Multiple sequence alignment - TraesCS3B01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G331200 chr3B 100.000 5535 0 0 1 5535 536393301 536387767 0.000000e+00 10222.0
1 TraesCS3B01G331200 chr3B 81.166 669 87 21 4893 5535 36512630 36511975 8.280000e-138 501.0
2 TraesCS3B01G331200 chr3B 94.737 152 7 1 1 151 794247888 794248039 9.270000e-58 235.0
3 TraesCS3B01G331200 chr3B 92.647 68 4 1 720 787 536424387 536424321 4.560000e-16 97.1
4 TraesCS3B01G331200 chr3D 89.862 3699 227 66 482 4104 410416708 410413082 0.000000e+00 4617.0
5 TraesCS3B01G331200 chr3D 94.885 391 19 1 4178 4567 410413076 410412686 1.320000e-170 610.0
6 TraesCS3B01G331200 chr3D 93.878 343 11 2 144 485 410417078 410416745 4.950000e-140 508.0
7 TraesCS3B01G331200 chr3D 89.447 199 15 4 4705 4898 410412469 410412272 4.280000e-61 246.0
8 TraesCS3B01G331200 chr3D 85.590 229 26 5 4901 5126 560203576 560203800 3.330000e-57 233.0
9 TraesCS3B01G331200 chr3D 83.857 223 32 4 4900 5120 560214602 560214382 5.620000e-50 209.0
10 TraesCS3B01G331200 chr3D 86.585 164 12 2 4553 4716 410412660 410412507 7.370000e-39 172.0
11 TraesCS3B01G331200 chr3D 92.381 105 8 0 483 587 410418508 410418404 3.450000e-32 150.0
12 TraesCS3B01G331200 chr3D 82.609 92 10 3 654 744 410418369 410418283 5.950000e-10 76.8
13 TraesCS3B01G331200 chr3A 88.331 3248 174 61 144 3295 541242763 541245901 0.000000e+00 3709.0
14 TraesCS3B01G331200 chr3A 92.338 757 45 7 3347 4098 541245915 541246663 0.000000e+00 1064.0
15 TraesCS3B01G331200 chr3A 95.304 362 11 3 4178 4533 541246675 541247036 2.240000e-158 569.0
16 TraesCS3B01G331200 chr3A 91.213 239 18 2 4553 4791 541247080 541247315 6.920000e-84 322.0
17 TraesCS3B01G331200 chr3A 86.869 198 14 5 199 387 541240972 541241166 1.560000e-50 211.0
18 TraesCS3B01G331200 chr3A 82.960 223 31 6 4898 5116 195452516 195452297 1.570000e-45 195.0
19 TraesCS3B01G331200 chr3A 83.243 185 14 10 483 653 541241297 541241478 2.670000e-33 154.0
20 TraesCS3B01G331200 chrUn 87.988 641 67 9 4898 5534 368065323 368065957 0.000000e+00 749.0
21 TraesCS3B01G331200 chr1A 87.363 641 71 9 4898 5534 504022336 504022970 0.000000e+00 726.0
22 TraesCS3B01G331200 chr7A 82.439 615 84 15 4905 5505 486933972 486934576 2.960000e-142 516.0
23 TraesCS3B01G331200 chr5D 79.790 668 99 25 4893 5535 229182246 229181590 2.350000e-123 453.0
24 TraesCS3B01G331200 chr5D 79.367 664 110 20 4890 5535 410302215 410301561 5.090000e-120 442.0
25 TraesCS3B01G331200 chr5D 77.744 665 106 33 4899 5535 375141191 375140541 2.440000e-98 370.0
26 TraesCS3B01G331200 chr2B 95.333 150 6 1 1 149 45289134 45288985 2.580000e-58 237.0
27 TraesCS3B01G331200 chr2B 93.210 162 9 2 1 160 176251836 176251997 2.580000e-58 237.0
28 TraesCS3B01G331200 chr2B 93.125 160 10 1 1 159 704534661 704534502 3.330000e-57 233.0
29 TraesCS3B01G331200 chr5B 92.593 162 10 2 1 160 393769949 393769788 1.200000e-56 231.0
30 TraesCS3B01G331200 chr4B 92.593 162 10 2 1 160 427626546 427626707 1.200000e-56 231.0
31 TraesCS3B01G331200 chr4B 92.547 161 9 3 1 159 417885593 417885434 1.550000e-55 228.0
32 TraesCS3B01G331200 chr7B 92.547 161 9 3 1 159 229406858 229406699 1.550000e-55 228.0
33 TraesCS3B01G331200 chr4A 92.500 160 10 2 1 159 700084431 700084273 1.550000e-55 228.0
34 TraesCS3B01G331200 chr6B 83.929 224 31 5 4901 5122 718374592 718374812 5.620000e-50 209.0
35 TraesCS3B01G331200 chr5A 80.556 252 39 8 4896 5144 152822633 152822389 9.470000e-43 185.0
36 TraesCS3B01G331200 chr2A 83.092 207 29 5 4898 5102 32967452 32967654 3.410000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G331200 chr3B 536387767 536393301 5534 True 10222.000000 10222 100.000000 1 5535 1 chr3B.!!$R2 5534
1 TraesCS3B01G331200 chr3B 36511975 36512630 655 True 501.000000 501 81.166000 4893 5535 1 chr3B.!!$R1 642
2 TraesCS3B01G331200 chr3D 410412272 410418508 6236 True 911.400000 4617 89.949571 144 4898 7 chr3D.!!$R2 4754
3 TraesCS3B01G331200 chr3A 541240972 541247315 6343 False 1004.833333 3709 89.549667 144 4791 6 chr3A.!!$F1 4647
4 TraesCS3B01G331200 chrUn 368065323 368065957 634 False 749.000000 749 87.988000 4898 5534 1 chrUn.!!$F1 636
5 TraesCS3B01G331200 chr1A 504022336 504022970 634 False 726.000000 726 87.363000 4898 5534 1 chr1A.!!$F1 636
6 TraesCS3B01G331200 chr7A 486933972 486934576 604 False 516.000000 516 82.439000 4905 5505 1 chr7A.!!$F1 600
7 TraesCS3B01G331200 chr5D 229181590 229182246 656 True 453.000000 453 79.790000 4893 5535 1 chr5D.!!$R1 642
8 TraesCS3B01G331200 chr5D 410301561 410302215 654 True 442.000000 442 79.367000 4890 5535 1 chr5D.!!$R3 645
9 TraesCS3B01G331200 chr5D 375140541 375141191 650 True 370.000000 370 77.744000 4899 5535 1 chr5D.!!$R2 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 2481 0.036952 AGTTCATGCACACGGAGGAG 60.037 55.0 0.00 0.0 0.00 3.69 F
1163 2956 0.955428 TTCGTCTTCCCATGCTGTGC 60.955 55.0 0.00 0.0 0.00 4.57 F
2253 4108 0.108424 AGCTAGAGAACGCCAAGCTG 60.108 55.0 0.00 0.0 41.78 4.24 F
3336 5205 0.026674 CTGCGCCGTGTAATGTGATG 59.973 55.0 4.18 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 4093 0.246086 CTCTCAGCTTGGCGTTCTCT 59.754 55.0 0.0 0.0 0.0 3.10 R
2871 4736 0.670546 CGTCCAGTGTCGATGCCTTT 60.671 55.0 0.0 0.0 0.0 3.11 R
4046 5929 0.035439 TGCAACGATCCTTCCCCTTC 60.035 55.0 0.0 0.0 0.0 3.46 R
4979 6961 0.112412 AAGGGTGCAAGTTTCGGGAT 59.888 50.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.976255 CGAAAACTATGTTTAAATACGAATCCA 57.024 29.630 0.00 0.00 0.00 3.41
44 45 9.763465 AAACTATGTTTAAATACGAATCCAACG 57.237 29.630 0.00 0.00 0.00 4.10
45 46 8.706492 ACTATGTTTAAATACGAATCCAACGA 57.294 30.769 0.00 0.00 34.70 3.85
47 48 7.837202 ATGTTTAAATACGAATCCAACGAGA 57.163 32.000 0.00 0.00 34.70 4.04
49 50 8.929827 TGTTTAAATACGAATCCAACGAGATA 57.070 30.769 0.00 0.00 34.70 1.98
50 51 9.368674 TGTTTAAATACGAATCCAACGAGATAA 57.631 29.630 0.00 0.00 34.70 1.75
57 58 7.611213 ACGAATCCAACGAGATAATTTTTCT 57.389 32.000 0.00 0.00 34.70 2.52
58 59 8.040716 ACGAATCCAACGAGATAATTTTTCTT 57.959 30.769 0.00 0.00 34.70 2.52
59 60 7.962918 ACGAATCCAACGAGATAATTTTTCTTG 59.037 33.333 0.00 3.36 34.70 3.02
60 61 8.175069 CGAATCCAACGAGATAATTTTTCTTGA 58.825 33.333 10.12 0.00 0.00 3.02
62 63 7.737972 TCCAACGAGATAATTTTTCTTGACA 57.262 32.000 10.12 0.00 0.00 3.58
63 64 8.335532 TCCAACGAGATAATTTTTCTTGACAT 57.664 30.769 10.12 0.00 0.00 3.06
64 65 8.236586 TCCAACGAGATAATTTTTCTTGACATG 58.763 33.333 10.12 0.00 0.00 3.21
65 66 7.008628 CCAACGAGATAATTTTTCTTGACATGC 59.991 37.037 10.12 0.00 0.00 4.06
66 67 7.144722 ACGAGATAATTTTTCTTGACATGCA 57.855 32.000 10.12 0.00 0.00 3.96
67 68 7.765307 ACGAGATAATTTTTCTTGACATGCAT 58.235 30.769 10.12 0.00 0.00 3.96
69 70 9.720667 CGAGATAATTTTTCTTGACATGCATTA 57.279 29.630 0.00 0.00 0.00 1.90
77 78 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
79 80 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
80 81 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
81 82 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
82 83 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
83 84 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
124 125 6.969993 TTGGCATAAACTATAAATGGGACC 57.030 37.500 0.00 0.00 0.00 4.46
126 127 7.395525 TGGCATAAACTATAAATGGGACCTA 57.604 36.000 0.00 0.00 0.00 3.08
128 129 9.118367 TGGCATAAACTATAAATGGGACCTATA 57.882 33.333 0.00 0.00 0.00 1.31
129 130 9.969001 GGCATAAACTATAAATGGGACCTATAA 57.031 33.333 0.00 0.00 0.00 0.98
137 138 7.979444 ATAAATGGGACCTATAAACATGACG 57.021 36.000 0.00 0.00 0.00 4.35
139 140 3.376636 TGGGACCTATAAACATGACGGA 58.623 45.455 0.00 0.00 0.00 4.69
140 141 3.386726 TGGGACCTATAAACATGACGGAG 59.613 47.826 0.00 0.00 0.00 4.63
141 142 3.244112 GGGACCTATAAACATGACGGAGG 60.244 52.174 0.00 1.77 0.00 4.30
145 146 5.206587 ACCTATAAACATGACGGAGGTAGT 58.793 41.667 0.00 0.00 34.08 2.73
351 2067 6.471841 CACGCATGCAGCAGTAAATTAAAATA 59.528 34.615 19.57 0.00 46.13 1.40
536 2292 4.039092 CAGTGGGACAGCCTGGGG 62.039 72.222 0.00 0.00 41.80 4.96
581 2337 0.251341 GGGGCATGTCCAGAAACAGT 60.251 55.000 20.13 0.00 36.21 3.55
608 2369 1.885157 CGAATGCTGTGGCCACAAT 59.115 52.632 36.71 26.21 41.33 2.71
660 2432 4.610905 GCATCAGCATCGATCACATTCTTC 60.611 45.833 0.00 0.00 41.58 2.87
693 2465 3.276846 GCACCGTCCGTTGCAGTT 61.277 61.111 4.27 0.00 0.00 3.16
694 2466 2.935955 CACCGTCCGTTGCAGTTC 59.064 61.111 0.00 0.00 0.00 3.01
695 2467 1.885388 CACCGTCCGTTGCAGTTCA 60.885 57.895 0.00 0.00 0.00 3.18
696 2468 1.070786 ACCGTCCGTTGCAGTTCAT 59.929 52.632 0.00 0.00 0.00 2.57
697 2469 1.227999 ACCGTCCGTTGCAGTTCATG 61.228 55.000 0.00 0.00 0.00 3.07
707 2479 2.165380 CAGTTCATGCACACGGAGG 58.835 57.895 0.00 0.00 0.00 4.30
708 2480 0.320683 CAGTTCATGCACACGGAGGA 60.321 55.000 0.00 0.00 0.00 3.71
709 2481 0.036952 AGTTCATGCACACGGAGGAG 60.037 55.000 0.00 0.00 0.00 3.69
710 2482 1.021390 GTTCATGCACACGGAGGAGG 61.021 60.000 0.00 0.00 0.00 4.30
711 2483 2.124983 CATGCACACGGAGGAGGG 60.125 66.667 0.00 0.00 0.00 4.30
712 2484 2.284625 ATGCACACGGAGGAGGGA 60.285 61.111 0.00 0.00 0.00 4.20
713 2485 2.362369 ATGCACACGGAGGAGGGAG 61.362 63.158 0.00 0.00 0.00 4.30
714 2486 3.775654 GCACACGGAGGAGGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
715 2487 2.037367 CACACGGAGGAGGGAGGA 59.963 66.667 0.00 0.00 0.00 3.71
716 2488 2.037527 ACACGGAGGAGGGAGGAC 59.962 66.667 0.00 0.00 0.00 3.85
717 2489 2.760385 CACGGAGGAGGGAGGACC 60.760 72.222 0.00 0.00 40.67 4.46
718 2490 3.273654 ACGGAGGAGGGAGGACCA 61.274 66.667 0.00 0.00 43.89 4.02
759 2531 2.941563 ATCCCTAGCTAACCGCCCGT 62.942 60.000 0.00 0.00 40.39 5.28
790 2566 2.978298 TACCTCCTCCGATCCGCCTG 62.978 65.000 0.00 0.00 0.00 4.85
812 2588 2.367377 CCCAGCTGATCCCTCCCA 60.367 66.667 17.39 0.00 0.00 4.37
813 2589 2.450320 CCCAGCTGATCCCTCCCAG 61.450 68.421 17.39 0.00 0.00 4.45
903 2679 2.421739 CTCCTTATGCCGACCGGG 59.578 66.667 6.32 0.00 39.58 5.73
930 2706 1.281925 ATTGCCCTCTTCGTCCCCAT 61.282 55.000 0.00 0.00 0.00 4.00
946 2722 5.449314 CGTCCCCATAGAAGCTAAGATATCG 60.449 48.000 0.00 0.00 0.00 2.92
957 2733 6.472686 AGCTAAGATATCGGTTGTTTCTCT 57.527 37.500 0.00 0.00 0.00 3.10
959 2735 7.331791 AGCTAAGATATCGGTTGTTTCTCTTT 58.668 34.615 0.00 0.00 0.00 2.52
962 2738 7.835634 AAGATATCGGTTGTTTCTCTTTCTC 57.164 36.000 0.00 0.00 0.00 2.87
963 2739 6.342111 AGATATCGGTTGTTTCTCTTTCTCC 58.658 40.000 0.00 0.00 0.00 3.71
964 2740 4.625607 ATCGGTTGTTTCTCTTTCTCCT 57.374 40.909 0.00 0.00 0.00 3.69
965 2741 3.728845 TCGGTTGTTTCTCTTTCTCCTG 58.271 45.455 0.00 0.00 0.00 3.86
966 2742 2.224314 CGGTTGTTTCTCTTTCTCCTGC 59.776 50.000 0.00 0.00 0.00 4.85
967 2743 3.481453 GGTTGTTTCTCTTTCTCCTGCT 58.519 45.455 0.00 0.00 0.00 4.24
968 2744 4.642429 GGTTGTTTCTCTTTCTCCTGCTA 58.358 43.478 0.00 0.00 0.00 3.49
971 2747 3.580458 TGTTTCTCTTTCTCCTGCTAGCT 59.420 43.478 17.23 0.00 0.00 3.32
972 2748 4.040952 TGTTTCTCTTTCTCCTGCTAGCTT 59.959 41.667 17.23 0.00 0.00 3.74
973 2749 4.464069 TTCTCTTTCTCCTGCTAGCTTC 57.536 45.455 17.23 0.00 0.00 3.86
974 2750 3.435275 TCTCTTTCTCCTGCTAGCTTCA 58.565 45.455 17.23 0.00 0.00 3.02
975 2751 3.446873 TCTCTTTCTCCTGCTAGCTTCAG 59.553 47.826 17.23 8.53 0.00 3.02
976 2752 2.093764 TCTTTCTCCTGCTAGCTTCAGC 60.094 50.000 17.23 1.26 42.15 4.26
998 2778 4.635223 CAATGCTTCAGGGAGATCGATAA 58.365 43.478 0.00 0.00 0.00 1.75
1077 2857 2.308039 GCTTGTCCGTCACACCGAC 61.308 63.158 0.00 0.00 41.62 4.79
1154 2947 2.873133 ATGATCGAGTTCGTCTTCCC 57.127 50.000 1.07 0.00 40.80 3.97
1163 2956 0.955428 TTCGTCTTCCCATGCTGTGC 60.955 55.000 0.00 0.00 0.00 4.57
1190 2983 2.746277 GGTGCGTTCGCCAGGAAT 60.746 61.111 14.44 0.00 42.42 3.01
1345 3138 1.409381 GGAGGAAGAAGAAGGCCATGG 60.409 57.143 7.63 7.63 0.00 3.66
1359 3152 1.106944 CCATGGCGATGGGGGTAAAC 61.107 60.000 19.41 0.00 45.11 2.01
1430 3223 3.118884 TCAGGGTTATGGAAGCGTAAGTC 60.119 47.826 0.00 0.00 41.68 3.01
1471 3264 2.158900 CGATGCCCACTACTTTGGAGAT 60.159 50.000 0.00 0.00 39.24 2.75
1482 3275 3.931578 ACTTTGGAGATTTCAGTCCGAG 58.068 45.455 0.00 0.00 35.37 4.63
1549 3342 4.335315 TGAGAATTTCTTTCAAGCGTGTGT 59.665 37.500 0.00 0.00 36.75 3.72
1581 3402 2.401766 GCGGAACAGGTGGCTGATG 61.402 63.158 0.00 0.00 0.00 3.07
1660 3481 6.357367 TGTTTCCCTGGAAGCTAGAAATATC 58.643 40.000 13.01 0.00 36.51 1.63
1681 3502 9.768662 AATATCTTGAAACTTTTGCAGAAACAT 57.231 25.926 0.00 0.00 0.00 2.71
1684 3505 9.768662 ATCTTGAAACTTTTGCAGAAACATAAT 57.231 25.926 0.00 0.00 0.00 1.28
1703 3524 8.458573 ACATAATACAAAGTGAACTCCAACAA 57.541 30.769 0.00 0.00 0.00 2.83
1705 3526 9.398170 CATAATACAAAGTGAACTCCAACAAAG 57.602 33.333 0.00 0.00 0.00 2.77
1708 3529 4.021544 ACAAAGTGAACTCCAACAAAGCAA 60.022 37.500 0.00 0.00 0.00 3.91
1710 3531 2.099756 AGTGAACTCCAACAAAGCAAGC 59.900 45.455 0.00 0.00 0.00 4.01
1712 3533 2.358898 TGAACTCCAACAAAGCAAGCTC 59.641 45.455 0.00 0.00 0.00 4.09
1716 3537 3.448660 ACTCCAACAAAGCAAGCTCTTTT 59.551 39.130 0.00 0.00 34.31 2.27
1717 3538 4.045636 TCCAACAAAGCAAGCTCTTTTC 57.954 40.909 0.00 0.00 34.31 2.29
1718 3539 3.446873 TCCAACAAAGCAAGCTCTTTTCA 59.553 39.130 0.00 0.00 34.31 2.69
1719 3540 4.081752 TCCAACAAAGCAAGCTCTTTTCAA 60.082 37.500 0.00 0.00 34.31 2.69
1720 3541 4.630940 CCAACAAAGCAAGCTCTTTTCAAA 59.369 37.500 0.00 0.00 34.31 2.69
1745 3566 5.449107 TTCTATAAGCAGTCGTGATACCC 57.551 43.478 0.00 0.00 0.00 3.69
1746 3567 4.726583 TCTATAAGCAGTCGTGATACCCT 58.273 43.478 0.00 0.00 0.00 4.34
1747 3568 3.735237 ATAAGCAGTCGTGATACCCTG 57.265 47.619 0.00 0.00 0.00 4.45
1899 3754 3.365220 CGACGAACTCAGATCAAGGTTTC 59.635 47.826 0.00 0.00 0.00 2.78
1982 3837 3.873361 AGTCACATGCGGATCATTGTTAG 59.127 43.478 0.00 0.00 31.79 2.34
1983 3838 3.623060 GTCACATGCGGATCATTGTTAGT 59.377 43.478 0.00 0.00 31.79 2.24
1984 3839 4.808895 GTCACATGCGGATCATTGTTAGTA 59.191 41.667 0.00 0.00 31.79 1.82
1985 3840 4.808895 TCACATGCGGATCATTGTTAGTAC 59.191 41.667 0.00 0.00 31.79 2.73
1986 3841 3.802139 ACATGCGGATCATTGTTAGTACG 59.198 43.478 0.00 0.00 31.79 3.67
1987 3842 3.513680 TGCGGATCATTGTTAGTACGT 57.486 42.857 0.00 0.00 0.00 3.57
1988 3843 4.635833 TGCGGATCATTGTTAGTACGTA 57.364 40.909 0.00 0.00 0.00 3.57
1989 3844 4.353737 TGCGGATCATTGTTAGTACGTAC 58.646 43.478 18.10 18.10 0.00 3.67
1990 3845 3.732721 GCGGATCATTGTTAGTACGTACC 59.267 47.826 21.80 7.75 0.00 3.34
1991 3846 4.498682 GCGGATCATTGTTAGTACGTACCT 60.499 45.833 21.80 11.74 0.00 3.08
2034 3889 5.989168 AGTAATTTGATCTCACACAACACGA 59.011 36.000 0.00 0.00 0.00 4.35
2035 3890 5.947228 AATTTGATCTCACACAACACGAT 57.053 34.783 0.00 0.00 0.00 3.73
2036 3891 5.947228 ATTTGATCTCACACAACACGATT 57.053 34.783 0.00 0.00 0.00 3.34
2037 3892 7.433708 AATTTGATCTCACACAACACGATTA 57.566 32.000 0.00 0.00 0.00 1.75
2148 4003 1.676967 GAGACAGCTTGCCAAGGGG 60.677 63.158 6.57 0.00 37.18 4.79
2200 4055 2.892640 CCTCGACCGATGGCTTCA 59.107 61.111 1.08 0.00 0.00 3.02
2253 4108 0.108424 AGCTAGAGAACGCCAAGCTG 60.108 55.000 0.00 0.00 41.78 4.24
2323 4178 0.811616 CGATCTGCTGCTACCAACCC 60.812 60.000 0.00 0.00 0.00 4.11
2572 4430 1.141881 CGATGTCTTCCTCCGGTGG 59.858 63.158 16.75 16.75 0.00 4.61
2775 4640 1.479323 TGGTACGTGCCACCTATCTTC 59.521 52.381 22.40 0.00 36.96 2.87
2776 4641 1.535437 GGTACGTGCCACCTATCTTCG 60.535 57.143 18.66 0.00 32.98 3.79
2857 4722 4.042684 AGAACCAATGGAAAGAGCTCTTCT 59.957 41.667 28.58 18.21 37.93 2.85
2871 4736 4.288398 AGCTCTTCTCTTCCATGATCTCA 58.712 43.478 0.00 0.00 0.00 3.27
2883 4748 3.200483 CATGATCTCAAAGGCATCGACA 58.800 45.455 0.00 0.00 0.00 4.35
2955 4820 0.693049 AACTGGTAGCCCAACTCCAG 59.307 55.000 8.28 8.28 43.66 3.86
2961 4826 0.834687 TAGCCCAACTCCAGGACGTT 60.835 55.000 0.00 0.00 0.00 3.99
2966 4831 2.612221 CCCAACTCCAGGACGTTAGTTC 60.612 54.545 0.00 0.00 29.93 3.01
2968 4833 0.886563 ACTCCAGGACGTTAGTTCCG 59.113 55.000 0.00 0.00 0.00 4.30
3025 4891 1.663695 CTTCGGTTGTGTCCTGTTGT 58.336 50.000 0.00 0.00 0.00 3.32
3210 5076 1.627297 GCTGGAAGAATCCCTCGGGT 61.627 60.000 1.18 0.00 45.95 5.28
3217 5083 1.153168 AATCCCTCGGGTTGCATCG 60.153 57.895 1.18 0.00 36.47 3.84
3251 5117 1.205460 AACGGCCATTCCAGGGTACT 61.205 55.000 2.24 0.00 34.01 2.73
3303 5172 6.474427 GGCTAATTTCCAATAAAGTTAACGGC 59.526 38.462 0.00 0.00 0.00 5.68
3309 5178 4.822896 TCCAATAAAGTTAACGGCTGTGTT 59.177 37.500 0.00 0.00 35.86 3.32
3310 5179 5.996513 TCCAATAAAGTTAACGGCTGTGTTA 59.003 36.000 0.00 0.00 33.32 2.41
3333 5202 1.014044 AGACTGCGCCGTGTAATGTG 61.014 55.000 9.91 0.00 0.00 3.21
3335 5204 0.391130 ACTGCGCCGTGTAATGTGAT 60.391 50.000 4.18 0.00 0.00 3.06
3336 5205 0.026674 CTGCGCCGTGTAATGTGATG 59.973 55.000 4.18 0.00 0.00 3.07
3338 5207 1.087202 GCGCCGTGTAATGTGATGGA 61.087 55.000 0.00 0.00 0.00 3.41
3339 5208 1.581934 CGCCGTGTAATGTGATGGAT 58.418 50.000 0.00 0.00 0.00 3.41
3340 5209 1.939934 CGCCGTGTAATGTGATGGATT 59.060 47.619 0.00 0.00 0.00 3.01
3341 5210 2.286359 CGCCGTGTAATGTGATGGATTG 60.286 50.000 0.00 0.00 0.00 2.67
3342 5211 2.541588 GCCGTGTAATGTGATGGATTGC 60.542 50.000 0.00 0.00 0.00 3.56
3343 5212 2.945008 CCGTGTAATGTGATGGATTGCT 59.055 45.455 0.00 0.00 0.00 3.91
3344 5213 3.242837 CCGTGTAATGTGATGGATTGCTG 60.243 47.826 0.00 0.00 0.00 4.41
3345 5214 3.242837 CGTGTAATGTGATGGATTGCTGG 60.243 47.826 0.00 0.00 0.00 4.85
3355 5229 2.229792 TGGATTGCTGGTTGTTGTCTC 58.770 47.619 0.00 0.00 0.00 3.36
3357 5231 2.508526 GATTGCTGGTTGTTGTCTCCT 58.491 47.619 0.00 0.00 0.00 3.69
3358 5232 1.679139 TTGCTGGTTGTTGTCTCCTG 58.321 50.000 0.00 0.00 0.00 3.86
3363 5237 1.133823 TGGTTGTTGTCTCCTGTGCAT 60.134 47.619 0.00 0.00 0.00 3.96
3378 5252 4.449131 CTGTGCATATTGATCAGGTGACT 58.551 43.478 0.00 0.00 46.44 3.41
3546 5420 2.579201 CCGACGAGGGACAGCAAT 59.421 61.111 0.00 0.00 35.97 3.56
3607 5481 0.654683 GCACGATTGCTGGTCATCTC 59.345 55.000 0.00 0.00 46.17 2.75
3701 5577 4.778143 GGCGCACCGGATGACCTT 62.778 66.667 9.46 0.00 0.00 3.50
3709 5585 1.617018 CCGGATGACCTTGAGCCTCA 61.617 60.000 0.00 0.00 0.00 3.86
3885 5761 3.141488 CCGACGTCCCTCCTGGAG 61.141 72.222 17.02 17.02 46.38 3.86
3923 5799 3.834799 CCGGCCCGAGGTAGTCAC 61.835 72.222 3.71 0.00 0.00 3.67
3932 5808 4.367023 GGTAGTCACCCGCGTGCA 62.367 66.667 4.92 0.00 40.04 4.57
3933 5809 3.110178 GTAGTCACCCGCGTGCAC 61.110 66.667 6.82 6.82 40.04 4.57
3934 5810 3.607661 TAGTCACCCGCGTGCACA 61.608 61.111 18.64 0.00 40.04 4.57
3939 5820 3.361977 ACCCGCGTGCACATTTCC 61.362 61.111 18.64 0.00 0.00 3.13
3947 5828 1.130955 GTGCACATTTCCGTTGCAAG 58.869 50.000 13.17 0.00 37.24 4.01
3948 5829 1.028130 TGCACATTTCCGTTGCAAGA 58.972 45.000 0.00 0.00 32.17 3.02
3952 5833 2.483877 CACATTTCCGTTGCAAGAGCTA 59.516 45.455 0.00 0.00 42.74 3.32
3958 5839 4.046938 TCCGTTGCAAGAGCTATAGAAG 57.953 45.455 0.00 0.00 42.74 2.85
3959 5840 3.447586 TCCGTTGCAAGAGCTATAGAAGT 59.552 43.478 0.00 0.00 42.74 3.01
3984 5867 1.157870 GCATAACCGACCACCCATCG 61.158 60.000 0.00 0.00 39.33 3.84
4025 5908 4.379243 CTGGCCGGACGAGCTGTT 62.379 66.667 5.28 0.00 0.00 3.16
4028 5911 2.811317 GCCGGACGAGCTGTTCAG 60.811 66.667 5.05 0.00 0.00 3.02
4035 5918 1.661509 CGAGCTGTTCAGTGTCGCA 60.662 57.895 0.00 0.00 0.00 5.10
4046 5929 0.667487 AGTGTCGCATGAACCTGACG 60.667 55.000 0.00 0.00 34.11 4.35
4058 5941 2.609046 CCTGACGAAGGGGAAGGAT 58.391 57.895 0.00 0.00 43.15 3.24
4101 5984 2.349297 CGTAAGTTCGAGAGCCAACT 57.651 50.000 0.00 0.00 34.16 3.16
4104 5987 3.673594 CGTAAGTTCGAGAGCCAACTGAT 60.674 47.826 0.00 0.00 33.01 2.90
4105 5988 3.409026 AAGTTCGAGAGCCAACTGATT 57.591 42.857 0.00 0.00 33.01 2.57
4106 5989 4.537135 AAGTTCGAGAGCCAACTGATTA 57.463 40.909 0.00 0.00 33.01 1.75
4107 5990 4.744795 AGTTCGAGAGCCAACTGATTAT 57.255 40.909 0.00 0.00 31.42 1.28
4108 5991 5.091261 AGTTCGAGAGCCAACTGATTATT 57.909 39.130 0.00 0.00 31.42 1.40
4109 5992 5.112686 AGTTCGAGAGCCAACTGATTATTC 58.887 41.667 0.00 0.00 31.42 1.75
4110 5993 4.736126 TCGAGAGCCAACTGATTATTCA 57.264 40.909 0.00 0.00 0.00 2.57
4111 5994 4.433615 TCGAGAGCCAACTGATTATTCAC 58.566 43.478 0.00 0.00 0.00 3.18
4112 5995 4.081697 TCGAGAGCCAACTGATTATTCACA 60.082 41.667 0.00 0.00 0.00 3.58
4113 5996 4.631377 CGAGAGCCAACTGATTATTCACAA 59.369 41.667 0.00 0.00 0.00 3.33
4114 5997 5.446473 CGAGAGCCAACTGATTATTCACAAC 60.446 44.000 0.00 0.00 0.00 3.32
4115 5998 4.393062 AGAGCCAACTGATTATTCACAACG 59.607 41.667 0.00 0.00 0.00 4.10
4116 5999 4.072131 AGCCAACTGATTATTCACAACGT 58.928 39.130 0.00 0.00 0.00 3.99
4117 6000 4.518970 AGCCAACTGATTATTCACAACGTT 59.481 37.500 0.00 0.00 0.00 3.99
4118 6001 4.851558 GCCAACTGATTATTCACAACGTTC 59.148 41.667 0.00 0.00 0.00 3.95
4119 6002 5.390613 CCAACTGATTATTCACAACGTTCC 58.609 41.667 0.00 0.00 0.00 3.62
4120 6003 4.921470 ACTGATTATTCACAACGTTCCG 57.079 40.909 0.00 0.00 0.00 4.30
4121 6004 3.682858 ACTGATTATTCACAACGTTCCGG 59.317 43.478 0.00 0.00 0.00 5.14
4122 6005 2.417239 TGATTATTCACAACGTTCCGGC 59.583 45.455 0.00 0.00 0.00 6.13
4123 6006 1.880271 TTATTCACAACGTTCCGGCA 58.120 45.000 0.00 0.00 0.00 5.69
4124 6007 1.434555 TATTCACAACGTTCCGGCAG 58.565 50.000 0.00 0.00 0.00 4.85
4125 6008 0.250124 ATTCACAACGTTCCGGCAGA 60.250 50.000 0.00 0.00 0.00 4.26
4126 6009 0.878523 TTCACAACGTTCCGGCAGAG 60.879 55.000 0.00 0.00 0.00 3.35
4127 6010 1.594293 CACAACGTTCCGGCAGAGT 60.594 57.895 0.00 0.00 0.00 3.24
4128 6011 1.300697 ACAACGTTCCGGCAGAGTC 60.301 57.895 0.00 0.00 0.00 3.36
4129 6012 2.049433 AACGTTCCGGCAGAGTCG 60.049 61.111 0.00 0.00 0.00 4.18
4135 6018 2.579201 CCGGCAGAGTCGGTCATT 59.421 61.111 1.21 0.00 46.58 2.57
4136 6019 1.811266 CCGGCAGAGTCGGTCATTG 60.811 63.158 1.21 0.00 46.58 2.82
4137 6020 1.811266 CGGCAGAGTCGGTCATTGG 60.811 63.158 0.00 0.00 0.00 3.16
4138 6021 2.109126 GGCAGAGTCGGTCATTGGC 61.109 63.158 0.00 0.00 0.00 4.52
4139 6022 2.456119 GCAGAGTCGGTCATTGGCG 61.456 63.158 0.00 0.00 0.00 5.69
4140 6023 1.811266 CAGAGTCGGTCATTGGCGG 60.811 63.158 0.00 0.00 0.00 6.13
4141 6024 3.195698 GAGTCGGTCATTGGCGGC 61.196 66.667 0.00 0.00 0.00 6.53
4142 6025 3.665675 GAGTCGGTCATTGGCGGCT 62.666 63.158 11.43 0.00 0.00 5.52
4143 6026 3.499737 GTCGGTCATTGGCGGCTG 61.500 66.667 11.43 0.25 0.00 4.85
4146 6029 3.064324 GGTCATTGGCGGCTGCTT 61.064 61.111 18.85 0.00 42.25 3.91
4147 6030 2.486966 GTCATTGGCGGCTGCTTC 59.513 61.111 18.85 1.54 42.25 3.86
4148 6031 2.042831 GTCATTGGCGGCTGCTTCT 61.043 57.895 18.85 0.00 42.25 2.85
4149 6032 1.746615 TCATTGGCGGCTGCTTCTC 60.747 57.895 18.85 0.28 42.25 2.87
4150 6033 1.748122 CATTGGCGGCTGCTTCTCT 60.748 57.895 18.85 0.00 42.25 3.10
4151 6034 1.748122 ATTGGCGGCTGCTTCTCTG 60.748 57.895 18.85 0.00 42.25 3.35
4152 6035 3.907260 TTGGCGGCTGCTTCTCTGG 62.907 63.158 18.85 0.00 42.25 3.86
4153 6036 4.087892 GGCGGCTGCTTCTCTGGA 62.088 66.667 18.85 0.00 42.25 3.86
4154 6037 2.188994 GCGGCTGCTTCTCTGGAT 59.811 61.111 11.21 0.00 38.39 3.41
4155 6038 2.178890 GCGGCTGCTTCTCTGGATG 61.179 63.158 11.21 0.00 38.39 3.51
4156 6039 1.523258 CGGCTGCTTCTCTGGATGG 60.523 63.158 0.00 0.00 0.00 3.51
4157 6040 1.823041 GGCTGCTTCTCTGGATGGC 60.823 63.158 0.00 0.00 0.00 4.40
4158 6041 1.077930 GCTGCTTCTCTGGATGGCA 60.078 57.895 0.00 0.00 32.72 4.92
4159 6042 1.096386 GCTGCTTCTCTGGATGGCAG 61.096 60.000 8.61 8.61 44.00 4.85
4160 6043 0.464013 CTGCTTCTCTGGATGGCAGG 60.464 60.000 0.00 0.00 40.95 4.85
4161 6044 1.823041 GCTTCTCTGGATGGCAGGC 60.823 63.158 0.00 0.00 0.00 4.85
4162 6045 1.913722 CTTCTCTGGATGGCAGGCT 59.086 57.895 0.00 0.00 0.00 4.58
4163 6046 0.179051 CTTCTCTGGATGGCAGGCTC 60.179 60.000 0.00 0.00 0.00 4.70
4164 6047 1.630126 TTCTCTGGATGGCAGGCTCC 61.630 60.000 0.00 0.00 0.00 4.70
4165 6048 3.092511 TCTGGATGGCAGGCTCCC 61.093 66.667 3.27 0.00 0.00 4.30
4166 6049 3.414193 CTGGATGGCAGGCTCCCA 61.414 66.667 0.00 0.00 36.66 4.37
4167 6050 3.711059 CTGGATGGCAGGCTCCCAC 62.711 68.421 0.00 0.00 34.68 4.61
4168 6051 4.864334 GGATGGCAGGCTCCCACG 62.864 72.222 0.00 0.00 34.68 4.94
4169 6052 4.101448 GATGGCAGGCTCCCACGT 62.101 66.667 0.00 0.00 34.68 4.49
4170 6053 4.101448 ATGGCAGGCTCCCACGTC 62.101 66.667 0.00 0.00 34.68 4.34
4523 6412 2.506957 AAAAAGGCCTTGGGGTGCG 61.507 57.895 21.33 0.00 34.45 5.34
4541 6430 2.665185 AAGACCGCTGACCGTTGC 60.665 61.111 0.00 0.00 34.38 4.17
4556 6486 2.159707 CCGTTGCGGTAACTCTCAAATG 60.160 50.000 7.36 0.00 42.73 2.32
4563 6493 4.433805 GCGGTAACTCTCAAATGTTGTACG 60.434 45.833 0.00 0.00 0.00 3.67
4573 6503 2.472695 ATGTTGTACGTGCTGGACAT 57.527 45.000 4.97 9.62 0.00 3.06
4593 6523 8.685427 TGGACATGATGTTTACAGGATAAAATG 58.315 33.333 0.00 0.00 0.00 2.32
4623 6553 6.266558 CCTCTGGAAGATACTGTACAGCTAAT 59.733 42.308 22.90 13.51 45.62 1.73
4627 6557 8.210954 CTGGAAGATACTGTACAGCTAATGAGC 61.211 44.444 22.90 0.00 43.44 4.26
4650 6580 6.377146 AGCTAAATGGATGTTTTGGTTCGTAT 59.623 34.615 0.00 0.00 0.00 3.06
4651 6581 7.554835 AGCTAAATGGATGTTTTGGTTCGTATA 59.445 33.333 0.00 0.00 0.00 1.47
4659 6589 6.879276 TGTTTTGGTTCGTATACAATTGGA 57.121 33.333 10.83 0.10 0.00 3.53
4697 6627 2.213499 AGAAAGTTCAGTCGTGCTTGG 58.787 47.619 0.00 0.00 0.00 3.61
4822 6801 1.374947 CCCCAGAAAAGAGCGACCA 59.625 57.895 0.00 0.00 0.00 4.02
4847 6826 2.713967 GCCATCCAACGGCTGCATT 61.714 57.895 0.50 0.00 46.56 3.56
4848 6827 1.892338 CCATCCAACGGCTGCATTT 59.108 52.632 0.50 0.00 0.00 2.32
4849 6828 1.102154 CCATCCAACGGCTGCATTTA 58.898 50.000 0.50 0.00 0.00 1.40
4850 6829 1.682854 CCATCCAACGGCTGCATTTAT 59.317 47.619 0.50 0.00 0.00 1.40
4852 6831 2.418368 TCCAACGGCTGCATTTATCT 57.582 45.000 0.50 0.00 0.00 1.98
4853 6832 2.016318 TCCAACGGCTGCATTTATCTG 58.984 47.619 0.50 0.00 0.00 2.90
4854 6833 1.745087 CCAACGGCTGCATTTATCTGT 59.255 47.619 0.50 0.00 0.00 3.41
4855 6834 2.223340 CCAACGGCTGCATTTATCTGTC 60.223 50.000 0.50 0.00 0.00 3.51
4856 6835 2.679837 CAACGGCTGCATTTATCTGTCT 59.320 45.455 0.50 0.00 0.00 3.41
4857 6836 2.555199 ACGGCTGCATTTATCTGTCTC 58.445 47.619 0.50 0.00 0.00 3.36
4858 6837 2.093500 ACGGCTGCATTTATCTGTCTCA 60.093 45.455 0.50 0.00 0.00 3.27
4871 6853 7.848223 TTATCTGTCTCACACACCATAATTG 57.152 36.000 0.00 0.00 0.00 2.32
4934 6916 1.399440 CCAGATCCATGAACTTGCACG 59.601 52.381 0.00 0.00 0.00 5.34
4967 6949 7.769272 TGATTTACTCCAAAAGTTGCAAAAG 57.231 32.000 0.00 0.00 39.55 2.27
4968 6950 7.327214 TGATTTACTCCAAAAGTTGCAAAAGT 58.673 30.769 0.00 0.00 39.55 2.66
4969 6951 6.959671 TTTACTCCAAAAGTTGCAAAAGTG 57.040 33.333 0.00 0.00 39.55 3.16
4979 6961 2.687935 GTTGCAAAAGTGAACTGAGGGA 59.312 45.455 0.00 0.00 0.00 4.20
4984 6966 0.905357 AAGTGAACTGAGGGATCCCG 59.095 55.000 25.48 13.79 41.95 5.14
4992 6974 0.035439 TGAGGGATCCCGAAACTTGC 60.035 55.000 25.48 8.72 41.95 4.01
4997 6979 0.322546 GATCCCGAAACTTGCACCCT 60.323 55.000 0.00 0.00 0.00 4.34
5012 6994 6.266558 ACTTGCACCCTTTATGTGATGTTTTA 59.733 34.615 0.00 0.00 35.74 1.52
5018 7000 7.122650 CACCCTTTATGTGATGTTTTAGTCCAT 59.877 37.037 0.00 0.00 35.74 3.41
5023 7005 4.523083 TGTGATGTTTTAGTCCATAGCCC 58.477 43.478 0.00 0.00 0.00 5.19
5028 7010 4.780815 TGTTTTAGTCCATAGCCCATCAG 58.219 43.478 0.00 0.00 0.00 2.90
5045 7027 0.601046 CAGAGCTCGACAAGTGGCAA 60.601 55.000 8.37 0.00 0.00 4.52
5046 7028 0.601311 AGAGCTCGACAAGTGGCAAC 60.601 55.000 8.37 0.00 0.00 4.17
5048 7030 0.882042 AGCTCGACAAGTGGCAACTG 60.882 55.000 0.00 0.00 36.51 3.16
5055 7037 1.155042 CAAGTGGCAACTGAGAGCTC 58.845 55.000 5.27 5.27 36.51 4.09
5058 7040 2.125350 GGCAACTGAGAGCTCGGG 60.125 66.667 8.37 5.12 40.22 5.14
5059 7041 2.125350 GCAACTGAGAGCTCGGGG 60.125 66.667 8.37 4.75 40.22 5.73
5113 7095 3.502211 CCTGCTGTTCCGTTGAATTAACT 59.498 43.478 0.00 0.00 37.13 2.24
5138 7120 5.459107 CGCACTACTTCACACCTGAATATAC 59.541 44.000 0.00 0.00 35.78 1.47
5139 7121 6.338146 GCACTACTTCACACCTGAATATACA 58.662 40.000 0.00 0.00 35.78 2.29
5143 7125 8.035394 ACTACTTCACACCTGAATATACAACAG 58.965 37.037 0.00 0.00 35.78 3.16
5157 7139 1.598130 AACAGCTCCTGCCGTTGTC 60.598 57.895 0.00 0.00 38.27 3.18
5165 7147 3.818121 CTGCCGTTGTCCCCGTTCA 62.818 63.158 0.00 0.00 0.00 3.18
5218 7223 0.267356 CCTCCTCCATCCTCTCCCTT 59.733 60.000 0.00 0.00 0.00 3.95
5234 7263 2.670592 TTCCTCTGTCGACGCCGA 60.671 61.111 11.62 6.46 43.35 5.54
5320 7364 4.191544 CCATGGTTTCTTAGAGCGATTCA 58.808 43.478 2.57 0.00 0.00 2.57
5322 7366 3.262420 TGGTTTCTTAGAGCGATTCAGC 58.738 45.455 0.00 0.00 37.41 4.26
5332 7376 1.153765 CGATTCAGCCAGCTCGTCA 60.154 57.895 0.00 0.00 0.00 4.35
5344 7388 1.142778 GCTCGTCAGACGCTGATTCC 61.143 60.000 18.62 0.00 42.73 3.01
5378 7437 7.182761 CGAAGTGCAGGTTAGATCTTTATTTG 58.817 38.462 0.00 0.00 0.00 2.32
5385 7444 7.467403 GCAGGTTAGATCTTTATTTGTGGTAGC 60.467 40.741 0.00 0.00 0.00 3.58
5400 7461 3.008704 GTGGTAGCTAGGGTTTCTTTGGA 59.991 47.826 0.00 0.00 0.00 3.53
5406 7467 2.683211 AGGGTTTCTTTGGATGTGCT 57.317 45.000 0.00 0.00 0.00 4.40
5435 7496 6.976925 GCAGTTAGCAAATGAAGCTGATTTAT 59.023 34.615 4.14 0.73 43.33 1.40
5437 7498 8.804743 CAGTTAGCAAATGAAGCTGATTTATTG 58.195 33.333 4.14 0.00 43.33 1.90
5483 7544 2.751436 GCTTGGAATGGAGCGGCA 60.751 61.111 1.45 0.00 0.00 5.69
5526 7587 2.181954 TGTGAGCATGCATGTGTGTA 57.818 45.000 26.79 9.42 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.763465 CGTTGGATTCGTATTTAAACATAGTTT 57.237 29.630 0.51 0.51 0.00 2.66
19 20 9.153721 TCGTTGGATTCGTATTTAAACATAGTT 57.846 29.630 0.00 0.00 0.00 2.24
21 22 9.027129 TCTCGTTGGATTCGTATTTAAACATAG 57.973 33.333 0.00 0.00 0.00 2.23
22 23 8.929827 TCTCGTTGGATTCGTATTTAAACATA 57.070 30.769 0.00 0.00 0.00 2.29
23 24 7.837202 TCTCGTTGGATTCGTATTTAAACAT 57.163 32.000 0.00 0.00 0.00 2.71
24 25 7.837202 ATCTCGTTGGATTCGTATTTAAACA 57.163 32.000 0.00 0.00 0.00 2.83
30 31 9.931210 GAAAAATTATCTCGTTGGATTCGTATT 57.069 29.630 0.00 0.00 0.00 1.89
31 32 9.326413 AGAAAAATTATCTCGTTGGATTCGTAT 57.674 29.630 0.00 0.00 0.00 3.06
32 33 8.712285 AGAAAAATTATCTCGTTGGATTCGTA 57.288 30.769 0.00 0.00 0.00 3.43
33 34 7.611213 AGAAAAATTATCTCGTTGGATTCGT 57.389 32.000 0.00 0.00 0.00 3.85
34 35 8.175069 TCAAGAAAAATTATCTCGTTGGATTCG 58.825 33.333 0.00 0.00 0.00 3.34
35 36 9.278734 GTCAAGAAAAATTATCTCGTTGGATTC 57.721 33.333 0.00 0.00 0.00 2.52
36 37 8.792633 TGTCAAGAAAAATTATCTCGTTGGATT 58.207 29.630 0.00 0.00 0.00 3.01
37 38 8.335532 TGTCAAGAAAAATTATCTCGTTGGAT 57.664 30.769 0.00 0.00 0.00 3.41
38 39 7.737972 TGTCAAGAAAAATTATCTCGTTGGA 57.262 32.000 0.00 0.00 0.00 3.53
39 40 7.008628 GCATGTCAAGAAAAATTATCTCGTTGG 59.991 37.037 0.00 0.00 0.00 3.77
40 41 7.538334 TGCATGTCAAGAAAAATTATCTCGTTG 59.462 33.333 0.00 0.00 0.00 4.10
41 42 7.592938 TGCATGTCAAGAAAAATTATCTCGTT 58.407 30.769 0.00 0.00 0.00 3.85
43 44 8.624701 AATGCATGTCAAGAAAAATTATCTCG 57.375 30.769 0.00 0.00 0.00 4.04
51 52 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
52 53 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
53 54 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
54 55 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
55 56 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
57 58 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
102 103 6.274322 AGGTCCCATTTATAGTTTATGCCA 57.726 37.500 0.00 0.00 0.00 4.92
103 104 9.969001 TTATAGGTCCCATTTATAGTTTATGCC 57.031 33.333 0.00 0.00 0.00 4.40
111 112 9.151471 CGTCATGTTTATAGGTCCCATTTATAG 57.849 37.037 0.00 0.00 0.00 1.31
113 114 6.940298 CCGTCATGTTTATAGGTCCCATTTAT 59.060 38.462 0.00 0.00 0.00 1.40
114 115 6.099990 TCCGTCATGTTTATAGGTCCCATTTA 59.900 38.462 0.00 0.00 0.00 1.40
115 116 5.104277 TCCGTCATGTTTATAGGTCCCATTT 60.104 40.000 0.00 0.00 0.00 2.32
116 117 4.410883 TCCGTCATGTTTATAGGTCCCATT 59.589 41.667 0.00 0.00 0.00 3.16
117 118 3.971305 TCCGTCATGTTTATAGGTCCCAT 59.029 43.478 0.00 0.00 0.00 4.00
118 119 3.376636 TCCGTCATGTTTATAGGTCCCA 58.623 45.455 0.00 0.00 0.00 4.37
119 120 3.244112 CCTCCGTCATGTTTATAGGTCCC 60.244 52.174 0.00 0.00 0.00 4.46
121 122 4.667519 ACCTCCGTCATGTTTATAGGTC 57.332 45.455 0.00 0.00 30.03 3.85
124 125 6.569994 GCCTACTACCTCCGTCATGTTTATAG 60.570 46.154 0.00 0.00 0.00 1.31
126 127 4.038883 GCCTACTACCTCCGTCATGTTTAT 59.961 45.833 0.00 0.00 0.00 1.40
128 129 2.167900 GCCTACTACCTCCGTCATGTTT 59.832 50.000 0.00 0.00 0.00 2.83
129 130 1.755380 GCCTACTACCTCCGTCATGTT 59.245 52.381 0.00 0.00 0.00 2.71
132 133 0.182061 TCGCCTACTACCTCCGTCAT 59.818 55.000 0.00 0.00 0.00 3.06
133 134 0.745845 GTCGCCTACTACCTCCGTCA 60.746 60.000 0.00 0.00 0.00 4.35
135 136 0.106819 ATGTCGCCTACTACCTCCGT 60.107 55.000 0.00 0.00 0.00 4.69
136 137 0.311165 CATGTCGCCTACTACCTCCG 59.689 60.000 0.00 0.00 0.00 4.63
137 138 0.032267 GCATGTCGCCTACTACCTCC 59.968 60.000 0.00 0.00 32.94 4.30
139 140 1.414158 ATGCATGTCGCCTACTACCT 58.586 50.000 0.00 0.00 41.33 3.08
140 141 2.296471 ACTATGCATGTCGCCTACTACC 59.704 50.000 10.16 0.00 41.33 3.18
141 142 3.004419 TGACTATGCATGTCGCCTACTAC 59.996 47.826 10.16 0.00 41.33 2.73
145 146 3.535280 TTTGACTATGCATGTCGCCTA 57.465 42.857 10.16 0.00 41.33 3.93
244 1960 2.354003 GGACATGCATGGTTGGGAAAAG 60.354 50.000 29.41 1.09 0.00 2.27
492 2248 3.733337 CACTTTGTCTACTGAGCCTGTT 58.267 45.455 0.00 0.00 0.00 3.16
536 2292 4.963428 CGGAGGAATACCGCGGCC 62.963 72.222 28.58 18.94 43.74 6.13
581 2337 2.190313 CAGCATTCGCCAGGCCTA 59.810 61.111 3.98 0.00 39.83 3.93
608 2369 4.037446 AGCTCGTTGTTAATTTGGCAAAGA 59.963 37.500 18.61 6.05 0.00 2.52
660 2432 2.159787 CGGTGCGTCTTGATGAAGAAAG 60.160 50.000 0.00 0.00 40.00 2.62
691 2463 1.021390 CCTCCTCCGTGTGCATGAAC 61.021 60.000 0.00 0.00 0.00 3.18
692 2464 1.296392 CCTCCTCCGTGTGCATGAA 59.704 57.895 0.00 0.00 0.00 2.57
693 2465 2.659063 CCCTCCTCCGTGTGCATGA 61.659 63.158 0.00 0.00 0.00 3.07
694 2466 2.124983 CCCTCCTCCGTGTGCATG 60.125 66.667 0.00 0.00 0.00 4.06
695 2467 2.284625 TCCCTCCTCCGTGTGCAT 60.285 61.111 0.00 0.00 0.00 3.96
696 2468 2.997315 CTCCCTCCTCCGTGTGCA 60.997 66.667 0.00 0.00 0.00 4.57
697 2469 3.775654 CCTCCCTCCTCCGTGTGC 61.776 72.222 0.00 0.00 0.00 4.57
699 2471 2.037527 GTCCTCCCTCCTCCGTGT 59.962 66.667 0.00 0.00 0.00 4.49
701 2473 2.637640 ATGGTCCTCCCTCCTCCGT 61.638 63.158 0.00 0.00 0.00 4.69
702 2474 2.136878 CATGGTCCTCCCTCCTCCG 61.137 68.421 0.00 0.00 0.00 4.63
703 2475 2.447714 GCATGGTCCTCCCTCCTCC 61.448 68.421 0.00 0.00 0.00 4.30
704 2476 2.801631 CGCATGGTCCTCCCTCCTC 61.802 68.421 0.00 0.00 0.00 3.71
705 2477 2.765807 CGCATGGTCCTCCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
706 2478 4.554036 GCGCATGGTCCTCCCTCC 62.554 72.222 0.30 0.00 0.00 4.30
707 2479 4.899239 CGCGCATGGTCCTCCCTC 62.899 72.222 8.75 0.00 0.00 4.30
710 2482 3.807631 TATGCGCGCATGGTCCTCC 62.808 63.158 46.79 11.44 37.82 4.30
711 2483 1.887242 TTATGCGCGCATGGTCCTC 60.887 57.895 46.79 12.22 37.82 3.71
712 2484 2.180204 GTTATGCGCGCATGGTCCT 61.180 57.895 46.79 29.23 37.82 3.85
713 2485 0.878523 TAGTTATGCGCGCATGGTCC 60.879 55.000 46.79 32.01 37.82 4.46
714 2486 0.232303 GTAGTTATGCGCGCATGGTC 59.768 55.000 46.79 35.00 37.82 4.02
715 2487 1.157870 GGTAGTTATGCGCGCATGGT 61.158 55.000 46.79 33.84 37.82 3.55
716 2488 1.157257 TGGTAGTTATGCGCGCATGG 61.157 55.000 46.79 3.64 37.82 3.66
717 2489 0.867746 ATGGTAGTTATGCGCGCATG 59.132 50.000 46.79 4.08 37.82 4.06
718 2490 1.531149 GAATGGTAGTTATGCGCGCAT 59.469 47.619 43.68 43.68 40.19 4.73
759 2531 2.124403 GAGGTAGACGGAGCGGGA 60.124 66.667 0.00 0.00 0.00 5.14
772 2548 4.144727 AGGCGGATCGGAGGAGGT 62.145 66.667 4.16 0.00 0.00 3.85
812 2588 1.546476 GCTCCGTATATACTGCAGGCT 59.454 52.381 19.93 7.11 0.00 4.58
813 2589 1.272490 TGCTCCGTATATACTGCAGGC 59.728 52.381 19.93 7.98 0.00 4.85
814 2590 3.223423 CTGCTCCGTATATACTGCAGG 57.777 52.381 26.84 16.23 42.64 4.85
910 2686 0.619255 TGGGGACGAAGAGGGCAATA 60.619 55.000 0.00 0.00 0.00 1.90
930 2706 8.008513 AGAAACAACCGATATCTTAGCTTCTA 57.991 34.615 0.00 0.00 0.00 2.10
946 2722 3.481453 AGCAGGAGAAAGAGAAACAACC 58.519 45.455 0.00 0.00 0.00 3.77
957 2733 2.393271 GCTGAAGCTAGCAGGAGAAA 57.607 50.000 18.83 0.00 43.17 2.52
965 2741 1.741706 TGAAGCATTGCTGAAGCTAGC 59.258 47.619 12.82 6.62 39.62 3.42
966 2742 2.355132 CCTGAAGCATTGCTGAAGCTAG 59.645 50.000 12.82 4.80 39.62 3.42
967 2743 2.362736 CCTGAAGCATTGCTGAAGCTA 58.637 47.619 12.82 0.00 39.62 3.32
968 2744 1.174783 CCTGAAGCATTGCTGAAGCT 58.825 50.000 12.82 0.00 39.62 3.74
971 2747 1.352017 TCTCCCTGAAGCATTGCTGAA 59.648 47.619 12.82 2.59 39.62 3.02
972 2748 0.986527 TCTCCCTGAAGCATTGCTGA 59.013 50.000 12.82 3.70 39.62 4.26
973 2749 1.948145 GATCTCCCTGAAGCATTGCTG 59.052 52.381 12.82 0.00 39.62 4.41
974 2750 1.474677 CGATCTCCCTGAAGCATTGCT 60.475 52.381 5.03 5.03 42.56 3.91
975 2751 0.942962 CGATCTCCCTGAAGCATTGC 59.057 55.000 0.00 0.00 0.00 3.56
976 2752 2.609427 TCGATCTCCCTGAAGCATTG 57.391 50.000 0.00 0.00 0.00 2.82
977 2753 4.101585 TGTTATCGATCTCCCTGAAGCATT 59.898 41.667 0.00 0.00 0.00 3.56
978 2754 3.643320 TGTTATCGATCTCCCTGAAGCAT 59.357 43.478 0.00 0.00 0.00 3.79
979 2755 3.031013 TGTTATCGATCTCCCTGAAGCA 58.969 45.455 0.00 0.00 0.00 3.91
980 2756 3.735237 TGTTATCGATCTCCCTGAAGC 57.265 47.619 0.00 0.00 0.00 3.86
1077 2857 2.230992 CTGCGAGAGAGGAATGGATAGG 59.769 54.545 0.00 0.00 0.00 2.57
1154 2947 4.771356 GCCTGCACGCACAGCATG 62.771 66.667 2.56 0.00 41.82 4.06
1324 3117 0.543749 ATGGCCTTCTTCTTCCTCCG 59.456 55.000 3.32 0.00 0.00 4.63
1328 3121 1.379642 CGCCATGGCCTTCTTCTTCC 61.380 60.000 30.79 0.00 37.98 3.46
1345 3138 1.078285 TTCCGTTTACCCCCATCGC 60.078 57.895 0.00 0.00 0.00 4.58
1352 3145 2.677325 GCTCCTCTTCTTCCGTTTACCC 60.677 54.545 0.00 0.00 0.00 3.69
1359 3152 0.898320 TTCCTGCTCCTCTTCTTCCG 59.102 55.000 0.00 0.00 0.00 4.30
1430 3223 0.755686 CTGTGCTTAGGCTAGGGGAG 59.244 60.000 5.75 0.00 39.59 4.30
1482 3275 0.867746 TGCAATGCACTGACGAGAAC 59.132 50.000 2.72 0.00 31.71 3.01
1517 3310 2.822707 AGAAATTCTCATGCCCTGCT 57.177 45.000 0.00 0.00 0.00 4.24
1561 3354 2.129555 ATCAGCCACCTGTTCCGCTT 62.130 55.000 0.00 0.00 40.09 4.68
1562 3355 2.596851 ATCAGCCACCTGTTCCGCT 61.597 57.895 0.00 0.00 40.09 5.52
1618 3439 6.262049 GGGAAACAAAAGTTTAACATGCCATT 59.738 34.615 0.00 0.00 0.00 3.16
1622 3443 5.236263 CCAGGGAAACAAAAGTTTAACATGC 59.764 40.000 0.00 0.00 0.00 4.06
1681 3502 7.067615 TGCTTTGTTGGAGTTCACTTTGTATTA 59.932 33.333 0.00 0.00 0.00 0.98
1684 3505 4.702612 TGCTTTGTTGGAGTTCACTTTGTA 59.297 37.500 0.00 0.00 0.00 2.41
1690 3511 2.099756 AGCTTGCTTTGTTGGAGTTCAC 59.900 45.455 0.00 0.00 0.00 3.18
1708 3529 9.852091 CTGCTTATAGAATTTTTGAAAAGAGCT 57.148 29.630 0.00 0.00 0.00 4.09
1712 3533 9.612620 ACGACTGCTTATAGAATTTTTGAAAAG 57.387 29.630 0.00 0.00 0.00 2.27
1716 3537 7.899178 TCACGACTGCTTATAGAATTTTTGA 57.101 32.000 0.00 0.00 0.00 2.69
1717 3538 9.638300 GTATCACGACTGCTTATAGAATTTTTG 57.362 33.333 0.00 0.00 0.00 2.44
1718 3539 8.827677 GGTATCACGACTGCTTATAGAATTTTT 58.172 33.333 0.00 0.00 0.00 1.94
1719 3540 7.441458 GGGTATCACGACTGCTTATAGAATTTT 59.559 37.037 0.00 0.00 0.00 1.82
1720 3541 6.929606 GGGTATCACGACTGCTTATAGAATTT 59.070 38.462 0.00 0.00 0.00 1.82
1745 3566 5.409214 CCACCAAAAATAATTTCAGCACCAG 59.591 40.000 0.00 0.00 0.00 4.00
1746 3567 5.303971 CCACCAAAAATAATTTCAGCACCA 58.696 37.500 0.00 0.00 0.00 4.17
1747 3568 4.154015 GCCACCAAAAATAATTTCAGCACC 59.846 41.667 0.00 0.00 0.00 5.01
1899 3754 2.360801 TGCATGCTTGATGATGGTGATG 59.639 45.455 20.33 0.00 33.31 3.07
1982 3837 6.406370 ACCCCAAGTAATTAAAGGTACGTAC 58.594 40.000 17.56 17.56 0.00 3.67
1983 3838 6.619329 ACCCCAAGTAATTAAAGGTACGTA 57.381 37.500 0.00 0.00 0.00 3.57
1984 3839 5.503634 ACCCCAAGTAATTAAAGGTACGT 57.496 39.130 0.00 0.00 0.00 3.57
1985 3840 6.175471 AGAACCCCAAGTAATTAAAGGTACG 58.825 40.000 0.00 0.00 0.00 3.67
1986 3841 8.324306 ACTAGAACCCCAAGTAATTAAAGGTAC 58.676 37.037 0.00 0.00 0.00 3.34
1987 3842 8.453498 ACTAGAACCCCAAGTAATTAAAGGTA 57.547 34.615 0.00 0.00 0.00 3.08
1988 3843 7.339177 ACTAGAACCCCAAGTAATTAAAGGT 57.661 36.000 0.00 0.00 0.00 3.50
1989 3844 9.916360 ATTACTAGAACCCCAAGTAATTAAAGG 57.084 33.333 0.00 0.00 41.41 3.11
2001 3856 6.214615 TGTGAGATCAAATTACTAGAACCCCA 59.785 38.462 0.00 0.00 0.00 4.96
2034 3889 6.481976 TCGCCTGATCGAACACATTAATTAAT 59.518 34.615 4.81 4.81 35.31 1.40
2035 3890 5.813157 TCGCCTGATCGAACACATTAATTAA 59.187 36.000 0.00 0.00 35.31 1.40
2036 3891 5.233476 GTCGCCTGATCGAACACATTAATTA 59.767 40.000 0.00 0.00 40.43 1.40
2037 3892 4.034048 GTCGCCTGATCGAACACATTAATT 59.966 41.667 0.00 0.00 40.43 1.40
2238 4093 0.246086 CTCTCAGCTTGGCGTTCTCT 59.754 55.000 0.00 0.00 0.00 3.10
2253 4108 1.522580 GGCATGAACCTCGGCTCTC 60.523 63.158 0.00 0.00 0.00 3.20
2323 4178 2.096069 CACTTCCACAGCATCAGTTTCG 60.096 50.000 0.00 0.00 0.00 3.46
2442 4300 2.045926 GTTGCCGCTCATCTGGGT 60.046 61.111 0.00 0.00 0.00 4.51
2687 4545 1.593209 GGTTTCACGTGACGCCTCA 60.593 57.895 19.90 0.00 0.00 3.86
2796 4661 4.464244 AGACACTGTCAGCATACTGTACAT 59.536 41.667 11.80 0.00 44.77 2.29
2800 4665 3.056962 CAGAGACACTGTCAGCATACTGT 60.057 47.826 11.80 0.00 40.10 3.55
2857 4722 4.458397 GATGCCTTTGAGATCATGGAAGA 58.542 43.478 0.00 0.00 0.00 2.87
2871 4736 0.670546 CGTCCAGTGTCGATGCCTTT 60.671 55.000 0.00 0.00 0.00 3.11
2961 4826 2.496070 CCATCAGAACCAGACGGAACTA 59.504 50.000 0.00 0.00 35.59 2.24
2966 4831 1.482182 TGATCCATCAGAACCAGACGG 59.518 52.381 0.00 0.00 33.30 4.79
3210 5076 0.737367 CCTGCTCTTCGACGATGCAA 60.737 55.000 17.09 6.25 33.07 4.08
3217 5083 1.493311 CGTTTGCCTGCTCTTCGAC 59.507 57.895 0.00 0.00 0.00 4.20
3303 5172 1.630244 GCGCAGTCTGGCTAACACAG 61.630 60.000 0.30 0.00 37.30 3.66
3309 5178 4.435436 CACGGCGCAGTCTGGCTA 62.435 66.667 11.16 0.00 0.00 3.93
3312 5181 1.447838 ATTACACGGCGCAGTCTGG 60.448 57.895 11.16 2.16 0.00 3.86
3316 5185 0.391130 ATCACATTACACGGCGCAGT 60.391 50.000 10.83 9.16 0.00 4.40
3333 5202 2.821969 AGACAACAACCAGCAATCCATC 59.178 45.455 0.00 0.00 0.00 3.51
3335 5204 2.229792 GAGACAACAACCAGCAATCCA 58.770 47.619 0.00 0.00 0.00 3.41
3336 5205 1.541588 GGAGACAACAACCAGCAATCC 59.458 52.381 0.00 0.00 0.00 3.01
3338 5207 2.233271 CAGGAGACAACAACCAGCAAT 58.767 47.619 0.00 0.00 0.00 3.56
3339 5208 1.064758 ACAGGAGACAACAACCAGCAA 60.065 47.619 0.00 0.00 0.00 3.91
3340 5209 0.546122 ACAGGAGACAACAACCAGCA 59.454 50.000 0.00 0.00 0.00 4.41
3341 5210 0.947244 CACAGGAGACAACAACCAGC 59.053 55.000 0.00 0.00 0.00 4.85
3342 5211 0.947244 GCACAGGAGACAACAACCAG 59.053 55.000 0.00 0.00 0.00 4.00
3343 5212 0.254462 TGCACAGGAGACAACAACCA 59.746 50.000 0.00 0.00 0.00 3.67
3344 5213 1.609208 ATGCACAGGAGACAACAACC 58.391 50.000 0.00 0.00 0.00 3.77
3345 5214 4.455533 TCAATATGCACAGGAGACAACAAC 59.544 41.667 0.00 0.00 0.00 3.32
3357 5231 4.492494 AGTCACCTGATCAATATGCACA 57.508 40.909 0.00 0.00 0.00 4.57
3358 5232 4.036027 CCAAGTCACCTGATCAATATGCAC 59.964 45.833 0.00 0.00 0.00 4.57
3363 5237 3.054434 CCACCCAAGTCACCTGATCAATA 60.054 47.826 0.00 0.00 0.00 1.90
3598 5472 5.822519 GCATGGTACTAAATTGAGATGACCA 59.177 40.000 14.48 14.48 39.88 4.02
3607 5481 6.500684 ACACAAGAGCATGGTACTAAATTG 57.499 37.500 0.00 0.00 0.00 2.32
3885 5761 1.736032 CGTGATTCGTCCCTCAGGAAC 60.736 57.143 0.00 0.00 46.38 3.62
3922 5798 3.361977 GGAAATGTGCACGCGGGT 61.362 61.111 11.45 0.00 0.00 5.28
3923 5799 4.459331 CGGAAATGTGCACGCGGG 62.459 66.667 12.47 7.92 0.00 6.13
3925 5801 2.074353 CAACGGAAATGTGCACGCG 61.074 57.895 13.13 3.53 0.00 6.01
3928 5804 1.130955 CTTGCAACGGAAATGTGCAC 58.869 50.000 10.75 10.75 35.07 4.57
3929 5805 1.001487 CTCTTGCAACGGAAATGTGCA 60.001 47.619 0.00 0.00 0.00 4.57
3930 5806 1.689959 CTCTTGCAACGGAAATGTGC 58.310 50.000 0.00 0.00 0.00 4.57
3932 5808 1.609208 AGCTCTTGCAACGGAAATGT 58.391 45.000 0.00 0.00 42.74 2.71
3933 5809 4.811024 TCTATAGCTCTTGCAACGGAAATG 59.189 41.667 0.00 0.00 42.74 2.32
3934 5810 5.023533 TCTATAGCTCTTGCAACGGAAAT 57.976 39.130 0.00 0.00 42.74 2.17
3939 5820 4.424626 TCACTTCTATAGCTCTTGCAACG 58.575 43.478 0.00 0.00 42.74 4.10
3947 5828 6.367422 GGTTATGCACATCACTTCTATAGCTC 59.633 42.308 0.00 0.00 0.00 4.09
3948 5829 6.226787 GGTTATGCACATCACTTCTATAGCT 58.773 40.000 0.00 0.00 0.00 3.32
3952 5833 5.050490 GTCGGTTATGCACATCACTTCTAT 58.950 41.667 0.00 0.00 0.00 1.98
3958 5839 1.396996 GTGGTCGGTTATGCACATCAC 59.603 52.381 0.00 0.00 0.00 3.06
3959 5840 1.677518 GGTGGTCGGTTATGCACATCA 60.678 52.381 0.00 0.00 0.00 3.07
3984 5867 1.537202 GACATCCCACTGCAACAGTTC 59.463 52.381 0.00 0.00 42.59 3.01
4025 5908 0.678950 TCAGGTTCATGCGACACTGA 59.321 50.000 12.03 12.03 33.05 3.41
4028 5911 0.666274 TCGTCAGGTTCATGCGACAC 60.666 55.000 0.00 0.00 0.00 3.67
4035 5918 1.279271 CTTCCCCTTCGTCAGGTTCAT 59.721 52.381 3.21 0.00 42.02 2.57
4046 5929 0.035439 TGCAACGATCCTTCCCCTTC 60.035 55.000 0.00 0.00 0.00 3.46
4091 5974 5.446473 CGTTGTGAATAATCAGTTGGCTCTC 60.446 44.000 0.00 0.00 35.88 3.20
4119 6002 1.811266 CCAATGACCGACTCTGCCG 60.811 63.158 0.00 0.00 0.00 5.69
4120 6003 2.109126 GCCAATGACCGACTCTGCC 61.109 63.158 0.00 0.00 0.00 4.85
4121 6004 2.456119 CGCCAATGACCGACTCTGC 61.456 63.158 0.00 0.00 0.00 4.26
4122 6005 1.811266 CCGCCAATGACCGACTCTG 60.811 63.158 0.00 0.00 0.00 3.35
4123 6006 2.579201 CCGCCAATGACCGACTCT 59.421 61.111 0.00 0.00 0.00 3.24
4124 6007 3.195698 GCCGCCAATGACCGACTC 61.196 66.667 0.00 0.00 0.00 3.36
4125 6008 3.706373 AGCCGCCAATGACCGACT 61.706 61.111 0.00 0.00 0.00 4.18
4126 6009 3.499737 CAGCCGCCAATGACCGAC 61.500 66.667 0.00 0.00 0.00 4.79
4129 6012 3.056313 GAAGCAGCCGCCAATGACC 62.056 63.158 0.00 0.00 39.83 4.02
4130 6013 1.986575 GAGAAGCAGCCGCCAATGAC 61.987 60.000 0.00 0.00 39.83 3.06
4131 6014 1.746615 GAGAAGCAGCCGCCAATGA 60.747 57.895 0.00 0.00 39.83 2.57
4132 6015 1.748122 AGAGAAGCAGCCGCCAATG 60.748 57.895 0.00 0.00 39.83 2.82
4133 6016 1.748122 CAGAGAAGCAGCCGCCAAT 60.748 57.895 0.00 0.00 39.83 3.16
4134 6017 2.359107 CAGAGAAGCAGCCGCCAA 60.359 61.111 0.00 0.00 39.83 4.52
4135 6018 4.399395 CCAGAGAAGCAGCCGCCA 62.399 66.667 0.00 0.00 39.83 5.69
4136 6019 3.397613 ATCCAGAGAAGCAGCCGCC 62.398 63.158 0.00 0.00 39.83 6.13
4137 6020 2.178890 CATCCAGAGAAGCAGCCGC 61.179 63.158 0.00 0.00 38.99 6.53
4138 6021 1.523258 CCATCCAGAGAAGCAGCCG 60.523 63.158 0.00 0.00 0.00 5.52
4139 6022 1.823041 GCCATCCAGAGAAGCAGCC 60.823 63.158 0.00 0.00 0.00 4.85
4140 6023 1.077930 TGCCATCCAGAGAAGCAGC 60.078 57.895 0.00 0.00 32.19 5.25
4141 6024 0.464013 CCTGCCATCCAGAGAAGCAG 60.464 60.000 3.37 3.37 45.94 4.24
4142 6025 1.605992 CCTGCCATCCAGAGAAGCA 59.394 57.895 0.00 0.00 44.64 3.91
4143 6026 1.823041 GCCTGCCATCCAGAGAAGC 60.823 63.158 0.00 0.00 44.64 3.86
4144 6027 0.179051 GAGCCTGCCATCCAGAGAAG 60.179 60.000 0.00 0.00 44.64 2.85
4145 6028 1.630126 GGAGCCTGCCATCCAGAGAA 61.630 60.000 0.00 0.00 44.64 2.87
4146 6029 2.068821 GGAGCCTGCCATCCAGAGA 61.069 63.158 0.00 0.00 44.64 3.10
4147 6030 2.509916 GGAGCCTGCCATCCAGAG 59.490 66.667 0.00 0.00 44.64 3.35
4148 6031 3.092511 GGGAGCCTGCCATCCAGA 61.093 66.667 0.00 0.00 44.64 3.86
4149 6032 3.414193 TGGGAGCCTGCCATCCAG 61.414 66.667 0.00 0.00 41.41 3.86
4150 6033 3.731728 GTGGGAGCCTGCCATCCA 61.732 66.667 8.66 0.00 40.94 3.41
4151 6034 4.864334 CGTGGGAGCCTGCCATCC 62.864 72.222 8.66 0.00 40.94 3.51
4152 6035 4.101448 ACGTGGGAGCCTGCCATC 62.101 66.667 8.66 1.41 40.94 3.51
4153 6036 4.101448 GACGTGGGAGCCTGCCAT 62.101 66.667 8.66 0.00 40.94 4.40
4173 6056 4.907034 CGATCCACTCGCCGTCGG 62.907 72.222 6.99 6.99 41.14 4.79
4523 6412 2.668280 GCAACGGTCAGCGGTCTTC 61.668 63.158 0.00 0.00 0.00 2.87
4541 6430 4.682860 ACGTACAACATTTGAGAGTTACCG 59.317 41.667 0.00 0.00 0.00 4.02
4542 6431 5.614013 GCACGTACAACATTTGAGAGTTACC 60.614 44.000 0.00 0.00 0.00 2.85
4544 6433 5.176774 CAGCACGTACAACATTTGAGAGTTA 59.823 40.000 0.00 0.00 0.00 2.24
4548 6437 2.805671 CCAGCACGTACAACATTTGAGA 59.194 45.455 0.00 0.00 0.00 3.27
4551 6440 2.289274 TGTCCAGCACGTACAACATTTG 59.711 45.455 0.00 0.00 0.00 2.32
4556 6486 1.790755 TCATGTCCAGCACGTACAAC 58.209 50.000 0.00 0.00 0.00 3.32
4563 6493 3.127548 CCTGTAAACATCATGTCCAGCAC 59.872 47.826 0.00 0.00 0.00 4.40
4573 6503 8.514330 GGTACCATTTTATCCTGTAAACATCA 57.486 34.615 7.15 0.00 0.00 3.07
4623 6553 5.335583 CGAACCAAAACATCCATTTAGCTCA 60.336 40.000 0.00 0.00 0.00 4.26
4627 6557 8.670135 TGTATACGAACCAAAACATCCATTTAG 58.330 33.333 0.00 0.00 0.00 1.85
4677 6607 2.213499 CCAAGCACGACTGAACTTTCT 58.787 47.619 0.00 0.00 0.00 2.52
4697 6627 4.236527 ACCAACAACCAAGATCTATCCC 57.763 45.455 0.00 0.00 0.00 3.85
4844 6823 7.848223 TTATGGTGTGTGAGACAGATAAATG 57.152 36.000 0.00 0.00 34.28 2.32
4845 6824 8.896744 CAATTATGGTGTGTGAGACAGATAAAT 58.103 33.333 0.00 0.00 34.28 1.40
4847 6826 6.823182 CCAATTATGGTGTGTGAGACAGATAA 59.177 38.462 0.00 0.00 42.18 1.75
4848 6827 6.348498 CCAATTATGGTGTGTGAGACAGATA 58.652 40.000 0.00 0.00 42.18 1.98
4849 6828 5.188434 CCAATTATGGTGTGTGAGACAGAT 58.812 41.667 0.00 0.00 42.18 2.90
4850 6829 4.578871 CCAATTATGGTGTGTGAGACAGA 58.421 43.478 0.00 0.00 42.18 3.41
4871 6853 3.688159 CTGGCCCAGCTTGCAACC 61.688 66.667 0.00 0.00 0.00 3.77
4934 6916 8.273780 ACTTTTGGAGTAAATCATCACATCTC 57.726 34.615 0.00 0.00 36.65 2.75
4950 6932 5.062558 CAGTTCACTTTTGCAACTTTTGGAG 59.937 40.000 0.00 0.00 30.85 3.86
4967 6949 0.902531 TTCGGGATCCCTCAGTTCAC 59.097 55.000 28.42 0.00 0.00 3.18
4968 6950 1.278127 GTTTCGGGATCCCTCAGTTCA 59.722 52.381 28.42 2.52 0.00 3.18
4969 6951 1.555533 AGTTTCGGGATCCCTCAGTTC 59.444 52.381 28.42 13.17 0.00 3.01
4979 6961 0.112412 AAGGGTGCAAGTTTCGGGAT 59.888 50.000 0.00 0.00 0.00 3.85
4984 6966 4.846779 TCACATAAAGGGTGCAAGTTTC 57.153 40.909 0.00 0.00 36.22 2.78
4992 6974 6.432783 TGGACTAAAACATCACATAAAGGGTG 59.567 38.462 0.00 0.00 37.60 4.61
4997 6979 7.284489 GGGCTATGGACTAAAACATCACATAAA 59.716 37.037 0.00 0.00 0.00 1.40
5012 6994 1.055040 GCTCTGATGGGCTATGGACT 58.945 55.000 0.00 0.00 0.00 3.85
5018 7000 0.395724 TGTCGAGCTCTGATGGGCTA 60.396 55.000 12.85 0.00 39.05 3.93
5023 7005 1.638133 CCACTTGTCGAGCTCTGATG 58.362 55.000 12.85 6.12 0.00 3.07
5028 7010 0.601311 AGTTGCCACTTGTCGAGCTC 60.601 55.000 2.73 2.73 0.00 4.09
5072 7054 0.179097 GGGGCTTTGTGCAAAAACGA 60.179 50.000 0.00 0.00 45.15 3.85
5074 7056 0.180171 AGGGGGCTTTGTGCAAAAAC 59.820 50.000 0.00 0.00 45.15 2.43
5113 7095 1.324383 TCAGGTGTGAAGTAGTGCGA 58.676 50.000 0.00 0.00 0.00 5.10
5157 7139 4.483243 CGGGATGGGTGAACGGGG 62.483 72.222 0.00 0.00 0.00 5.73
5165 7147 1.855451 AAAGGGGAACGGGATGGGT 60.855 57.895 0.00 0.00 0.00 4.51
5234 7263 2.659610 GGAGCTTGCTCAGACGGT 59.340 61.111 21.97 0.00 0.00 4.83
5320 7364 4.427661 GCGTCTGACGAGCTGGCT 62.428 66.667 32.07 0.00 46.05 4.75
5344 7388 1.073216 CCTGCACTTCGCTACTGACG 61.073 60.000 0.00 0.00 43.06 4.35
5350 7394 3.024547 AGATCTAACCTGCACTTCGCTA 58.975 45.455 0.00 0.00 43.06 4.26
5378 7437 3.008704 TCCAAAGAAACCCTAGCTACCAC 59.991 47.826 0.00 0.00 0.00 4.16
5385 7444 3.690460 AGCACATCCAAAGAAACCCTAG 58.310 45.455 0.00 0.00 0.00 3.02
5411 7472 8.804743 CAATAAATCAGCTTCATTTGCTAACTG 58.195 33.333 9.73 0.00 38.92 3.16
5435 7496 3.316868 GTGCCAGGTAGCTAAAACAACAA 59.683 43.478 0.00 0.00 0.00 2.83
5437 7498 2.228103 GGTGCCAGGTAGCTAAAACAAC 59.772 50.000 0.00 0.00 0.00 3.32
5483 7544 5.150715 TCTAGAACTCAGATATGTGGCCAT 58.849 41.667 9.72 0.00 34.97 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.