Multiple sequence alignment - TraesCS3B01G330200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G330200 chr3B 100.000 4235 0 0 1 4235 534189493 534193727 0.000000e+00 7821.0
1 TraesCS3B01G330200 chr3B 91.718 326 25 2 910 1234 95456164 95456488 6.460000e-123 451.0
2 TraesCS3B01G330200 chr3B 96.522 115 4 0 3882 3996 620206765 620206879 1.550000e-44 191.0
3 TraesCS3B01G330200 chr3B 100.000 36 0 0 11 46 534189538 534189573 2.730000e-07 67.6
4 TraesCS3B01G330200 chr3D 94.915 3127 86 21 548 3649 408314612 408317690 0.000000e+00 4826.0
5 TraesCS3B01G330200 chr3D 97.154 246 7 0 3990 4235 408317732 408317977 2.360000e-112 416.0
6 TraesCS3B01G330200 chr3D 79.265 381 34 13 134 484 408314143 408314508 1.530000e-54 224.0
7 TraesCS3B01G330200 chr3A 92.371 3408 166 36 534 3896 543180996 543177638 0.000000e+00 4767.0
8 TraesCS3B01G330200 chr3A 88.439 346 20 5 192 517 543181392 543181047 2.370000e-107 399.0
9 TraesCS3B01G330200 chr3A 90.722 194 13 2 4016 4204 543177634 543177441 1.950000e-63 254.0
10 TraesCS3B01G330200 chr3A 94.118 119 5 2 3879 3996 648697471 648697588 3.360000e-41 180.0
11 TraesCS3B01G330200 chr3A 97.753 89 2 0 46 134 512035667 512035755 2.040000e-33 154.0
12 TraesCS3B01G330200 chr3A 100.000 46 0 0 1 46 512035657 512035702 7.540000e-13 86.1
13 TraesCS3B01G330200 chr7B 99.048 105 1 0 3892 3996 667178923 667178819 5.590000e-44 189.0
14 TraesCS3B01G330200 chr6B 99.048 105 1 0 3892 3996 240045613 240045509 5.590000e-44 189.0
15 TraesCS3B01G330200 chr6B 96.460 113 2 2 3885 3996 25588944 25589055 7.230000e-43 185.0
16 TraesCS3B01G330200 chr6B 96.429 112 4 0 3885 3996 62703766 62703877 7.230000e-43 185.0
17 TraesCS3B01G330200 chr6B 95.699 93 4 0 46 138 125640225 125640133 2.640000e-32 150.0
18 TraesCS3B01G330200 chr6B 95.652 46 2 0 1 46 125640235 125640190 1.630000e-09 75.0
19 TraesCS3B01G330200 chr6A 95.690 116 3 1 3881 3996 139333853 139333740 7.230000e-43 185.0
20 TraesCS3B01G330200 chr4A 95.690 116 3 2 3881 3996 450333078 450332965 7.230000e-43 185.0
21 TraesCS3B01G330200 chr1B 95.652 115 4 1 3882 3996 70235871 70235758 2.600000e-42 183.0
22 TraesCS3B01G330200 chr2A 97.826 92 2 0 46 137 233457370 233457461 4.380000e-35 159.0
23 TraesCS3B01G330200 chr2A 100.000 46 0 0 1 46 233457360 233457405 7.540000e-13 86.1
24 TraesCS3B01G330200 chr7A 97.753 89 2 0 46 134 365105127 365105039 2.040000e-33 154.0
25 TraesCS3B01G330200 chr7A 97.826 46 1 0 1 46 365105137 365105092 3.510000e-11 80.5
26 TraesCS3B01G330200 chr5B 96.629 89 3 0 46 134 385190296 385190384 9.490000e-32 148.0
27 TraesCS3B01G330200 chr4B 96.629 89 3 0 46 134 22896553 22896465 9.490000e-32 148.0
28 TraesCS3B01G330200 chr4B 94.382 89 5 0 46 134 493646343 493646255 2.050000e-28 137.0
29 TraesCS3B01G330200 chr4B 92.135 89 7 0 46 134 126595958 126595870 4.450000e-25 126.0
30 TraesCS3B01G330200 chr4B 100.000 46 0 0 1 46 493646353 493646308 7.540000e-13 86.1
31 TraesCS3B01G330200 chr2B 95.506 89 4 0 48 136 440825929 440826017 4.410000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G330200 chr3B 534189493 534193727 4234 False 7821.000000 7821 100.000000 1 4235 1 chr3B.!!$F2 4234
1 TraesCS3B01G330200 chr3D 408314143 408317977 3834 False 1822.000000 4826 90.444667 134 4235 3 chr3D.!!$F1 4101
2 TraesCS3B01G330200 chr3A 543177441 543181392 3951 True 1806.666667 4767 90.510667 192 4204 3 chr3A.!!$R1 4012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.033405 TAGCTCCTCTACCGTGCCTT 60.033 55.0 0.0 0.0 0.0 4.35 F
359 393 0.038166 GACCAAACCCTGCTCCATCA 59.962 55.0 0.0 0.0 0.0 3.07 F
360 394 0.038744 ACCAAACCCTGCTCCATCAG 59.961 55.0 0.0 0.0 0.0 2.90 F
1982 2152 0.032813 ATGATGAAGGGTGGCAAGGG 60.033 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1928 0.910088 GGTAAGGGAGCTGGACAGGT 60.910 60.000 3.35 3.35 42.58 4.00 R
1875 2045 1.737793 GATGCAAAACCTCGGGTACTG 59.262 52.381 0.00 0.00 33.12 2.74 R
1995 2165 1.777272 GATACCAATCCCCTGCCTCTT 59.223 52.381 0.00 0.00 0.00 2.85 R
3969 4332 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.010145 TTCATGAGTTCCTGTAGCGC 57.990 50.000 0.00 0.00 0.00 5.92
20 21 0.179137 TCATGAGTTCCTGTAGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
21 22 1.519455 ATGAGTTCCTGTAGCGCGC 60.519 57.895 26.66 26.66 0.00 6.86
22 23 2.126071 GAGTTCCTGTAGCGCGCA 60.126 61.111 35.10 16.82 0.00 6.09
23 24 2.125912 AGTTCCTGTAGCGCGCAG 60.126 61.111 35.10 21.82 0.00 5.18
24 25 2.432628 GTTCCTGTAGCGCGCAGT 60.433 61.111 35.10 16.87 32.41 4.40
25 26 2.432456 TTCCTGTAGCGCGCAGTG 60.432 61.111 35.10 19.09 43.41 3.66
26 27 3.932580 TTCCTGTAGCGCGCAGTGG 62.933 63.158 35.10 26.68 39.19 4.00
27 28 4.435436 CCTGTAGCGCGCAGTGGA 62.435 66.667 35.10 9.85 39.19 4.02
28 29 2.432456 CTGTAGCGCGCAGTGGAA 60.432 61.111 35.10 11.20 39.19 3.53
29 30 2.027073 CTGTAGCGCGCAGTGGAAA 61.027 57.895 35.10 10.07 39.19 3.13
30 31 1.565156 CTGTAGCGCGCAGTGGAAAA 61.565 55.000 35.10 8.40 39.19 2.29
31 32 0.953471 TGTAGCGCGCAGTGGAAAAT 60.953 50.000 35.10 11.76 39.19 1.82
32 33 0.247695 GTAGCGCGCAGTGGAAAATC 60.248 55.000 35.10 6.54 39.19 2.17
33 34 0.672091 TAGCGCGCAGTGGAAAATCA 60.672 50.000 35.10 0.00 39.19 2.57
34 35 1.797537 GCGCGCAGTGGAAAATCAC 60.798 57.895 29.10 0.00 39.19 3.06
35 36 1.573932 CGCGCAGTGGAAAATCACA 59.426 52.632 8.75 0.00 39.93 3.58
36 37 0.453282 CGCGCAGTGGAAAATCACAG 60.453 55.000 8.75 0.00 39.93 3.66
37 38 0.874390 GCGCAGTGGAAAATCACAGA 59.126 50.000 0.30 0.00 39.93 3.41
38 39 1.135859 GCGCAGTGGAAAATCACAGAG 60.136 52.381 0.30 0.00 39.93 3.35
39 40 1.466167 CGCAGTGGAAAATCACAGAGG 59.534 52.381 0.00 0.00 39.93 3.69
40 41 1.200948 GCAGTGGAAAATCACAGAGGC 59.799 52.381 0.00 0.00 39.93 4.70
41 42 2.507484 CAGTGGAAAATCACAGAGGCA 58.493 47.619 0.00 0.00 39.93 4.75
42 43 2.227388 CAGTGGAAAATCACAGAGGCAC 59.773 50.000 0.00 0.00 39.93 5.01
43 44 2.107204 AGTGGAAAATCACAGAGGCACT 59.893 45.455 0.00 0.00 40.32 4.40
62 63 4.435436 CCTGTAGCGCGCAGTGGA 62.435 66.667 35.10 9.85 39.19 4.02
63 64 2.432456 CTGTAGCGCGCAGTGGAA 60.432 61.111 35.10 11.20 39.19 3.53
64 65 2.027073 CTGTAGCGCGCAGTGGAAA 61.027 57.895 35.10 10.07 39.19 3.13
65 66 1.565156 CTGTAGCGCGCAGTGGAAAA 61.565 55.000 35.10 8.40 39.19 2.29
66 67 0.953471 TGTAGCGCGCAGTGGAAAAT 60.953 50.000 35.10 11.76 39.19 1.82
67 68 0.247695 GTAGCGCGCAGTGGAAAATC 60.248 55.000 35.10 6.54 39.19 2.17
68 69 0.672091 TAGCGCGCAGTGGAAAATCA 60.672 50.000 35.10 0.00 39.19 2.57
69 70 1.797537 GCGCGCAGTGGAAAATCAC 60.798 57.895 29.10 0.00 39.19 3.06
70 71 1.573932 CGCGCAGTGGAAAATCACA 59.426 52.632 8.75 0.00 39.93 3.58
71 72 0.453282 CGCGCAGTGGAAAATCACAG 60.453 55.000 8.75 0.00 39.93 3.66
72 73 0.874390 GCGCAGTGGAAAATCACAGA 59.126 50.000 0.30 0.00 39.93 3.41
73 74 1.135859 GCGCAGTGGAAAATCACAGAG 60.136 52.381 0.30 0.00 39.93 3.35
74 75 1.466167 CGCAGTGGAAAATCACAGAGG 59.534 52.381 0.00 0.00 39.93 3.69
75 76 1.200948 GCAGTGGAAAATCACAGAGGC 59.799 52.381 0.00 0.00 39.93 4.70
76 77 2.507484 CAGTGGAAAATCACAGAGGCA 58.493 47.619 0.00 0.00 39.93 4.75
77 78 2.227388 CAGTGGAAAATCACAGAGGCAC 59.773 50.000 0.00 0.00 39.93 5.01
78 79 2.107204 AGTGGAAAATCACAGAGGCACT 59.893 45.455 0.00 0.00 40.32 4.40
86 87 2.984623 CAGAGGCACTGCAGGCTA 59.015 61.111 19.93 0.00 45.32 3.93
87 88 1.449246 CAGAGGCACTGCAGGCTAC 60.449 63.158 19.93 14.86 45.32 3.58
88 89 1.611851 AGAGGCACTGCAGGCTACT 60.612 57.895 19.93 16.55 45.32 2.57
89 90 0.324738 AGAGGCACTGCAGGCTACTA 60.325 55.000 19.93 0.00 45.32 1.82
90 91 0.755686 GAGGCACTGCAGGCTACTAT 59.244 55.000 19.93 4.33 45.32 2.12
91 92 1.964223 GAGGCACTGCAGGCTACTATA 59.036 52.381 19.93 0.00 45.32 1.31
92 93 1.967066 AGGCACTGCAGGCTACTATAG 59.033 52.381 19.93 0.00 43.28 1.31
93 94 3.925569 AGGCACTGCAGGCTACTATAGC 61.926 54.545 19.93 7.17 45.27 2.97
106 107 2.506444 ACTATAGCTCCTCTACCGTGC 58.494 52.381 0.00 0.00 0.00 5.34
107 108 1.813786 CTATAGCTCCTCTACCGTGCC 59.186 57.143 0.00 0.00 0.00 5.01
108 109 0.186386 ATAGCTCCTCTACCGTGCCT 59.814 55.000 0.00 0.00 0.00 4.75
109 110 0.033405 TAGCTCCTCTACCGTGCCTT 60.033 55.000 0.00 0.00 0.00 4.35
110 111 1.142097 GCTCCTCTACCGTGCCTTC 59.858 63.158 0.00 0.00 0.00 3.46
111 112 1.605058 GCTCCTCTACCGTGCCTTCA 61.605 60.000 0.00 0.00 0.00 3.02
112 113 0.457851 CTCCTCTACCGTGCCTTCAG 59.542 60.000 0.00 0.00 0.00 3.02
113 114 1.153549 CCTCTACCGTGCCTTCAGC 60.154 63.158 0.00 0.00 44.14 4.26
122 123 4.187056 GCCTTCAGCACGGTAGAC 57.813 61.111 0.00 0.00 42.97 2.59
138 139 3.934391 GACGAGCCGGTTCCCACAG 62.934 68.421 13.19 0.46 0.00 3.66
169 170 5.784177 CCATGGATGCGTACTATAGAGTTT 58.216 41.667 5.56 0.00 37.10 2.66
185 186 4.464008 AGAGTTTTTCAGACTCCAATGCA 58.536 39.130 0.00 0.00 43.55 3.96
196 204 4.223700 AGACTCCAATGCACACTTATCTCA 59.776 41.667 0.00 0.00 0.00 3.27
212 220 6.645415 ACTTATCTCATAATTTTACGAGCCCG 59.355 38.462 0.00 0.00 42.50 6.13
280 310 6.116680 TCGAAGAAGAACGTAGGATAGAAC 57.883 41.667 0.00 0.00 0.00 3.01
310 340 7.667043 ATTCGCAGTGAAAAAGTAGAATGTA 57.333 32.000 0.00 0.00 40.71 2.29
311 341 6.706055 TCGCAGTGAAAAAGTAGAATGTAG 57.294 37.500 0.00 0.00 0.00 2.74
344 378 2.121291 TGCAAATTATCAGGCGACCA 57.879 45.000 0.00 0.00 0.00 4.02
359 393 0.038166 GACCAAACCCTGCTCCATCA 59.962 55.000 0.00 0.00 0.00 3.07
360 394 0.038744 ACCAAACCCTGCTCCATCAG 59.961 55.000 0.00 0.00 0.00 2.90
361 395 0.329261 CCAAACCCTGCTCCATCAGA 59.671 55.000 0.00 0.00 36.19 3.27
362 396 1.064166 CCAAACCCTGCTCCATCAGAT 60.064 52.381 0.00 0.00 36.19 2.90
363 397 2.295885 CAAACCCTGCTCCATCAGATC 58.704 52.381 0.00 0.00 36.19 2.75
364 398 1.588239 AACCCTGCTCCATCAGATCA 58.412 50.000 0.00 0.00 36.19 2.92
365 399 1.817087 ACCCTGCTCCATCAGATCAT 58.183 50.000 0.00 0.00 36.19 2.45
366 400 1.698532 ACCCTGCTCCATCAGATCATC 59.301 52.381 0.00 0.00 36.19 2.92
384 428 8.733458 CAGATCATCAGATTAAACAAACCAAGA 58.267 33.333 0.00 0.00 33.72 3.02
475 534 1.176527 GCCTGCTTCATAACTTGGCA 58.823 50.000 0.00 0.00 38.79 4.92
501 580 2.365068 CGCTCACGTCTGAACACCG 61.365 63.158 0.00 0.00 33.53 4.94
509 588 0.946221 GTCTGAACACCGAGCACAGG 60.946 60.000 0.00 0.00 0.00 4.00
517 596 0.832135 ACCGAGCACAGGAGGAGAAA 60.832 55.000 0.00 0.00 0.00 2.52
518 597 0.390472 CCGAGCACAGGAGGAGAAAC 60.390 60.000 0.00 0.00 0.00 2.78
519 598 0.318441 CGAGCACAGGAGGAGAAACA 59.682 55.000 0.00 0.00 0.00 2.83
520 599 1.671261 CGAGCACAGGAGGAGAAACAG 60.671 57.143 0.00 0.00 0.00 3.16
523 602 1.544314 GCACAGGAGGAGAAACAGCTT 60.544 52.381 0.00 0.00 0.00 3.74
525 604 2.050144 ACAGGAGGAGAAACAGCTTCA 58.950 47.619 0.00 0.00 36.40 3.02
526 605 2.224402 ACAGGAGGAGAAACAGCTTCAC 60.224 50.000 0.00 0.00 36.40 3.18
528 607 1.433534 GAGGAGAAACAGCTTCACCG 58.566 55.000 0.00 0.00 46.37 4.94
530 609 1.001406 AGGAGAAACAGCTTCACCGAG 59.999 52.381 0.00 0.00 46.37 4.63
531 610 1.270358 GGAGAAACAGCTTCACCGAGT 60.270 52.381 0.00 0.00 35.42 4.18
536 651 0.528470 ACAGCTTCACCGAGTAGAGC 59.472 55.000 0.00 0.00 0.00 4.09
546 661 1.669604 CGAGTAGAGCAGAGTAGCCA 58.330 55.000 0.00 0.00 34.23 4.75
610 731 0.716108 ATCGCGCAGACTTTTTCTCG 59.284 50.000 8.75 0.00 28.96 4.04
612 733 1.507919 GCGCAGACTTTTTCTCGCG 60.508 57.895 0.30 0.00 46.19 5.87
622 743 2.444700 TTTTCTCGCGAGTCCCCACC 62.445 60.000 33.33 0.00 0.00 4.61
657 778 3.454587 TTTGACGCGAGCACCCACT 62.455 57.895 15.93 0.00 0.00 4.00
658 779 3.858868 TTGACGCGAGCACCCACTC 62.859 63.158 15.93 0.00 0.00 3.51
695 824 4.222589 CCGCACGCGCACCATTAG 62.223 66.667 5.73 0.00 38.40 1.73
699 828 1.709760 CACGCGCACCATTAGACTG 59.290 57.895 5.73 0.00 0.00 3.51
703 832 0.108138 GCGCACCATTAGACTGGAGT 60.108 55.000 0.30 0.00 39.73 3.85
806 935 4.168291 GGGCCTGCCTCTTCCTCG 62.168 72.222 8.29 0.00 36.10 4.63
807 936 4.847444 GGCCTGCCTCTTCCTCGC 62.847 72.222 0.00 0.00 0.00 5.03
813 942 4.214327 CCTCTTCCTCGCCCTCGC 62.214 72.222 0.00 0.00 35.26 5.03
838 967 2.417936 GGTGGCGCTAGTAGGAGC 59.582 66.667 7.64 0.00 39.20 4.70
841 970 1.379977 TGGCGCTAGTAGGAGCAGT 60.380 57.895 7.64 0.00 42.99 4.40
842 971 0.106868 TGGCGCTAGTAGGAGCAGTA 60.107 55.000 7.64 0.00 42.99 2.74
843 972 0.594110 GGCGCTAGTAGGAGCAGTAG 59.406 60.000 7.64 0.00 42.99 2.57
844 973 0.039888 GCGCTAGTAGGAGCAGTAGC 60.040 60.000 0.00 0.77 42.99 3.58
845 974 1.309950 CGCTAGTAGGAGCAGTAGCA 58.690 55.000 9.83 0.00 44.40 3.49
846 975 1.265635 CGCTAGTAGGAGCAGTAGCAG 59.734 57.143 9.83 1.01 44.40 4.24
889 1018 1.610673 AGTCTCCCATCGCCACACT 60.611 57.895 0.00 0.00 0.00 3.55
1250 1396 4.770874 CGCCACCCCTTACCACGG 62.771 72.222 0.00 0.00 0.00 4.94
1288 1440 3.947841 GCGCACTGCCAAACGTCA 61.948 61.111 0.30 0.00 37.76 4.35
1289 1441 2.945984 CGCACTGCCAAACGTCAT 59.054 55.556 0.00 0.00 0.00 3.06
1297 1452 3.496131 CAAACGTCATCCCCGCCG 61.496 66.667 0.00 0.00 0.00 6.46
1401 1559 4.664677 GACGTGCTGTCCGTGGCT 62.665 66.667 0.00 0.00 42.04 4.75
1506 1667 1.571460 CTTCACCGTGAACTGCAGC 59.429 57.895 15.27 0.00 32.21 5.25
1605 1775 1.688735 CTCATGATGGACCGCTTCCTA 59.311 52.381 0.00 0.00 46.10 2.94
1725 1895 2.751436 GCTGCGGCCAATTGGAGA 60.751 61.111 29.02 6.82 37.39 3.71
1758 1928 0.817654 ATGATCGCGTCAGGAGAACA 59.182 50.000 5.77 0.00 40.92 3.18
1845 2015 3.176411 TGAGCATGAAGAAGAGGAGGAA 58.824 45.455 0.00 0.00 0.00 3.36
1857 2027 3.914771 AGAGGAGGAAGAAGAGGATGAG 58.085 50.000 0.00 0.00 0.00 2.90
1875 2045 2.161012 TGAGGATGACTTCGACGTACAC 59.839 50.000 0.00 0.00 0.00 2.90
1926 2096 0.244721 GTTTGCTCCCTGGATTGTGC 59.755 55.000 0.00 0.00 0.00 4.57
1982 2152 0.032813 ATGATGAAGGGTGGCAAGGG 60.033 55.000 0.00 0.00 0.00 3.95
2012 2182 1.575447 GGAAGAGGCAGGGGATTGGT 61.575 60.000 0.00 0.00 0.00 3.67
2152 2322 6.054941 TCAGAGTTATGTTGCTTCTTGACAA 58.945 36.000 0.00 0.00 0.00 3.18
2524 2694 3.708403 TGCTTGGATCAGATCACAGTT 57.292 42.857 12.66 0.00 0.00 3.16
2525 2695 3.603532 TGCTTGGATCAGATCACAGTTC 58.396 45.455 12.66 0.00 0.00 3.01
2558 2728 3.238438 CTCCATGAGCTCAGGGGG 58.762 66.667 38.99 35.49 46.93 5.40
3243 3413 9.645128 CTGGATACTGAGATATGATATCTTCCT 57.355 37.037 21.70 10.02 37.83 3.36
3408 3578 3.443329 AGCATGTTGGTAAATTCGATGCA 59.557 39.130 0.00 0.00 37.72 3.96
3422 3592 1.074319 GATGCACATGCCTGTTTGCG 61.074 55.000 0.49 0.00 41.18 4.85
3649 4012 6.392354 AGACATTTCCTGTGCAATGTAAATG 58.608 36.000 17.54 17.54 42.46 2.32
3650 4013 5.481105 ACATTTCCTGTGCAATGTAAATGG 58.519 37.500 20.72 9.89 40.98 3.16
3651 4014 3.591196 TTCCTGTGCAATGTAAATGGC 57.409 42.857 0.00 0.00 0.00 4.40
3652 4015 2.523245 TCCTGTGCAATGTAAATGGCA 58.477 42.857 0.00 0.00 0.00 4.92
3653 4016 3.098377 TCCTGTGCAATGTAAATGGCAT 58.902 40.909 0.00 0.00 38.68 4.40
3654 4017 3.130869 TCCTGTGCAATGTAAATGGCATC 59.869 43.478 0.00 0.00 38.68 3.91
3655 4018 3.131577 CCTGTGCAATGTAAATGGCATCT 59.868 43.478 0.00 0.00 38.68 2.90
3656 4019 4.357142 CTGTGCAATGTAAATGGCATCTC 58.643 43.478 0.00 0.00 38.68 2.75
3657 4020 4.018490 TGTGCAATGTAAATGGCATCTCT 58.982 39.130 0.00 0.00 38.68 3.10
3658 4021 4.096833 TGTGCAATGTAAATGGCATCTCTC 59.903 41.667 0.00 0.00 38.68 3.20
3659 4022 4.337555 GTGCAATGTAAATGGCATCTCTCT 59.662 41.667 0.00 0.00 38.68 3.10
3660 4023 4.337274 TGCAATGTAAATGGCATCTCTCTG 59.663 41.667 0.00 0.00 0.00 3.35
3661 4024 4.261489 GCAATGTAAATGGCATCTCTCTGG 60.261 45.833 0.00 0.00 0.00 3.86
3662 4025 4.785346 ATGTAAATGGCATCTCTCTGGT 57.215 40.909 0.00 0.00 0.00 4.00
3663 4026 3.877559 TGTAAATGGCATCTCTCTGGTG 58.122 45.455 0.00 0.00 0.00 4.17
3664 4027 3.519107 TGTAAATGGCATCTCTCTGGTGA 59.481 43.478 0.00 0.00 0.00 4.02
3665 4028 3.947612 AAATGGCATCTCTCTGGTGAT 57.052 42.857 0.00 0.00 0.00 3.06
3666 4029 2.932855 ATGGCATCTCTCTGGTGATG 57.067 50.000 0.00 0.00 42.77 3.07
3671 4034 3.195471 CATCTCTCTGGTGATGCATGT 57.805 47.619 2.46 0.00 36.89 3.21
3672 4035 2.975732 TCTCTCTGGTGATGCATGTC 57.024 50.000 2.46 0.00 0.00 3.06
3673 4036 2.464782 TCTCTCTGGTGATGCATGTCT 58.535 47.619 2.46 0.00 0.00 3.41
3674 4037 2.836372 TCTCTCTGGTGATGCATGTCTT 59.164 45.455 2.46 0.00 0.00 3.01
3675 4038 2.937149 CTCTCTGGTGATGCATGTCTTG 59.063 50.000 2.46 0.00 0.00 3.02
3690 4053 6.992063 CATGTCTTGCTAGTTTCCAGTAAT 57.008 37.500 0.00 0.00 0.00 1.89
3692 4055 7.910304 CATGTCTTGCTAGTTTCCAGTAATAC 58.090 38.462 0.00 0.00 0.00 1.89
3693 4056 7.241042 TGTCTTGCTAGTTTCCAGTAATACT 57.759 36.000 0.00 0.00 0.00 2.12
3694 4057 7.097192 TGTCTTGCTAGTTTCCAGTAATACTG 58.903 38.462 13.20 13.20 45.53 2.74
3708 4071 6.223852 CAGTAATACTGGCATTACCTACTGG 58.776 44.000 12.38 8.25 42.35 4.00
3709 4072 6.041637 CAGTAATACTGGCATTACCTACTGGA 59.958 42.308 12.38 0.00 42.35 3.86
3710 4073 5.968676 AATACTGGCATTACCTACTGGAA 57.031 39.130 0.00 0.00 40.22 3.53
3711 4074 3.629142 ACTGGCATTACCTACTGGAAC 57.371 47.619 0.00 0.00 40.22 3.62
3712 4075 2.910319 ACTGGCATTACCTACTGGAACA 59.090 45.455 0.00 0.00 40.22 3.18
3738 4101 7.807977 CATATAGTGCCTTATCTGGTTTTGT 57.192 36.000 0.00 0.00 0.00 2.83
3739 4102 7.642669 CATATAGTGCCTTATCTGGTTTTGTG 58.357 38.462 0.00 0.00 0.00 3.33
3740 4103 3.832527 AGTGCCTTATCTGGTTTTGTGT 58.167 40.909 0.00 0.00 0.00 3.72
3741 4104 4.980573 AGTGCCTTATCTGGTTTTGTGTA 58.019 39.130 0.00 0.00 0.00 2.90
3742 4105 5.003804 AGTGCCTTATCTGGTTTTGTGTAG 58.996 41.667 0.00 0.00 0.00 2.74
3743 4106 5.001232 GTGCCTTATCTGGTTTTGTGTAGA 58.999 41.667 0.00 0.00 0.00 2.59
3744 4107 5.001232 TGCCTTATCTGGTTTTGTGTAGAC 58.999 41.667 0.00 0.00 0.00 2.59
3745 4108 5.001232 GCCTTATCTGGTTTTGTGTAGACA 58.999 41.667 0.00 0.00 0.00 3.41
3746 4109 5.122396 GCCTTATCTGGTTTTGTGTAGACAG 59.878 44.000 0.00 0.00 32.26 3.51
3747 4110 6.464222 CCTTATCTGGTTTTGTGTAGACAGA 58.536 40.000 0.00 0.00 39.05 3.41
3748 4111 6.369065 CCTTATCTGGTTTTGTGTAGACAGAC 59.631 42.308 0.00 0.00 37.74 3.51
3749 4112 4.746535 TCTGGTTTTGTGTAGACAGACA 57.253 40.909 9.69 1.23 32.26 3.41
3750 4113 4.693283 TCTGGTTTTGTGTAGACAGACAG 58.307 43.478 9.69 8.91 32.26 3.51
3751 4114 4.404394 TCTGGTTTTGTGTAGACAGACAGA 59.596 41.667 11.33 11.33 32.26 3.41
3752 4115 4.439057 TGGTTTTGTGTAGACAGACAGAC 58.561 43.478 9.69 0.00 32.26 3.51
3753 4116 4.161565 TGGTTTTGTGTAGACAGACAGACT 59.838 41.667 9.69 0.00 32.26 3.24
3754 4117 5.116882 GGTTTTGTGTAGACAGACAGACTT 58.883 41.667 9.69 0.00 32.26 3.01
3755 4118 5.234543 GGTTTTGTGTAGACAGACAGACTTC 59.765 44.000 9.69 0.00 32.26 3.01
3756 4119 3.898517 TGTGTAGACAGACAGACTTCG 57.101 47.619 0.00 0.00 0.00 3.79
3757 4120 3.211865 TGTGTAGACAGACAGACTTCGT 58.788 45.455 0.00 0.00 0.00 3.85
3758 4121 3.250280 TGTGTAGACAGACAGACTTCGTC 59.750 47.826 0.00 0.00 0.00 4.20
3759 4122 3.250280 GTGTAGACAGACAGACTTCGTCA 59.750 47.826 0.00 0.00 35.77 4.35
3760 4123 4.072839 TGTAGACAGACAGACTTCGTCAT 58.927 43.478 0.00 0.00 35.77 3.06
3761 4124 3.567576 AGACAGACAGACTTCGTCATG 57.432 47.619 0.00 0.00 35.77 3.07
3762 4125 2.887783 AGACAGACAGACTTCGTCATGT 59.112 45.455 0.00 0.00 35.77 3.21
3763 4126 3.057876 AGACAGACAGACTTCGTCATGTC 60.058 47.826 13.66 13.66 39.35 3.06
3764 4127 2.623416 ACAGACAGACTTCGTCATGTCA 59.377 45.455 19.08 0.00 40.07 3.58
3765 4128 3.256879 ACAGACAGACTTCGTCATGTCAT 59.743 43.478 19.08 10.43 40.07 3.06
3766 4129 4.459337 ACAGACAGACTTCGTCATGTCATA 59.541 41.667 19.08 0.00 40.07 2.15
3767 4130 5.033507 CAGACAGACTTCGTCATGTCATAG 58.966 45.833 19.08 10.76 40.07 2.23
3768 4131 3.775202 ACAGACTTCGTCATGTCATAGC 58.225 45.455 0.00 0.00 34.60 2.97
3769 4132 3.119291 CAGACTTCGTCATGTCATAGCC 58.881 50.000 0.00 0.00 34.60 3.93
3770 4133 3.027412 AGACTTCGTCATGTCATAGCCT 58.973 45.455 0.00 0.00 34.60 4.58
3771 4134 3.449018 AGACTTCGTCATGTCATAGCCTT 59.551 43.478 0.00 0.00 34.60 4.35
3772 4135 4.081420 AGACTTCGTCATGTCATAGCCTTT 60.081 41.667 0.00 0.00 34.60 3.11
3773 4136 4.579869 ACTTCGTCATGTCATAGCCTTTT 58.420 39.130 0.00 0.00 0.00 2.27
3774 4137 5.003804 ACTTCGTCATGTCATAGCCTTTTT 58.996 37.500 0.00 0.00 0.00 1.94
3775 4138 5.122396 ACTTCGTCATGTCATAGCCTTTTTC 59.878 40.000 0.00 0.00 0.00 2.29
3776 4139 4.832248 TCGTCATGTCATAGCCTTTTTCT 58.168 39.130 0.00 0.00 0.00 2.52
3777 4140 5.245531 TCGTCATGTCATAGCCTTTTTCTT 58.754 37.500 0.00 0.00 0.00 2.52
3778 4141 5.122239 TCGTCATGTCATAGCCTTTTTCTTG 59.878 40.000 0.00 0.00 0.00 3.02
3779 4142 5.106555 CGTCATGTCATAGCCTTTTTCTTGT 60.107 40.000 0.00 0.00 0.00 3.16
3780 4143 6.092122 CGTCATGTCATAGCCTTTTTCTTGTA 59.908 38.462 0.00 0.00 0.00 2.41
3781 4144 7.201644 CGTCATGTCATAGCCTTTTTCTTGTAT 60.202 37.037 0.00 0.00 0.00 2.29
3782 4145 8.462016 GTCATGTCATAGCCTTTTTCTTGTATT 58.538 33.333 0.00 0.00 0.00 1.89
3783 4146 9.023962 TCATGTCATAGCCTTTTTCTTGTATTT 57.976 29.630 0.00 0.00 0.00 1.40
3784 4147 9.643693 CATGTCATAGCCTTTTTCTTGTATTTT 57.356 29.630 0.00 0.00 0.00 1.82
3786 4149 9.691362 TGTCATAGCCTTTTTCTTGTATTTTTC 57.309 29.630 0.00 0.00 0.00 2.29
3787 4150 9.691362 GTCATAGCCTTTTTCTTGTATTTTTCA 57.309 29.630 0.00 0.00 0.00 2.69
3792 4155 9.225436 AGCCTTTTTCTTGTATTTTTCAAAACA 57.775 25.926 0.00 0.00 0.00 2.83
3793 4156 9.833182 GCCTTTTTCTTGTATTTTTCAAAACAA 57.167 25.926 0.00 0.00 0.00 2.83
3806 4169 8.770438 TTTTTCAAAACAAGCTTATTCAGTGT 57.230 26.923 0.00 0.00 0.00 3.55
3807 4170 9.862371 TTTTTCAAAACAAGCTTATTCAGTGTA 57.138 25.926 0.00 0.00 0.00 2.90
3809 4172 9.462174 TTTCAAAACAAGCTTATTCAGTGTATG 57.538 29.630 0.00 0.00 0.00 2.39
3810 4173 8.165239 TCAAAACAAGCTTATTCAGTGTATGT 57.835 30.769 0.00 0.00 0.00 2.29
3811 4174 8.289618 TCAAAACAAGCTTATTCAGTGTATGTC 58.710 33.333 0.00 0.00 0.00 3.06
3812 4175 7.744087 AAACAAGCTTATTCAGTGTATGTCA 57.256 32.000 0.00 0.00 0.00 3.58
3813 4176 7.928307 AACAAGCTTATTCAGTGTATGTCAT 57.072 32.000 0.00 0.00 0.00 3.06
3814 4177 7.312657 ACAAGCTTATTCAGTGTATGTCATG 57.687 36.000 0.00 0.00 0.00 3.07
3815 4178 6.881065 ACAAGCTTATTCAGTGTATGTCATGT 59.119 34.615 0.00 0.00 0.00 3.21
3816 4179 7.065085 ACAAGCTTATTCAGTGTATGTCATGTC 59.935 37.037 0.00 0.00 0.00 3.06
3817 4180 6.882656 AGCTTATTCAGTGTATGTCATGTCT 58.117 36.000 0.00 0.00 0.00 3.41
3818 4181 8.011844 AGCTTATTCAGTGTATGTCATGTCTA 57.988 34.615 0.00 0.00 0.00 2.59
3819 4182 8.140628 AGCTTATTCAGTGTATGTCATGTCTAG 58.859 37.037 0.00 0.00 0.00 2.43
3820 4183 7.095857 GCTTATTCAGTGTATGTCATGTCTAGC 60.096 40.741 0.00 0.00 0.00 3.42
3821 4184 5.659440 TTCAGTGTATGTCATGTCTAGCA 57.341 39.130 0.00 0.00 0.00 3.49
3822 4185 5.659440 TCAGTGTATGTCATGTCTAGCAA 57.341 39.130 0.00 0.00 0.00 3.91
3823 4186 6.225981 TCAGTGTATGTCATGTCTAGCAAT 57.774 37.500 0.00 0.00 0.00 3.56
3824 4187 6.643388 TCAGTGTATGTCATGTCTAGCAATT 58.357 36.000 0.00 0.00 0.00 2.32
3825 4188 6.536224 TCAGTGTATGTCATGTCTAGCAATTG 59.464 38.462 0.00 0.00 0.00 2.32
3826 4189 5.295292 AGTGTATGTCATGTCTAGCAATTGC 59.705 40.000 23.05 23.05 42.49 3.56
3827 4190 5.065090 GTGTATGTCATGTCTAGCAATTGCA 59.935 40.000 30.89 16.23 45.16 4.08
3828 4191 5.824097 TGTATGTCATGTCTAGCAATTGCAT 59.176 36.000 30.89 18.26 45.16 3.96
3829 4192 4.888038 TGTCATGTCTAGCAATTGCATC 57.112 40.909 30.89 17.51 45.16 3.91
3830 4193 4.520179 TGTCATGTCTAGCAATTGCATCT 58.480 39.130 30.89 14.14 45.16 2.90
3831 4194 4.334481 TGTCATGTCTAGCAATTGCATCTG 59.666 41.667 30.89 17.95 45.16 2.90
3832 4195 4.334759 GTCATGTCTAGCAATTGCATCTGT 59.665 41.667 30.89 13.39 45.16 3.41
3833 4196 4.573607 TCATGTCTAGCAATTGCATCTGTC 59.426 41.667 30.89 15.93 45.16 3.51
3834 4197 3.941573 TGTCTAGCAATTGCATCTGTCA 58.058 40.909 30.89 18.04 45.16 3.58
3835 4198 3.937079 TGTCTAGCAATTGCATCTGTCAG 59.063 43.478 30.89 15.18 45.16 3.51
3836 4199 3.311871 GTCTAGCAATTGCATCTGTCAGG 59.688 47.826 30.89 10.28 45.16 3.86
3837 4200 2.211250 AGCAATTGCATCTGTCAGGT 57.789 45.000 30.89 4.40 45.16 4.00
3838 4201 2.522185 AGCAATTGCATCTGTCAGGTT 58.478 42.857 30.89 3.86 45.16 3.50
3839 4202 2.895404 AGCAATTGCATCTGTCAGGTTT 59.105 40.909 30.89 3.64 45.16 3.27
3857 4220 5.414144 CAGGTTTTGTTGGTGATTGGTTTTT 59.586 36.000 0.00 0.00 0.00 1.94
3917 4280 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3918 4281 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3919 4282 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3920 4283 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3921 4284 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3927 4290 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3928 4291 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3929 4292 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3930 4293 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3933 4296 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3945 4308 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3946 4309 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3947 4310 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3948 4311 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3949 4312 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3950 4313 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3951 4314 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3952 4315 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3953 4316 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3954 4317 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3955 4318 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3956 4319 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3957 4320 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3958 4321 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3959 4322 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3960 4323 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3961 4324 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3962 4325 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3963 4326 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3973 4336 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3974 4337 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3975 4338 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3976 4339 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3977 4340 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3978 4341 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3979 4342 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3980 4343 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3981 4344 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3982 4345 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3983 4346 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3984 4347 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3985 4348 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3986 4349 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3987 4350 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3988 4351 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
4003 4366 7.362920 CCTTTCCCTACATTTTTGTCACCATAG 60.363 40.741 0.00 0.00 0.00 2.23
4047 4410 1.536766 TCGCATGCAGAAAAGTTGGAG 59.463 47.619 19.57 0.00 0.00 3.86
4051 4414 3.365767 GCATGCAGAAAAGTTGGAGACTC 60.366 47.826 14.21 0.00 37.72 3.36
4216 4584 1.609208 AGTGGTTGACTTGGTGCATC 58.391 50.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.735700 CGCGCTACAGGAACTCATGAA 60.736 52.381 5.56 0.00 34.60 2.57
1 2 0.179137 CGCGCTACAGGAACTCATGA 60.179 55.000 5.56 0.00 34.60 3.07
2 3 1.756375 GCGCGCTACAGGAACTCATG 61.756 60.000 26.67 0.00 34.60 3.07
3 4 1.519455 GCGCGCTACAGGAACTCAT 60.519 57.895 26.67 0.00 34.60 2.90
4 5 2.126071 GCGCGCTACAGGAACTCA 60.126 61.111 26.67 0.00 34.60 3.41
5 6 2.126071 TGCGCGCTACAGGAACTC 60.126 61.111 33.29 0.00 34.60 3.01
6 7 2.125912 CTGCGCGCTACAGGAACT 60.126 61.111 33.29 0.00 43.88 3.01
7 8 2.432628 ACTGCGCGCTACAGGAAC 60.433 61.111 33.29 0.00 39.55 3.62
8 9 2.432456 CACTGCGCGCTACAGGAA 60.432 61.111 33.29 8.98 39.55 3.36
9 10 4.435436 CCACTGCGCGCTACAGGA 62.435 66.667 33.29 9.83 39.55 3.86
10 11 3.932580 TTCCACTGCGCGCTACAGG 62.933 63.158 33.29 26.00 39.55 4.00
11 12 1.565156 TTTTCCACTGCGCGCTACAG 61.565 55.000 33.29 23.44 41.08 2.74
12 13 0.953471 ATTTTCCACTGCGCGCTACA 60.953 50.000 33.29 11.56 0.00 2.74
13 14 0.247695 GATTTTCCACTGCGCGCTAC 60.248 55.000 33.29 3.49 0.00 3.58
14 15 0.672091 TGATTTTCCACTGCGCGCTA 60.672 50.000 33.29 17.49 0.00 4.26
15 16 1.965930 TGATTTTCCACTGCGCGCT 60.966 52.632 33.29 10.46 0.00 5.92
16 17 1.797537 GTGATTTTCCACTGCGCGC 60.798 57.895 27.26 27.26 34.38 6.86
17 18 0.453282 CTGTGATTTTCCACTGCGCG 60.453 55.000 0.00 0.00 37.89 6.86
18 19 0.874390 TCTGTGATTTTCCACTGCGC 59.126 50.000 0.00 0.00 37.89 6.09
19 20 1.466167 CCTCTGTGATTTTCCACTGCG 59.534 52.381 0.00 0.00 37.89 5.18
20 21 1.200948 GCCTCTGTGATTTTCCACTGC 59.799 52.381 0.00 0.00 37.89 4.40
21 22 2.227388 GTGCCTCTGTGATTTTCCACTG 59.773 50.000 0.00 0.00 37.89 3.66
22 23 2.107204 AGTGCCTCTGTGATTTTCCACT 59.893 45.455 0.00 0.00 37.89 4.00
23 24 2.227388 CAGTGCCTCTGTGATTTTCCAC 59.773 50.000 0.00 0.00 39.17 4.02
24 25 2.507484 CAGTGCCTCTGTGATTTTCCA 58.493 47.619 0.00 0.00 39.17 3.53
25 26 1.200948 GCAGTGCCTCTGTGATTTTCC 59.799 52.381 2.85 0.00 45.23 3.13
26 27 1.200948 GGCAGTGCCTCTGTGATTTTC 59.799 52.381 27.48 0.00 46.69 2.29
27 28 1.251251 GGCAGTGCCTCTGTGATTTT 58.749 50.000 27.48 0.00 46.69 1.82
28 29 2.952714 GGCAGTGCCTCTGTGATTT 58.047 52.632 27.48 0.00 46.69 2.17
29 30 4.730487 GGCAGTGCCTCTGTGATT 57.270 55.556 27.48 0.00 46.69 2.57
45 46 3.932580 TTCCACTGCGCGCTACAGG 62.933 63.158 33.29 26.00 39.55 4.00
46 47 1.565156 TTTTCCACTGCGCGCTACAG 61.565 55.000 33.29 23.44 41.08 2.74
47 48 0.953471 ATTTTCCACTGCGCGCTACA 60.953 50.000 33.29 11.56 0.00 2.74
48 49 0.247695 GATTTTCCACTGCGCGCTAC 60.248 55.000 33.29 3.49 0.00 3.58
49 50 0.672091 TGATTTTCCACTGCGCGCTA 60.672 50.000 33.29 17.49 0.00 4.26
50 51 1.965930 TGATTTTCCACTGCGCGCT 60.966 52.632 33.29 10.46 0.00 5.92
51 52 1.797537 GTGATTTTCCACTGCGCGC 60.798 57.895 27.26 27.26 34.38 6.86
52 53 0.453282 CTGTGATTTTCCACTGCGCG 60.453 55.000 0.00 0.00 37.89 6.86
53 54 0.874390 TCTGTGATTTTCCACTGCGC 59.126 50.000 0.00 0.00 37.89 6.09
54 55 1.466167 CCTCTGTGATTTTCCACTGCG 59.534 52.381 0.00 0.00 37.89 5.18
55 56 1.200948 GCCTCTGTGATTTTCCACTGC 59.799 52.381 0.00 0.00 37.89 4.40
56 57 2.227388 GTGCCTCTGTGATTTTCCACTG 59.773 50.000 0.00 0.00 37.89 3.66
57 58 2.107204 AGTGCCTCTGTGATTTTCCACT 59.893 45.455 0.00 0.00 37.89 4.00
58 59 2.227388 CAGTGCCTCTGTGATTTTCCAC 59.773 50.000 0.00 0.00 39.17 4.02
59 60 2.507484 CAGTGCCTCTGTGATTTTCCA 58.493 47.619 0.00 0.00 39.17 3.53
60 61 1.200948 GCAGTGCCTCTGTGATTTTCC 59.799 52.381 2.85 0.00 45.23 3.13
61 62 1.881973 TGCAGTGCCTCTGTGATTTTC 59.118 47.619 13.72 0.00 45.23 2.29
62 63 1.884579 CTGCAGTGCCTCTGTGATTTT 59.115 47.619 13.72 0.00 45.23 1.82
63 64 1.531423 CTGCAGTGCCTCTGTGATTT 58.469 50.000 13.72 0.00 45.23 2.17
64 65 0.322277 CCTGCAGTGCCTCTGTGATT 60.322 55.000 13.72 0.00 45.23 2.57
65 66 1.298993 CCTGCAGTGCCTCTGTGAT 59.701 57.895 13.72 0.00 45.23 3.06
66 67 2.745698 CCTGCAGTGCCTCTGTGA 59.254 61.111 13.72 0.00 45.23 3.58
67 68 2.176314 TAGCCTGCAGTGCCTCTGTG 62.176 60.000 19.56 0.64 45.23 3.66
68 69 1.915266 TAGCCTGCAGTGCCTCTGT 60.915 57.895 19.56 7.16 45.23 3.41
69 70 1.449246 GTAGCCTGCAGTGCCTCTG 60.449 63.158 19.56 0.00 46.12 3.35
70 71 0.324738 TAGTAGCCTGCAGTGCCTCT 60.325 55.000 19.56 18.65 0.00 3.69
71 72 0.755686 ATAGTAGCCTGCAGTGCCTC 59.244 55.000 19.56 14.03 0.00 4.70
72 73 1.967066 CTATAGTAGCCTGCAGTGCCT 59.033 52.381 19.56 14.17 0.00 4.75
73 74 1.606737 GCTATAGTAGCCTGCAGTGCC 60.607 57.143 19.56 8.76 45.95 5.01
74 75 1.789506 GCTATAGTAGCCTGCAGTGC 58.210 55.000 13.81 15.45 45.95 4.40
84 85 3.685756 GCACGGTAGAGGAGCTATAGTAG 59.314 52.174 0.84 0.00 0.00 2.57
85 86 3.558746 GGCACGGTAGAGGAGCTATAGTA 60.559 52.174 0.84 0.00 0.00 1.82
86 87 2.506444 GCACGGTAGAGGAGCTATAGT 58.494 52.381 0.84 0.00 0.00 2.12
87 88 1.813786 GGCACGGTAGAGGAGCTATAG 59.186 57.143 0.00 0.00 0.00 1.31
88 89 1.424302 AGGCACGGTAGAGGAGCTATA 59.576 52.381 0.00 0.00 0.00 1.31
89 90 0.186386 AGGCACGGTAGAGGAGCTAT 59.814 55.000 0.00 0.00 0.00 2.97
90 91 0.033405 AAGGCACGGTAGAGGAGCTA 60.033 55.000 0.00 0.00 0.00 3.32
91 92 1.305381 AAGGCACGGTAGAGGAGCT 60.305 57.895 0.00 0.00 0.00 4.09
92 93 1.142097 GAAGGCACGGTAGAGGAGC 59.858 63.158 0.00 0.00 0.00 4.70
93 94 0.457851 CTGAAGGCACGGTAGAGGAG 59.542 60.000 0.00 0.00 0.00 3.69
94 95 1.605058 GCTGAAGGCACGGTAGAGGA 61.605 60.000 0.00 0.00 41.35 3.71
95 96 1.153549 GCTGAAGGCACGGTAGAGG 60.154 63.158 0.00 0.00 41.35 3.69
96 97 4.504132 GCTGAAGGCACGGTAGAG 57.496 61.111 0.00 0.00 41.35 2.43
105 106 1.805945 CGTCTACCGTGCTGAAGGC 60.806 63.158 0.00 0.00 42.22 4.35
106 107 0.179161 CTCGTCTACCGTGCTGAAGG 60.179 60.000 0.00 0.00 37.94 3.46
107 108 3.314339 CTCGTCTACCGTGCTGAAG 57.686 57.895 0.00 0.00 37.94 3.02
116 117 2.493501 GGAACCGGCTCGTCTACC 59.506 66.667 0.00 0.00 0.00 3.18
117 118 2.493501 GGGAACCGGCTCGTCTAC 59.506 66.667 0.00 0.00 40.86 2.59
131 132 0.323633 CATGGCATGTTCCTGTGGGA 60.324 55.000 19.32 0.00 40.36 4.37
132 133 1.324740 CCATGGCATGTTCCTGTGGG 61.325 60.000 24.80 3.56 32.56 4.61
138 139 1.361271 CGCATCCATGGCATGTTCC 59.639 57.895 24.80 10.00 0.00 3.62
169 170 3.213206 AGTGTGCATTGGAGTCTGAAA 57.787 42.857 0.00 0.00 0.00 2.69
185 186 7.441458 GGGCTCGTAAAATTATGAGATAAGTGT 59.559 37.037 21.09 0.00 45.39 3.55
196 204 1.601166 GGCCGGGCTCGTAAAATTAT 58.399 50.000 22.87 0.00 33.95 1.28
212 220 0.250338 AGAACTTTCAGTGACGGGCC 60.250 55.000 0.00 0.00 0.00 5.80
280 310 7.132213 TCTACTTTTTCACTGCGAATTTTCAG 58.868 34.615 6.41 6.41 32.32 3.02
335 369 3.365265 GCAGGGTTTGGTCGCCTG 61.365 66.667 0.00 0.00 0.00 4.85
344 378 1.918262 TGATCTGATGGAGCAGGGTTT 59.082 47.619 0.00 0.00 35.23 3.27
359 393 8.868522 TCTTGGTTTGTTTAATCTGATGATCT 57.131 30.769 0.00 0.00 31.51 2.75
360 394 8.950210 TCTCTTGGTTTGTTTAATCTGATGATC 58.050 33.333 0.00 0.00 31.51 2.92
361 395 8.868522 TCTCTTGGTTTGTTTAATCTGATGAT 57.131 30.769 0.00 0.00 33.70 2.45
362 396 8.156820 TCTCTCTTGGTTTGTTTAATCTGATGA 58.843 33.333 0.00 0.00 0.00 2.92
363 397 8.327941 TCTCTCTTGGTTTGTTTAATCTGATG 57.672 34.615 0.00 0.00 0.00 3.07
364 398 8.378565 TCTCTCTCTTGGTTTGTTTAATCTGAT 58.621 33.333 0.00 0.00 0.00 2.90
365 399 7.735917 TCTCTCTCTTGGTTTGTTTAATCTGA 58.264 34.615 0.00 0.00 0.00 3.27
366 400 7.360776 GCTCTCTCTCTTGGTTTGTTTAATCTG 60.361 40.741 0.00 0.00 0.00 2.90
384 428 1.398692 GAATCTGGTCGGCTCTCTCT 58.601 55.000 0.00 0.00 0.00 3.10
475 534 1.824329 AGACGTGAGCGGATCGGAT 60.824 57.895 4.16 0.00 43.45 4.18
501 580 1.943507 GCTGTTTCTCCTCCTGTGCTC 60.944 57.143 0.00 0.00 0.00 4.26
509 588 1.000955 TCGGTGAAGCTGTTTCTCCTC 59.999 52.381 18.73 3.48 43.94 3.71
517 596 0.528470 GCTCTACTCGGTGAAGCTGT 59.472 55.000 0.00 0.00 0.00 4.40
518 597 0.528017 TGCTCTACTCGGTGAAGCTG 59.472 55.000 0.00 0.00 0.00 4.24
519 598 0.814457 CTGCTCTACTCGGTGAAGCT 59.186 55.000 11.06 0.00 0.00 3.74
520 599 0.811915 TCTGCTCTACTCGGTGAAGC 59.188 55.000 0.00 0.00 0.00 3.86
523 602 2.907634 CTACTCTGCTCTACTCGGTGA 58.092 52.381 0.00 0.00 0.00 4.02
525 604 1.670791 GCTACTCTGCTCTACTCGGT 58.329 55.000 0.00 0.00 0.00 4.69
526 605 0.948678 GGCTACTCTGCTCTACTCGG 59.051 60.000 0.00 0.00 0.00 4.63
528 607 2.225491 CGATGGCTACTCTGCTCTACTC 59.775 54.545 0.00 0.00 0.00 2.59
530 609 2.222886 TCGATGGCTACTCTGCTCTAC 58.777 52.381 0.00 0.00 0.00 2.59
531 610 2.619177 GTTCGATGGCTACTCTGCTCTA 59.381 50.000 0.00 0.00 0.00 2.43
536 651 2.534298 CAGTGTTCGATGGCTACTCTG 58.466 52.381 2.83 2.83 0.00 3.35
546 661 0.179100 CATCGGCTCCAGTGTTCGAT 60.179 55.000 0.00 0.00 40.57 3.59
612 733 4.699522 GGTGTGCGGTGGGGACTC 62.700 72.222 0.00 0.00 37.93 3.36
624 745 3.266376 AAACGACGGTGCGGTGTG 61.266 61.111 0.00 0.00 35.12 3.82
625 746 3.266376 CAAACGACGGTGCGGTGT 61.266 61.111 0.00 0.00 35.12 4.16
695 824 4.116238 GCTATTTGCTACTCACTCCAGTC 58.884 47.826 0.00 0.00 38.95 3.51
699 828 2.860735 CGTGCTATTTGCTACTCACTCC 59.139 50.000 0.00 0.00 43.37 3.85
703 832 1.651987 GGCGTGCTATTTGCTACTCA 58.348 50.000 0.00 0.00 43.37 3.41
815 944 2.337749 CTACTAGCGCCACCACGAGG 62.338 65.000 2.29 0.00 42.21 4.63
816 945 1.064296 CTACTAGCGCCACCACGAG 59.936 63.158 2.29 0.00 34.06 4.18
819 948 1.437986 CTCCTACTAGCGCCACCAC 59.562 63.158 2.29 0.00 0.00 4.16
821 950 2.356818 CTGCTCCTACTAGCGCCACC 62.357 65.000 2.29 0.00 45.85 4.61
823 952 0.106868 TACTGCTCCTACTAGCGCCA 60.107 55.000 2.29 0.00 45.85 5.69
827 956 1.000717 GCTGCTACTGCTCCTACTAGC 60.001 57.143 0.00 0.00 43.08 3.42
838 967 0.743345 GGGTTTACCGGCTGCTACTG 60.743 60.000 0.00 0.00 36.71 2.74
949 1094 2.558313 GCTCGCTCGCTTGCTTTT 59.442 55.556 0.00 0.00 0.00 2.27
1027 1173 4.508128 GTCGATCCGCTTGCCCGA 62.508 66.667 0.00 0.00 0.00 5.14
1077 1223 1.375523 CAGGTCGGCCTTGTGGTAC 60.376 63.158 5.38 0.00 44.18 3.34
1358 1516 1.446272 GTGGCTTCCTTCCTCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
1359 1517 1.446272 CGTGGCTTCCTTCCTCGTC 60.446 63.158 0.00 0.00 36.27 4.20
1360 1518 1.906824 TCGTGGCTTCCTTCCTCGT 60.907 57.895 0.00 0.00 40.33 4.18
1401 1559 1.078918 CTCCTTCCGCAGCACATCA 60.079 57.895 0.00 0.00 0.00 3.07
1585 1755 2.997899 GGAAGCGGTCCATCATGAG 58.002 57.895 0.09 0.00 46.97 2.90
1725 1895 1.531423 GATCATCATCGCTGCCCATT 58.469 50.000 0.00 0.00 0.00 3.16
1758 1928 0.910088 GGTAAGGGAGCTGGACAGGT 60.910 60.000 3.35 3.35 42.58 4.00
1836 2006 3.374098 CCTCATCCTCTTCTTCCTCCTCT 60.374 52.174 0.00 0.00 0.00 3.69
1845 2015 3.636300 CGAAGTCATCCTCATCCTCTTCT 59.364 47.826 0.00 0.00 0.00 2.85
1857 2027 2.095364 ACTGTGTACGTCGAAGTCATCC 60.095 50.000 7.43 0.00 0.00 3.51
1875 2045 1.737793 GATGCAAAACCTCGGGTACTG 59.262 52.381 0.00 0.00 33.12 2.74
1926 2096 6.925165 TCAGTAGTAACAAGGAGGTTTTTACG 59.075 38.462 0.00 0.00 32.29 3.18
1982 2152 3.839432 CTCTTCCTCCCCGACGCC 61.839 72.222 0.00 0.00 0.00 5.68
1995 2165 1.777272 GATACCAATCCCCTGCCTCTT 59.223 52.381 0.00 0.00 0.00 2.85
2152 2322 7.074653 TGTTTAGAACTACCACTCCTGAAAT 57.925 36.000 0.00 0.00 0.00 2.17
2524 2694 2.644299 TGGAGCTTGATCCCTTCAAAGA 59.356 45.455 2.26 0.00 43.64 2.52
2525 2695 3.077484 TGGAGCTTGATCCCTTCAAAG 57.923 47.619 2.26 0.00 43.64 2.77
2558 2728 4.801147 TCTTCATGCAATGTTCTATCGC 57.199 40.909 0.00 0.00 46.80 4.58
3018 3188 1.251251 CCCAGGGAGCTTGTTTCTTG 58.749 55.000 0.00 0.00 0.00 3.02
3408 3578 2.465860 TAGTACGCAAACAGGCATGT 57.534 45.000 0.00 0.00 43.15 3.21
3422 3592 6.202516 TGGGCAACATAAAGCAAATAGTAC 57.797 37.500 0.00 0.00 39.74 2.73
3651 4014 3.132160 GACATGCATCACCAGAGAGATG 58.868 50.000 0.00 0.00 42.19 2.90
3652 4015 3.039743 AGACATGCATCACCAGAGAGAT 58.960 45.455 0.00 0.00 0.00 2.75
3653 4016 2.464782 AGACATGCATCACCAGAGAGA 58.535 47.619 0.00 0.00 0.00 3.10
3654 4017 2.937149 CAAGACATGCATCACCAGAGAG 59.063 50.000 0.00 0.00 0.00 3.20
3655 4018 2.981898 CAAGACATGCATCACCAGAGA 58.018 47.619 0.00 0.00 0.00 3.10
3667 4030 6.992063 ATTACTGGAAACTAGCAAGACATG 57.008 37.500 0.00 0.00 0.00 3.21
3668 4031 7.766278 CAGTATTACTGGAAACTAGCAAGACAT 59.234 37.037 14.86 0.00 42.35 3.06
3669 4032 7.097192 CAGTATTACTGGAAACTAGCAAGACA 58.903 38.462 14.86 0.00 42.35 3.41
3670 4033 7.527084 CAGTATTACTGGAAACTAGCAAGAC 57.473 40.000 14.86 0.00 42.35 3.01
3684 4047 6.041637 TCCAGTAGGTAATGCCAGTATTACTG 59.958 42.308 15.58 15.58 41.23 2.74
3685 4048 6.141083 TCCAGTAGGTAATGCCAGTATTACT 58.859 40.000 15.30 7.01 41.23 2.24
3686 4049 6.415206 TCCAGTAGGTAATGCCAGTATTAC 57.585 41.667 9.39 9.39 40.91 1.89
3687 4050 6.384595 TGTTCCAGTAGGTAATGCCAGTATTA 59.615 38.462 0.00 0.00 40.61 0.98
3688 4051 5.190925 TGTTCCAGTAGGTAATGCCAGTATT 59.809 40.000 0.00 0.00 40.61 1.89
3689 4052 4.719773 TGTTCCAGTAGGTAATGCCAGTAT 59.280 41.667 0.00 0.00 40.61 2.12
3690 4053 4.098155 TGTTCCAGTAGGTAATGCCAGTA 58.902 43.478 0.00 0.00 40.61 2.74
3691 4054 2.910319 TGTTCCAGTAGGTAATGCCAGT 59.090 45.455 0.00 0.00 40.61 4.00
3692 4055 3.535561 CTGTTCCAGTAGGTAATGCCAG 58.464 50.000 0.00 0.00 40.61 4.85
3693 4056 2.355716 GCTGTTCCAGTAGGTAATGCCA 60.356 50.000 0.00 0.00 35.05 4.92
3694 4057 2.289565 GCTGTTCCAGTAGGTAATGCC 58.710 52.381 0.00 0.00 33.43 4.40
3695 4058 2.985896 TGCTGTTCCAGTAGGTAATGC 58.014 47.619 0.00 0.00 33.43 3.56
3696 4059 7.600375 CACTATATGCTGTTCCAGTAGGTAATG 59.400 40.741 0.00 0.00 33.43 1.90
3697 4060 7.671302 CACTATATGCTGTTCCAGTAGGTAAT 58.329 38.462 0.00 0.00 33.43 1.89
3698 4061 7.050970 CACTATATGCTGTTCCAGTAGGTAA 57.949 40.000 0.00 0.00 33.43 2.85
3699 4062 6.650427 CACTATATGCTGTTCCAGTAGGTA 57.350 41.667 0.00 0.00 33.43 3.08
3700 4063 5.537300 CACTATATGCTGTTCCAGTAGGT 57.463 43.478 0.00 0.00 33.43 3.08
3714 4077 7.283127 ACACAAAACCAGATAAGGCACTATATG 59.717 37.037 0.00 0.00 38.49 1.78
3715 4078 7.346471 ACACAAAACCAGATAAGGCACTATAT 58.654 34.615 0.00 0.00 38.49 0.86
3716 4079 6.717289 ACACAAAACCAGATAAGGCACTATA 58.283 36.000 0.00 0.00 38.49 1.31
3717 4080 5.570320 ACACAAAACCAGATAAGGCACTAT 58.430 37.500 0.00 0.00 38.49 2.12
3718 4081 4.980573 ACACAAAACCAGATAAGGCACTA 58.019 39.130 0.00 0.00 38.49 2.74
3720 4083 5.001232 TCTACACAAAACCAGATAAGGCAC 58.999 41.667 0.00 0.00 0.00 5.01
3721 4084 5.001232 GTCTACACAAAACCAGATAAGGCA 58.999 41.667 0.00 0.00 0.00 4.75
3722 4085 5.001232 TGTCTACACAAAACCAGATAAGGC 58.999 41.667 0.00 0.00 0.00 4.35
3723 4086 6.369065 GTCTGTCTACACAAAACCAGATAAGG 59.631 42.308 0.00 0.00 32.20 2.69
3724 4087 6.929049 TGTCTGTCTACACAAAACCAGATAAG 59.071 38.462 0.00 0.00 32.20 1.73
3725 4088 6.822442 TGTCTGTCTACACAAAACCAGATAA 58.178 36.000 0.00 0.00 32.20 1.75
3726 4089 6.266786 TCTGTCTGTCTACACAAAACCAGATA 59.733 38.462 0.00 0.00 32.20 1.98
3727 4090 5.070446 TCTGTCTGTCTACACAAAACCAGAT 59.930 40.000 0.00 0.00 32.20 2.90
3728 4091 4.404394 TCTGTCTGTCTACACAAAACCAGA 59.596 41.667 0.00 0.00 29.82 3.86
3729 4092 4.508124 GTCTGTCTGTCTACACAAAACCAG 59.492 45.833 0.00 0.00 29.82 4.00
3730 4093 4.161565 AGTCTGTCTGTCTACACAAAACCA 59.838 41.667 0.00 0.00 29.82 3.67
3731 4094 4.694339 AGTCTGTCTGTCTACACAAAACC 58.306 43.478 0.00 0.00 29.82 3.27
3732 4095 5.051641 CGAAGTCTGTCTGTCTACACAAAAC 60.052 44.000 0.00 0.00 29.82 2.43
3733 4096 5.041287 CGAAGTCTGTCTGTCTACACAAAA 58.959 41.667 0.00 0.00 29.82 2.44
3734 4097 4.097437 ACGAAGTCTGTCTGTCTACACAAA 59.903 41.667 0.00 0.00 29.74 2.83
3735 4098 3.630769 ACGAAGTCTGTCTGTCTACACAA 59.369 43.478 0.00 0.00 29.74 3.33
3736 4099 3.211865 ACGAAGTCTGTCTGTCTACACA 58.788 45.455 0.00 0.00 29.74 3.72
3737 4100 3.900388 ACGAAGTCTGTCTGTCTACAC 57.100 47.619 0.00 0.00 29.74 2.90
3752 4115 5.352569 AGAAAAAGGCTATGACATGACGAAG 59.647 40.000 0.00 0.00 0.00 3.79
3753 4116 5.245531 AGAAAAAGGCTATGACATGACGAA 58.754 37.500 0.00 0.00 0.00 3.85
3754 4117 4.832248 AGAAAAAGGCTATGACATGACGA 58.168 39.130 0.00 0.00 0.00 4.20
3755 4118 5.106555 ACAAGAAAAAGGCTATGACATGACG 60.107 40.000 0.00 0.00 0.00 4.35
3756 4119 6.259550 ACAAGAAAAAGGCTATGACATGAC 57.740 37.500 0.00 0.00 0.00 3.06
3757 4120 8.579850 AATACAAGAAAAAGGCTATGACATGA 57.420 30.769 0.00 0.00 0.00 3.07
3758 4121 9.643693 AAAATACAAGAAAAAGGCTATGACATG 57.356 29.630 0.00 0.00 0.00 3.21
3760 4123 9.691362 GAAAAATACAAGAAAAAGGCTATGACA 57.309 29.630 0.00 0.00 0.00 3.58
3761 4124 9.691362 TGAAAAATACAAGAAAAAGGCTATGAC 57.309 29.630 0.00 0.00 0.00 3.06
3766 4129 9.225436 TGTTTTGAAAAATACAAGAAAAAGGCT 57.775 25.926 0.00 0.00 0.00 4.58
3767 4130 9.833182 TTGTTTTGAAAAATACAAGAAAAAGGC 57.167 25.926 0.00 0.00 0.00 4.35
3780 4143 9.382275 ACACTGAATAAGCTTGTTTTGAAAAAT 57.618 25.926 9.86 0.00 0.00 1.82
3781 4144 8.770438 ACACTGAATAAGCTTGTTTTGAAAAA 57.230 26.923 9.86 0.00 0.00 1.94
3783 4146 9.462174 CATACACTGAATAAGCTTGTTTTGAAA 57.538 29.630 9.86 3.19 0.00 2.69
3784 4147 8.629158 ACATACACTGAATAAGCTTGTTTTGAA 58.371 29.630 9.86 0.00 0.00 2.69
3785 4148 8.165239 ACATACACTGAATAAGCTTGTTTTGA 57.835 30.769 9.86 0.00 0.00 2.69
3786 4149 8.075574 TGACATACACTGAATAAGCTTGTTTTG 58.924 33.333 9.86 9.90 0.00 2.44
3787 4150 8.165239 TGACATACACTGAATAAGCTTGTTTT 57.835 30.769 9.86 0.00 0.00 2.43
3788 4151 7.744087 TGACATACACTGAATAAGCTTGTTT 57.256 32.000 9.86 2.40 0.00 2.83
3789 4152 7.391554 ACATGACATACACTGAATAAGCTTGTT 59.608 33.333 9.86 9.05 0.00 2.83
3790 4153 6.881065 ACATGACATACACTGAATAAGCTTGT 59.119 34.615 9.86 0.00 0.00 3.16
3791 4154 7.279536 AGACATGACATACACTGAATAAGCTTG 59.720 37.037 9.86 0.00 0.00 4.01
3792 4155 7.334090 AGACATGACATACACTGAATAAGCTT 58.666 34.615 3.48 3.48 0.00 3.74
3793 4156 6.882656 AGACATGACATACACTGAATAAGCT 58.117 36.000 0.00 0.00 0.00 3.74
3794 4157 7.095857 GCTAGACATGACATACACTGAATAAGC 60.096 40.741 0.00 0.00 0.00 3.09
3795 4158 7.922811 TGCTAGACATGACATACACTGAATAAG 59.077 37.037 0.00 0.00 0.00 1.73
3796 4159 7.781056 TGCTAGACATGACATACACTGAATAA 58.219 34.615 0.00 0.00 0.00 1.40
3797 4160 7.346751 TGCTAGACATGACATACACTGAATA 57.653 36.000 0.00 0.00 0.00 1.75
3798 4161 6.225981 TGCTAGACATGACATACACTGAAT 57.774 37.500 0.00 0.00 0.00 2.57
3799 4162 5.659440 TGCTAGACATGACATACACTGAA 57.341 39.130 0.00 0.00 0.00 3.02
3800 4163 5.659440 TTGCTAGACATGACATACACTGA 57.341 39.130 0.00 0.00 0.00 3.41
3801 4164 6.712549 CAATTGCTAGACATGACATACACTG 58.287 40.000 0.00 0.00 0.00 3.66
3802 4165 5.295292 GCAATTGCTAGACATGACATACACT 59.705 40.000 23.21 0.00 38.21 3.55
3803 4166 5.065090 TGCAATTGCTAGACATGACATACAC 59.935 40.000 29.37 0.00 42.66 2.90
3804 4167 5.184711 TGCAATTGCTAGACATGACATACA 58.815 37.500 29.37 1.93 42.66 2.29
3805 4168 5.739752 TGCAATTGCTAGACATGACATAC 57.260 39.130 29.37 0.00 42.66 2.39
3806 4169 6.204108 CAGATGCAATTGCTAGACATGACATA 59.796 38.462 29.37 6.35 42.66 2.29
3807 4170 5.008712 CAGATGCAATTGCTAGACATGACAT 59.991 40.000 29.37 11.66 42.66 3.06
3808 4171 4.334481 CAGATGCAATTGCTAGACATGACA 59.666 41.667 29.37 7.09 42.66 3.58
3809 4172 4.334759 ACAGATGCAATTGCTAGACATGAC 59.665 41.667 29.37 10.83 42.66 3.06
3810 4173 4.520179 ACAGATGCAATTGCTAGACATGA 58.480 39.130 29.37 8.59 42.66 3.07
3811 4174 4.334481 TGACAGATGCAATTGCTAGACATG 59.666 41.667 29.37 19.96 42.66 3.21
3812 4175 4.520179 TGACAGATGCAATTGCTAGACAT 58.480 39.130 29.37 15.27 42.66 3.06
3813 4176 3.937079 CTGACAGATGCAATTGCTAGACA 59.063 43.478 29.37 19.45 42.66 3.41
3814 4177 3.311871 CCTGACAGATGCAATTGCTAGAC 59.688 47.826 29.37 17.36 42.66 2.59
3815 4178 3.054875 ACCTGACAGATGCAATTGCTAGA 60.055 43.478 29.37 11.63 42.66 2.43
3816 4179 3.276857 ACCTGACAGATGCAATTGCTAG 58.723 45.455 29.37 18.26 42.66 3.42
3817 4180 3.354948 ACCTGACAGATGCAATTGCTA 57.645 42.857 29.37 16.96 42.66 3.49
3818 4181 2.211250 ACCTGACAGATGCAATTGCT 57.789 45.000 29.37 15.95 42.66 3.91
3819 4182 3.308438 AAACCTGACAGATGCAATTGC 57.692 42.857 23.69 23.69 42.50 3.56
3820 4183 4.624015 ACAAAACCTGACAGATGCAATTG 58.376 39.130 3.32 0.00 0.00 2.32
3821 4184 4.942761 ACAAAACCTGACAGATGCAATT 57.057 36.364 3.32 0.00 0.00 2.32
3822 4185 4.501915 CCAACAAAACCTGACAGATGCAAT 60.502 41.667 3.32 0.00 0.00 3.56
3823 4186 3.181477 CCAACAAAACCTGACAGATGCAA 60.181 43.478 3.32 0.00 0.00 4.08
3824 4187 2.361757 CCAACAAAACCTGACAGATGCA 59.638 45.455 3.32 0.00 0.00 3.96
3825 4188 2.362077 ACCAACAAAACCTGACAGATGC 59.638 45.455 3.32 0.00 0.00 3.91
3826 4189 3.631686 TCACCAACAAAACCTGACAGATG 59.368 43.478 3.32 0.30 0.00 2.90
3827 4190 3.897239 TCACCAACAAAACCTGACAGAT 58.103 40.909 3.32 0.00 0.00 2.90
3828 4191 3.358111 TCACCAACAAAACCTGACAGA 57.642 42.857 3.32 0.00 0.00 3.41
3829 4192 4.362279 CAATCACCAACAAAACCTGACAG 58.638 43.478 0.00 0.00 0.00 3.51
3830 4193 3.131933 CCAATCACCAACAAAACCTGACA 59.868 43.478 0.00 0.00 0.00 3.58
3831 4194 3.132111 ACCAATCACCAACAAAACCTGAC 59.868 43.478 0.00 0.00 0.00 3.51
3832 4195 3.370104 ACCAATCACCAACAAAACCTGA 58.630 40.909 0.00 0.00 0.00 3.86
3833 4196 3.817709 ACCAATCACCAACAAAACCTG 57.182 42.857 0.00 0.00 0.00 4.00
3834 4197 4.835284 AAACCAATCACCAACAAAACCT 57.165 36.364 0.00 0.00 0.00 3.50
3835 4198 5.888691 AAAAACCAATCACCAACAAAACC 57.111 34.783 0.00 0.00 0.00 3.27
3836 4199 7.835634 TCTAAAAACCAATCACCAACAAAAC 57.164 32.000 0.00 0.00 0.00 2.43
3837 4200 7.497249 CCATCTAAAAACCAATCACCAACAAAA 59.503 33.333 0.00 0.00 0.00 2.44
3838 4201 6.989169 CCATCTAAAAACCAATCACCAACAAA 59.011 34.615 0.00 0.00 0.00 2.83
3839 4202 6.325028 TCCATCTAAAAACCAATCACCAACAA 59.675 34.615 0.00 0.00 0.00 2.83
3883 4246 5.104318 AGGTTGCCCTTTTTATGGTGAAAAA 60.104 36.000 0.00 0.00 38.13 1.94
3884 4247 4.410555 AGGTTGCCCTTTTTATGGTGAAAA 59.589 37.500 0.00 0.00 38.13 2.29
3885 4248 3.970640 AGGTTGCCCTTTTTATGGTGAAA 59.029 39.130 0.00 0.00 38.13 2.69
3886 4249 3.323403 CAGGTTGCCCTTTTTATGGTGAA 59.677 43.478 0.00 0.00 39.89 3.18
3887 4250 2.896685 CAGGTTGCCCTTTTTATGGTGA 59.103 45.455 0.00 0.00 39.89 4.02
3888 4251 2.028203 CCAGGTTGCCCTTTTTATGGTG 60.028 50.000 0.00 0.00 39.89 4.17
3889 4252 2.256306 CCAGGTTGCCCTTTTTATGGT 58.744 47.619 0.00 0.00 39.89 3.55
3890 4253 2.028203 CACCAGGTTGCCCTTTTTATGG 60.028 50.000 0.00 0.00 39.89 2.74
3891 4254 2.612721 GCACCAGGTTGCCCTTTTTATG 60.613 50.000 0.00 0.00 39.89 1.90
3892 4255 1.623311 GCACCAGGTTGCCCTTTTTAT 59.377 47.619 0.00 0.00 39.89 1.40
3893 4256 1.044611 GCACCAGGTTGCCCTTTTTA 58.955 50.000 0.00 0.00 39.89 1.52
3894 4257 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3895 4258 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3896 4259 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3897 4260 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3898 4261 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3899 4262 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3900 4263 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3901 4264 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3902 4265 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3903 4266 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3928 4291 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3929 4292 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3930 4293 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3931 4294 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3932 4295 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3933 4296 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3934 4297 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3935 4298 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3936 4299 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3937 4300 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3938 4301 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3939 4302 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3940 4303 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3941 4304 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3942 4305 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3943 4306 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3944 4307 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3945 4308 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3946 4309 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3947 4310 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3952 4315 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3953 4316 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3954 4317 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3955 4318 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3956 4319 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3957 4320 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3958 4321 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3959 4322 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3960 4323 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3961 4324 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3962 4325 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3963 4326 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3964 4327 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3965 4328 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3966 4329 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3967 4330 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3968 4331 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3969 4332 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3970 4333 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3971 4334 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3972 4335 1.463674 AAATGTAGGGAAAGGCTGCG 58.536 50.000 0.00 0.00 0.00 5.18
3973 4336 3.006859 ACAAAAATGTAGGGAAAGGCTGC 59.993 43.478 0.00 0.00 0.00 5.25
3974 4337 4.280677 TGACAAAAATGTAGGGAAAGGCTG 59.719 41.667 0.00 0.00 0.00 4.85
3975 4338 4.280929 GTGACAAAAATGTAGGGAAAGGCT 59.719 41.667 0.00 0.00 0.00 4.58
3976 4339 4.556233 GTGACAAAAATGTAGGGAAAGGC 58.444 43.478 0.00 0.00 0.00 4.35
3977 4340 4.586841 TGGTGACAAAAATGTAGGGAAAGG 59.413 41.667 0.00 0.00 37.44 3.11
3978 4341 5.782893 TGGTGACAAAAATGTAGGGAAAG 57.217 39.130 0.00 0.00 37.44 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.