Multiple sequence alignment - TraesCS3B01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G331300 chr3B 100.000 2309 0 0 1 2309 536430361 536428053 0.000000e+00 4265.0
1 TraesCS3B01G331300 chr1D 100.000 388 0 0 1 388 53254060 53253673 0.000000e+00 717.0
2 TraesCS3B01G331300 chr1B 98.201 389 7 0 1 389 110791566 110791178 0.000000e+00 680.0
3 TraesCS3B01G331300 chr1B 96.899 387 11 1 1 386 332165870 332166256 0.000000e+00 647.0
4 TraesCS3B01G331300 chr5B 97.927 386 7 1 1 386 661528987 661528603 0.000000e+00 667.0
5 TraesCS3B01G331300 chr3A 94.750 400 19 2 960 1358 541225928 541226326 2.520000e-174 621.0
6 TraesCS3B01G331300 chr3A 94.038 369 20 2 573 941 541225491 541225857 2.000000e-155 558.0
7 TraesCS3B01G331300 chr3A 81.596 451 59 15 1716 2154 175810671 175811109 3.650000e-93 351.0
8 TraesCS3B01G331300 chr3A 93.182 220 9 3 1502 1717 541226329 541226546 3.700000e-83 318.0
9 TraesCS3B01G331300 chr3A 87.931 58 0 6 360 416 491533767 491533818 6.890000e-06 62.1
10 TraesCS3B01G331300 chr3D 89.540 478 23 14 482 944 410519168 410518703 4.280000e-162 580.0
11 TraesCS3B01G331300 chr3D 94.636 261 9 2 1099 1358 410518478 410518222 1.290000e-107 399.0
12 TraesCS3B01G331300 chr3D 93.750 192 11 1 942 1132 410518667 410518476 1.040000e-73 287.0
13 TraesCS3B01G331300 chr3D 92.908 141 6 1 1500 1636 410518221 410518081 3.890000e-48 202.0
14 TraesCS3B01G331300 chr4B 91.254 343 11 1 1 343 636693376 636693699 1.260000e-122 449.0
15 TraesCS3B01G331300 chr2B 85.941 441 30 10 1716 2150 381303486 381303900 2.110000e-120 442.0
16 TraesCS3B01G331300 chr2B 94.340 265 14 1 2045 2309 381303885 381304148 2.760000e-109 405.0
17 TraesCS3B01G331300 chr4A 80.889 450 65 12 1716 2154 511224705 511225144 3.680000e-88 335.0
18 TraesCS3B01G331300 chr4A 89.610 231 21 2 1716 1943 606792165 606791935 8.070000e-75 291.0
19 TraesCS3B01G331300 chr4A 88.312 231 24 1 1716 1943 606728385 606728155 8.130000e-70 274.0
20 TraesCS3B01G331300 chr4A 85.043 234 28 5 1716 1943 679266338 679266106 4.960000e-57 231.0
21 TraesCS3B01G331300 chr6B 83.728 338 39 9 1748 2085 178029722 178029401 2.880000e-79 305.0
22 TraesCS3B01G331300 chr6B 80.403 347 50 11 985 1315 619404729 619405073 4.930000e-62 248.0
23 TraesCS3B01G331300 chr2A 81.102 381 51 12 1716 2085 645309265 645308895 3.750000e-73 285.0
24 TraesCS3B01G331300 chr6D 81.765 340 49 9 985 1315 411767166 411767501 2.920000e-69 272.0
25 TraesCS3B01G331300 chr1A 80.966 352 47 14 1755 2097 395477350 395477690 6.330000e-66 261.0
26 TraesCS3B01G331300 chr2D 79.747 237 30 13 141 365 534327192 534327422 3.070000e-34 156.0
27 TraesCS3B01G331300 chr7D 86.139 101 13 1 288 388 173009022 173008923 8.720000e-20 108.0
28 TraesCS3B01G331300 chr7B 82.883 111 15 2 279 389 591142274 591142380 1.890000e-16 97.1
29 TraesCS3B01G331300 chr7B 100.000 32 0 0 358 389 605374712 605374743 2.480000e-05 60.2
30 TraesCS3B01G331300 chr6A 83.838 99 14 2 279 376 13618014 13618111 2.440000e-15 93.5
31 TraesCS3B01G331300 chr6A 84.906 53 8 0 360 412 605779902 605779850 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G331300 chr3B 536428053 536430361 2308 True 4265.0 4265 100.0000 1 2309 1 chr3B.!!$R1 2308
1 TraesCS3B01G331300 chr3A 541225491 541226546 1055 False 499.0 621 93.9900 573 1717 3 chr3A.!!$F3 1144
2 TraesCS3B01G331300 chr3D 410518081 410519168 1087 True 367.0 580 92.7085 482 1636 4 chr3D.!!$R1 1154
3 TraesCS3B01G331300 chr2B 381303486 381304148 662 False 423.5 442 90.1405 1716 2309 2 chr2B.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.0293 GTGTTGCACATGTCAAGCGT 59.971 50.0 0.0 0.0 34.08 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1509 0.039618 GCATGGAGTTGGGAAAGGGA 59.96 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.006027 GCTTTACAATTTTTGAAGATGTCAAGC 58.994 33.333 7.19 7.19 46.85 4.01
27 28 7.945033 TTACAATTTTTGAAGATGTCAAGCC 57.055 32.000 0.00 0.00 46.85 4.35
28 29 6.165700 ACAATTTTTGAAGATGTCAAGCCT 57.834 33.333 0.00 0.00 46.85 4.58
29 30 6.585416 ACAATTTTTGAAGATGTCAAGCCTT 58.415 32.000 0.00 0.00 46.85 4.35
30 31 6.480981 ACAATTTTTGAAGATGTCAAGCCTTG 59.519 34.615 0.00 0.00 46.85 3.61
31 32 5.850557 TTTTTGAAGATGTCAAGCCTTGA 57.149 34.783 2.24 2.24 46.85 3.02
32 33 5.443185 TTTTGAAGATGTCAAGCCTTGAG 57.557 39.130 7.55 0.00 46.85 3.02
33 34 3.063510 TGAAGATGTCAAGCCTTGAGG 57.936 47.619 7.55 0.00 41.01 3.86
46 47 3.911661 CCTTGAGGCTCTTTTGTTCAG 57.088 47.619 16.72 0.00 0.00 3.02
47 48 3.217626 CCTTGAGGCTCTTTTGTTCAGT 58.782 45.455 16.72 0.00 0.00 3.41
48 49 3.004106 CCTTGAGGCTCTTTTGTTCAGTG 59.996 47.826 16.72 0.00 0.00 3.66
49 50 3.281727 TGAGGCTCTTTTGTTCAGTGT 57.718 42.857 16.72 0.00 0.00 3.55
50 51 3.620488 TGAGGCTCTTTTGTTCAGTGTT 58.380 40.909 16.72 0.00 0.00 3.32
51 52 3.378112 TGAGGCTCTTTTGTTCAGTGTTG 59.622 43.478 16.72 0.00 0.00 3.33
52 53 2.099756 AGGCTCTTTTGTTCAGTGTTGC 59.900 45.455 0.00 0.00 0.00 4.17
53 54 2.159254 GGCTCTTTTGTTCAGTGTTGCA 60.159 45.455 0.00 0.00 0.00 4.08
54 55 2.854185 GCTCTTTTGTTCAGTGTTGCAC 59.146 45.455 0.00 0.00 34.10 4.57
55 56 3.673052 GCTCTTTTGTTCAGTGTTGCACA 60.673 43.478 2.01 0.00 36.74 4.57
56 57 4.675510 CTCTTTTGTTCAGTGTTGCACAT 58.324 39.130 2.01 0.00 36.74 3.21
57 58 4.422840 TCTTTTGTTCAGTGTTGCACATG 58.577 39.130 2.01 0.00 36.74 3.21
58 59 3.865011 TTTGTTCAGTGTTGCACATGT 57.135 38.095 0.00 0.00 36.74 3.21
59 60 3.419264 TTGTTCAGTGTTGCACATGTC 57.581 42.857 0.00 0.00 36.74 3.06
60 61 2.363683 TGTTCAGTGTTGCACATGTCA 58.636 42.857 0.00 0.00 36.74 3.58
61 62 2.751806 TGTTCAGTGTTGCACATGTCAA 59.248 40.909 0.00 0.73 36.74 3.18
62 63 3.181498 TGTTCAGTGTTGCACATGTCAAG 60.181 43.478 0.00 0.00 36.74 3.02
63 64 1.334556 TCAGTGTTGCACATGTCAAGC 59.665 47.619 0.00 0.00 36.74 4.01
64 65 0.308684 AGTGTTGCACATGTCAAGCG 59.691 50.000 0.00 0.00 36.74 4.68
65 66 0.029300 GTGTTGCACATGTCAAGCGT 59.971 50.000 0.00 0.00 34.08 5.07
66 67 0.307453 TGTTGCACATGTCAAGCGTC 59.693 50.000 0.00 0.00 0.00 5.19
67 68 0.722469 GTTGCACATGTCAAGCGTCG 60.722 55.000 0.00 0.00 0.00 5.12
68 69 1.840630 TTGCACATGTCAAGCGTCGG 61.841 55.000 0.00 0.00 0.00 4.79
69 70 2.317609 GCACATGTCAAGCGTCGGT 61.318 57.895 0.00 0.00 0.00 4.69
70 71 1.781555 CACATGTCAAGCGTCGGTC 59.218 57.895 0.00 0.00 0.00 4.79
71 72 1.374252 ACATGTCAAGCGTCGGTCC 60.374 57.895 0.00 0.00 0.00 4.46
72 73 1.079819 CATGTCAAGCGTCGGTCCT 60.080 57.895 0.00 0.00 0.00 3.85
73 74 0.172578 CATGTCAAGCGTCGGTCCTA 59.827 55.000 0.00 0.00 0.00 2.94
74 75 0.892755 ATGTCAAGCGTCGGTCCTAA 59.107 50.000 0.00 0.00 0.00 2.69
75 76 0.675083 TGTCAAGCGTCGGTCCTAAA 59.325 50.000 0.00 0.00 0.00 1.85
76 77 1.068895 TGTCAAGCGTCGGTCCTAAAA 59.931 47.619 0.00 0.00 0.00 1.52
77 78 1.725164 GTCAAGCGTCGGTCCTAAAAG 59.275 52.381 0.00 0.00 0.00 2.27
78 79 1.614903 TCAAGCGTCGGTCCTAAAAGA 59.385 47.619 0.00 0.00 0.00 2.52
79 80 2.036217 TCAAGCGTCGGTCCTAAAAGAA 59.964 45.455 0.00 0.00 0.00 2.52
80 81 2.803956 CAAGCGTCGGTCCTAAAAGAAA 59.196 45.455 0.00 0.00 0.00 2.52
81 82 2.685100 AGCGTCGGTCCTAAAAGAAAG 58.315 47.619 0.00 0.00 0.00 2.62
82 83 2.298163 AGCGTCGGTCCTAAAAGAAAGA 59.702 45.455 0.00 0.00 0.00 2.52
83 84 3.062042 GCGTCGGTCCTAAAAGAAAGAA 58.938 45.455 0.00 0.00 0.00 2.52
84 85 3.495753 GCGTCGGTCCTAAAAGAAAGAAA 59.504 43.478 0.00 0.00 0.00 2.52
85 86 4.610007 GCGTCGGTCCTAAAAGAAAGAAAC 60.610 45.833 0.00 0.00 0.00 2.78
86 87 4.508861 CGTCGGTCCTAAAAGAAAGAAACA 59.491 41.667 0.00 0.00 0.00 2.83
87 88 5.006941 CGTCGGTCCTAAAAGAAAGAAACAA 59.993 40.000 0.00 0.00 0.00 2.83
88 89 6.197276 GTCGGTCCTAAAAGAAAGAAACAAC 58.803 40.000 0.00 0.00 0.00 3.32
89 90 6.037940 GTCGGTCCTAAAAGAAAGAAACAACT 59.962 38.462 0.00 0.00 0.00 3.16
90 91 7.225341 GTCGGTCCTAAAAGAAAGAAACAACTA 59.775 37.037 0.00 0.00 0.00 2.24
91 92 7.769970 TCGGTCCTAAAAGAAAGAAACAACTAA 59.230 33.333 0.00 0.00 0.00 2.24
92 93 8.400186 CGGTCCTAAAAGAAAGAAACAACTAAA 58.600 33.333 0.00 0.00 0.00 1.85
122 123 9.875691 TCTGGAAGATAATATGTACATATGCAC 57.124 33.333 25.42 18.60 38.67 4.57
123 124 9.657419 CTGGAAGATAATATGTACATATGCACA 57.343 33.333 25.42 11.15 32.66 4.57
134 135 7.446001 TGTACATATGCACATTCTTGAAACA 57.554 32.000 4.57 0.00 0.00 2.83
135 136 7.880105 TGTACATATGCACATTCTTGAAACAA 58.120 30.769 4.57 0.00 0.00 2.83
136 137 7.807433 TGTACATATGCACATTCTTGAAACAAC 59.193 33.333 4.57 0.00 0.00 3.32
137 138 6.985117 ACATATGCACATTCTTGAAACAACT 58.015 32.000 1.58 0.00 0.00 3.16
138 139 7.436118 ACATATGCACATTCTTGAAACAACTT 58.564 30.769 1.58 0.00 0.00 2.66
139 140 7.927629 ACATATGCACATTCTTGAAACAACTTT 59.072 29.630 1.58 0.00 0.00 2.66
140 141 9.409312 CATATGCACATTCTTGAAACAACTTTA 57.591 29.630 0.00 0.00 0.00 1.85
141 142 7.935338 ATGCACATTCTTGAAACAACTTTAG 57.065 32.000 0.00 0.00 0.00 1.85
142 143 6.862209 TGCACATTCTTGAAACAACTTTAGT 58.138 32.000 0.00 0.00 0.00 2.24
143 144 7.990917 TGCACATTCTTGAAACAACTTTAGTA 58.009 30.769 0.00 0.00 0.00 1.82
144 145 8.629158 TGCACATTCTTGAAACAACTTTAGTAT 58.371 29.630 0.00 0.00 0.00 2.12
145 146 9.118236 GCACATTCTTGAAACAACTTTAGTATC 57.882 33.333 0.00 0.00 0.00 2.24
199 200 9.665719 ATTTTGGCAAGTAAAGGTTATTTATGG 57.334 29.630 0.00 0.00 0.00 2.74
200 201 7.784470 TTGGCAAGTAAAGGTTATTTATGGT 57.216 32.000 0.00 0.00 0.00 3.55
201 202 7.399245 TGGCAAGTAAAGGTTATTTATGGTC 57.601 36.000 0.00 0.00 0.00 4.02
202 203 6.378848 TGGCAAGTAAAGGTTATTTATGGTCC 59.621 38.462 0.00 0.00 0.00 4.46
203 204 6.378848 GGCAAGTAAAGGTTATTTATGGTCCA 59.621 38.462 0.00 0.00 0.00 4.02
204 205 7.255569 GCAAGTAAAGGTTATTTATGGTCCAC 58.744 38.462 0.00 0.00 0.00 4.02
205 206 7.094118 GCAAGTAAAGGTTATTTATGGTCCACA 60.094 37.037 0.00 0.00 0.00 4.17
206 207 8.966868 CAAGTAAAGGTTATTTATGGTCCACAT 58.033 33.333 0.00 0.00 43.68 3.21
207 208 9.541884 AAGTAAAGGTTATTTATGGTCCACATT 57.458 29.630 0.00 0.00 41.03 2.71
208 209 9.541884 AGTAAAGGTTATTTATGGTCCACATTT 57.458 29.630 0.00 0.00 41.03 2.32
211 212 9.541884 AAAGGTTATTTATGGTCCACATTTACT 57.458 29.630 0.00 0.00 41.03 2.24
212 213 9.541884 AAGGTTATTTATGGTCCACATTTACTT 57.458 29.630 0.00 0.00 41.03 2.24
213 214 9.541884 AGGTTATTTATGGTCCACATTTACTTT 57.458 29.630 0.00 0.00 41.03 2.66
221 222 7.648039 TGGTCCACATTTACTTTTTGTAAGT 57.352 32.000 0.00 0.00 41.55 2.24
222 223 8.068892 TGGTCCACATTTACTTTTTGTAAGTT 57.931 30.769 0.00 0.00 41.55 2.66
223 224 7.976734 TGGTCCACATTTACTTTTTGTAAGTTG 59.023 33.333 0.00 0.00 41.55 3.16
224 225 8.192110 GGTCCACATTTACTTTTTGTAAGTTGA 58.808 33.333 0.00 0.00 41.55 3.18
225 226 9.233232 GTCCACATTTACTTTTTGTAAGTTGAG 57.767 33.333 0.00 0.00 41.55 3.02
226 227 9.179909 TCCACATTTACTTTTTGTAAGTTGAGA 57.820 29.630 0.00 0.00 41.55 3.27
227 228 9.965824 CCACATTTACTTTTTGTAAGTTGAGAT 57.034 29.630 0.00 0.00 41.55 2.75
259 260 6.773976 TTGGATGAAGTTGTGATTATTCCC 57.226 37.500 0.00 0.00 0.00 3.97
260 261 5.825532 TGGATGAAGTTGTGATTATTCCCA 58.174 37.500 0.00 0.00 0.00 4.37
261 262 5.652014 TGGATGAAGTTGTGATTATTCCCAC 59.348 40.000 0.00 0.00 0.00 4.61
262 263 5.652014 GGATGAAGTTGTGATTATTCCCACA 59.348 40.000 0.00 0.00 41.04 4.17
334 335 7.850935 TGATATATTTTCTTCCTAGGACGGT 57.149 36.000 12.22 0.18 0.00 4.83
335 336 8.258850 TGATATATTTTCTTCCTAGGACGGTT 57.741 34.615 12.22 0.00 0.00 4.44
336 337 8.148351 TGATATATTTTCTTCCTAGGACGGTTG 58.852 37.037 12.22 0.00 0.00 3.77
337 338 4.903045 ATTTTCTTCCTAGGACGGTTGA 57.097 40.909 12.22 2.35 0.00 3.18
338 339 4.903045 TTTTCTTCCTAGGACGGTTGAT 57.097 40.909 12.22 0.00 0.00 2.57
339 340 6.555463 ATTTTCTTCCTAGGACGGTTGATA 57.445 37.500 12.22 0.00 0.00 2.15
340 341 6.363167 TTTTCTTCCTAGGACGGTTGATAA 57.637 37.500 12.22 4.25 0.00 1.75
341 342 6.363167 TTTCTTCCTAGGACGGTTGATAAA 57.637 37.500 12.22 2.28 0.00 1.40
342 343 6.363167 TTCTTCCTAGGACGGTTGATAAAA 57.637 37.500 12.22 0.00 0.00 1.52
343 344 6.363167 TCTTCCTAGGACGGTTGATAAAAA 57.637 37.500 12.22 0.00 0.00 1.94
344 345 6.168389 TCTTCCTAGGACGGTTGATAAAAAC 58.832 40.000 12.22 0.00 0.00 2.43
345 346 5.486735 TCCTAGGACGGTTGATAAAAACA 57.513 39.130 7.62 0.00 0.00 2.83
346 347 6.057321 TCCTAGGACGGTTGATAAAAACAT 57.943 37.500 7.62 0.00 0.00 2.71
347 348 7.185318 TCCTAGGACGGTTGATAAAAACATA 57.815 36.000 7.62 0.00 0.00 2.29
348 349 7.622713 TCCTAGGACGGTTGATAAAAACATAA 58.377 34.615 7.62 0.00 0.00 1.90
349 350 7.550196 TCCTAGGACGGTTGATAAAAACATAAC 59.450 37.037 7.62 0.00 0.00 1.89
350 351 6.505044 AGGACGGTTGATAAAAACATAACC 57.495 37.500 0.00 0.00 37.90 2.85
351 352 6.005198 AGGACGGTTGATAAAAACATAACCA 58.995 36.000 0.00 0.00 40.54 3.67
352 353 6.661805 AGGACGGTTGATAAAAACATAACCAT 59.338 34.615 0.00 0.00 40.54 3.55
353 354 6.750039 GGACGGTTGATAAAAACATAACCATG 59.250 38.462 0.00 0.00 40.54 3.66
354 355 7.362229 GGACGGTTGATAAAAACATAACCATGA 60.362 37.037 0.00 0.00 40.54 3.07
355 356 8.062065 ACGGTTGATAAAAACATAACCATGAT 57.938 30.769 0.00 0.00 40.54 2.45
356 357 9.179909 ACGGTTGATAAAAACATAACCATGATA 57.820 29.630 0.00 0.00 40.54 2.15
364 365 8.850454 AAAAACATAACCATGATAATACGTGC 57.150 30.769 0.00 0.00 35.96 5.34
365 366 5.839262 ACATAACCATGATAATACGTGCG 57.161 39.130 0.00 0.00 35.96 5.34
366 367 5.294356 ACATAACCATGATAATACGTGCGT 58.706 37.500 0.00 2.05 35.96 5.24
367 368 5.756347 ACATAACCATGATAATACGTGCGTT 59.244 36.000 1.66 0.00 35.96 4.84
368 369 4.530094 AACCATGATAATACGTGCGTTG 57.470 40.909 1.66 0.00 0.00 4.10
369 370 2.286833 ACCATGATAATACGTGCGTTGC 59.713 45.455 1.66 0.00 0.00 4.17
370 371 2.286563 CCATGATAATACGTGCGTTGCA 59.713 45.455 1.66 0.00 35.60 4.08
389 390 4.240883 GCACGTGCATGTTTACTAGTAC 57.759 45.455 34.52 0.00 41.59 2.73
390 391 3.924686 GCACGTGCATGTTTACTAGTACT 59.075 43.478 34.52 0.00 41.59 2.73
391 392 5.097529 GCACGTGCATGTTTACTAGTACTA 58.902 41.667 34.52 1.89 41.59 1.82
392 393 5.229469 GCACGTGCATGTTTACTAGTACTAG 59.771 44.000 34.52 25.30 41.59 2.57
393 394 7.113694 GCACGTGCATGTTTACTAGTACTAGT 61.114 42.308 34.52 32.39 43.67 2.57
394 395 7.466805 CACGTGCATGTTTACTAGTACTAGTA 58.533 38.462 30.50 30.50 43.98 1.82
422 423 8.446599 AACTAAAATGTGCACTTGTAGTTACT 57.553 30.769 26.37 14.13 30.60 2.24
423 424 9.550406 AACTAAAATGTGCACTTGTAGTTACTA 57.450 29.630 26.37 5.52 30.60 1.82
424 425 9.204570 ACTAAAATGTGCACTTGTAGTTACTAG 57.795 33.333 19.41 6.91 35.61 2.57
425 426 9.419297 CTAAAATGTGCACTTGTAGTTACTAGA 57.581 33.333 19.41 0.00 34.05 2.43
426 427 8.671384 AAAATGTGCACTTGTAGTTACTAGAA 57.329 30.769 19.41 2.07 34.05 2.10
427 428 7.891183 AATGTGCACTTGTAGTTACTAGAAG 57.109 36.000 22.43 22.43 41.28 2.85
428 429 6.644248 TGTGCACTTGTAGTTACTAGAAGA 57.356 37.500 28.29 9.82 38.93 2.87
429 430 6.678878 TGTGCACTTGTAGTTACTAGAAGAG 58.321 40.000 28.29 22.82 38.93 2.85
430 431 6.264744 TGTGCACTTGTAGTTACTAGAAGAGT 59.735 38.462 28.29 11.11 38.93 3.24
431 432 7.146648 GTGCACTTGTAGTTACTAGAAGAGTT 58.853 38.462 28.29 9.82 38.93 3.01
432 433 8.295288 GTGCACTTGTAGTTACTAGAAGAGTTA 58.705 37.037 28.29 15.00 38.93 2.24
433 434 8.512956 TGCACTTGTAGTTACTAGAAGAGTTAG 58.487 37.037 28.29 15.96 38.93 2.34
434 435 7.485595 GCACTTGTAGTTACTAGAAGAGTTAGC 59.514 40.741 28.29 19.92 38.93 3.09
435 436 8.732531 CACTTGTAGTTACTAGAAGAGTTAGCT 58.267 37.037 28.29 8.01 38.93 3.32
436 437 9.956640 ACTTGTAGTTACTAGAAGAGTTAGCTA 57.043 33.333 28.29 0.00 38.93 3.32
439 440 9.956640 TGTAGTTACTAGAAGAGTTAGCTAAGT 57.043 33.333 13.75 13.75 39.81 2.24
443 444 9.720667 GTTACTAGAAGAGTTAGCTAAGTTAGC 57.279 37.037 24.60 24.60 44.80 3.09
444 445 7.337480 ACTAGAAGAGTTAGCTAAGTTAGCC 57.663 40.000 27.44 14.78 44.18 3.93
445 446 7.120716 ACTAGAAGAGTTAGCTAAGTTAGCCT 58.879 38.462 27.44 18.82 44.18 4.58
446 447 8.273605 ACTAGAAGAGTTAGCTAAGTTAGCCTA 58.726 37.037 27.44 17.91 44.18 3.93
459 460 9.356433 GCTAAGTTAGCCTAGCATACTTATTAC 57.644 37.037 22.09 0.00 45.95 1.89
467 468 8.881262 AGCCTAGCATACTTATTACATAAACCT 58.119 33.333 0.00 0.00 0.00 3.50
468 469 8.936864 GCCTAGCATACTTATTACATAAACCTG 58.063 37.037 0.00 0.00 0.00 4.00
472 473 7.661847 AGCATACTTATTACATAAACCTGAGGC 59.338 37.037 0.00 0.00 0.00 4.70
473 474 7.661847 GCATACTTATTACATAAACCTGAGGCT 59.338 37.037 0.00 0.00 0.00 4.58
476 477 7.506971 ACTTATTACATAAACCTGAGGCTACC 58.493 38.462 0.00 0.00 0.00 3.18
477 478 2.981859 ACATAAACCTGAGGCTACCG 57.018 50.000 0.00 0.00 0.00 4.02
478 479 2.185387 ACATAAACCTGAGGCTACCGT 58.815 47.619 0.00 0.00 0.00 4.83
479 480 3.368248 ACATAAACCTGAGGCTACCGTA 58.632 45.455 0.00 0.00 0.00 4.02
480 481 3.131755 ACATAAACCTGAGGCTACCGTAC 59.868 47.826 0.00 0.00 0.00 3.67
489 490 2.039509 GCTACCGTACCTAGCCCTG 58.960 63.158 6.09 0.00 31.94 4.45
520 523 7.650890 TCTATATGCAGTAACAATGCCATTTG 58.349 34.615 0.00 0.00 43.18 2.32
540 543 4.853924 TGGTCCTTGAAAATCTTTCTGC 57.146 40.909 1.22 0.00 0.00 4.26
559 562 2.107953 CCTGAAGAGGCTAGGCGC 59.892 66.667 12.28 12.28 38.13 6.53
560 563 2.430610 CCTGAAGAGGCTAGGCGCT 61.431 63.158 16.95 16.95 39.13 5.92
561 564 1.109920 CCTGAAGAGGCTAGGCGCTA 61.110 60.000 22.47 7.62 39.13 4.26
562 565 0.313672 CTGAAGAGGCTAGGCGCTAG 59.686 60.000 22.47 13.45 39.13 3.42
563 566 1.109920 TGAAGAGGCTAGGCGCTAGG 61.110 60.000 22.47 0.00 39.13 3.02
564 567 1.811645 GAAGAGGCTAGGCGCTAGGG 61.812 65.000 22.47 1.65 39.13 3.53
565 568 3.307108 GAGGCTAGGCGCTAGGGG 61.307 72.222 12.91 0.00 39.13 4.79
583 586 5.913946 AGGGGGTTCTATCCTTAAAGATG 57.086 43.478 0.00 0.00 0.00 2.90
620 623 0.620556 TCCAAATGCTCCAGGAGACC 59.379 55.000 21.89 3.73 0.00 3.85
625 634 0.987081 ATGCTCCAGGAGACCAGCAT 60.987 55.000 21.89 13.72 45.38 3.79
656 665 1.080298 GGTCAACCCTCGTACACGG 60.080 63.158 1.39 0.00 40.29 4.94
672 681 2.946329 ACACGGTACATGCAAGTCAAAA 59.054 40.909 0.00 0.00 0.00 2.44
722 731 5.046159 ACCACATCGAGGTCCAAATTAACTA 60.046 40.000 0.00 0.00 32.90 2.24
723 732 5.523916 CCACATCGAGGTCCAAATTAACTAG 59.476 44.000 0.00 0.00 0.00 2.57
847 856 1.103398 ACAGCACTTCACCACTTGCC 61.103 55.000 0.00 0.00 35.47 4.52
871 880 7.046033 CCTACACGACCAGGTAAAAATAATCT 58.954 38.462 0.00 0.00 0.00 2.40
934 950 1.625818 CCCAGACTGCAAGAGTAAGGT 59.374 52.381 0.00 0.00 37.43 3.50
960 1014 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1030 1097 0.863538 CTTCATCACGACGGAGCTCG 60.864 60.000 7.83 5.83 45.88 5.03
1077 1144 2.716017 CCTGCTCGTCCAGGGTCTC 61.716 68.421 13.89 0.00 46.93 3.36
1082 1149 1.524863 CTCGTCCAGGGTCTCGTGTT 61.525 60.000 0.00 0.00 0.00 3.32
1137 1235 3.868077 CCAAAGATAAGAAGCTCAGGTCG 59.132 47.826 0.00 0.00 0.00 4.79
1294 1393 4.268359 GAGGATTGAATTGCTTGGAGAGT 58.732 43.478 0.00 0.00 0.00 3.24
1331 1430 2.232941 TCTGAACGTATGGACAGTTCCC 59.767 50.000 0.00 0.00 42.01 3.97
1358 1457 5.060662 TCTGAGTTGTCGTGGATTCTTAG 57.939 43.478 0.00 0.00 0.00 2.18
1359 1458 4.082190 TCTGAGTTGTCGTGGATTCTTAGG 60.082 45.833 0.00 0.00 0.00 2.69
1360 1459 2.930682 GAGTTGTCGTGGATTCTTAGGC 59.069 50.000 0.00 0.00 0.00 3.93
1361 1460 2.567615 AGTTGTCGTGGATTCTTAGGCT 59.432 45.455 0.00 0.00 0.00 4.58
1362 1461 2.930682 GTTGTCGTGGATTCTTAGGCTC 59.069 50.000 0.00 0.00 0.00 4.70
1363 1462 2.457598 TGTCGTGGATTCTTAGGCTCT 58.542 47.619 0.00 0.00 0.00 4.09
1364 1463 2.166459 TGTCGTGGATTCTTAGGCTCTG 59.834 50.000 0.00 0.00 0.00 3.35
1365 1464 2.166664 GTCGTGGATTCTTAGGCTCTGT 59.833 50.000 0.00 0.00 0.00 3.41
1366 1465 2.832129 TCGTGGATTCTTAGGCTCTGTT 59.168 45.455 0.00 0.00 0.00 3.16
1367 1466 3.119101 TCGTGGATTCTTAGGCTCTGTTC 60.119 47.826 0.00 0.00 0.00 3.18
1368 1467 3.190874 GTGGATTCTTAGGCTCTGTTCG 58.809 50.000 0.00 0.00 0.00 3.95
1369 1468 2.168521 TGGATTCTTAGGCTCTGTTCGG 59.831 50.000 0.00 0.00 0.00 4.30
1370 1469 2.431057 GGATTCTTAGGCTCTGTTCGGA 59.569 50.000 0.00 0.00 0.00 4.55
1371 1470 3.491792 GGATTCTTAGGCTCTGTTCGGAG 60.492 52.174 0.00 4.45 36.50 4.63
1372 1471 2.217510 TCTTAGGCTCTGTTCGGAGT 57.782 50.000 9.89 0.00 35.89 3.85
1373 1472 2.093106 TCTTAGGCTCTGTTCGGAGTC 58.907 52.381 5.23 5.23 38.14 3.36
1374 1473 1.819288 CTTAGGCTCTGTTCGGAGTCA 59.181 52.381 14.42 0.08 40.09 3.41
1375 1474 1.174783 TAGGCTCTGTTCGGAGTCAC 58.825 55.000 14.42 4.62 40.09 3.67
1376 1475 0.540830 AGGCTCTGTTCGGAGTCACT 60.541 55.000 14.42 6.47 40.09 3.41
1377 1476 1.174783 GGCTCTGTTCGGAGTCACTA 58.825 55.000 8.19 0.00 37.82 2.74
1378 1477 1.135344 GGCTCTGTTCGGAGTCACTAC 60.135 57.143 8.19 0.00 37.82 2.73
1379 1478 1.540267 GCTCTGTTCGGAGTCACTACA 59.460 52.381 9.89 0.00 35.89 2.74
1380 1479 2.030185 GCTCTGTTCGGAGTCACTACAA 60.030 50.000 9.89 0.00 35.89 2.41
1381 1480 3.566523 CTCTGTTCGGAGTCACTACAAC 58.433 50.000 0.00 0.00 0.00 3.32
1382 1481 3.220110 TCTGTTCGGAGTCACTACAACT 58.780 45.455 4.58 0.00 0.00 3.16
1383 1482 3.252701 TCTGTTCGGAGTCACTACAACTC 59.747 47.826 4.58 0.00 41.98 3.01
1394 1493 8.170999 GAGTCACTACAACTCCTAAAAATACG 57.829 38.462 0.00 0.00 37.72 3.06
1395 1494 7.889469 AGTCACTACAACTCCTAAAAATACGA 58.111 34.615 0.00 0.00 0.00 3.43
1396 1495 8.529476 AGTCACTACAACTCCTAAAAATACGAT 58.471 33.333 0.00 0.00 0.00 3.73
1397 1496 8.592998 GTCACTACAACTCCTAAAAATACGATG 58.407 37.037 0.00 0.00 0.00 3.84
1398 1497 8.525316 TCACTACAACTCCTAAAAATACGATGA 58.475 33.333 0.00 0.00 0.00 2.92
1399 1498 8.808529 CACTACAACTCCTAAAAATACGATGAG 58.191 37.037 0.00 0.00 0.00 2.90
1400 1499 6.663944 ACAACTCCTAAAAATACGATGAGC 57.336 37.500 0.00 0.00 0.00 4.26
1401 1500 6.407202 ACAACTCCTAAAAATACGATGAGCT 58.593 36.000 0.00 0.00 0.00 4.09
1402 1501 6.313905 ACAACTCCTAAAAATACGATGAGCTG 59.686 38.462 0.00 0.00 0.00 4.24
1403 1502 4.811557 ACTCCTAAAAATACGATGAGCTGC 59.188 41.667 0.00 0.00 0.00 5.25
1404 1503 3.802139 TCCTAAAAATACGATGAGCTGCG 59.198 43.478 0.00 0.00 0.00 5.18
1405 1504 3.059597 CCTAAAAATACGATGAGCTGCGG 60.060 47.826 0.00 0.00 0.00 5.69
1406 1505 2.309528 AAAATACGATGAGCTGCGGA 57.690 45.000 0.00 0.00 0.00 5.54
1407 1506 1.858091 AAATACGATGAGCTGCGGAG 58.142 50.000 0.00 0.00 0.00 4.63
1420 1519 3.077907 CGGAGCTTCCCTTTCCCA 58.922 61.111 0.00 0.00 31.13 4.37
1421 1520 1.378762 CGGAGCTTCCCTTTCCCAA 59.621 57.895 0.00 0.00 31.13 4.12
1422 1521 0.960861 CGGAGCTTCCCTTTCCCAAC 60.961 60.000 0.00 0.00 31.13 3.77
1423 1522 0.405973 GGAGCTTCCCTTTCCCAACT 59.594 55.000 0.00 0.00 0.00 3.16
1424 1523 1.614583 GGAGCTTCCCTTTCCCAACTC 60.615 57.143 0.00 0.00 0.00 3.01
1425 1524 0.405973 AGCTTCCCTTTCCCAACTCC 59.594 55.000 0.00 0.00 0.00 3.85
1426 1525 0.112412 GCTTCCCTTTCCCAACTCCA 59.888 55.000 0.00 0.00 0.00 3.86
1427 1526 1.272704 GCTTCCCTTTCCCAACTCCAT 60.273 52.381 0.00 0.00 0.00 3.41
1428 1527 2.450476 CTTCCCTTTCCCAACTCCATG 58.550 52.381 0.00 0.00 0.00 3.66
1429 1528 0.039618 TCCCTTTCCCAACTCCATGC 59.960 55.000 0.00 0.00 0.00 4.06
1430 1529 0.040204 CCCTTTCCCAACTCCATGCT 59.960 55.000 0.00 0.00 0.00 3.79
1431 1530 1.550869 CCCTTTCCCAACTCCATGCTT 60.551 52.381 0.00 0.00 0.00 3.91
1432 1531 2.250924 CCTTTCCCAACTCCATGCTTT 58.749 47.619 0.00 0.00 0.00 3.51
1433 1532 2.634453 CCTTTCCCAACTCCATGCTTTT 59.366 45.455 0.00 0.00 0.00 2.27
1434 1533 3.071457 CCTTTCCCAACTCCATGCTTTTT 59.929 43.478 0.00 0.00 0.00 1.94
1457 1556 3.307445 CCAGCTCTGGGAGTGGAG 58.693 66.667 8.03 0.00 46.81 3.86
1458 1557 1.611851 CCAGCTCTGGGAGTGGAGT 60.612 63.158 8.03 0.00 46.81 3.85
1459 1558 1.595882 CAGCTCTGGGAGTGGAGTG 59.404 63.158 0.00 0.00 31.39 3.51
1460 1559 0.902048 CAGCTCTGGGAGTGGAGTGA 60.902 60.000 0.00 0.00 31.39 3.41
1461 1560 0.042431 AGCTCTGGGAGTGGAGTGAT 59.958 55.000 0.00 0.00 31.39 3.06
1462 1561 0.177604 GCTCTGGGAGTGGAGTGATG 59.822 60.000 0.00 0.00 31.39 3.07
1463 1562 0.829333 CTCTGGGAGTGGAGTGATGG 59.171 60.000 0.00 0.00 0.00 3.51
1464 1563 0.413434 TCTGGGAGTGGAGTGATGGA 59.587 55.000 0.00 0.00 0.00 3.41
1465 1564 0.829333 CTGGGAGTGGAGTGATGGAG 59.171 60.000 0.00 0.00 0.00 3.86
1466 1565 0.117140 TGGGAGTGGAGTGATGGAGT 59.883 55.000 0.00 0.00 0.00 3.85
1467 1566 0.539051 GGGAGTGGAGTGATGGAGTG 59.461 60.000 0.00 0.00 0.00 3.51
1468 1567 0.539051 GGAGTGGAGTGATGGAGTGG 59.461 60.000 0.00 0.00 0.00 4.00
1469 1568 1.561643 GAGTGGAGTGATGGAGTGGA 58.438 55.000 0.00 0.00 0.00 4.02
1470 1569 1.480137 GAGTGGAGTGATGGAGTGGAG 59.520 57.143 0.00 0.00 0.00 3.86
1471 1570 0.539051 GTGGAGTGATGGAGTGGAGG 59.461 60.000 0.00 0.00 0.00 4.30
1472 1571 0.618680 TGGAGTGATGGAGTGGAGGG 60.619 60.000 0.00 0.00 0.00 4.30
1473 1572 0.618968 GGAGTGATGGAGTGGAGGGT 60.619 60.000 0.00 0.00 0.00 4.34
1474 1573 0.827368 GAGTGATGGAGTGGAGGGTC 59.173 60.000 0.00 0.00 0.00 4.46
1475 1574 0.415429 AGTGATGGAGTGGAGGGTCT 59.585 55.000 0.00 0.00 0.00 3.85
1476 1575 0.827368 GTGATGGAGTGGAGGGTCTC 59.173 60.000 0.00 0.00 0.00 3.36
1484 1583 3.300013 GGAGGGTCTCCGAACAGG 58.700 66.667 0.00 0.00 41.08 4.00
1485 1584 1.609794 GGAGGGTCTCCGAACAGGT 60.610 63.158 0.00 0.00 41.08 4.00
1486 1585 1.192803 GGAGGGTCTCCGAACAGGTT 61.193 60.000 0.00 0.00 41.08 3.50
1487 1586 0.246910 GAGGGTCTCCGAACAGGTTC 59.753 60.000 2.07 2.07 41.99 3.62
1488 1587 0.178929 AGGGTCTCCGAACAGGTTCT 60.179 55.000 10.17 0.00 41.99 3.01
1489 1588 0.685660 GGGTCTCCGAACAGGTTCTT 59.314 55.000 10.17 0.00 41.99 2.52
1490 1589 1.897802 GGGTCTCCGAACAGGTTCTTA 59.102 52.381 10.17 0.00 41.99 2.10
1491 1590 2.500504 GGGTCTCCGAACAGGTTCTTAT 59.499 50.000 10.17 0.00 41.99 1.73
1492 1591 3.055312 GGGTCTCCGAACAGGTTCTTATT 60.055 47.826 10.17 0.00 41.99 1.40
1493 1592 3.933332 GGTCTCCGAACAGGTTCTTATTG 59.067 47.826 10.17 0.00 41.99 1.90
1494 1593 4.562963 GGTCTCCGAACAGGTTCTTATTGT 60.563 45.833 10.17 0.00 41.99 2.71
1495 1594 4.389077 GTCTCCGAACAGGTTCTTATTGTG 59.611 45.833 10.17 0.00 41.99 3.33
1496 1595 3.670625 TCCGAACAGGTTCTTATTGTGG 58.329 45.455 10.17 2.86 41.99 4.17
1497 1596 3.325425 TCCGAACAGGTTCTTATTGTGGA 59.675 43.478 10.17 4.96 41.99 4.02
1498 1597 4.019681 TCCGAACAGGTTCTTATTGTGGAT 60.020 41.667 10.17 0.00 41.99 3.41
1512 1611 5.649782 ATTGTGGATTTGTGGTTGAGATC 57.350 39.130 0.00 0.00 0.00 2.75
1660 1764 8.006298 TGTGATTATGGTTCTTGAGTTTTTGT 57.994 30.769 0.00 0.00 0.00 2.83
1664 1768 7.979115 TTATGGTTCTTGAGTTTTTGTTTCG 57.021 32.000 0.00 0.00 0.00 3.46
1679 1783 9.927324 GTTTTTGTTTCGTTTGTAGTAAACTTC 57.073 29.630 0.00 0.00 33.89 3.01
1681 1785 8.883789 TTTGTTTCGTTTGTAGTAAACTTCAG 57.116 30.769 0.00 0.00 33.89 3.02
1713 1820 1.616159 ACACCAGCCAATACAACACC 58.384 50.000 0.00 0.00 0.00 4.16
1725 1832 2.038387 ACAACACCGAGAGCAACTTT 57.962 45.000 0.00 0.00 0.00 2.66
1736 1843 3.942115 GAGAGCAACTTTAATGGGAGGAC 59.058 47.826 0.00 0.00 0.00 3.85
1759 1869 0.037697 TGTCCGTTTGAGTCATCCGG 60.038 55.000 19.68 19.68 39.98 5.14
1792 1902 3.281332 CCAACGGGGTGATCCAAAT 57.719 52.632 0.00 0.00 37.22 2.32
1804 1914 1.669760 TCCAAATGGACGTCCGTGC 60.670 57.895 29.51 6.32 39.78 5.34
1821 1931 4.379243 CCCGCCTGCTGTTCGTCT 62.379 66.667 0.00 0.00 0.00 4.18
1836 1946 1.812686 CGTCTCCGACCCAAACCTGA 61.813 60.000 0.00 0.00 35.63 3.86
1848 1958 2.490718 CCAAACCTGACCCAAATCTGGA 60.491 50.000 5.78 0.00 46.92 3.86
1877 1987 1.005294 GTACGAAGCGGACGAAAGCA 61.005 55.000 7.16 0.00 28.66 3.91
1937 2047 1.744320 CGGGTCCCATATGTCAGCGA 61.744 60.000 9.12 0.00 0.00 4.93
1943 2053 1.541889 CCCATATGTCAGCGACTGCAT 60.542 52.381 1.24 15.13 46.23 3.96
1980 2090 1.438814 CATTGCGATTTCTGCCCCC 59.561 57.895 0.00 0.00 0.00 5.40
2038 2148 4.813526 CCGCTCCTCGACGACGTG 62.814 72.222 4.58 4.71 41.67 4.49
2039 2149 4.086178 CGCTCCTCGACGACGTGT 62.086 66.667 4.58 0.00 41.67 4.49
2198 2376 4.008933 GCACGAGCAGAGGGTGGT 62.009 66.667 0.00 0.00 41.58 4.16
2204 2382 3.368571 GCAGAGGGTGGTTGCAGC 61.369 66.667 0.00 0.00 37.75 5.25
2207 2385 2.149383 AGAGGGTGGTTGCAGCAGA 61.149 57.895 2.05 0.00 0.00 4.26
2286 2464 0.030908 GGCGTGAGGGAGATAGAACG 59.969 60.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.006027 GCTTGACATCTTCAAAAATTGTAAAGC 58.994 33.333 7.48 7.48 43.90 3.51
2 3 8.203485 AGGCTTGACATCTTCAAAAATTGTAAA 58.797 29.630 0.00 0.00 43.90 2.01
5 6 6.165700 AGGCTTGACATCTTCAAAAATTGT 57.834 33.333 0.00 0.00 43.90 2.71
6 7 6.702723 TCAAGGCTTGACATCTTCAAAAATTG 59.297 34.615 25.38 0.00 43.90 2.32
11 12 3.822735 CCTCAAGGCTTGACATCTTCAAA 59.177 43.478 25.38 1.88 43.90 2.69
12 13 3.415212 CCTCAAGGCTTGACATCTTCAA 58.585 45.455 25.38 2.62 42.26 2.69
13 14 3.063510 CCTCAAGGCTTGACATCTTCA 57.936 47.619 25.38 3.37 35.46 3.02
26 27 3.004106 CACTGAACAAAAGAGCCTCAAGG 59.996 47.826 0.00 0.00 38.53 3.61
27 28 3.629398 ACACTGAACAAAAGAGCCTCAAG 59.371 43.478 0.00 0.00 0.00 3.02
28 29 3.620488 ACACTGAACAAAAGAGCCTCAA 58.380 40.909 0.00 0.00 0.00 3.02
29 30 3.281727 ACACTGAACAAAAGAGCCTCA 57.718 42.857 0.00 0.00 0.00 3.86
30 31 3.793465 GCAACACTGAACAAAAGAGCCTC 60.793 47.826 0.00 0.00 0.00 4.70
31 32 2.099756 GCAACACTGAACAAAAGAGCCT 59.900 45.455 0.00 0.00 0.00 4.58
32 33 2.159254 TGCAACACTGAACAAAAGAGCC 60.159 45.455 0.00 0.00 0.00 4.70
33 34 2.854185 GTGCAACACTGAACAAAAGAGC 59.146 45.455 0.00 0.00 36.32 4.09
34 35 4.095410 TGTGCAACACTGAACAAAAGAG 57.905 40.909 0.00 0.00 45.67 2.85
48 49 0.722469 CGACGCTTGACATGTGCAAC 60.722 55.000 1.15 0.00 37.35 4.17
49 50 1.569003 CGACGCTTGACATGTGCAA 59.431 52.632 1.15 6.81 0.00 4.08
50 51 2.316867 CCGACGCTTGACATGTGCA 61.317 57.895 1.15 0.00 0.00 4.57
51 52 2.227968 GACCGACGCTTGACATGTGC 62.228 60.000 1.15 0.00 0.00 4.57
52 53 1.626654 GGACCGACGCTTGACATGTG 61.627 60.000 1.15 0.62 0.00 3.21
53 54 1.374252 GGACCGACGCTTGACATGT 60.374 57.895 0.00 0.00 0.00 3.21
54 55 0.172578 TAGGACCGACGCTTGACATG 59.827 55.000 0.00 0.00 0.00 3.21
55 56 0.892755 TTAGGACCGACGCTTGACAT 59.107 50.000 0.00 0.00 0.00 3.06
56 57 0.675083 TTTAGGACCGACGCTTGACA 59.325 50.000 0.00 0.00 0.00 3.58
57 58 1.725164 CTTTTAGGACCGACGCTTGAC 59.275 52.381 0.00 0.00 0.00 3.18
58 59 1.614903 TCTTTTAGGACCGACGCTTGA 59.385 47.619 0.00 0.00 0.00 3.02
59 60 2.074547 TCTTTTAGGACCGACGCTTG 57.925 50.000 0.00 0.00 0.00 4.01
60 61 2.825861 TTCTTTTAGGACCGACGCTT 57.174 45.000 0.00 0.00 0.00 4.68
61 62 2.298163 TCTTTCTTTTAGGACCGACGCT 59.702 45.455 0.00 0.00 0.00 5.07
62 63 2.680577 TCTTTCTTTTAGGACCGACGC 58.319 47.619 0.00 0.00 0.00 5.19
63 64 4.508861 TGTTTCTTTCTTTTAGGACCGACG 59.491 41.667 0.00 0.00 0.00 5.12
64 65 5.996669 TGTTTCTTTCTTTTAGGACCGAC 57.003 39.130 0.00 0.00 0.00 4.79
65 66 6.117488 AGTTGTTTCTTTCTTTTAGGACCGA 58.883 36.000 0.00 0.00 0.00 4.69
66 67 6.373186 AGTTGTTTCTTTCTTTTAGGACCG 57.627 37.500 0.00 0.00 0.00 4.79
96 97 9.875691 GTGCATATGTACATATTATCTTCCAGA 57.124 33.333 23.03 0.00 31.98 3.86
97 98 9.657419 TGTGCATATGTACATATTATCTTCCAG 57.343 33.333 23.03 11.36 35.76 3.86
110 111 7.446001 TGTTTCAAGAATGTGCATATGTACA 57.554 32.000 25.82 25.82 44.32 2.90
111 112 8.023128 AGTTGTTTCAAGAATGTGCATATGTAC 58.977 33.333 16.19 16.19 0.00 2.90
112 113 8.109705 AGTTGTTTCAAGAATGTGCATATGTA 57.890 30.769 4.29 0.00 0.00 2.29
113 114 6.985117 AGTTGTTTCAAGAATGTGCATATGT 58.015 32.000 4.29 0.00 0.00 2.29
114 115 7.878477 AAGTTGTTTCAAGAATGTGCATATG 57.122 32.000 0.00 0.00 0.00 1.78
115 116 9.630098 CTAAAGTTGTTTCAAGAATGTGCATAT 57.370 29.630 0.00 0.00 0.00 1.78
116 117 8.629158 ACTAAAGTTGTTTCAAGAATGTGCATA 58.371 29.630 0.00 0.00 0.00 3.14
117 118 7.491682 ACTAAAGTTGTTTCAAGAATGTGCAT 58.508 30.769 0.00 0.00 0.00 3.96
118 119 6.862209 ACTAAAGTTGTTTCAAGAATGTGCA 58.138 32.000 0.00 0.00 0.00 4.57
119 120 9.118236 GATACTAAAGTTGTTTCAAGAATGTGC 57.882 33.333 0.00 0.00 0.00 4.57
173 174 9.665719 CCATAAATAACCTTTACTTGCCAAAAT 57.334 29.630 0.00 0.00 0.00 1.82
174 175 8.652290 ACCATAAATAACCTTTACTTGCCAAAA 58.348 29.630 0.00 0.00 0.00 2.44
175 176 8.196378 ACCATAAATAACCTTTACTTGCCAAA 57.804 30.769 0.00 0.00 0.00 3.28
176 177 7.093684 GGACCATAAATAACCTTTACTTGCCAA 60.094 37.037 0.00 0.00 0.00 4.52
177 178 6.378848 GGACCATAAATAACCTTTACTTGCCA 59.621 38.462 0.00 0.00 0.00 4.92
178 179 6.378848 TGGACCATAAATAACCTTTACTTGCC 59.621 38.462 0.00 0.00 0.00 4.52
179 180 7.094118 TGTGGACCATAAATAACCTTTACTTGC 60.094 37.037 0.00 0.00 0.00 4.01
180 181 8.343168 TGTGGACCATAAATAACCTTTACTTG 57.657 34.615 0.00 0.00 0.00 3.16
181 182 9.541884 AATGTGGACCATAAATAACCTTTACTT 57.458 29.630 0.00 0.00 31.97 2.24
182 183 9.541884 AAATGTGGACCATAAATAACCTTTACT 57.458 29.630 0.00 0.00 31.97 2.24
185 186 9.541884 AGTAAATGTGGACCATAAATAACCTTT 57.458 29.630 0.00 0.00 31.97 3.11
186 187 9.541884 AAGTAAATGTGGACCATAAATAACCTT 57.458 29.630 0.00 0.00 31.97 3.50
187 188 9.541884 AAAGTAAATGTGGACCATAAATAACCT 57.458 29.630 0.00 0.00 31.97 3.50
195 196 9.357161 ACTTACAAAAAGTAAATGTGGACCATA 57.643 29.630 0.00 0.00 41.89 2.74
196 197 8.245195 ACTTACAAAAAGTAAATGTGGACCAT 57.755 30.769 0.00 0.00 41.89 3.55
197 198 7.648039 ACTTACAAAAAGTAAATGTGGACCA 57.352 32.000 0.00 0.00 41.89 4.02
198 199 8.192110 TCAACTTACAAAAAGTAAATGTGGACC 58.808 33.333 0.00 0.00 41.89 4.46
199 200 9.233232 CTCAACTTACAAAAAGTAAATGTGGAC 57.767 33.333 0.00 0.00 41.89 4.02
200 201 9.179909 TCTCAACTTACAAAAAGTAAATGTGGA 57.820 29.630 0.00 0.00 41.89 4.02
201 202 9.965824 ATCTCAACTTACAAAAAGTAAATGTGG 57.034 29.630 0.00 0.00 41.89 4.17
233 234 8.093927 GGGAATAATCACAACTTCATCCAAAAA 58.906 33.333 0.00 0.00 0.00 1.94
234 235 7.234371 TGGGAATAATCACAACTTCATCCAAAA 59.766 33.333 0.00 0.00 35.57 2.44
235 236 6.723515 TGGGAATAATCACAACTTCATCCAAA 59.276 34.615 0.00 0.00 35.57 3.28
236 237 6.152661 GTGGGAATAATCACAACTTCATCCAA 59.847 38.462 0.00 0.00 41.66 3.53
237 238 5.652014 GTGGGAATAATCACAACTTCATCCA 59.348 40.000 0.00 0.00 41.66 3.41
238 239 5.652014 TGTGGGAATAATCACAACTTCATCC 59.348 40.000 0.00 0.00 41.66 3.51
239 240 6.757897 TGTGGGAATAATCACAACTTCATC 57.242 37.500 0.00 0.00 41.66 2.92
308 309 8.881262 ACCGTCCTAGGAAGAAAATATATCAAT 58.119 33.333 24.51 0.00 34.73 2.57
309 310 8.258850 ACCGTCCTAGGAAGAAAATATATCAA 57.741 34.615 24.51 0.00 34.73 2.57
310 311 7.850935 ACCGTCCTAGGAAGAAAATATATCA 57.149 36.000 24.51 0.00 34.73 2.15
311 312 8.365647 TCAACCGTCCTAGGAAGAAAATATATC 58.634 37.037 24.51 2.11 34.73 1.63
312 313 8.258850 TCAACCGTCCTAGGAAGAAAATATAT 57.741 34.615 24.51 0.60 34.73 0.86
313 314 7.664552 TCAACCGTCCTAGGAAGAAAATATA 57.335 36.000 24.51 2.33 34.73 0.86
314 315 6.555463 TCAACCGTCCTAGGAAGAAAATAT 57.445 37.500 24.51 2.83 34.73 1.28
315 316 6.555463 ATCAACCGTCCTAGGAAGAAAATA 57.445 37.500 24.51 7.56 34.73 1.40
316 317 4.903045 TCAACCGTCCTAGGAAGAAAAT 57.097 40.909 24.51 5.73 34.73 1.82
317 318 4.903045 ATCAACCGTCCTAGGAAGAAAA 57.097 40.909 24.51 8.53 34.73 2.29
318 319 6.363167 TTTATCAACCGTCCTAGGAAGAAA 57.637 37.500 24.51 13.18 34.73 2.52
319 320 6.363167 TTTTATCAACCGTCCTAGGAAGAA 57.637 37.500 24.51 8.06 34.73 2.52
320 321 6.168389 GTTTTTATCAACCGTCCTAGGAAGA 58.832 40.000 24.51 12.70 34.73 2.87
321 322 5.935789 TGTTTTTATCAACCGTCCTAGGAAG 59.064 40.000 14.65 16.02 34.73 3.46
322 323 5.867330 TGTTTTTATCAACCGTCCTAGGAA 58.133 37.500 14.65 0.00 34.73 3.36
323 324 5.486735 TGTTTTTATCAACCGTCCTAGGA 57.513 39.130 7.62 7.62 34.73 2.94
324 325 7.201670 GGTTATGTTTTTATCAACCGTCCTAGG 60.202 40.741 0.82 0.82 37.30 3.02
325 326 7.334921 TGGTTATGTTTTTATCAACCGTCCTAG 59.665 37.037 0.00 0.00 41.27 3.02
326 327 7.166851 TGGTTATGTTTTTATCAACCGTCCTA 58.833 34.615 0.00 0.00 41.27 2.94
327 328 6.005198 TGGTTATGTTTTTATCAACCGTCCT 58.995 36.000 0.00 0.00 41.27 3.85
328 329 6.256912 TGGTTATGTTTTTATCAACCGTCC 57.743 37.500 0.00 0.00 41.27 4.79
329 330 7.531716 TCATGGTTATGTTTTTATCAACCGTC 58.468 34.615 0.00 0.00 41.27 4.79
330 331 7.455641 TCATGGTTATGTTTTTATCAACCGT 57.544 32.000 0.00 0.00 41.27 4.83
338 339 9.938670 GCACGTATTATCATGGTTATGTTTTTA 57.061 29.630 0.00 0.00 35.73 1.52
339 340 7.642194 CGCACGTATTATCATGGTTATGTTTTT 59.358 33.333 0.00 0.00 35.73 1.94
340 341 7.129622 CGCACGTATTATCATGGTTATGTTTT 58.870 34.615 0.00 0.00 35.73 2.43
341 342 6.259167 ACGCACGTATTATCATGGTTATGTTT 59.741 34.615 0.00 0.00 35.73 2.83
342 343 5.756347 ACGCACGTATTATCATGGTTATGTT 59.244 36.000 0.00 0.00 35.73 2.71
343 344 5.294356 ACGCACGTATTATCATGGTTATGT 58.706 37.500 0.00 0.00 35.73 2.29
344 345 5.839262 ACGCACGTATTATCATGGTTATG 57.161 39.130 0.00 0.00 35.57 1.90
345 346 5.333798 GCAACGCACGTATTATCATGGTTAT 60.334 40.000 0.00 0.00 0.00 1.89
346 347 4.025563 GCAACGCACGTATTATCATGGTTA 60.026 41.667 0.00 0.00 0.00 2.85
347 348 3.242608 GCAACGCACGTATTATCATGGTT 60.243 43.478 0.00 0.00 0.00 3.67
348 349 2.286833 GCAACGCACGTATTATCATGGT 59.713 45.455 0.00 0.00 0.00 3.55
349 350 2.286563 TGCAACGCACGTATTATCATGG 59.713 45.455 0.00 0.00 31.71 3.66
350 351 3.584095 TGCAACGCACGTATTATCATG 57.416 42.857 0.00 0.00 31.71 3.07
368 369 3.924686 AGTACTAGTAAACATGCACGTGC 59.075 43.478 33.11 33.11 42.50 5.34
369 370 6.320171 ACTAGTACTAGTAAACATGCACGTG 58.680 40.000 29.96 12.28 43.98 4.49
370 371 6.506500 ACTAGTACTAGTAAACATGCACGT 57.493 37.500 29.96 5.39 43.98 4.49
396 397 9.550406 AGTAACTACAAGTGCACATTTTAGTTA 57.450 29.630 24.73 24.73 32.16 2.24
397 398 8.446599 AGTAACTACAAGTGCACATTTTAGTT 57.553 30.769 25.92 25.92 33.85 2.24
398 399 9.204570 CTAGTAACTACAAGTGCACATTTTAGT 57.795 33.333 21.04 17.68 0.00 2.24
399 400 9.419297 TCTAGTAACTACAAGTGCACATTTTAG 57.581 33.333 21.04 17.11 0.00 1.85
400 401 9.767228 TTCTAGTAACTACAAGTGCACATTTTA 57.233 29.630 21.04 7.10 0.00 1.52
401 402 8.671384 TTCTAGTAACTACAAGTGCACATTTT 57.329 30.769 21.04 1.11 0.00 1.82
402 403 8.148351 TCTTCTAGTAACTACAAGTGCACATTT 58.852 33.333 21.04 2.15 0.00 2.32
403 404 7.667557 TCTTCTAGTAACTACAAGTGCACATT 58.332 34.615 21.04 7.66 0.00 2.71
404 405 7.039644 ACTCTTCTAGTAACTACAAGTGCACAT 60.040 37.037 21.04 3.48 36.36 3.21
405 406 6.264744 ACTCTTCTAGTAACTACAAGTGCACA 59.735 38.462 21.04 0.00 36.36 4.57
406 407 6.679843 ACTCTTCTAGTAACTACAAGTGCAC 58.320 40.000 9.40 9.40 36.36 4.57
407 408 6.896021 ACTCTTCTAGTAACTACAAGTGCA 57.104 37.500 0.00 0.00 36.36 4.57
408 409 7.485595 GCTAACTCTTCTAGTAACTACAAGTGC 59.514 40.741 0.00 0.00 37.50 4.40
409 410 8.732531 AGCTAACTCTTCTAGTAACTACAAGTG 58.267 37.037 0.00 0.00 37.50 3.16
410 411 8.866970 AGCTAACTCTTCTAGTAACTACAAGT 57.133 34.615 0.00 0.00 37.50 3.16
413 414 9.956640 ACTTAGCTAACTCTTCTAGTAACTACA 57.043 33.333 0.86 0.00 37.50 2.74
441 442 8.881262 AGGTTTATGTAATAAGTATGCTAGGCT 58.119 33.333 0.00 0.00 40.40 4.58
442 443 8.936864 CAGGTTTATGTAATAAGTATGCTAGGC 58.063 37.037 0.00 0.00 40.40 3.93
446 447 7.661847 GCCTCAGGTTTATGTAATAAGTATGCT 59.338 37.037 0.00 0.00 40.40 3.79
447 448 7.661847 AGCCTCAGGTTTATGTAATAAGTATGC 59.338 37.037 0.00 0.00 40.40 3.14
450 451 8.645110 GGTAGCCTCAGGTTTATGTAATAAGTA 58.355 37.037 0.00 0.00 40.40 2.24
451 452 7.506971 GGTAGCCTCAGGTTTATGTAATAAGT 58.493 38.462 0.00 0.00 40.40 2.24
452 453 6.645415 CGGTAGCCTCAGGTTTATGTAATAAG 59.355 42.308 0.00 0.00 40.40 1.73
453 454 6.098695 ACGGTAGCCTCAGGTTTATGTAATAA 59.901 38.462 0.00 0.00 36.92 1.40
454 455 5.599656 ACGGTAGCCTCAGGTTTATGTAATA 59.400 40.000 0.00 0.00 0.00 0.98
455 456 4.407945 ACGGTAGCCTCAGGTTTATGTAAT 59.592 41.667 0.00 0.00 0.00 1.89
456 457 3.770933 ACGGTAGCCTCAGGTTTATGTAA 59.229 43.478 0.00 0.00 0.00 2.41
457 458 3.368248 ACGGTAGCCTCAGGTTTATGTA 58.632 45.455 0.00 0.00 0.00 2.29
458 459 2.185387 ACGGTAGCCTCAGGTTTATGT 58.815 47.619 0.00 0.00 0.00 2.29
459 460 2.981859 ACGGTAGCCTCAGGTTTATG 57.018 50.000 0.00 0.00 0.00 1.90
460 461 2.697229 GGTACGGTAGCCTCAGGTTTAT 59.303 50.000 6.08 0.00 0.00 1.40
461 462 2.102578 GGTACGGTAGCCTCAGGTTTA 58.897 52.381 6.08 0.00 0.00 2.01
462 463 0.900421 GGTACGGTAGCCTCAGGTTT 59.100 55.000 6.08 0.00 0.00 3.27
463 464 0.040794 AGGTACGGTAGCCTCAGGTT 59.959 55.000 13.34 0.00 0.00 3.50
464 465 0.921896 TAGGTACGGTAGCCTCAGGT 59.078 55.000 13.34 0.00 36.38 4.00
465 466 1.606903 CTAGGTACGGTAGCCTCAGG 58.393 60.000 13.34 0.00 36.38 3.86
466 467 0.953003 GCTAGGTACGGTAGCCTCAG 59.047 60.000 13.34 9.57 37.52 3.35
467 468 3.106738 GCTAGGTACGGTAGCCTCA 57.893 57.895 13.34 0.00 37.52 3.86
471 472 0.754587 ACAGGGCTAGGTACGGTAGC 60.755 60.000 14.61 14.61 41.96 3.58
472 473 1.772836 AACAGGGCTAGGTACGGTAG 58.227 55.000 0.00 0.00 0.00 3.18
473 474 2.936202 CTAACAGGGCTAGGTACGGTA 58.064 52.381 0.00 0.00 0.00 4.02
474 475 1.772836 CTAACAGGGCTAGGTACGGT 58.227 55.000 0.00 0.00 0.00 4.83
475 476 0.388294 GCTAACAGGGCTAGGTACGG 59.612 60.000 0.00 0.00 0.00 4.02
476 477 1.337387 GAGCTAACAGGGCTAGGTACG 59.663 57.143 0.00 0.00 40.40 3.67
477 478 2.668625 AGAGCTAACAGGGCTAGGTAC 58.331 52.381 0.00 0.00 40.40 3.34
478 479 4.743705 ATAGAGCTAACAGGGCTAGGTA 57.256 45.455 0.00 0.00 40.40 3.08
479 480 3.621682 ATAGAGCTAACAGGGCTAGGT 57.378 47.619 0.00 0.00 40.40 3.08
480 481 4.142049 GCATATAGAGCTAACAGGGCTAGG 60.142 50.000 0.00 0.00 40.40 3.02
486 487 6.749139 TGTTACTGCATATAGAGCTAACAGG 58.251 40.000 9.09 0.00 0.00 4.00
489 490 7.360438 GGCATTGTTACTGCATATAGAGCTAAC 60.360 40.741 0.00 4.25 41.47 2.34
520 523 3.826466 CGCAGAAAGATTTTCAAGGACC 58.174 45.455 4.56 0.00 0.00 4.46
557 560 1.718280 AAGGATAGAACCCCCTAGCG 58.282 55.000 0.00 0.00 0.00 4.26
558 561 4.906060 TCTTTAAGGATAGAACCCCCTAGC 59.094 45.833 0.00 0.00 0.00 3.42
559 562 6.013293 CCATCTTTAAGGATAGAACCCCCTAG 60.013 46.154 0.00 0.00 0.00 3.02
560 563 5.850028 CCATCTTTAAGGATAGAACCCCCTA 59.150 44.000 0.00 0.00 0.00 3.53
561 564 4.665483 CCATCTTTAAGGATAGAACCCCCT 59.335 45.833 0.00 0.00 0.00 4.79
562 565 4.663592 TCCATCTTTAAGGATAGAACCCCC 59.336 45.833 0.00 0.00 0.00 5.40
563 566 5.906772 TCCATCTTTAAGGATAGAACCCC 57.093 43.478 0.00 0.00 0.00 4.95
564 567 6.901300 ACTTCCATCTTTAAGGATAGAACCC 58.099 40.000 4.68 0.00 33.10 4.11
565 568 7.565680 TGACTTCCATCTTTAAGGATAGAACC 58.434 38.462 4.68 2.08 33.10 3.62
583 586 3.614092 TGGATCTGCAGAAATGACTTCC 58.386 45.455 22.50 20.47 34.21 3.46
620 623 0.738975 CCATGGAGTTGCTCATGCTG 59.261 55.000 5.56 0.00 40.48 4.41
625 634 1.545428 GGTTGACCATGGAGTTGCTCA 60.545 52.381 21.47 7.65 35.64 4.26
656 665 4.083537 TGGATCGTTTTGACTTGCATGTAC 60.084 41.667 5.05 0.00 0.00 2.90
672 681 1.019278 GTGTGCCATCGTTGGATCGT 61.019 55.000 16.83 0.00 46.92 3.73
722 731 1.512926 CGCTTTCCACTTGTGCTACT 58.487 50.000 0.00 0.00 0.00 2.57
723 732 0.110192 GCGCTTTCCACTTGTGCTAC 60.110 55.000 0.00 0.00 34.76 3.58
780 789 3.032033 GCTGTGTTGCTTTGCCGC 61.032 61.111 0.00 0.00 0.00 6.53
847 856 7.762615 TGAGATTATTTTTACCTGGTCGTGTAG 59.237 37.037 0.63 0.00 0.00 2.74
934 950 1.550976 TGTGTGTGTGTGTGGTGTCTA 59.449 47.619 0.00 0.00 0.00 2.59
960 1014 1.099689 CAACAAACGAGGGGTGTTGT 58.900 50.000 7.44 0.00 44.51 3.32
1034 1101 4.954970 CCACCTTGGCCAGCGTGT 62.955 66.667 24.70 11.68 0.00 4.49
1137 1235 1.880340 CATCGACCGGAAGCTCAGC 60.880 63.158 9.46 0.00 0.00 4.26
1188 1286 3.458163 GACGGGCACATCGGAGGA 61.458 66.667 0.00 0.00 0.00 3.71
1189 1287 4.873129 CGACGGGCACATCGGAGG 62.873 72.222 0.00 0.00 35.31 4.30
1269 1368 1.747355 CCAAGCAATTCAATCCTCGCT 59.253 47.619 0.00 0.00 0.00 4.93
1331 1430 1.068588 TCCACGACAACTCAGAACAGG 59.931 52.381 0.00 0.00 0.00 4.00
1358 1457 1.135344 GTAGTGACTCCGAACAGAGCC 60.135 57.143 0.00 0.00 37.39 4.70
1359 1458 1.540267 TGTAGTGACTCCGAACAGAGC 59.460 52.381 0.00 0.00 37.39 4.09
1360 1459 3.253677 AGTTGTAGTGACTCCGAACAGAG 59.746 47.826 0.00 0.00 39.91 3.35
1361 1460 3.220110 AGTTGTAGTGACTCCGAACAGA 58.780 45.455 0.00 0.00 0.00 3.41
1362 1461 3.566523 GAGTTGTAGTGACTCCGAACAG 58.433 50.000 0.00 0.00 38.02 3.16
1363 1462 3.637998 GAGTTGTAGTGACTCCGAACA 57.362 47.619 0.00 0.00 38.02 3.18
1369 1468 8.025445 TCGTATTTTTAGGAGTTGTAGTGACTC 58.975 37.037 0.00 0.00 42.16 3.36
1370 1469 7.889469 TCGTATTTTTAGGAGTTGTAGTGACT 58.111 34.615 0.00 0.00 0.00 3.41
1371 1470 8.592998 CATCGTATTTTTAGGAGTTGTAGTGAC 58.407 37.037 0.00 0.00 0.00 3.67
1372 1471 8.525316 TCATCGTATTTTTAGGAGTTGTAGTGA 58.475 33.333 0.00 0.00 0.00 3.41
1373 1472 8.697846 TCATCGTATTTTTAGGAGTTGTAGTG 57.302 34.615 0.00 0.00 0.00 2.74
1374 1473 7.491696 GCTCATCGTATTTTTAGGAGTTGTAGT 59.508 37.037 0.00 0.00 0.00 2.73
1375 1474 7.707035 AGCTCATCGTATTTTTAGGAGTTGTAG 59.293 37.037 0.00 0.00 0.00 2.74
1376 1475 7.491372 CAGCTCATCGTATTTTTAGGAGTTGTA 59.509 37.037 0.00 0.00 30.64 2.41
1377 1476 6.313905 CAGCTCATCGTATTTTTAGGAGTTGT 59.686 38.462 0.00 0.00 30.64 3.32
1378 1477 6.709643 CAGCTCATCGTATTTTTAGGAGTTG 58.290 40.000 0.00 0.00 0.00 3.16
1379 1478 5.294552 GCAGCTCATCGTATTTTTAGGAGTT 59.705 40.000 0.00 0.00 0.00 3.01
1380 1479 4.811557 GCAGCTCATCGTATTTTTAGGAGT 59.188 41.667 0.00 0.00 0.00 3.85
1381 1480 4.084849 CGCAGCTCATCGTATTTTTAGGAG 60.085 45.833 0.00 0.00 0.00 3.69
1382 1481 3.802139 CGCAGCTCATCGTATTTTTAGGA 59.198 43.478 0.00 0.00 0.00 2.94
1383 1482 3.059597 CCGCAGCTCATCGTATTTTTAGG 60.060 47.826 0.00 0.00 0.00 2.69
1384 1483 3.802139 TCCGCAGCTCATCGTATTTTTAG 59.198 43.478 0.00 0.00 0.00 1.85
1385 1484 3.787785 TCCGCAGCTCATCGTATTTTTA 58.212 40.909 0.00 0.00 0.00 1.52
1386 1485 2.609459 CTCCGCAGCTCATCGTATTTTT 59.391 45.455 0.00 0.00 0.00 1.94
1387 1486 2.205074 CTCCGCAGCTCATCGTATTTT 58.795 47.619 0.00 0.00 0.00 1.82
1388 1487 1.858091 CTCCGCAGCTCATCGTATTT 58.142 50.000 0.00 0.00 0.00 1.40
1389 1488 0.598680 GCTCCGCAGCTCATCGTATT 60.599 55.000 0.00 0.00 43.09 1.89
1390 1489 1.006805 GCTCCGCAGCTCATCGTAT 60.007 57.895 0.00 0.00 43.09 3.06
1391 1490 2.413351 GCTCCGCAGCTCATCGTA 59.587 61.111 0.00 0.00 43.09 3.43
1400 1499 1.746991 GGAAAGGGAAGCTCCGCAG 60.747 63.158 0.00 0.00 37.43 5.18
1401 1500 2.351276 GGAAAGGGAAGCTCCGCA 59.649 61.111 0.00 0.00 37.43 5.69
1402 1501 2.438614 GGGAAAGGGAAGCTCCGC 60.439 66.667 0.00 0.00 37.43 5.54
1403 1502 0.960861 GTTGGGAAAGGGAAGCTCCG 60.961 60.000 0.00 0.00 37.43 4.63
1404 1503 0.405973 AGTTGGGAAAGGGAAGCTCC 59.594 55.000 0.00 0.00 35.23 4.70
1405 1504 1.614583 GGAGTTGGGAAAGGGAAGCTC 60.615 57.143 0.00 0.00 0.00 4.09
1406 1505 0.405973 GGAGTTGGGAAAGGGAAGCT 59.594 55.000 0.00 0.00 0.00 3.74
1407 1506 0.112412 TGGAGTTGGGAAAGGGAAGC 59.888 55.000 0.00 0.00 0.00 3.86
1408 1507 2.450476 CATGGAGTTGGGAAAGGGAAG 58.550 52.381 0.00 0.00 0.00 3.46
1409 1508 1.549950 GCATGGAGTTGGGAAAGGGAA 60.550 52.381 0.00 0.00 0.00 3.97
1410 1509 0.039618 GCATGGAGTTGGGAAAGGGA 59.960 55.000 0.00 0.00 0.00 4.20
1411 1510 0.040204 AGCATGGAGTTGGGAAAGGG 59.960 55.000 0.00 0.00 0.00 3.95
1412 1511 1.928868 AAGCATGGAGTTGGGAAAGG 58.071 50.000 0.00 0.00 0.00 3.11
1413 1512 4.341366 AAAAAGCATGGAGTTGGGAAAG 57.659 40.909 0.00 0.00 0.00 2.62
1441 1540 0.902048 TCACTCCACTCCCAGAGCTG 60.902 60.000 0.00 0.00 33.18 4.24
1442 1541 0.042431 ATCACTCCACTCCCAGAGCT 59.958 55.000 0.00 0.00 33.18 4.09
1443 1542 0.177604 CATCACTCCACTCCCAGAGC 59.822 60.000 0.00 0.00 33.18 4.09
1444 1543 0.829333 CCATCACTCCACTCCCAGAG 59.171 60.000 0.00 0.00 36.16 3.35
1445 1544 0.413434 TCCATCACTCCACTCCCAGA 59.587 55.000 0.00 0.00 0.00 3.86
1446 1545 0.829333 CTCCATCACTCCACTCCCAG 59.171 60.000 0.00 0.00 0.00 4.45
1447 1546 0.117140 ACTCCATCACTCCACTCCCA 59.883 55.000 0.00 0.00 0.00 4.37
1448 1547 0.539051 CACTCCATCACTCCACTCCC 59.461 60.000 0.00 0.00 0.00 4.30
1449 1548 0.539051 CCACTCCATCACTCCACTCC 59.461 60.000 0.00 0.00 0.00 3.85
1450 1549 1.480137 CTCCACTCCATCACTCCACTC 59.520 57.143 0.00 0.00 0.00 3.51
1451 1550 1.566211 CTCCACTCCATCACTCCACT 58.434 55.000 0.00 0.00 0.00 4.00
1452 1551 0.539051 CCTCCACTCCATCACTCCAC 59.461 60.000 0.00 0.00 0.00 4.02
1453 1552 0.618680 CCCTCCACTCCATCACTCCA 60.619 60.000 0.00 0.00 0.00 3.86
1454 1553 0.618968 ACCCTCCACTCCATCACTCC 60.619 60.000 0.00 0.00 0.00 3.85
1455 1554 0.827368 GACCCTCCACTCCATCACTC 59.173 60.000 0.00 0.00 0.00 3.51
1456 1555 0.415429 AGACCCTCCACTCCATCACT 59.585 55.000 0.00 0.00 0.00 3.41
1457 1556 0.827368 GAGACCCTCCACTCCATCAC 59.173 60.000 0.00 0.00 0.00 3.06
1458 1557 3.306902 GAGACCCTCCACTCCATCA 57.693 57.895 0.00 0.00 0.00 3.07
1467 1566 1.192803 AACCTGTTCGGAGACCCTCC 61.193 60.000 2.97 2.97 46.44 4.30
1468 1567 0.246910 GAACCTGTTCGGAGACCCTC 59.753 60.000 0.00 0.00 34.32 4.30
1469 1568 0.178929 AGAACCTGTTCGGAGACCCT 60.179 55.000 4.49 0.00 43.97 4.34
1470 1569 0.685660 AAGAACCTGTTCGGAGACCC 59.314 55.000 4.49 0.00 43.97 4.46
1471 1570 3.889520 ATAAGAACCTGTTCGGAGACC 57.110 47.619 4.49 0.00 43.97 3.85
1472 1571 4.389077 CACAATAAGAACCTGTTCGGAGAC 59.611 45.833 4.49 0.00 43.97 3.36
1473 1572 4.562757 CCACAATAAGAACCTGTTCGGAGA 60.563 45.833 4.49 0.00 43.97 3.71
1474 1573 3.684788 CCACAATAAGAACCTGTTCGGAG 59.315 47.826 4.49 0.00 43.97 4.63
1475 1574 3.325425 TCCACAATAAGAACCTGTTCGGA 59.675 43.478 4.49 1.34 43.97 4.55
1476 1575 3.670625 TCCACAATAAGAACCTGTTCGG 58.329 45.455 4.49 0.00 43.97 4.30
1477 1576 5.880054 AATCCACAATAAGAACCTGTTCG 57.120 39.130 4.49 0.00 43.97 3.95
1478 1577 6.863126 CACAAATCCACAATAAGAACCTGTTC 59.137 38.462 1.75 1.75 39.78 3.18
1479 1578 6.239289 CCACAAATCCACAATAAGAACCTGTT 60.239 38.462 0.00 0.00 0.00 3.16
1480 1579 5.243730 CCACAAATCCACAATAAGAACCTGT 59.756 40.000 0.00 0.00 0.00 4.00
1481 1580 5.243730 ACCACAAATCCACAATAAGAACCTG 59.756 40.000 0.00 0.00 0.00 4.00
1482 1581 5.393866 ACCACAAATCCACAATAAGAACCT 58.606 37.500 0.00 0.00 0.00 3.50
1483 1582 5.722021 ACCACAAATCCACAATAAGAACC 57.278 39.130 0.00 0.00 0.00 3.62
1484 1583 6.744112 TCAACCACAAATCCACAATAAGAAC 58.256 36.000 0.00 0.00 0.00 3.01
1485 1584 6.775142 TCTCAACCACAAATCCACAATAAGAA 59.225 34.615 0.00 0.00 0.00 2.52
1486 1585 6.303054 TCTCAACCACAAATCCACAATAAGA 58.697 36.000 0.00 0.00 0.00 2.10
1487 1586 6.573664 TCTCAACCACAAATCCACAATAAG 57.426 37.500 0.00 0.00 0.00 1.73
1488 1587 6.947733 AGATCTCAACCACAAATCCACAATAA 59.052 34.615 0.00 0.00 0.00 1.40
1489 1588 6.375174 CAGATCTCAACCACAAATCCACAATA 59.625 38.462 0.00 0.00 0.00 1.90
1490 1589 5.184479 CAGATCTCAACCACAAATCCACAAT 59.816 40.000 0.00 0.00 0.00 2.71
1491 1590 4.520111 CAGATCTCAACCACAAATCCACAA 59.480 41.667 0.00 0.00 0.00 3.33
1492 1591 4.074259 CAGATCTCAACCACAAATCCACA 58.926 43.478 0.00 0.00 0.00 4.17
1493 1592 4.326826 TCAGATCTCAACCACAAATCCAC 58.673 43.478 0.00 0.00 0.00 4.02
1494 1593 4.286808 TCTCAGATCTCAACCACAAATCCA 59.713 41.667 0.00 0.00 0.00 3.41
1495 1594 4.836825 TCTCAGATCTCAACCACAAATCC 58.163 43.478 0.00 0.00 0.00 3.01
1496 1595 6.596888 TGATTCTCAGATCTCAACCACAAATC 59.403 38.462 0.00 0.00 0.00 2.17
1497 1596 6.479006 TGATTCTCAGATCTCAACCACAAAT 58.521 36.000 0.00 0.00 0.00 2.32
1498 1597 5.868454 TGATTCTCAGATCTCAACCACAAA 58.132 37.500 0.00 0.00 0.00 2.83
1512 1611 8.461249 AATGGGAGTTCAAATATGATTCTCAG 57.539 34.615 11.02 0.00 38.00 3.35
1660 1764 7.201635 GGGAACTGAAGTTTACTACAAACGAAA 60.202 37.037 0.00 0.00 38.56 3.46
1664 1768 5.049886 CCGGGAACTGAAGTTTACTACAAAC 60.050 44.000 0.00 0.00 38.56 2.93
1679 1783 3.267483 CTGGTGTATTAACCGGGAACTG 58.733 50.000 6.32 0.00 43.73 3.16
1681 1785 2.011947 GCTGGTGTATTAACCGGGAAC 58.988 52.381 6.32 0.00 45.40 3.62
1713 1820 2.939103 CCTCCCATTAAAGTTGCTCTCG 59.061 50.000 0.00 0.00 0.00 4.04
1736 1843 2.076863 GATGACTCAAACGGACAAGGG 58.923 52.381 0.00 0.00 0.00 3.95
1750 1860 3.703001 ACATTTTCTGTCCGGATGACT 57.297 42.857 7.81 0.00 44.75 3.41
1786 1896 1.669760 GCACGGACGTCCATTTGGA 60.670 57.895 32.80 0.00 43.08 3.53
1804 1914 4.379243 AGACGAACAGCAGGCGGG 62.379 66.667 0.00 0.00 0.00 6.13
1821 1931 2.522367 GGGTCAGGTTTGGGTCGGA 61.522 63.158 0.00 0.00 0.00 4.55
1836 1946 3.327464 CCCATTTGTTTCCAGATTTGGGT 59.673 43.478 1.81 0.00 45.10 4.51
1848 1958 1.538075 CCGCTTCGTACCCATTTGTTT 59.462 47.619 0.00 0.00 0.00 2.83
1919 2029 0.249911 GTCGCTGACATATGGGACCC 60.250 60.000 2.45 2.45 39.30 4.46
2183 2361 2.743718 CAACCACCCTCTGCTCGT 59.256 61.111 0.00 0.00 0.00 4.18
2198 2376 4.986645 TCGCGCCTTCTGCTGCAA 62.987 61.111 0.00 0.00 38.74 4.08
2204 2382 2.884685 CTCTGCTCGCGCCTTCTG 60.885 66.667 0.00 0.00 34.43 3.02
2250 2428 2.042435 CGCCCCTTCTCTCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
2252 2430 3.855853 GCCGCCCCTTCTCTCTCC 61.856 72.222 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.