809 6950 5.034152 GTGATTACTTGGTGTTGTTGTGTG 58.966 41.667 0.00 0.00 0.00 3.82
5810 6951 4.702612 TGTGATTACTTGGTGTTGTTGTGT 59.297 37.500 0.00 0.00 0.00 3.72
5811 6952 5.242069 TGTGATTACTTGGTGTTGTTGTG 57.758 39.130 0.00 0.00 0.00 3.33
5812 6953 4.202010 GCTGTGATTACTTGGTGTTGTTGT 60.202 41.667 0.00 0.00 0.00 3.32
5813 6954 4.290155 GCTGTGATTACTTGGTGTTGTTG 58.710 43.478 0.00 0.00 0.00 3.33
5814 6955 3.317993 GGCTGTGATTACTTGGTGTTGTT 59.682 43.478 0.00 0.00 0.00 2.83
5815 6956 2.884639 GGCTGTGATTACTTGGTGTTGT 59.115 45.455 0.00 0.00 0.00 3.32
5816 6957 3.149196 AGGCTGTGATTACTTGGTGTTG 58.851 45.455 0.00 0.00 0.00 3.33
5817 6958 3.181445 TGAGGCTGTGATTACTTGGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
5818 6959 2.371841 TGAGGCTGTGATTACTTGGTGT 59.628 45.455 0.00 0.00 0.00 4.16
5819 6960 2.744202 GTGAGGCTGTGATTACTTGGTG 59.256 50.000 0.00 0.00 0.00 4.17
5820 6961 2.612972 CGTGAGGCTGTGATTACTTGGT 60.613 50.000 0.00 0.00 0.00 3.67
5821 6962 2.002586 CGTGAGGCTGTGATTACTTGG 58.997 52.381 0.00 0.00 0.00 3.61
5822 6963 2.959516 TCGTGAGGCTGTGATTACTTG 58.040 47.619 0.00 0.00 0.00 3.16
5823 6964 3.895232 ATCGTGAGGCTGTGATTACTT 57.105 42.857 0.00 0.00 0.00 2.24
5824 6965 3.895232 AATCGTGAGGCTGTGATTACT 57.105 42.857 0.00 0.00 29.71 2.24
5825 6966 4.051922 CCTAATCGTGAGGCTGTGATTAC 58.948 47.826 0.00 0.00 33.42 1.89
5826 6967 4.322080 CCTAATCGTGAGGCTGTGATTA 57.678 45.455 0.00 2.14 33.42 1.75
5827 6968 3.185246 CCTAATCGTGAGGCTGTGATT 57.815 47.619 0.00 0.87 35.40 2.57
5828 6969 2.898729 CCTAATCGTGAGGCTGTGAT 57.101 50.000 0.00 0.00 0.00 3.06
5835 6976 5.927115 GGAATAAGTTAGCCTAATCGTGAGG 59.073 44.000 0.00 0.00 37.12 3.86
5836 6977 6.513180 TGGAATAAGTTAGCCTAATCGTGAG 58.487 40.000 6.25 0.00 0.00 3.51
5837 6978 6.474140 TGGAATAAGTTAGCCTAATCGTGA 57.526 37.500 6.25 0.00 0.00 4.35
5838 6979 7.657761 AGATTGGAATAAGTTAGCCTAATCGTG 59.342 37.037 13.02 0.00 0.00 4.35
5839 6980 7.736893 AGATTGGAATAAGTTAGCCTAATCGT 58.263 34.615 13.02 4.93 0.00 3.73
5840 6981 9.706691 TTAGATTGGAATAAGTTAGCCTAATCG 57.293 33.333 13.02 0.00 0.00 3.34
5842 6983 9.794719 GGTTAGATTGGAATAAGTTAGCCTAAT 57.205 33.333 6.25 2.25 0.00 1.73
5843 6984 7.929785 CGGTTAGATTGGAATAAGTTAGCCTAA 59.070 37.037 6.25 0.00 0.00 2.69
5844 6985 7.070322 ACGGTTAGATTGGAATAAGTTAGCCTA 59.930 37.037 6.25 0.30 0.00 3.93
5845 6986 6.126854 ACGGTTAGATTGGAATAAGTTAGCCT 60.127 38.462 6.25 0.00 0.00 4.58
5846 6987 6.053650 ACGGTTAGATTGGAATAAGTTAGCC 58.946 40.000 0.00 0.00 0.00 3.93
5847 6988 6.759827 TGACGGTTAGATTGGAATAAGTTAGC 59.240 38.462 0.00 0.00 0.00 3.09
5848 6989 8.712285 TTGACGGTTAGATTGGAATAAGTTAG 57.288 34.615 0.00 0.00 0.00 2.34
5849 6990 8.938906 GTTTGACGGTTAGATTGGAATAAGTTA 58.061 33.333 0.00 0.00 0.00 2.24
5850 6991 7.446013 TGTTTGACGGTTAGATTGGAATAAGTT 59.554 33.333 0.00 0.00 0.00 2.66
5851 6992 6.938030 TGTTTGACGGTTAGATTGGAATAAGT 59.062 34.615 0.00 0.00 0.00 2.24
5852 6993 7.372451 TGTTTGACGGTTAGATTGGAATAAG 57.628 36.000 0.00 0.00 0.00 1.73
5853 6994 7.228906 TGTTGTTTGACGGTTAGATTGGAATAA 59.771 33.333 0.00 0.00 0.00 1.40
5854 6995 6.711194 TGTTGTTTGACGGTTAGATTGGAATA 59.289 34.615 0.00 0.00 0.00 1.75
5855 6996 5.533154 TGTTGTTTGACGGTTAGATTGGAAT 59.467 36.000 0.00 0.00 0.00 3.01
5856 6997 4.882427 TGTTGTTTGACGGTTAGATTGGAA 59.118 37.500 0.00 0.00 0.00 3.53
5857 6998 4.452825 TGTTGTTTGACGGTTAGATTGGA 58.547 39.130 0.00 0.00 0.00 3.53
5858 6999 4.822036 TGTTGTTTGACGGTTAGATTGG 57.178 40.909 0.00 0.00 0.00 3.16
5859 7000 5.816919 AGTTGTTGTTTGACGGTTAGATTG 58.183 37.500 0.00 0.00 0.00 2.67
5860 7001 7.556733 TTAGTTGTTGTTTGACGGTTAGATT 57.443 32.000 0.00 0.00 0.00 2.40
5861 7002 7.556733 TTTAGTTGTTGTTTGACGGTTAGAT 57.443 32.000 0.00 0.00 0.00 1.98
5862 7003 6.981762 TTTAGTTGTTGTTTGACGGTTAGA 57.018 33.333 0.00 0.00 0.00 2.10
5863 7004 9.537848 GATATTTAGTTGTTGTTTGACGGTTAG 57.462 33.333 0.00 0.00 0.00 2.34
5864 7005 8.505625 GGATATTTAGTTGTTGTTTGACGGTTA 58.494 33.333 0.00 0.00 0.00 2.85
5865 7006 7.364970 GGATATTTAGTTGTTGTTTGACGGTT 58.635 34.615 0.00 0.00 0.00 4.44
5866 7007 6.072342 GGGATATTTAGTTGTTGTTTGACGGT 60.072 38.462 0.00 0.00 0.00 4.83
5867 7008 6.072397 TGGGATATTTAGTTGTTGTTTGACGG 60.072 38.462 0.00 0.00 0.00 4.79
5868 7009 6.904498 TGGGATATTTAGTTGTTGTTTGACG 58.096 36.000 0.00 0.00 0.00 4.35
5869 7010 9.535878 TTTTGGGATATTTAGTTGTTGTTTGAC 57.464 29.630 0.00 0.00 0.00 3.18
5875 7016 9.337091 CGTACTTTTTGGGATATTTAGTTGTTG 57.663 33.333 0.00 0.00 0.00 3.33
5876 7017 9.070179 ACGTACTTTTTGGGATATTTAGTTGTT 57.930 29.630 0.00 0.00 0.00 2.83
5877 7018 8.625786 ACGTACTTTTTGGGATATTTAGTTGT 57.374 30.769 0.00 0.00 0.00 3.32
5878 7019 9.902196 AAACGTACTTTTTGGGATATTTAGTTG 57.098 29.630 0.00 0.00 0.00 3.16
5881 7022 9.712359 GCTAAACGTACTTTTTGGGATATTTAG 57.288 33.333 2.36 0.00 0.00 1.85
5882 7023 9.228949 TGCTAAACGTACTTTTTGGGATATTTA 57.771 29.630 2.36 0.00 0.00 1.40
5883 7024 8.113173 TGCTAAACGTACTTTTTGGGATATTT 57.887 30.769 2.36 0.00 0.00 1.40
5884 7025 7.690952 TGCTAAACGTACTTTTTGGGATATT 57.309 32.000 2.36 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.