Multiple sequence alignment - TraesCS3B01G331300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G331300 | chr3B | 100.000 | 2309 | 0 | 0 | 1 | 2309 | 536430361 | 536428053 | 0.000000e+00 | 4265.0 |
1 | TraesCS3B01G331300 | chr1D | 100.000 | 388 | 0 | 0 | 1 | 388 | 53254060 | 53253673 | 0.000000e+00 | 717.0 |
2 | TraesCS3B01G331300 | chr1B | 98.201 | 389 | 7 | 0 | 1 | 389 | 110791566 | 110791178 | 0.000000e+00 | 680.0 |
3 | TraesCS3B01G331300 | chr1B | 96.899 | 387 | 11 | 1 | 1 | 386 | 332165870 | 332166256 | 0.000000e+00 | 647.0 |
4 | TraesCS3B01G331300 | chr5B | 97.927 | 386 | 7 | 1 | 1 | 386 | 661528987 | 661528603 | 0.000000e+00 | 667.0 |
5 | TraesCS3B01G331300 | chr3A | 94.750 | 400 | 19 | 2 | 960 | 1358 | 541225928 | 541226326 | 2.520000e-174 | 621.0 |
6 | TraesCS3B01G331300 | chr3A | 94.038 | 369 | 20 | 2 | 573 | 941 | 541225491 | 541225857 | 2.000000e-155 | 558.0 |
7 | TraesCS3B01G331300 | chr3A | 81.596 | 451 | 59 | 15 | 1716 | 2154 | 175810671 | 175811109 | 3.650000e-93 | 351.0 |
8 | TraesCS3B01G331300 | chr3A | 93.182 | 220 | 9 | 3 | 1502 | 1717 | 541226329 | 541226546 | 3.700000e-83 | 318.0 |
9 | TraesCS3B01G331300 | chr3A | 87.931 | 58 | 0 | 6 | 360 | 416 | 491533767 | 491533818 | 6.890000e-06 | 62.1 |
10 | TraesCS3B01G331300 | chr3D | 89.540 | 478 | 23 | 14 | 482 | 944 | 410519168 | 410518703 | 4.280000e-162 | 580.0 |
11 | TraesCS3B01G331300 | chr3D | 94.636 | 261 | 9 | 2 | 1099 | 1358 | 410518478 | 410518222 | 1.290000e-107 | 399.0 |
12 | TraesCS3B01G331300 | chr3D | 93.750 | 192 | 11 | 1 | 942 | 1132 | 410518667 | 410518476 | 1.040000e-73 | 287.0 |
13 | TraesCS3B01G331300 | chr3D | 92.908 | 141 | 6 | 1 | 1500 | 1636 | 410518221 | 410518081 | 3.890000e-48 | 202.0 |
14 | TraesCS3B01G331300 | chr4B | 91.254 | 343 | 11 | 1 | 1 | 343 | 636693376 | 636693699 | 1.260000e-122 | 449.0 |
15 | TraesCS3B01G331300 | chr2B | 85.941 | 441 | 30 | 10 | 1716 | 2150 | 381303486 | 381303900 | 2.110000e-120 | 442.0 |
16 | TraesCS3B01G331300 | chr2B | 94.340 | 265 | 14 | 1 | 2045 | 2309 | 381303885 | 381304148 | 2.760000e-109 | 405.0 |
17 | TraesCS3B01G331300 | chr4A | 80.889 | 450 | 65 | 12 | 1716 | 2154 | 511224705 | 511225144 | 3.680000e-88 | 335.0 |
18 | TraesCS3B01G331300 | chr4A | 89.610 | 231 | 21 | 2 | 1716 | 1943 | 606792165 | 606791935 | 8.070000e-75 | 291.0 |
19 | TraesCS3B01G331300 | chr4A | 88.312 | 231 | 24 | 1 | 1716 | 1943 | 606728385 | 606728155 | 8.130000e-70 | 274.0 |
20 | TraesCS3B01G331300 | chr4A | 85.043 | 234 | 28 | 5 | 1716 | 1943 | 679266338 | 679266106 | 4.960000e-57 | 231.0 |
21 | TraesCS3B01G331300 | chr6B | 83.728 | 338 | 39 | 9 | 1748 | 2085 | 178029722 | 178029401 | 2.880000e-79 | 305.0 |
22 | TraesCS3B01G331300 | chr6B | 80.403 | 347 | 50 | 11 | 985 | 1315 | 619404729 | 619405073 | 4.930000e-62 | 248.0 |
23 | TraesCS3B01G331300 | chr2A | 81.102 | 381 | 51 | 12 | 1716 | 2085 | 645309265 | 645308895 | 3.750000e-73 | 285.0 |
24 | TraesCS3B01G331300 | chr6D | 81.765 | 340 | 49 | 9 | 985 | 1315 | 411767166 | 411767501 | 2.920000e-69 | 272.0 |
25 | TraesCS3B01G331300 | chr1A | 80.966 | 352 | 47 | 14 | 1755 | 2097 | 395477350 | 395477690 | 6.330000e-66 | 261.0 |
26 | TraesCS3B01G331300 | chr2D | 79.747 | 237 | 30 | 13 | 141 | 365 | 534327192 | 534327422 | 3.070000e-34 | 156.0 |
27 | TraesCS3B01G331300 | chr7D | 86.139 | 101 | 13 | 1 | 288 | 388 | 173009022 | 173008923 | 8.720000e-20 | 108.0 |
28 | TraesCS3B01G331300 | chr7B | 82.883 | 111 | 15 | 2 | 279 | 389 | 591142274 | 591142380 | 1.890000e-16 | 97.1 |
29 | TraesCS3B01G331300 | chr7B | 100.000 | 32 | 0 | 0 | 358 | 389 | 605374712 | 605374743 | 2.480000e-05 | 60.2 |
30 | TraesCS3B01G331300 | chr6A | 83.838 | 99 | 14 | 2 | 279 | 376 | 13618014 | 13618111 | 2.440000e-15 | 93.5 |
31 | TraesCS3B01G331300 | chr6A | 84.906 | 53 | 8 | 0 | 360 | 412 | 605779902 | 605779850 | 1.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G331300 | chr3B | 536428053 | 536430361 | 2308 | True | 4265.0 | 4265 | 100.0000 | 1 | 2309 | 1 | chr3B.!!$R1 | 2308 |
1 | TraesCS3B01G331300 | chr3A | 541225491 | 541226546 | 1055 | False | 499.0 | 621 | 93.9900 | 573 | 1717 | 3 | chr3A.!!$F3 | 1144 |
2 | TraesCS3B01G331300 | chr3D | 410518081 | 410519168 | 1087 | True | 367.0 | 580 | 92.7085 | 482 | 1636 | 4 | chr3D.!!$R1 | 1154 |
3 | TraesCS3B01G331300 | chr2B | 381303486 | 381304148 | 662 | False | 423.5 | 442 | 90.1405 | 1716 | 2309 | 2 | chr2B.!!$F1 | 593 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
65 | 66 | 0.0293 | GTGTTGCACATGTCAAGCGT | 59.971 | 50.0 | 0.0 | 0.0 | 34.08 | 5.07 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1410 | 1509 | 0.039618 | GCATGGAGTTGGGAAAGGGA | 59.96 | 55.0 | 0.0 | 0.0 | 0.0 | 4.2 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 8.006027 | GCTTTACAATTTTTGAAGATGTCAAGC | 58.994 | 33.333 | 7.19 | 7.19 | 46.85 | 4.01 |
27 | 28 | 7.945033 | TTACAATTTTTGAAGATGTCAAGCC | 57.055 | 32.000 | 0.00 | 0.00 | 46.85 | 4.35 |
28 | 29 | 6.165700 | ACAATTTTTGAAGATGTCAAGCCT | 57.834 | 33.333 | 0.00 | 0.00 | 46.85 | 4.58 |
29 | 30 | 6.585416 | ACAATTTTTGAAGATGTCAAGCCTT | 58.415 | 32.000 | 0.00 | 0.00 | 46.85 | 4.35 |
30 | 31 | 6.480981 | ACAATTTTTGAAGATGTCAAGCCTTG | 59.519 | 34.615 | 0.00 | 0.00 | 46.85 | 3.61 |
31 | 32 | 5.850557 | TTTTTGAAGATGTCAAGCCTTGA | 57.149 | 34.783 | 2.24 | 2.24 | 46.85 | 3.02 |
32 | 33 | 5.443185 | TTTTGAAGATGTCAAGCCTTGAG | 57.557 | 39.130 | 7.55 | 0.00 | 46.85 | 3.02 |
33 | 34 | 3.063510 | TGAAGATGTCAAGCCTTGAGG | 57.936 | 47.619 | 7.55 | 0.00 | 41.01 | 3.86 |
46 | 47 | 3.911661 | CCTTGAGGCTCTTTTGTTCAG | 57.088 | 47.619 | 16.72 | 0.00 | 0.00 | 3.02 |
47 | 48 | 3.217626 | CCTTGAGGCTCTTTTGTTCAGT | 58.782 | 45.455 | 16.72 | 0.00 | 0.00 | 3.41 |
48 | 49 | 3.004106 | CCTTGAGGCTCTTTTGTTCAGTG | 59.996 | 47.826 | 16.72 | 0.00 | 0.00 | 3.66 |
49 | 50 | 3.281727 | TGAGGCTCTTTTGTTCAGTGT | 57.718 | 42.857 | 16.72 | 0.00 | 0.00 | 3.55 |
50 | 51 | 3.620488 | TGAGGCTCTTTTGTTCAGTGTT | 58.380 | 40.909 | 16.72 | 0.00 | 0.00 | 3.32 |
51 | 52 | 3.378112 | TGAGGCTCTTTTGTTCAGTGTTG | 59.622 | 43.478 | 16.72 | 0.00 | 0.00 | 3.33 |
52 | 53 | 2.099756 | AGGCTCTTTTGTTCAGTGTTGC | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
53 | 54 | 2.159254 | GGCTCTTTTGTTCAGTGTTGCA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
54 | 55 | 2.854185 | GCTCTTTTGTTCAGTGTTGCAC | 59.146 | 45.455 | 0.00 | 0.00 | 34.10 | 4.57 |
55 | 56 | 3.673052 | GCTCTTTTGTTCAGTGTTGCACA | 60.673 | 43.478 | 2.01 | 0.00 | 36.74 | 4.57 |
56 | 57 | 4.675510 | CTCTTTTGTTCAGTGTTGCACAT | 58.324 | 39.130 | 2.01 | 0.00 | 36.74 | 3.21 |
57 | 58 | 4.422840 | TCTTTTGTTCAGTGTTGCACATG | 58.577 | 39.130 | 2.01 | 0.00 | 36.74 | 3.21 |
58 | 59 | 3.865011 | TTTGTTCAGTGTTGCACATGT | 57.135 | 38.095 | 0.00 | 0.00 | 36.74 | 3.21 |
59 | 60 | 3.419264 | TTGTTCAGTGTTGCACATGTC | 57.581 | 42.857 | 0.00 | 0.00 | 36.74 | 3.06 |
60 | 61 | 2.363683 | TGTTCAGTGTTGCACATGTCA | 58.636 | 42.857 | 0.00 | 0.00 | 36.74 | 3.58 |
61 | 62 | 2.751806 | TGTTCAGTGTTGCACATGTCAA | 59.248 | 40.909 | 0.00 | 0.73 | 36.74 | 3.18 |
62 | 63 | 3.181498 | TGTTCAGTGTTGCACATGTCAAG | 60.181 | 43.478 | 0.00 | 0.00 | 36.74 | 3.02 |
63 | 64 | 1.334556 | TCAGTGTTGCACATGTCAAGC | 59.665 | 47.619 | 0.00 | 0.00 | 36.74 | 4.01 |
64 | 65 | 0.308684 | AGTGTTGCACATGTCAAGCG | 59.691 | 50.000 | 0.00 | 0.00 | 36.74 | 4.68 |
65 | 66 | 0.029300 | GTGTTGCACATGTCAAGCGT | 59.971 | 50.000 | 0.00 | 0.00 | 34.08 | 5.07 |
66 | 67 | 0.307453 | TGTTGCACATGTCAAGCGTC | 59.693 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
67 | 68 | 0.722469 | GTTGCACATGTCAAGCGTCG | 60.722 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
68 | 69 | 1.840630 | TTGCACATGTCAAGCGTCGG | 61.841 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
69 | 70 | 2.317609 | GCACATGTCAAGCGTCGGT | 61.318 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
70 | 71 | 1.781555 | CACATGTCAAGCGTCGGTC | 59.218 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
71 | 72 | 1.374252 | ACATGTCAAGCGTCGGTCC | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 4.46 |
72 | 73 | 1.079819 | CATGTCAAGCGTCGGTCCT | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
73 | 74 | 0.172578 | CATGTCAAGCGTCGGTCCTA | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
74 | 75 | 0.892755 | ATGTCAAGCGTCGGTCCTAA | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
75 | 76 | 0.675083 | TGTCAAGCGTCGGTCCTAAA | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
76 | 77 | 1.068895 | TGTCAAGCGTCGGTCCTAAAA | 59.931 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
77 | 78 | 1.725164 | GTCAAGCGTCGGTCCTAAAAG | 59.275 | 52.381 | 0.00 | 0.00 | 0.00 | 2.27 |
78 | 79 | 1.614903 | TCAAGCGTCGGTCCTAAAAGA | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
79 | 80 | 2.036217 | TCAAGCGTCGGTCCTAAAAGAA | 59.964 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
80 | 81 | 2.803956 | CAAGCGTCGGTCCTAAAAGAAA | 59.196 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
81 | 82 | 2.685100 | AGCGTCGGTCCTAAAAGAAAG | 58.315 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
82 | 83 | 2.298163 | AGCGTCGGTCCTAAAAGAAAGA | 59.702 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
83 | 84 | 3.062042 | GCGTCGGTCCTAAAAGAAAGAA | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
84 | 85 | 3.495753 | GCGTCGGTCCTAAAAGAAAGAAA | 59.504 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
85 | 86 | 4.610007 | GCGTCGGTCCTAAAAGAAAGAAAC | 60.610 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
86 | 87 | 4.508861 | CGTCGGTCCTAAAAGAAAGAAACA | 59.491 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
87 | 88 | 5.006941 | CGTCGGTCCTAAAAGAAAGAAACAA | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
88 | 89 | 6.197276 | GTCGGTCCTAAAAGAAAGAAACAAC | 58.803 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
89 | 90 | 6.037940 | GTCGGTCCTAAAAGAAAGAAACAACT | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
90 | 91 | 7.225341 | GTCGGTCCTAAAAGAAAGAAACAACTA | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
91 | 92 | 7.769970 | TCGGTCCTAAAAGAAAGAAACAACTAA | 59.230 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
92 | 93 | 8.400186 | CGGTCCTAAAAGAAAGAAACAACTAAA | 58.600 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
122 | 123 | 9.875691 | TCTGGAAGATAATATGTACATATGCAC | 57.124 | 33.333 | 25.42 | 18.60 | 38.67 | 4.57 |
123 | 124 | 9.657419 | CTGGAAGATAATATGTACATATGCACA | 57.343 | 33.333 | 25.42 | 11.15 | 32.66 | 4.57 |
134 | 135 | 7.446001 | TGTACATATGCACATTCTTGAAACA | 57.554 | 32.000 | 4.57 | 0.00 | 0.00 | 2.83 |
135 | 136 | 7.880105 | TGTACATATGCACATTCTTGAAACAA | 58.120 | 30.769 | 4.57 | 0.00 | 0.00 | 2.83 |
136 | 137 | 7.807433 | TGTACATATGCACATTCTTGAAACAAC | 59.193 | 33.333 | 4.57 | 0.00 | 0.00 | 3.32 |
137 | 138 | 6.985117 | ACATATGCACATTCTTGAAACAACT | 58.015 | 32.000 | 1.58 | 0.00 | 0.00 | 3.16 |
138 | 139 | 7.436118 | ACATATGCACATTCTTGAAACAACTT | 58.564 | 30.769 | 1.58 | 0.00 | 0.00 | 2.66 |
139 | 140 | 7.927629 | ACATATGCACATTCTTGAAACAACTTT | 59.072 | 29.630 | 1.58 | 0.00 | 0.00 | 2.66 |
140 | 141 | 9.409312 | CATATGCACATTCTTGAAACAACTTTA | 57.591 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
141 | 142 | 7.935338 | ATGCACATTCTTGAAACAACTTTAG | 57.065 | 32.000 | 0.00 | 0.00 | 0.00 | 1.85 |
142 | 143 | 6.862209 | TGCACATTCTTGAAACAACTTTAGT | 58.138 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
143 | 144 | 7.990917 | TGCACATTCTTGAAACAACTTTAGTA | 58.009 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
144 | 145 | 8.629158 | TGCACATTCTTGAAACAACTTTAGTAT | 58.371 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
145 | 146 | 9.118236 | GCACATTCTTGAAACAACTTTAGTATC | 57.882 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
199 | 200 | 9.665719 | ATTTTGGCAAGTAAAGGTTATTTATGG | 57.334 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
200 | 201 | 7.784470 | TTGGCAAGTAAAGGTTATTTATGGT | 57.216 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
201 | 202 | 7.399245 | TGGCAAGTAAAGGTTATTTATGGTC | 57.601 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
202 | 203 | 6.378848 | TGGCAAGTAAAGGTTATTTATGGTCC | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 4.46 |
203 | 204 | 6.378848 | GGCAAGTAAAGGTTATTTATGGTCCA | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
204 | 205 | 7.255569 | GCAAGTAAAGGTTATTTATGGTCCAC | 58.744 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
205 | 206 | 7.094118 | GCAAGTAAAGGTTATTTATGGTCCACA | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
206 | 207 | 8.966868 | CAAGTAAAGGTTATTTATGGTCCACAT | 58.033 | 33.333 | 0.00 | 0.00 | 43.68 | 3.21 |
207 | 208 | 9.541884 | AAGTAAAGGTTATTTATGGTCCACATT | 57.458 | 29.630 | 0.00 | 0.00 | 41.03 | 2.71 |
208 | 209 | 9.541884 | AGTAAAGGTTATTTATGGTCCACATTT | 57.458 | 29.630 | 0.00 | 0.00 | 41.03 | 2.32 |
211 | 212 | 9.541884 | AAAGGTTATTTATGGTCCACATTTACT | 57.458 | 29.630 | 0.00 | 0.00 | 41.03 | 2.24 |
212 | 213 | 9.541884 | AAGGTTATTTATGGTCCACATTTACTT | 57.458 | 29.630 | 0.00 | 0.00 | 41.03 | 2.24 |
213 | 214 | 9.541884 | AGGTTATTTATGGTCCACATTTACTTT | 57.458 | 29.630 | 0.00 | 0.00 | 41.03 | 2.66 |
221 | 222 | 7.648039 | TGGTCCACATTTACTTTTTGTAAGT | 57.352 | 32.000 | 0.00 | 0.00 | 41.55 | 2.24 |
222 | 223 | 8.068892 | TGGTCCACATTTACTTTTTGTAAGTT | 57.931 | 30.769 | 0.00 | 0.00 | 41.55 | 2.66 |
223 | 224 | 7.976734 | TGGTCCACATTTACTTTTTGTAAGTTG | 59.023 | 33.333 | 0.00 | 0.00 | 41.55 | 3.16 |
224 | 225 | 8.192110 | GGTCCACATTTACTTTTTGTAAGTTGA | 58.808 | 33.333 | 0.00 | 0.00 | 41.55 | 3.18 |
225 | 226 | 9.233232 | GTCCACATTTACTTTTTGTAAGTTGAG | 57.767 | 33.333 | 0.00 | 0.00 | 41.55 | 3.02 |
226 | 227 | 9.179909 | TCCACATTTACTTTTTGTAAGTTGAGA | 57.820 | 29.630 | 0.00 | 0.00 | 41.55 | 3.27 |
227 | 228 | 9.965824 | CCACATTTACTTTTTGTAAGTTGAGAT | 57.034 | 29.630 | 0.00 | 0.00 | 41.55 | 2.75 |
259 | 260 | 6.773976 | TTGGATGAAGTTGTGATTATTCCC | 57.226 | 37.500 | 0.00 | 0.00 | 0.00 | 3.97 |
260 | 261 | 5.825532 | TGGATGAAGTTGTGATTATTCCCA | 58.174 | 37.500 | 0.00 | 0.00 | 0.00 | 4.37 |
261 | 262 | 5.652014 | TGGATGAAGTTGTGATTATTCCCAC | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
262 | 263 | 5.652014 | GGATGAAGTTGTGATTATTCCCACA | 59.348 | 40.000 | 0.00 | 0.00 | 41.04 | 4.17 |
334 | 335 | 7.850935 | TGATATATTTTCTTCCTAGGACGGT | 57.149 | 36.000 | 12.22 | 0.18 | 0.00 | 4.83 |
335 | 336 | 8.258850 | TGATATATTTTCTTCCTAGGACGGTT | 57.741 | 34.615 | 12.22 | 0.00 | 0.00 | 4.44 |
336 | 337 | 8.148351 | TGATATATTTTCTTCCTAGGACGGTTG | 58.852 | 37.037 | 12.22 | 0.00 | 0.00 | 3.77 |
337 | 338 | 4.903045 | ATTTTCTTCCTAGGACGGTTGA | 57.097 | 40.909 | 12.22 | 2.35 | 0.00 | 3.18 |
338 | 339 | 4.903045 | TTTTCTTCCTAGGACGGTTGAT | 57.097 | 40.909 | 12.22 | 0.00 | 0.00 | 2.57 |
339 | 340 | 6.555463 | ATTTTCTTCCTAGGACGGTTGATA | 57.445 | 37.500 | 12.22 | 0.00 | 0.00 | 2.15 |
340 | 341 | 6.363167 | TTTTCTTCCTAGGACGGTTGATAA | 57.637 | 37.500 | 12.22 | 4.25 | 0.00 | 1.75 |
341 | 342 | 6.363167 | TTTCTTCCTAGGACGGTTGATAAA | 57.637 | 37.500 | 12.22 | 2.28 | 0.00 | 1.40 |
342 | 343 | 6.363167 | TTCTTCCTAGGACGGTTGATAAAA | 57.637 | 37.500 | 12.22 | 0.00 | 0.00 | 1.52 |
343 | 344 | 6.363167 | TCTTCCTAGGACGGTTGATAAAAA | 57.637 | 37.500 | 12.22 | 0.00 | 0.00 | 1.94 |
344 | 345 | 6.168389 | TCTTCCTAGGACGGTTGATAAAAAC | 58.832 | 40.000 | 12.22 | 0.00 | 0.00 | 2.43 |
345 | 346 | 5.486735 | TCCTAGGACGGTTGATAAAAACA | 57.513 | 39.130 | 7.62 | 0.00 | 0.00 | 2.83 |
346 | 347 | 6.057321 | TCCTAGGACGGTTGATAAAAACAT | 57.943 | 37.500 | 7.62 | 0.00 | 0.00 | 2.71 |
347 | 348 | 7.185318 | TCCTAGGACGGTTGATAAAAACATA | 57.815 | 36.000 | 7.62 | 0.00 | 0.00 | 2.29 |
348 | 349 | 7.622713 | TCCTAGGACGGTTGATAAAAACATAA | 58.377 | 34.615 | 7.62 | 0.00 | 0.00 | 1.90 |
349 | 350 | 7.550196 | TCCTAGGACGGTTGATAAAAACATAAC | 59.450 | 37.037 | 7.62 | 0.00 | 0.00 | 1.89 |
350 | 351 | 6.505044 | AGGACGGTTGATAAAAACATAACC | 57.495 | 37.500 | 0.00 | 0.00 | 37.90 | 2.85 |
351 | 352 | 6.005198 | AGGACGGTTGATAAAAACATAACCA | 58.995 | 36.000 | 0.00 | 0.00 | 40.54 | 3.67 |
352 | 353 | 6.661805 | AGGACGGTTGATAAAAACATAACCAT | 59.338 | 34.615 | 0.00 | 0.00 | 40.54 | 3.55 |
353 | 354 | 6.750039 | GGACGGTTGATAAAAACATAACCATG | 59.250 | 38.462 | 0.00 | 0.00 | 40.54 | 3.66 |
354 | 355 | 7.362229 | GGACGGTTGATAAAAACATAACCATGA | 60.362 | 37.037 | 0.00 | 0.00 | 40.54 | 3.07 |
355 | 356 | 8.062065 | ACGGTTGATAAAAACATAACCATGAT | 57.938 | 30.769 | 0.00 | 0.00 | 40.54 | 2.45 |
356 | 357 | 9.179909 | ACGGTTGATAAAAACATAACCATGATA | 57.820 | 29.630 | 0.00 | 0.00 | 40.54 | 2.15 |
364 | 365 | 8.850454 | AAAAACATAACCATGATAATACGTGC | 57.150 | 30.769 | 0.00 | 0.00 | 35.96 | 5.34 |
365 | 366 | 5.839262 | ACATAACCATGATAATACGTGCG | 57.161 | 39.130 | 0.00 | 0.00 | 35.96 | 5.34 |
366 | 367 | 5.294356 | ACATAACCATGATAATACGTGCGT | 58.706 | 37.500 | 0.00 | 2.05 | 35.96 | 5.24 |
367 | 368 | 5.756347 | ACATAACCATGATAATACGTGCGTT | 59.244 | 36.000 | 1.66 | 0.00 | 35.96 | 4.84 |
368 | 369 | 4.530094 | AACCATGATAATACGTGCGTTG | 57.470 | 40.909 | 1.66 | 0.00 | 0.00 | 4.10 |
369 | 370 | 2.286833 | ACCATGATAATACGTGCGTTGC | 59.713 | 45.455 | 1.66 | 0.00 | 0.00 | 4.17 |
370 | 371 | 2.286563 | CCATGATAATACGTGCGTTGCA | 59.713 | 45.455 | 1.66 | 0.00 | 35.60 | 4.08 |
389 | 390 | 4.240883 | GCACGTGCATGTTTACTAGTAC | 57.759 | 45.455 | 34.52 | 0.00 | 41.59 | 2.73 |
390 | 391 | 3.924686 | GCACGTGCATGTTTACTAGTACT | 59.075 | 43.478 | 34.52 | 0.00 | 41.59 | 2.73 |
391 | 392 | 5.097529 | GCACGTGCATGTTTACTAGTACTA | 58.902 | 41.667 | 34.52 | 1.89 | 41.59 | 1.82 |
392 | 393 | 5.229469 | GCACGTGCATGTTTACTAGTACTAG | 59.771 | 44.000 | 34.52 | 25.30 | 41.59 | 2.57 |
393 | 394 | 7.113694 | GCACGTGCATGTTTACTAGTACTAGT | 61.114 | 42.308 | 34.52 | 32.39 | 43.67 | 2.57 |
394 | 395 | 7.466805 | CACGTGCATGTTTACTAGTACTAGTA | 58.533 | 38.462 | 30.50 | 30.50 | 43.98 | 1.82 |
422 | 423 | 8.446599 | AACTAAAATGTGCACTTGTAGTTACT | 57.553 | 30.769 | 26.37 | 14.13 | 30.60 | 2.24 |
423 | 424 | 9.550406 | AACTAAAATGTGCACTTGTAGTTACTA | 57.450 | 29.630 | 26.37 | 5.52 | 30.60 | 1.82 |
424 | 425 | 9.204570 | ACTAAAATGTGCACTTGTAGTTACTAG | 57.795 | 33.333 | 19.41 | 6.91 | 35.61 | 2.57 |
425 | 426 | 9.419297 | CTAAAATGTGCACTTGTAGTTACTAGA | 57.581 | 33.333 | 19.41 | 0.00 | 34.05 | 2.43 |
426 | 427 | 8.671384 | AAAATGTGCACTTGTAGTTACTAGAA | 57.329 | 30.769 | 19.41 | 2.07 | 34.05 | 2.10 |
427 | 428 | 7.891183 | AATGTGCACTTGTAGTTACTAGAAG | 57.109 | 36.000 | 22.43 | 22.43 | 41.28 | 2.85 |
428 | 429 | 6.644248 | TGTGCACTTGTAGTTACTAGAAGA | 57.356 | 37.500 | 28.29 | 9.82 | 38.93 | 2.87 |
429 | 430 | 6.678878 | TGTGCACTTGTAGTTACTAGAAGAG | 58.321 | 40.000 | 28.29 | 22.82 | 38.93 | 2.85 |
430 | 431 | 6.264744 | TGTGCACTTGTAGTTACTAGAAGAGT | 59.735 | 38.462 | 28.29 | 11.11 | 38.93 | 3.24 |
431 | 432 | 7.146648 | GTGCACTTGTAGTTACTAGAAGAGTT | 58.853 | 38.462 | 28.29 | 9.82 | 38.93 | 3.01 |
432 | 433 | 8.295288 | GTGCACTTGTAGTTACTAGAAGAGTTA | 58.705 | 37.037 | 28.29 | 15.00 | 38.93 | 2.24 |
433 | 434 | 8.512956 | TGCACTTGTAGTTACTAGAAGAGTTAG | 58.487 | 37.037 | 28.29 | 15.96 | 38.93 | 2.34 |
434 | 435 | 7.485595 | GCACTTGTAGTTACTAGAAGAGTTAGC | 59.514 | 40.741 | 28.29 | 19.92 | 38.93 | 3.09 |
435 | 436 | 8.732531 | CACTTGTAGTTACTAGAAGAGTTAGCT | 58.267 | 37.037 | 28.29 | 8.01 | 38.93 | 3.32 |
436 | 437 | 9.956640 | ACTTGTAGTTACTAGAAGAGTTAGCTA | 57.043 | 33.333 | 28.29 | 0.00 | 38.93 | 3.32 |
439 | 440 | 9.956640 | TGTAGTTACTAGAAGAGTTAGCTAAGT | 57.043 | 33.333 | 13.75 | 13.75 | 39.81 | 2.24 |
443 | 444 | 9.720667 | GTTACTAGAAGAGTTAGCTAAGTTAGC | 57.279 | 37.037 | 24.60 | 24.60 | 44.80 | 3.09 |
444 | 445 | 7.337480 | ACTAGAAGAGTTAGCTAAGTTAGCC | 57.663 | 40.000 | 27.44 | 14.78 | 44.18 | 3.93 |
445 | 446 | 7.120716 | ACTAGAAGAGTTAGCTAAGTTAGCCT | 58.879 | 38.462 | 27.44 | 18.82 | 44.18 | 4.58 |
446 | 447 | 8.273605 | ACTAGAAGAGTTAGCTAAGTTAGCCTA | 58.726 | 37.037 | 27.44 | 17.91 | 44.18 | 3.93 |
459 | 460 | 9.356433 | GCTAAGTTAGCCTAGCATACTTATTAC | 57.644 | 37.037 | 22.09 | 0.00 | 45.95 | 1.89 |
467 | 468 | 8.881262 | AGCCTAGCATACTTATTACATAAACCT | 58.119 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
468 | 469 | 8.936864 | GCCTAGCATACTTATTACATAAACCTG | 58.063 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
472 | 473 | 7.661847 | AGCATACTTATTACATAAACCTGAGGC | 59.338 | 37.037 | 0.00 | 0.00 | 0.00 | 4.70 |
473 | 474 | 7.661847 | GCATACTTATTACATAAACCTGAGGCT | 59.338 | 37.037 | 0.00 | 0.00 | 0.00 | 4.58 |
476 | 477 | 7.506971 | ACTTATTACATAAACCTGAGGCTACC | 58.493 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
477 | 478 | 2.981859 | ACATAAACCTGAGGCTACCG | 57.018 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
478 | 479 | 2.185387 | ACATAAACCTGAGGCTACCGT | 58.815 | 47.619 | 0.00 | 0.00 | 0.00 | 4.83 |
479 | 480 | 3.368248 | ACATAAACCTGAGGCTACCGTA | 58.632 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
480 | 481 | 3.131755 | ACATAAACCTGAGGCTACCGTAC | 59.868 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
489 | 490 | 2.039509 | GCTACCGTACCTAGCCCTG | 58.960 | 63.158 | 6.09 | 0.00 | 31.94 | 4.45 |
520 | 523 | 7.650890 | TCTATATGCAGTAACAATGCCATTTG | 58.349 | 34.615 | 0.00 | 0.00 | 43.18 | 2.32 |
540 | 543 | 4.853924 | TGGTCCTTGAAAATCTTTCTGC | 57.146 | 40.909 | 1.22 | 0.00 | 0.00 | 4.26 |
559 | 562 | 2.107953 | CCTGAAGAGGCTAGGCGC | 59.892 | 66.667 | 12.28 | 12.28 | 38.13 | 6.53 |
560 | 563 | 2.430610 | CCTGAAGAGGCTAGGCGCT | 61.431 | 63.158 | 16.95 | 16.95 | 39.13 | 5.92 |
561 | 564 | 1.109920 | CCTGAAGAGGCTAGGCGCTA | 61.110 | 60.000 | 22.47 | 7.62 | 39.13 | 4.26 |
562 | 565 | 0.313672 | CTGAAGAGGCTAGGCGCTAG | 59.686 | 60.000 | 22.47 | 13.45 | 39.13 | 3.42 |
563 | 566 | 1.109920 | TGAAGAGGCTAGGCGCTAGG | 61.110 | 60.000 | 22.47 | 0.00 | 39.13 | 3.02 |
564 | 567 | 1.811645 | GAAGAGGCTAGGCGCTAGGG | 61.812 | 65.000 | 22.47 | 1.65 | 39.13 | 3.53 |
565 | 568 | 3.307108 | GAGGCTAGGCGCTAGGGG | 61.307 | 72.222 | 12.91 | 0.00 | 39.13 | 4.79 |
583 | 586 | 5.913946 | AGGGGGTTCTATCCTTAAAGATG | 57.086 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
620 | 623 | 0.620556 | TCCAAATGCTCCAGGAGACC | 59.379 | 55.000 | 21.89 | 3.73 | 0.00 | 3.85 |
625 | 634 | 0.987081 | ATGCTCCAGGAGACCAGCAT | 60.987 | 55.000 | 21.89 | 13.72 | 45.38 | 3.79 |
656 | 665 | 1.080298 | GGTCAACCCTCGTACACGG | 60.080 | 63.158 | 1.39 | 0.00 | 40.29 | 4.94 |
672 | 681 | 2.946329 | ACACGGTACATGCAAGTCAAAA | 59.054 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
722 | 731 | 5.046159 | ACCACATCGAGGTCCAAATTAACTA | 60.046 | 40.000 | 0.00 | 0.00 | 32.90 | 2.24 |
723 | 732 | 5.523916 | CCACATCGAGGTCCAAATTAACTAG | 59.476 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
847 | 856 | 1.103398 | ACAGCACTTCACCACTTGCC | 61.103 | 55.000 | 0.00 | 0.00 | 35.47 | 4.52 |
871 | 880 | 7.046033 | CCTACACGACCAGGTAAAAATAATCT | 58.954 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
934 | 950 | 1.625818 | CCCAGACTGCAAGAGTAAGGT | 59.374 | 52.381 | 0.00 | 0.00 | 37.43 | 3.50 |
960 | 1014 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1030 | 1097 | 0.863538 | CTTCATCACGACGGAGCTCG | 60.864 | 60.000 | 7.83 | 5.83 | 45.88 | 5.03 |
1077 | 1144 | 2.716017 | CCTGCTCGTCCAGGGTCTC | 61.716 | 68.421 | 13.89 | 0.00 | 46.93 | 3.36 |
1082 | 1149 | 1.524863 | CTCGTCCAGGGTCTCGTGTT | 61.525 | 60.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1137 | 1235 | 3.868077 | CCAAAGATAAGAAGCTCAGGTCG | 59.132 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
1294 | 1393 | 4.268359 | GAGGATTGAATTGCTTGGAGAGT | 58.732 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
1331 | 1430 | 2.232941 | TCTGAACGTATGGACAGTTCCC | 59.767 | 50.000 | 0.00 | 0.00 | 42.01 | 3.97 |
1358 | 1457 | 5.060662 | TCTGAGTTGTCGTGGATTCTTAG | 57.939 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
1359 | 1458 | 4.082190 | TCTGAGTTGTCGTGGATTCTTAGG | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
1360 | 1459 | 2.930682 | GAGTTGTCGTGGATTCTTAGGC | 59.069 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
1361 | 1460 | 2.567615 | AGTTGTCGTGGATTCTTAGGCT | 59.432 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
1362 | 1461 | 2.930682 | GTTGTCGTGGATTCTTAGGCTC | 59.069 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1363 | 1462 | 2.457598 | TGTCGTGGATTCTTAGGCTCT | 58.542 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
1364 | 1463 | 2.166459 | TGTCGTGGATTCTTAGGCTCTG | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1365 | 1464 | 2.166664 | GTCGTGGATTCTTAGGCTCTGT | 59.833 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1366 | 1465 | 2.832129 | TCGTGGATTCTTAGGCTCTGTT | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1367 | 1466 | 3.119101 | TCGTGGATTCTTAGGCTCTGTTC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1368 | 1467 | 3.190874 | GTGGATTCTTAGGCTCTGTTCG | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1369 | 1468 | 2.168521 | TGGATTCTTAGGCTCTGTTCGG | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1370 | 1469 | 2.431057 | GGATTCTTAGGCTCTGTTCGGA | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1371 | 1470 | 3.491792 | GGATTCTTAGGCTCTGTTCGGAG | 60.492 | 52.174 | 0.00 | 4.45 | 36.50 | 4.63 |
1372 | 1471 | 2.217510 | TCTTAGGCTCTGTTCGGAGT | 57.782 | 50.000 | 9.89 | 0.00 | 35.89 | 3.85 |
1373 | 1472 | 2.093106 | TCTTAGGCTCTGTTCGGAGTC | 58.907 | 52.381 | 5.23 | 5.23 | 38.14 | 3.36 |
1374 | 1473 | 1.819288 | CTTAGGCTCTGTTCGGAGTCA | 59.181 | 52.381 | 14.42 | 0.08 | 40.09 | 3.41 |
1375 | 1474 | 1.174783 | TAGGCTCTGTTCGGAGTCAC | 58.825 | 55.000 | 14.42 | 4.62 | 40.09 | 3.67 |
1376 | 1475 | 0.540830 | AGGCTCTGTTCGGAGTCACT | 60.541 | 55.000 | 14.42 | 6.47 | 40.09 | 3.41 |
1377 | 1476 | 1.174783 | GGCTCTGTTCGGAGTCACTA | 58.825 | 55.000 | 8.19 | 0.00 | 37.82 | 2.74 |
1378 | 1477 | 1.135344 | GGCTCTGTTCGGAGTCACTAC | 60.135 | 57.143 | 8.19 | 0.00 | 37.82 | 2.73 |
1379 | 1478 | 1.540267 | GCTCTGTTCGGAGTCACTACA | 59.460 | 52.381 | 9.89 | 0.00 | 35.89 | 2.74 |
1380 | 1479 | 2.030185 | GCTCTGTTCGGAGTCACTACAA | 60.030 | 50.000 | 9.89 | 0.00 | 35.89 | 2.41 |
1381 | 1480 | 3.566523 | CTCTGTTCGGAGTCACTACAAC | 58.433 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1382 | 1481 | 3.220110 | TCTGTTCGGAGTCACTACAACT | 58.780 | 45.455 | 4.58 | 0.00 | 0.00 | 3.16 |
1383 | 1482 | 3.252701 | TCTGTTCGGAGTCACTACAACTC | 59.747 | 47.826 | 4.58 | 0.00 | 41.98 | 3.01 |
1394 | 1493 | 8.170999 | GAGTCACTACAACTCCTAAAAATACG | 57.829 | 38.462 | 0.00 | 0.00 | 37.72 | 3.06 |
1395 | 1494 | 7.889469 | AGTCACTACAACTCCTAAAAATACGA | 58.111 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
1396 | 1495 | 8.529476 | AGTCACTACAACTCCTAAAAATACGAT | 58.471 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
1397 | 1496 | 8.592998 | GTCACTACAACTCCTAAAAATACGATG | 58.407 | 37.037 | 0.00 | 0.00 | 0.00 | 3.84 |
1398 | 1497 | 8.525316 | TCACTACAACTCCTAAAAATACGATGA | 58.475 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
1399 | 1498 | 8.808529 | CACTACAACTCCTAAAAATACGATGAG | 58.191 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1400 | 1499 | 6.663944 | ACAACTCCTAAAAATACGATGAGC | 57.336 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
1401 | 1500 | 6.407202 | ACAACTCCTAAAAATACGATGAGCT | 58.593 | 36.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1402 | 1501 | 6.313905 | ACAACTCCTAAAAATACGATGAGCTG | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
1403 | 1502 | 4.811557 | ACTCCTAAAAATACGATGAGCTGC | 59.188 | 41.667 | 0.00 | 0.00 | 0.00 | 5.25 |
1404 | 1503 | 3.802139 | TCCTAAAAATACGATGAGCTGCG | 59.198 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
1405 | 1504 | 3.059597 | CCTAAAAATACGATGAGCTGCGG | 60.060 | 47.826 | 0.00 | 0.00 | 0.00 | 5.69 |
1406 | 1505 | 2.309528 | AAAATACGATGAGCTGCGGA | 57.690 | 45.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1407 | 1506 | 1.858091 | AAATACGATGAGCTGCGGAG | 58.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1420 | 1519 | 3.077907 | CGGAGCTTCCCTTTCCCA | 58.922 | 61.111 | 0.00 | 0.00 | 31.13 | 4.37 |
1421 | 1520 | 1.378762 | CGGAGCTTCCCTTTCCCAA | 59.621 | 57.895 | 0.00 | 0.00 | 31.13 | 4.12 |
1422 | 1521 | 0.960861 | CGGAGCTTCCCTTTCCCAAC | 60.961 | 60.000 | 0.00 | 0.00 | 31.13 | 3.77 |
1423 | 1522 | 0.405973 | GGAGCTTCCCTTTCCCAACT | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1424 | 1523 | 1.614583 | GGAGCTTCCCTTTCCCAACTC | 60.615 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
1425 | 1524 | 0.405973 | AGCTTCCCTTTCCCAACTCC | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1426 | 1525 | 0.112412 | GCTTCCCTTTCCCAACTCCA | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1427 | 1526 | 1.272704 | GCTTCCCTTTCCCAACTCCAT | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1428 | 1527 | 2.450476 | CTTCCCTTTCCCAACTCCATG | 58.550 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
1429 | 1528 | 0.039618 | TCCCTTTCCCAACTCCATGC | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
1430 | 1529 | 0.040204 | CCCTTTCCCAACTCCATGCT | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1431 | 1530 | 1.550869 | CCCTTTCCCAACTCCATGCTT | 60.551 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1432 | 1531 | 2.250924 | CCTTTCCCAACTCCATGCTTT | 58.749 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1433 | 1532 | 2.634453 | CCTTTCCCAACTCCATGCTTTT | 59.366 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
1434 | 1533 | 3.071457 | CCTTTCCCAACTCCATGCTTTTT | 59.929 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
1457 | 1556 | 3.307445 | CCAGCTCTGGGAGTGGAG | 58.693 | 66.667 | 8.03 | 0.00 | 46.81 | 3.86 |
1458 | 1557 | 1.611851 | CCAGCTCTGGGAGTGGAGT | 60.612 | 63.158 | 8.03 | 0.00 | 46.81 | 3.85 |
1459 | 1558 | 1.595882 | CAGCTCTGGGAGTGGAGTG | 59.404 | 63.158 | 0.00 | 0.00 | 31.39 | 3.51 |
1460 | 1559 | 0.902048 | CAGCTCTGGGAGTGGAGTGA | 60.902 | 60.000 | 0.00 | 0.00 | 31.39 | 3.41 |
1461 | 1560 | 0.042431 | AGCTCTGGGAGTGGAGTGAT | 59.958 | 55.000 | 0.00 | 0.00 | 31.39 | 3.06 |
1462 | 1561 | 0.177604 | GCTCTGGGAGTGGAGTGATG | 59.822 | 60.000 | 0.00 | 0.00 | 31.39 | 3.07 |
1463 | 1562 | 0.829333 | CTCTGGGAGTGGAGTGATGG | 59.171 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1464 | 1563 | 0.413434 | TCTGGGAGTGGAGTGATGGA | 59.587 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1465 | 1564 | 0.829333 | CTGGGAGTGGAGTGATGGAG | 59.171 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1466 | 1565 | 0.117140 | TGGGAGTGGAGTGATGGAGT | 59.883 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1467 | 1566 | 0.539051 | GGGAGTGGAGTGATGGAGTG | 59.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1468 | 1567 | 0.539051 | GGAGTGGAGTGATGGAGTGG | 59.461 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1469 | 1568 | 1.561643 | GAGTGGAGTGATGGAGTGGA | 58.438 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1470 | 1569 | 1.480137 | GAGTGGAGTGATGGAGTGGAG | 59.520 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
1471 | 1570 | 0.539051 | GTGGAGTGATGGAGTGGAGG | 59.461 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1472 | 1571 | 0.618680 | TGGAGTGATGGAGTGGAGGG | 60.619 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1473 | 1572 | 0.618968 | GGAGTGATGGAGTGGAGGGT | 60.619 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1474 | 1573 | 0.827368 | GAGTGATGGAGTGGAGGGTC | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1475 | 1574 | 0.415429 | AGTGATGGAGTGGAGGGTCT | 59.585 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1476 | 1575 | 0.827368 | GTGATGGAGTGGAGGGTCTC | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1484 | 1583 | 3.300013 | GGAGGGTCTCCGAACAGG | 58.700 | 66.667 | 0.00 | 0.00 | 41.08 | 4.00 |
1485 | 1584 | 1.609794 | GGAGGGTCTCCGAACAGGT | 60.610 | 63.158 | 0.00 | 0.00 | 41.08 | 4.00 |
1486 | 1585 | 1.192803 | GGAGGGTCTCCGAACAGGTT | 61.193 | 60.000 | 0.00 | 0.00 | 41.08 | 3.50 |
1487 | 1586 | 0.246910 | GAGGGTCTCCGAACAGGTTC | 59.753 | 60.000 | 2.07 | 2.07 | 41.99 | 3.62 |
1488 | 1587 | 0.178929 | AGGGTCTCCGAACAGGTTCT | 60.179 | 55.000 | 10.17 | 0.00 | 41.99 | 3.01 |
1489 | 1588 | 0.685660 | GGGTCTCCGAACAGGTTCTT | 59.314 | 55.000 | 10.17 | 0.00 | 41.99 | 2.52 |
1490 | 1589 | 1.897802 | GGGTCTCCGAACAGGTTCTTA | 59.102 | 52.381 | 10.17 | 0.00 | 41.99 | 2.10 |
1491 | 1590 | 2.500504 | GGGTCTCCGAACAGGTTCTTAT | 59.499 | 50.000 | 10.17 | 0.00 | 41.99 | 1.73 |
1492 | 1591 | 3.055312 | GGGTCTCCGAACAGGTTCTTATT | 60.055 | 47.826 | 10.17 | 0.00 | 41.99 | 1.40 |
1493 | 1592 | 3.933332 | GGTCTCCGAACAGGTTCTTATTG | 59.067 | 47.826 | 10.17 | 0.00 | 41.99 | 1.90 |
1494 | 1593 | 4.562963 | GGTCTCCGAACAGGTTCTTATTGT | 60.563 | 45.833 | 10.17 | 0.00 | 41.99 | 2.71 |
1495 | 1594 | 4.389077 | GTCTCCGAACAGGTTCTTATTGTG | 59.611 | 45.833 | 10.17 | 0.00 | 41.99 | 3.33 |
1496 | 1595 | 3.670625 | TCCGAACAGGTTCTTATTGTGG | 58.329 | 45.455 | 10.17 | 2.86 | 41.99 | 4.17 |
1497 | 1596 | 3.325425 | TCCGAACAGGTTCTTATTGTGGA | 59.675 | 43.478 | 10.17 | 4.96 | 41.99 | 4.02 |
1498 | 1597 | 4.019681 | TCCGAACAGGTTCTTATTGTGGAT | 60.020 | 41.667 | 10.17 | 0.00 | 41.99 | 3.41 |
1512 | 1611 | 5.649782 | ATTGTGGATTTGTGGTTGAGATC | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 2.75 |
1660 | 1764 | 8.006298 | TGTGATTATGGTTCTTGAGTTTTTGT | 57.994 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
1664 | 1768 | 7.979115 | TTATGGTTCTTGAGTTTTTGTTTCG | 57.021 | 32.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1679 | 1783 | 9.927324 | GTTTTTGTTTCGTTTGTAGTAAACTTC | 57.073 | 29.630 | 0.00 | 0.00 | 33.89 | 3.01 |
1681 | 1785 | 8.883789 | TTTGTTTCGTTTGTAGTAAACTTCAG | 57.116 | 30.769 | 0.00 | 0.00 | 33.89 | 3.02 |
1713 | 1820 | 1.616159 | ACACCAGCCAATACAACACC | 58.384 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1725 | 1832 | 2.038387 | ACAACACCGAGAGCAACTTT | 57.962 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1736 | 1843 | 3.942115 | GAGAGCAACTTTAATGGGAGGAC | 59.058 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
1759 | 1869 | 0.037697 | TGTCCGTTTGAGTCATCCGG | 60.038 | 55.000 | 19.68 | 19.68 | 39.98 | 5.14 |
1792 | 1902 | 3.281332 | CCAACGGGGTGATCCAAAT | 57.719 | 52.632 | 0.00 | 0.00 | 37.22 | 2.32 |
1804 | 1914 | 1.669760 | TCCAAATGGACGTCCGTGC | 60.670 | 57.895 | 29.51 | 6.32 | 39.78 | 5.34 |
1821 | 1931 | 4.379243 | CCCGCCTGCTGTTCGTCT | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1836 | 1946 | 1.812686 | CGTCTCCGACCCAAACCTGA | 61.813 | 60.000 | 0.00 | 0.00 | 35.63 | 3.86 |
1848 | 1958 | 2.490718 | CCAAACCTGACCCAAATCTGGA | 60.491 | 50.000 | 5.78 | 0.00 | 46.92 | 3.86 |
1877 | 1987 | 1.005294 | GTACGAAGCGGACGAAAGCA | 61.005 | 55.000 | 7.16 | 0.00 | 28.66 | 3.91 |
1937 | 2047 | 1.744320 | CGGGTCCCATATGTCAGCGA | 61.744 | 60.000 | 9.12 | 0.00 | 0.00 | 4.93 |
1943 | 2053 | 1.541889 | CCCATATGTCAGCGACTGCAT | 60.542 | 52.381 | 1.24 | 15.13 | 46.23 | 3.96 |
1980 | 2090 | 1.438814 | CATTGCGATTTCTGCCCCC | 59.561 | 57.895 | 0.00 | 0.00 | 0.00 | 5.40 |
2038 | 2148 | 4.813526 | CCGCTCCTCGACGACGTG | 62.814 | 72.222 | 4.58 | 4.71 | 41.67 | 4.49 |
2039 | 2149 | 4.086178 | CGCTCCTCGACGACGTGT | 62.086 | 66.667 | 4.58 | 0.00 | 41.67 | 4.49 |
2198 | 2376 | 4.008933 | GCACGAGCAGAGGGTGGT | 62.009 | 66.667 | 0.00 | 0.00 | 41.58 | 4.16 |
2204 | 2382 | 3.368571 | GCAGAGGGTGGTTGCAGC | 61.369 | 66.667 | 0.00 | 0.00 | 37.75 | 5.25 |
2207 | 2385 | 2.149383 | AGAGGGTGGTTGCAGCAGA | 61.149 | 57.895 | 2.05 | 0.00 | 0.00 | 4.26 |
2286 | 2464 | 0.030908 | GGCGTGAGGGAGATAGAACG | 59.969 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 8.006027 | GCTTGACATCTTCAAAAATTGTAAAGC | 58.994 | 33.333 | 7.48 | 7.48 | 43.90 | 3.51 |
2 | 3 | 8.203485 | AGGCTTGACATCTTCAAAAATTGTAAA | 58.797 | 29.630 | 0.00 | 0.00 | 43.90 | 2.01 |
5 | 6 | 6.165700 | AGGCTTGACATCTTCAAAAATTGT | 57.834 | 33.333 | 0.00 | 0.00 | 43.90 | 2.71 |
6 | 7 | 6.702723 | TCAAGGCTTGACATCTTCAAAAATTG | 59.297 | 34.615 | 25.38 | 0.00 | 43.90 | 2.32 |
11 | 12 | 3.822735 | CCTCAAGGCTTGACATCTTCAAA | 59.177 | 43.478 | 25.38 | 1.88 | 43.90 | 2.69 |
12 | 13 | 3.415212 | CCTCAAGGCTTGACATCTTCAA | 58.585 | 45.455 | 25.38 | 2.62 | 42.26 | 2.69 |
13 | 14 | 3.063510 | CCTCAAGGCTTGACATCTTCA | 57.936 | 47.619 | 25.38 | 3.37 | 35.46 | 3.02 |
26 | 27 | 3.004106 | CACTGAACAAAAGAGCCTCAAGG | 59.996 | 47.826 | 0.00 | 0.00 | 38.53 | 3.61 |
27 | 28 | 3.629398 | ACACTGAACAAAAGAGCCTCAAG | 59.371 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
28 | 29 | 3.620488 | ACACTGAACAAAAGAGCCTCAA | 58.380 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
29 | 30 | 3.281727 | ACACTGAACAAAAGAGCCTCA | 57.718 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
30 | 31 | 3.793465 | GCAACACTGAACAAAAGAGCCTC | 60.793 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
31 | 32 | 2.099756 | GCAACACTGAACAAAAGAGCCT | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
32 | 33 | 2.159254 | TGCAACACTGAACAAAAGAGCC | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
33 | 34 | 2.854185 | GTGCAACACTGAACAAAAGAGC | 59.146 | 45.455 | 0.00 | 0.00 | 36.32 | 4.09 |
34 | 35 | 4.095410 | TGTGCAACACTGAACAAAAGAG | 57.905 | 40.909 | 0.00 | 0.00 | 45.67 | 2.85 |
48 | 49 | 0.722469 | CGACGCTTGACATGTGCAAC | 60.722 | 55.000 | 1.15 | 0.00 | 37.35 | 4.17 |
49 | 50 | 1.569003 | CGACGCTTGACATGTGCAA | 59.431 | 52.632 | 1.15 | 6.81 | 0.00 | 4.08 |
50 | 51 | 2.316867 | CCGACGCTTGACATGTGCA | 61.317 | 57.895 | 1.15 | 0.00 | 0.00 | 4.57 |
51 | 52 | 2.227968 | GACCGACGCTTGACATGTGC | 62.228 | 60.000 | 1.15 | 0.00 | 0.00 | 4.57 |
52 | 53 | 1.626654 | GGACCGACGCTTGACATGTG | 61.627 | 60.000 | 1.15 | 0.62 | 0.00 | 3.21 |
53 | 54 | 1.374252 | GGACCGACGCTTGACATGT | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
54 | 55 | 0.172578 | TAGGACCGACGCTTGACATG | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
55 | 56 | 0.892755 | TTAGGACCGACGCTTGACAT | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
56 | 57 | 0.675083 | TTTAGGACCGACGCTTGACA | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
57 | 58 | 1.725164 | CTTTTAGGACCGACGCTTGAC | 59.275 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
58 | 59 | 1.614903 | TCTTTTAGGACCGACGCTTGA | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
59 | 60 | 2.074547 | TCTTTTAGGACCGACGCTTG | 57.925 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
60 | 61 | 2.825861 | TTCTTTTAGGACCGACGCTT | 57.174 | 45.000 | 0.00 | 0.00 | 0.00 | 4.68 |
61 | 62 | 2.298163 | TCTTTCTTTTAGGACCGACGCT | 59.702 | 45.455 | 0.00 | 0.00 | 0.00 | 5.07 |
62 | 63 | 2.680577 | TCTTTCTTTTAGGACCGACGC | 58.319 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
63 | 64 | 4.508861 | TGTTTCTTTCTTTTAGGACCGACG | 59.491 | 41.667 | 0.00 | 0.00 | 0.00 | 5.12 |
64 | 65 | 5.996669 | TGTTTCTTTCTTTTAGGACCGAC | 57.003 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
65 | 66 | 6.117488 | AGTTGTTTCTTTCTTTTAGGACCGA | 58.883 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
66 | 67 | 6.373186 | AGTTGTTTCTTTCTTTTAGGACCG | 57.627 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
96 | 97 | 9.875691 | GTGCATATGTACATATTATCTTCCAGA | 57.124 | 33.333 | 23.03 | 0.00 | 31.98 | 3.86 |
97 | 98 | 9.657419 | TGTGCATATGTACATATTATCTTCCAG | 57.343 | 33.333 | 23.03 | 11.36 | 35.76 | 3.86 |
110 | 111 | 7.446001 | TGTTTCAAGAATGTGCATATGTACA | 57.554 | 32.000 | 25.82 | 25.82 | 44.32 | 2.90 |
111 | 112 | 8.023128 | AGTTGTTTCAAGAATGTGCATATGTAC | 58.977 | 33.333 | 16.19 | 16.19 | 0.00 | 2.90 |
112 | 113 | 8.109705 | AGTTGTTTCAAGAATGTGCATATGTA | 57.890 | 30.769 | 4.29 | 0.00 | 0.00 | 2.29 |
113 | 114 | 6.985117 | AGTTGTTTCAAGAATGTGCATATGT | 58.015 | 32.000 | 4.29 | 0.00 | 0.00 | 2.29 |
114 | 115 | 7.878477 | AAGTTGTTTCAAGAATGTGCATATG | 57.122 | 32.000 | 0.00 | 0.00 | 0.00 | 1.78 |
115 | 116 | 9.630098 | CTAAAGTTGTTTCAAGAATGTGCATAT | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
116 | 117 | 8.629158 | ACTAAAGTTGTTTCAAGAATGTGCATA | 58.371 | 29.630 | 0.00 | 0.00 | 0.00 | 3.14 |
117 | 118 | 7.491682 | ACTAAAGTTGTTTCAAGAATGTGCAT | 58.508 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
118 | 119 | 6.862209 | ACTAAAGTTGTTTCAAGAATGTGCA | 58.138 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
119 | 120 | 9.118236 | GATACTAAAGTTGTTTCAAGAATGTGC | 57.882 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
173 | 174 | 9.665719 | CCATAAATAACCTTTACTTGCCAAAAT | 57.334 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
174 | 175 | 8.652290 | ACCATAAATAACCTTTACTTGCCAAAA | 58.348 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
175 | 176 | 8.196378 | ACCATAAATAACCTTTACTTGCCAAA | 57.804 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
176 | 177 | 7.093684 | GGACCATAAATAACCTTTACTTGCCAA | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 4.52 |
177 | 178 | 6.378848 | GGACCATAAATAACCTTTACTTGCCA | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
178 | 179 | 6.378848 | TGGACCATAAATAACCTTTACTTGCC | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 4.52 |
179 | 180 | 7.094118 | TGTGGACCATAAATAACCTTTACTTGC | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 4.01 |
180 | 181 | 8.343168 | TGTGGACCATAAATAACCTTTACTTG | 57.657 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
181 | 182 | 9.541884 | AATGTGGACCATAAATAACCTTTACTT | 57.458 | 29.630 | 0.00 | 0.00 | 31.97 | 2.24 |
182 | 183 | 9.541884 | AAATGTGGACCATAAATAACCTTTACT | 57.458 | 29.630 | 0.00 | 0.00 | 31.97 | 2.24 |
185 | 186 | 9.541884 | AGTAAATGTGGACCATAAATAACCTTT | 57.458 | 29.630 | 0.00 | 0.00 | 31.97 | 3.11 |
186 | 187 | 9.541884 | AAGTAAATGTGGACCATAAATAACCTT | 57.458 | 29.630 | 0.00 | 0.00 | 31.97 | 3.50 |
187 | 188 | 9.541884 | AAAGTAAATGTGGACCATAAATAACCT | 57.458 | 29.630 | 0.00 | 0.00 | 31.97 | 3.50 |
195 | 196 | 9.357161 | ACTTACAAAAAGTAAATGTGGACCATA | 57.643 | 29.630 | 0.00 | 0.00 | 41.89 | 2.74 |
196 | 197 | 8.245195 | ACTTACAAAAAGTAAATGTGGACCAT | 57.755 | 30.769 | 0.00 | 0.00 | 41.89 | 3.55 |
197 | 198 | 7.648039 | ACTTACAAAAAGTAAATGTGGACCA | 57.352 | 32.000 | 0.00 | 0.00 | 41.89 | 4.02 |
198 | 199 | 8.192110 | TCAACTTACAAAAAGTAAATGTGGACC | 58.808 | 33.333 | 0.00 | 0.00 | 41.89 | 4.46 |
199 | 200 | 9.233232 | CTCAACTTACAAAAAGTAAATGTGGAC | 57.767 | 33.333 | 0.00 | 0.00 | 41.89 | 4.02 |
200 | 201 | 9.179909 | TCTCAACTTACAAAAAGTAAATGTGGA | 57.820 | 29.630 | 0.00 | 0.00 | 41.89 | 4.02 |
201 | 202 | 9.965824 | ATCTCAACTTACAAAAAGTAAATGTGG | 57.034 | 29.630 | 0.00 | 0.00 | 41.89 | 4.17 |
233 | 234 | 8.093927 | GGGAATAATCACAACTTCATCCAAAAA | 58.906 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
234 | 235 | 7.234371 | TGGGAATAATCACAACTTCATCCAAAA | 59.766 | 33.333 | 0.00 | 0.00 | 35.57 | 2.44 |
235 | 236 | 6.723515 | TGGGAATAATCACAACTTCATCCAAA | 59.276 | 34.615 | 0.00 | 0.00 | 35.57 | 3.28 |
236 | 237 | 6.152661 | GTGGGAATAATCACAACTTCATCCAA | 59.847 | 38.462 | 0.00 | 0.00 | 41.66 | 3.53 |
237 | 238 | 5.652014 | GTGGGAATAATCACAACTTCATCCA | 59.348 | 40.000 | 0.00 | 0.00 | 41.66 | 3.41 |
238 | 239 | 5.652014 | TGTGGGAATAATCACAACTTCATCC | 59.348 | 40.000 | 0.00 | 0.00 | 41.66 | 3.51 |
239 | 240 | 6.757897 | TGTGGGAATAATCACAACTTCATC | 57.242 | 37.500 | 0.00 | 0.00 | 41.66 | 2.92 |
308 | 309 | 8.881262 | ACCGTCCTAGGAAGAAAATATATCAAT | 58.119 | 33.333 | 24.51 | 0.00 | 34.73 | 2.57 |
309 | 310 | 8.258850 | ACCGTCCTAGGAAGAAAATATATCAA | 57.741 | 34.615 | 24.51 | 0.00 | 34.73 | 2.57 |
310 | 311 | 7.850935 | ACCGTCCTAGGAAGAAAATATATCA | 57.149 | 36.000 | 24.51 | 0.00 | 34.73 | 2.15 |
311 | 312 | 8.365647 | TCAACCGTCCTAGGAAGAAAATATATC | 58.634 | 37.037 | 24.51 | 2.11 | 34.73 | 1.63 |
312 | 313 | 8.258850 | TCAACCGTCCTAGGAAGAAAATATAT | 57.741 | 34.615 | 24.51 | 0.60 | 34.73 | 0.86 |
313 | 314 | 7.664552 | TCAACCGTCCTAGGAAGAAAATATA | 57.335 | 36.000 | 24.51 | 2.33 | 34.73 | 0.86 |
314 | 315 | 6.555463 | TCAACCGTCCTAGGAAGAAAATAT | 57.445 | 37.500 | 24.51 | 2.83 | 34.73 | 1.28 |
315 | 316 | 6.555463 | ATCAACCGTCCTAGGAAGAAAATA | 57.445 | 37.500 | 24.51 | 7.56 | 34.73 | 1.40 |
316 | 317 | 4.903045 | TCAACCGTCCTAGGAAGAAAAT | 57.097 | 40.909 | 24.51 | 5.73 | 34.73 | 1.82 |
317 | 318 | 4.903045 | ATCAACCGTCCTAGGAAGAAAA | 57.097 | 40.909 | 24.51 | 8.53 | 34.73 | 2.29 |
318 | 319 | 6.363167 | TTTATCAACCGTCCTAGGAAGAAA | 57.637 | 37.500 | 24.51 | 13.18 | 34.73 | 2.52 |
319 | 320 | 6.363167 | TTTTATCAACCGTCCTAGGAAGAA | 57.637 | 37.500 | 24.51 | 8.06 | 34.73 | 2.52 |
320 | 321 | 6.168389 | GTTTTTATCAACCGTCCTAGGAAGA | 58.832 | 40.000 | 24.51 | 12.70 | 34.73 | 2.87 |
321 | 322 | 5.935789 | TGTTTTTATCAACCGTCCTAGGAAG | 59.064 | 40.000 | 14.65 | 16.02 | 34.73 | 3.46 |
322 | 323 | 5.867330 | TGTTTTTATCAACCGTCCTAGGAA | 58.133 | 37.500 | 14.65 | 0.00 | 34.73 | 3.36 |
323 | 324 | 5.486735 | TGTTTTTATCAACCGTCCTAGGA | 57.513 | 39.130 | 7.62 | 7.62 | 34.73 | 2.94 |
324 | 325 | 7.201670 | GGTTATGTTTTTATCAACCGTCCTAGG | 60.202 | 40.741 | 0.82 | 0.82 | 37.30 | 3.02 |
325 | 326 | 7.334921 | TGGTTATGTTTTTATCAACCGTCCTAG | 59.665 | 37.037 | 0.00 | 0.00 | 41.27 | 3.02 |
326 | 327 | 7.166851 | TGGTTATGTTTTTATCAACCGTCCTA | 58.833 | 34.615 | 0.00 | 0.00 | 41.27 | 2.94 |
327 | 328 | 6.005198 | TGGTTATGTTTTTATCAACCGTCCT | 58.995 | 36.000 | 0.00 | 0.00 | 41.27 | 3.85 |
328 | 329 | 6.256912 | TGGTTATGTTTTTATCAACCGTCC | 57.743 | 37.500 | 0.00 | 0.00 | 41.27 | 4.79 |
329 | 330 | 7.531716 | TCATGGTTATGTTTTTATCAACCGTC | 58.468 | 34.615 | 0.00 | 0.00 | 41.27 | 4.79 |
330 | 331 | 7.455641 | TCATGGTTATGTTTTTATCAACCGT | 57.544 | 32.000 | 0.00 | 0.00 | 41.27 | 4.83 |
338 | 339 | 9.938670 | GCACGTATTATCATGGTTATGTTTTTA | 57.061 | 29.630 | 0.00 | 0.00 | 35.73 | 1.52 |
339 | 340 | 7.642194 | CGCACGTATTATCATGGTTATGTTTTT | 59.358 | 33.333 | 0.00 | 0.00 | 35.73 | 1.94 |
340 | 341 | 7.129622 | CGCACGTATTATCATGGTTATGTTTT | 58.870 | 34.615 | 0.00 | 0.00 | 35.73 | 2.43 |
341 | 342 | 6.259167 | ACGCACGTATTATCATGGTTATGTTT | 59.741 | 34.615 | 0.00 | 0.00 | 35.73 | 2.83 |
342 | 343 | 5.756347 | ACGCACGTATTATCATGGTTATGTT | 59.244 | 36.000 | 0.00 | 0.00 | 35.73 | 2.71 |
343 | 344 | 5.294356 | ACGCACGTATTATCATGGTTATGT | 58.706 | 37.500 | 0.00 | 0.00 | 35.73 | 2.29 |
344 | 345 | 5.839262 | ACGCACGTATTATCATGGTTATG | 57.161 | 39.130 | 0.00 | 0.00 | 35.57 | 1.90 |
345 | 346 | 5.333798 | GCAACGCACGTATTATCATGGTTAT | 60.334 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
346 | 347 | 4.025563 | GCAACGCACGTATTATCATGGTTA | 60.026 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
347 | 348 | 3.242608 | GCAACGCACGTATTATCATGGTT | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
348 | 349 | 2.286833 | GCAACGCACGTATTATCATGGT | 59.713 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
349 | 350 | 2.286563 | TGCAACGCACGTATTATCATGG | 59.713 | 45.455 | 0.00 | 0.00 | 31.71 | 3.66 |
350 | 351 | 3.584095 | TGCAACGCACGTATTATCATG | 57.416 | 42.857 | 0.00 | 0.00 | 31.71 | 3.07 |
368 | 369 | 3.924686 | AGTACTAGTAAACATGCACGTGC | 59.075 | 43.478 | 33.11 | 33.11 | 42.50 | 5.34 |
369 | 370 | 6.320171 | ACTAGTACTAGTAAACATGCACGTG | 58.680 | 40.000 | 29.96 | 12.28 | 43.98 | 4.49 |
370 | 371 | 6.506500 | ACTAGTACTAGTAAACATGCACGT | 57.493 | 37.500 | 29.96 | 5.39 | 43.98 | 4.49 |
396 | 397 | 9.550406 | AGTAACTACAAGTGCACATTTTAGTTA | 57.450 | 29.630 | 24.73 | 24.73 | 32.16 | 2.24 |
397 | 398 | 8.446599 | AGTAACTACAAGTGCACATTTTAGTT | 57.553 | 30.769 | 25.92 | 25.92 | 33.85 | 2.24 |
398 | 399 | 9.204570 | CTAGTAACTACAAGTGCACATTTTAGT | 57.795 | 33.333 | 21.04 | 17.68 | 0.00 | 2.24 |
399 | 400 | 9.419297 | TCTAGTAACTACAAGTGCACATTTTAG | 57.581 | 33.333 | 21.04 | 17.11 | 0.00 | 1.85 |
400 | 401 | 9.767228 | TTCTAGTAACTACAAGTGCACATTTTA | 57.233 | 29.630 | 21.04 | 7.10 | 0.00 | 1.52 |
401 | 402 | 8.671384 | TTCTAGTAACTACAAGTGCACATTTT | 57.329 | 30.769 | 21.04 | 1.11 | 0.00 | 1.82 |
402 | 403 | 8.148351 | TCTTCTAGTAACTACAAGTGCACATTT | 58.852 | 33.333 | 21.04 | 2.15 | 0.00 | 2.32 |
403 | 404 | 7.667557 | TCTTCTAGTAACTACAAGTGCACATT | 58.332 | 34.615 | 21.04 | 7.66 | 0.00 | 2.71 |
404 | 405 | 7.039644 | ACTCTTCTAGTAACTACAAGTGCACAT | 60.040 | 37.037 | 21.04 | 3.48 | 36.36 | 3.21 |
405 | 406 | 6.264744 | ACTCTTCTAGTAACTACAAGTGCACA | 59.735 | 38.462 | 21.04 | 0.00 | 36.36 | 4.57 |
406 | 407 | 6.679843 | ACTCTTCTAGTAACTACAAGTGCAC | 58.320 | 40.000 | 9.40 | 9.40 | 36.36 | 4.57 |
407 | 408 | 6.896021 | ACTCTTCTAGTAACTACAAGTGCA | 57.104 | 37.500 | 0.00 | 0.00 | 36.36 | 4.57 |
408 | 409 | 7.485595 | GCTAACTCTTCTAGTAACTACAAGTGC | 59.514 | 40.741 | 0.00 | 0.00 | 37.50 | 4.40 |
409 | 410 | 8.732531 | AGCTAACTCTTCTAGTAACTACAAGTG | 58.267 | 37.037 | 0.00 | 0.00 | 37.50 | 3.16 |
410 | 411 | 8.866970 | AGCTAACTCTTCTAGTAACTACAAGT | 57.133 | 34.615 | 0.00 | 0.00 | 37.50 | 3.16 |
413 | 414 | 9.956640 | ACTTAGCTAACTCTTCTAGTAACTACA | 57.043 | 33.333 | 0.86 | 0.00 | 37.50 | 2.74 |
441 | 442 | 8.881262 | AGGTTTATGTAATAAGTATGCTAGGCT | 58.119 | 33.333 | 0.00 | 0.00 | 40.40 | 4.58 |
442 | 443 | 8.936864 | CAGGTTTATGTAATAAGTATGCTAGGC | 58.063 | 37.037 | 0.00 | 0.00 | 40.40 | 3.93 |
446 | 447 | 7.661847 | GCCTCAGGTTTATGTAATAAGTATGCT | 59.338 | 37.037 | 0.00 | 0.00 | 40.40 | 3.79 |
447 | 448 | 7.661847 | AGCCTCAGGTTTATGTAATAAGTATGC | 59.338 | 37.037 | 0.00 | 0.00 | 40.40 | 3.14 |
450 | 451 | 8.645110 | GGTAGCCTCAGGTTTATGTAATAAGTA | 58.355 | 37.037 | 0.00 | 0.00 | 40.40 | 2.24 |
451 | 452 | 7.506971 | GGTAGCCTCAGGTTTATGTAATAAGT | 58.493 | 38.462 | 0.00 | 0.00 | 40.40 | 2.24 |
452 | 453 | 6.645415 | CGGTAGCCTCAGGTTTATGTAATAAG | 59.355 | 42.308 | 0.00 | 0.00 | 40.40 | 1.73 |
453 | 454 | 6.098695 | ACGGTAGCCTCAGGTTTATGTAATAA | 59.901 | 38.462 | 0.00 | 0.00 | 36.92 | 1.40 |
454 | 455 | 5.599656 | ACGGTAGCCTCAGGTTTATGTAATA | 59.400 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
455 | 456 | 4.407945 | ACGGTAGCCTCAGGTTTATGTAAT | 59.592 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
456 | 457 | 3.770933 | ACGGTAGCCTCAGGTTTATGTAA | 59.229 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
457 | 458 | 3.368248 | ACGGTAGCCTCAGGTTTATGTA | 58.632 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
458 | 459 | 2.185387 | ACGGTAGCCTCAGGTTTATGT | 58.815 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
459 | 460 | 2.981859 | ACGGTAGCCTCAGGTTTATG | 57.018 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
460 | 461 | 2.697229 | GGTACGGTAGCCTCAGGTTTAT | 59.303 | 50.000 | 6.08 | 0.00 | 0.00 | 1.40 |
461 | 462 | 2.102578 | GGTACGGTAGCCTCAGGTTTA | 58.897 | 52.381 | 6.08 | 0.00 | 0.00 | 2.01 |
462 | 463 | 0.900421 | GGTACGGTAGCCTCAGGTTT | 59.100 | 55.000 | 6.08 | 0.00 | 0.00 | 3.27 |
463 | 464 | 0.040794 | AGGTACGGTAGCCTCAGGTT | 59.959 | 55.000 | 13.34 | 0.00 | 0.00 | 3.50 |
464 | 465 | 0.921896 | TAGGTACGGTAGCCTCAGGT | 59.078 | 55.000 | 13.34 | 0.00 | 36.38 | 4.00 |
465 | 466 | 1.606903 | CTAGGTACGGTAGCCTCAGG | 58.393 | 60.000 | 13.34 | 0.00 | 36.38 | 3.86 |
466 | 467 | 0.953003 | GCTAGGTACGGTAGCCTCAG | 59.047 | 60.000 | 13.34 | 9.57 | 37.52 | 3.35 |
467 | 468 | 3.106738 | GCTAGGTACGGTAGCCTCA | 57.893 | 57.895 | 13.34 | 0.00 | 37.52 | 3.86 |
471 | 472 | 0.754587 | ACAGGGCTAGGTACGGTAGC | 60.755 | 60.000 | 14.61 | 14.61 | 41.96 | 3.58 |
472 | 473 | 1.772836 | AACAGGGCTAGGTACGGTAG | 58.227 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
473 | 474 | 2.936202 | CTAACAGGGCTAGGTACGGTA | 58.064 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
474 | 475 | 1.772836 | CTAACAGGGCTAGGTACGGT | 58.227 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
475 | 476 | 0.388294 | GCTAACAGGGCTAGGTACGG | 59.612 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
476 | 477 | 1.337387 | GAGCTAACAGGGCTAGGTACG | 59.663 | 57.143 | 0.00 | 0.00 | 40.40 | 3.67 |
477 | 478 | 2.668625 | AGAGCTAACAGGGCTAGGTAC | 58.331 | 52.381 | 0.00 | 0.00 | 40.40 | 3.34 |
478 | 479 | 4.743705 | ATAGAGCTAACAGGGCTAGGTA | 57.256 | 45.455 | 0.00 | 0.00 | 40.40 | 3.08 |
479 | 480 | 3.621682 | ATAGAGCTAACAGGGCTAGGT | 57.378 | 47.619 | 0.00 | 0.00 | 40.40 | 3.08 |
480 | 481 | 4.142049 | GCATATAGAGCTAACAGGGCTAGG | 60.142 | 50.000 | 0.00 | 0.00 | 40.40 | 3.02 |
486 | 487 | 6.749139 | TGTTACTGCATATAGAGCTAACAGG | 58.251 | 40.000 | 9.09 | 0.00 | 0.00 | 4.00 |
489 | 490 | 7.360438 | GGCATTGTTACTGCATATAGAGCTAAC | 60.360 | 40.741 | 0.00 | 4.25 | 41.47 | 2.34 |
520 | 523 | 3.826466 | CGCAGAAAGATTTTCAAGGACC | 58.174 | 45.455 | 4.56 | 0.00 | 0.00 | 4.46 |
557 | 560 | 1.718280 | AAGGATAGAACCCCCTAGCG | 58.282 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
558 | 561 | 4.906060 | TCTTTAAGGATAGAACCCCCTAGC | 59.094 | 45.833 | 0.00 | 0.00 | 0.00 | 3.42 |
559 | 562 | 6.013293 | CCATCTTTAAGGATAGAACCCCCTAG | 60.013 | 46.154 | 0.00 | 0.00 | 0.00 | 3.02 |
560 | 563 | 5.850028 | CCATCTTTAAGGATAGAACCCCCTA | 59.150 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
561 | 564 | 4.665483 | CCATCTTTAAGGATAGAACCCCCT | 59.335 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
562 | 565 | 4.663592 | TCCATCTTTAAGGATAGAACCCCC | 59.336 | 45.833 | 0.00 | 0.00 | 0.00 | 5.40 |
563 | 566 | 5.906772 | TCCATCTTTAAGGATAGAACCCC | 57.093 | 43.478 | 0.00 | 0.00 | 0.00 | 4.95 |
564 | 567 | 6.901300 | ACTTCCATCTTTAAGGATAGAACCC | 58.099 | 40.000 | 4.68 | 0.00 | 33.10 | 4.11 |
565 | 568 | 7.565680 | TGACTTCCATCTTTAAGGATAGAACC | 58.434 | 38.462 | 4.68 | 2.08 | 33.10 | 3.62 |
583 | 586 | 3.614092 | TGGATCTGCAGAAATGACTTCC | 58.386 | 45.455 | 22.50 | 20.47 | 34.21 | 3.46 |
620 | 623 | 0.738975 | CCATGGAGTTGCTCATGCTG | 59.261 | 55.000 | 5.56 | 0.00 | 40.48 | 4.41 |
625 | 634 | 1.545428 | GGTTGACCATGGAGTTGCTCA | 60.545 | 52.381 | 21.47 | 7.65 | 35.64 | 4.26 |
656 | 665 | 4.083537 | TGGATCGTTTTGACTTGCATGTAC | 60.084 | 41.667 | 5.05 | 0.00 | 0.00 | 2.90 |
672 | 681 | 1.019278 | GTGTGCCATCGTTGGATCGT | 61.019 | 55.000 | 16.83 | 0.00 | 46.92 | 3.73 |
722 | 731 | 1.512926 | CGCTTTCCACTTGTGCTACT | 58.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
723 | 732 | 0.110192 | GCGCTTTCCACTTGTGCTAC | 60.110 | 55.000 | 0.00 | 0.00 | 34.76 | 3.58 |
780 | 789 | 3.032033 | GCTGTGTTGCTTTGCCGC | 61.032 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
847 | 856 | 7.762615 | TGAGATTATTTTTACCTGGTCGTGTAG | 59.237 | 37.037 | 0.63 | 0.00 | 0.00 | 2.74 |
934 | 950 | 1.550976 | TGTGTGTGTGTGTGGTGTCTA | 59.449 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
960 | 1014 | 1.099689 | CAACAAACGAGGGGTGTTGT | 58.900 | 50.000 | 7.44 | 0.00 | 44.51 | 3.32 |
1034 | 1101 | 4.954970 | CCACCTTGGCCAGCGTGT | 62.955 | 66.667 | 24.70 | 11.68 | 0.00 | 4.49 |
1137 | 1235 | 1.880340 | CATCGACCGGAAGCTCAGC | 60.880 | 63.158 | 9.46 | 0.00 | 0.00 | 4.26 |
1188 | 1286 | 3.458163 | GACGGGCACATCGGAGGA | 61.458 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1189 | 1287 | 4.873129 | CGACGGGCACATCGGAGG | 62.873 | 72.222 | 0.00 | 0.00 | 35.31 | 4.30 |
1269 | 1368 | 1.747355 | CCAAGCAATTCAATCCTCGCT | 59.253 | 47.619 | 0.00 | 0.00 | 0.00 | 4.93 |
1331 | 1430 | 1.068588 | TCCACGACAACTCAGAACAGG | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1358 | 1457 | 1.135344 | GTAGTGACTCCGAACAGAGCC | 60.135 | 57.143 | 0.00 | 0.00 | 37.39 | 4.70 |
1359 | 1458 | 1.540267 | TGTAGTGACTCCGAACAGAGC | 59.460 | 52.381 | 0.00 | 0.00 | 37.39 | 4.09 |
1360 | 1459 | 3.253677 | AGTTGTAGTGACTCCGAACAGAG | 59.746 | 47.826 | 0.00 | 0.00 | 39.91 | 3.35 |
1361 | 1460 | 3.220110 | AGTTGTAGTGACTCCGAACAGA | 58.780 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1362 | 1461 | 3.566523 | GAGTTGTAGTGACTCCGAACAG | 58.433 | 50.000 | 0.00 | 0.00 | 38.02 | 3.16 |
1363 | 1462 | 3.637998 | GAGTTGTAGTGACTCCGAACA | 57.362 | 47.619 | 0.00 | 0.00 | 38.02 | 3.18 |
1369 | 1468 | 8.025445 | TCGTATTTTTAGGAGTTGTAGTGACTC | 58.975 | 37.037 | 0.00 | 0.00 | 42.16 | 3.36 |
1370 | 1469 | 7.889469 | TCGTATTTTTAGGAGTTGTAGTGACT | 58.111 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
1371 | 1470 | 8.592998 | CATCGTATTTTTAGGAGTTGTAGTGAC | 58.407 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
1372 | 1471 | 8.525316 | TCATCGTATTTTTAGGAGTTGTAGTGA | 58.475 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1373 | 1472 | 8.697846 | TCATCGTATTTTTAGGAGTTGTAGTG | 57.302 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1374 | 1473 | 7.491696 | GCTCATCGTATTTTTAGGAGTTGTAGT | 59.508 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1375 | 1474 | 7.707035 | AGCTCATCGTATTTTTAGGAGTTGTAG | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1376 | 1475 | 7.491372 | CAGCTCATCGTATTTTTAGGAGTTGTA | 59.509 | 37.037 | 0.00 | 0.00 | 30.64 | 2.41 |
1377 | 1476 | 6.313905 | CAGCTCATCGTATTTTTAGGAGTTGT | 59.686 | 38.462 | 0.00 | 0.00 | 30.64 | 3.32 |
1378 | 1477 | 6.709643 | CAGCTCATCGTATTTTTAGGAGTTG | 58.290 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1379 | 1478 | 5.294552 | GCAGCTCATCGTATTTTTAGGAGTT | 59.705 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1380 | 1479 | 4.811557 | GCAGCTCATCGTATTTTTAGGAGT | 59.188 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1381 | 1480 | 4.084849 | CGCAGCTCATCGTATTTTTAGGAG | 60.085 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
1382 | 1481 | 3.802139 | CGCAGCTCATCGTATTTTTAGGA | 59.198 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
1383 | 1482 | 3.059597 | CCGCAGCTCATCGTATTTTTAGG | 60.060 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
1384 | 1483 | 3.802139 | TCCGCAGCTCATCGTATTTTTAG | 59.198 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
1385 | 1484 | 3.787785 | TCCGCAGCTCATCGTATTTTTA | 58.212 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
1386 | 1485 | 2.609459 | CTCCGCAGCTCATCGTATTTTT | 59.391 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
1387 | 1486 | 2.205074 | CTCCGCAGCTCATCGTATTTT | 58.795 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
1388 | 1487 | 1.858091 | CTCCGCAGCTCATCGTATTT | 58.142 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1389 | 1488 | 0.598680 | GCTCCGCAGCTCATCGTATT | 60.599 | 55.000 | 0.00 | 0.00 | 43.09 | 1.89 |
1390 | 1489 | 1.006805 | GCTCCGCAGCTCATCGTAT | 60.007 | 57.895 | 0.00 | 0.00 | 43.09 | 3.06 |
1391 | 1490 | 2.413351 | GCTCCGCAGCTCATCGTA | 59.587 | 61.111 | 0.00 | 0.00 | 43.09 | 3.43 |
1400 | 1499 | 1.746991 | GGAAAGGGAAGCTCCGCAG | 60.747 | 63.158 | 0.00 | 0.00 | 37.43 | 5.18 |
1401 | 1500 | 2.351276 | GGAAAGGGAAGCTCCGCA | 59.649 | 61.111 | 0.00 | 0.00 | 37.43 | 5.69 |
1402 | 1501 | 2.438614 | GGGAAAGGGAAGCTCCGC | 60.439 | 66.667 | 0.00 | 0.00 | 37.43 | 5.54 |
1403 | 1502 | 0.960861 | GTTGGGAAAGGGAAGCTCCG | 60.961 | 60.000 | 0.00 | 0.00 | 37.43 | 4.63 |
1404 | 1503 | 0.405973 | AGTTGGGAAAGGGAAGCTCC | 59.594 | 55.000 | 0.00 | 0.00 | 35.23 | 4.70 |
1405 | 1504 | 1.614583 | GGAGTTGGGAAAGGGAAGCTC | 60.615 | 57.143 | 0.00 | 0.00 | 0.00 | 4.09 |
1406 | 1505 | 0.405973 | GGAGTTGGGAAAGGGAAGCT | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
1407 | 1506 | 0.112412 | TGGAGTTGGGAAAGGGAAGC | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1408 | 1507 | 2.450476 | CATGGAGTTGGGAAAGGGAAG | 58.550 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
1409 | 1508 | 1.549950 | GCATGGAGTTGGGAAAGGGAA | 60.550 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
1410 | 1509 | 0.039618 | GCATGGAGTTGGGAAAGGGA | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1411 | 1510 | 0.040204 | AGCATGGAGTTGGGAAAGGG | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1412 | 1511 | 1.928868 | AAGCATGGAGTTGGGAAAGG | 58.071 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1413 | 1512 | 4.341366 | AAAAAGCATGGAGTTGGGAAAG | 57.659 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
1441 | 1540 | 0.902048 | TCACTCCACTCCCAGAGCTG | 60.902 | 60.000 | 0.00 | 0.00 | 33.18 | 4.24 |
1442 | 1541 | 0.042431 | ATCACTCCACTCCCAGAGCT | 59.958 | 55.000 | 0.00 | 0.00 | 33.18 | 4.09 |
1443 | 1542 | 0.177604 | CATCACTCCACTCCCAGAGC | 59.822 | 60.000 | 0.00 | 0.00 | 33.18 | 4.09 |
1444 | 1543 | 0.829333 | CCATCACTCCACTCCCAGAG | 59.171 | 60.000 | 0.00 | 0.00 | 36.16 | 3.35 |
1445 | 1544 | 0.413434 | TCCATCACTCCACTCCCAGA | 59.587 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1446 | 1545 | 0.829333 | CTCCATCACTCCACTCCCAG | 59.171 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1447 | 1546 | 0.117140 | ACTCCATCACTCCACTCCCA | 59.883 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
1448 | 1547 | 0.539051 | CACTCCATCACTCCACTCCC | 59.461 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1449 | 1548 | 0.539051 | CCACTCCATCACTCCACTCC | 59.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1450 | 1549 | 1.480137 | CTCCACTCCATCACTCCACTC | 59.520 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
1451 | 1550 | 1.566211 | CTCCACTCCATCACTCCACT | 58.434 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1452 | 1551 | 0.539051 | CCTCCACTCCATCACTCCAC | 59.461 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1453 | 1552 | 0.618680 | CCCTCCACTCCATCACTCCA | 60.619 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1454 | 1553 | 0.618968 | ACCCTCCACTCCATCACTCC | 60.619 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1455 | 1554 | 0.827368 | GACCCTCCACTCCATCACTC | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1456 | 1555 | 0.415429 | AGACCCTCCACTCCATCACT | 59.585 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1457 | 1556 | 0.827368 | GAGACCCTCCACTCCATCAC | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1458 | 1557 | 3.306902 | GAGACCCTCCACTCCATCA | 57.693 | 57.895 | 0.00 | 0.00 | 0.00 | 3.07 |
1467 | 1566 | 1.192803 | AACCTGTTCGGAGACCCTCC | 61.193 | 60.000 | 2.97 | 2.97 | 46.44 | 4.30 |
1468 | 1567 | 0.246910 | GAACCTGTTCGGAGACCCTC | 59.753 | 60.000 | 0.00 | 0.00 | 34.32 | 4.30 |
1469 | 1568 | 0.178929 | AGAACCTGTTCGGAGACCCT | 60.179 | 55.000 | 4.49 | 0.00 | 43.97 | 4.34 |
1470 | 1569 | 0.685660 | AAGAACCTGTTCGGAGACCC | 59.314 | 55.000 | 4.49 | 0.00 | 43.97 | 4.46 |
1471 | 1570 | 3.889520 | ATAAGAACCTGTTCGGAGACC | 57.110 | 47.619 | 4.49 | 0.00 | 43.97 | 3.85 |
1472 | 1571 | 4.389077 | CACAATAAGAACCTGTTCGGAGAC | 59.611 | 45.833 | 4.49 | 0.00 | 43.97 | 3.36 |
1473 | 1572 | 4.562757 | CCACAATAAGAACCTGTTCGGAGA | 60.563 | 45.833 | 4.49 | 0.00 | 43.97 | 3.71 |
1474 | 1573 | 3.684788 | CCACAATAAGAACCTGTTCGGAG | 59.315 | 47.826 | 4.49 | 0.00 | 43.97 | 4.63 |
1475 | 1574 | 3.325425 | TCCACAATAAGAACCTGTTCGGA | 59.675 | 43.478 | 4.49 | 1.34 | 43.97 | 4.55 |
1476 | 1575 | 3.670625 | TCCACAATAAGAACCTGTTCGG | 58.329 | 45.455 | 4.49 | 0.00 | 43.97 | 4.30 |
1477 | 1576 | 5.880054 | AATCCACAATAAGAACCTGTTCG | 57.120 | 39.130 | 4.49 | 0.00 | 43.97 | 3.95 |
1478 | 1577 | 6.863126 | CACAAATCCACAATAAGAACCTGTTC | 59.137 | 38.462 | 1.75 | 1.75 | 39.78 | 3.18 |
1479 | 1578 | 6.239289 | CCACAAATCCACAATAAGAACCTGTT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
1480 | 1579 | 5.243730 | CCACAAATCCACAATAAGAACCTGT | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1481 | 1580 | 5.243730 | ACCACAAATCCACAATAAGAACCTG | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1482 | 1581 | 5.393866 | ACCACAAATCCACAATAAGAACCT | 58.606 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
1483 | 1582 | 5.722021 | ACCACAAATCCACAATAAGAACC | 57.278 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
1484 | 1583 | 6.744112 | TCAACCACAAATCCACAATAAGAAC | 58.256 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1485 | 1584 | 6.775142 | TCTCAACCACAAATCCACAATAAGAA | 59.225 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1486 | 1585 | 6.303054 | TCTCAACCACAAATCCACAATAAGA | 58.697 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1487 | 1586 | 6.573664 | TCTCAACCACAAATCCACAATAAG | 57.426 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
1488 | 1587 | 6.947733 | AGATCTCAACCACAAATCCACAATAA | 59.052 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1489 | 1588 | 6.375174 | CAGATCTCAACCACAAATCCACAATA | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
1490 | 1589 | 5.184479 | CAGATCTCAACCACAAATCCACAAT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1491 | 1590 | 4.520111 | CAGATCTCAACCACAAATCCACAA | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
1492 | 1591 | 4.074259 | CAGATCTCAACCACAAATCCACA | 58.926 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
1493 | 1592 | 4.326826 | TCAGATCTCAACCACAAATCCAC | 58.673 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1494 | 1593 | 4.286808 | TCTCAGATCTCAACCACAAATCCA | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1495 | 1594 | 4.836825 | TCTCAGATCTCAACCACAAATCC | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1496 | 1595 | 6.596888 | TGATTCTCAGATCTCAACCACAAATC | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
1497 | 1596 | 6.479006 | TGATTCTCAGATCTCAACCACAAAT | 58.521 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1498 | 1597 | 5.868454 | TGATTCTCAGATCTCAACCACAAA | 58.132 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1512 | 1611 | 8.461249 | AATGGGAGTTCAAATATGATTCTCAG | 57.539 | 34.615 | 11.02 | 0.00 | 38.00 | 3.35 |
1660 | 1764 | 7.201635 | GGGAACTGAAGTTTACTACAAACGAAA | 60.202 | 37.037 | 0.00 | 0.00 | 38.56 | 3.46 |
1664 | 1768 | 5.049886 | CCGGGAACTGAAGTTTACTACAAAC | 60.050 | 44.000 | 0.00 | 0.00 | 38.56 | 2.93 |
1679 | 1783 | 3.267483 | CTGGTGTATTAACCGGGAACTG | 58.733 | 50.000 | 6.32 | 0.00 | 43.73 | 3.16 |
1681 | 1785 | 2.011947 | GCTGGTGTATTAACCGGGAAC | 58.988 | 52.381 | 6.32 | 0.00 | 45.40 | 3.62 |
1713 | 1820 | 2.939103 | CCTCCCATTAAAGTTGCTCTCG | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1736 | 1843 | 2.076863 | GATGACTCAAACGGACAAGGG | 58.923 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
1750 | 1860 | 3.703001 | ACATTTTCTGTCCGGATGACT | 57.297 | 42.857 | 7.81 | 0.00 | 44.75 | 3.41 |
1786 | 1896 | 1.669760 | GCACGGACGTCCATTTGGA | 60.670 | 57.895 | 32.80 | 0.00 | 43.08 | 3.53 |
1804 | 1914 | 4.379243 | AGACGAACAGCAGGCGGG | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1821 | 1931 | 2.522367 | GGGTCAGGTTTGGGTCGGA | 61.522 | 63.158 | 0.00 | 0.00 | 0.00 | 4.55 |
1836 | 1946 | 3.327464 | CCCATTTGTTTCCAGATTTGGGT | 59.673 | 43.478 | 1.81 | 0.00 | 45.10 | 4.51 |
1848 | 1958 | 1.538075 | CCGCTTCGTACCCATTTGTTT | 59.462 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1919 | 2029 | 0.249911 | GTCGCTGACATATGGGACCC | 60.250 | 60.000 | 2.45 | 2.45 | 39.30 | 4.46 |
2183 | 2361 | 2.743718 | CAACCACCCTCTGCTCGT | 59.256 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
2198 | 2376 | 4.986645 | TCGCGCCTTCTGCTGCAA | 62.987 | 61.111 | 0.00 | 0.00 | 38.74 | 4.08 |
2204 | 2382 | 2.884685 | CTCTGCTCGCGCCTTCTG | 60.885 | 66.667 | 0.00 | 0.00 | 34.43 | 3.02 |
2250 | 2428 | 2.042435 | CGCCCCTTCTCTCTCCCT | 60.042 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
2252 | 2430 | 3.855853 | GCCGCCCCTTCTCTCTCC | 61.856 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.