Multiple sequence alignment - TraesCS3B01G329900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G329900 chr3B 100.000 9710 0 0 1 9710 533030503 533020794 0.000000e+00 17932.0
1 TraesCS3B01G329900 chr3B 97.262 986 22 4 4967 5951 116155038 116156019 0.000000e+00 1666.0
2 TraesCS3B01G329900 chr3B 84.274 248 39 0 9067 9314 563938893 563938646 9.740000e-60 243.0
3 TraesCS3B01G329900 chr3B 78.295 387 62 16 37 413 188442226 188441852 7.590000e-56 230.0
4 TraesCS3B01G329900 chr3B 97.938 97 1 1 2387 2483 533028025 533027930 6.030000e-37 167.0
5 TraesCS3B01G329900 chr3B 97.938 97 1 1 2479 2574 533028117 533028021 6.030000e-37 167.0
6 TraesCS3B01G329900 chr3B 79.381 194 21 9 9304 9494 799795492 799795315 1.710000e-22 119.0
7 TraesCS3B01G329900 chr3B 78.322 143 26 4 3861 4001 346609706 346609845 4.830000e-13 87.9
8 TraesCS3B01G329900 chr3B 90.000 60 3 2 694 753 822111506 822111562 3.760000e-09 75.0
9 TraesCS3B01G329900 chr3B 73.684 190 37 8 3302 3489 487670578 487670400 2.930000e-05 62.1
10 TraesCS3B01G329900 chr3D 95.210 4280 117 31 711 4969 407394830 407390618 0.000000e+00 6687.0
11 TraesCS3B01G329900 chr3D 95.833 3552 117 20 5953 9494 407390633 407387103 0.000000e+00 5710.0
12 TraesCS3B01G329900 chr3D 85.323 402 47 8 37 431 428605605 428606001 1.170000e-108 405.0
13 TraesCS3B01G329900 chr3D 89.933 298 26 4 2643 2938 554692001 554692296 1.980000e-101 381.0
14 TraesCS3B01G329900 chr3D 94.048 252 12 3 432 681 407396578 407396328 7.120000e-101 379.0
15 TraesCS3B01G329900 chr3D 89.349 169 14 2 8850 9015 456522909 456522742 9.880000e-50 209.0
16 TraesCS3B01G329900 chr3D 98.925 93 1 0 2482 2574 407393194 407393102 6.030000e-37 167.0
17 TraesCS3B01G329900 chr3D 95.876 97 3 1 2387 2483 407393106 407393011 1.310000e-33 156.0
18 TraesCS3B01G329900 chr3D 83.740 123 15 2 9588 9710 407383456 407383339 2.870000e-20 111.0
19 TraesCS3B01G329900 chr3D 97.436 39 1 0 3672 3710 407391954 407391916 6.290000e-07 67.6
20 TraesCS3B01G329900 chr3D 100.000 31 0 0 3459 3489 373939786 373939756 3.790000e-04 58.4
21 TraesCS3B01G329900 chr3A 95.102 3103 90 25 5953 9033 544382878 544385940 0.000000e+00 4831.0
22 TraesCS3B01G329900 chr3A 97.549 2326 44 6 2387 4710 544379819 544382133 0.000000e+00 3967.0
23 TraesCS3B01G329900 chr3A 94.053 1816 61 18 780 2574 544378125 544379914 0.000000e+00 2712.0
24 TraesCS3B01G329900 chr3A 96.654 269 1 2 4708 4969 544382626 544382893 3.220000e-119 440.0
25 TraesCS3B01G329900 chr3A 85.891 404 51 5 37 436 716129725 716130126 9.010000e-115 425.0
26 TraesCS3B01G329900 chr3A 94.694 245 13 0 432 676 544375591 544375835 1.980000e-101 381.0
27 TraesCS3B01G329900 chr3A 100.000 93 0 0 2482 2574 544379731 544379823 1.300000e-38 172.0
28 TraesCS3B01G329900 chr3A 97.938 97 1 1 2387 2483 544379910 544380005 6.030000e-37 167.0
29 TraesCS3B01G329900 chr3A 77.622 143 27 4 3861 4001 269649076 269649215 2.250000e-11 82.4
30 TraesCS3B01G329900 chr6B 98.071 985 17 2 4967 5950 478476622 478477605 0.000000e+00 1712.0
31 TraesCS3B01G329900 chr6B 97.674 989 20 3 4967 5953 47223706 47222719 0.000000e+00 1696.0
32 TraesCS3B01G329900 chr6B 76.243 181 28 10 3407 3580 195808247 195808419 2.250000e-11 82.4
33 TraesCS3B01G329900 chr5A 97.773 988 20 2 4967 5953 35738337 35739323 0.000000e+00 1701.0
34 TraesCS3B01G329900 chr5A 91.525 59 2 2 694 752 670441619 670441564 2.910000e-10 78.7
35 TraesCS3B01G329900 chr5A 83.117 77 13 0 3443 3519 571775045 571775121 4.870000e-08 71.3
36 TraesCS3B01G329900 chr1B 97.563 985 20 2 4967 5950 676206689 676207670 0.000000e+00 1683.0
37 TraesCS3B01G329900 chr1B 97.368 988 23 2 4967 5953 52692712 52691727 0.000000e+00 1677.0
38 TraesCS3B01G329900 chr1B 78.663 703 93 33 7314 7971 9842933 9843623 1.950000e-111 414.0
39 TraesCS3B01G329900 chr1B 83.495 412 47 13 36 430 613950593 613950186 1.990000e-96 364.0
40 TraesCS3B01G329900 chr1B 88.966 290 30 2 2650 2938 9839579 9839867 3.330000e-94 357.0
41 TraesCS3B01G329900 chr1B 86.008 243 34 0 9068 9310 2770496 2770254 2.690000e-65 261.0
42 TraesCS3B01G329900 chr1B 91.534 189 16 0 3034 3222 9839983 9840171 2.690000e-65 261.0
43 TraesCS3B01G329900 chr1B 91.525 59 2 2 694 752 72706790 72706735 2.910000e-10 78.7
44 TraesCS3B01G329900 chr1B 91.525 59 2 2 694 752 72766843 72766788 2.910000e-10 78.7
45 TraesCS3B01G329900 chr7B 97.462 985 24 1 4967 5950 672785832 672784848 0.000000e+00 1679.0
46 TraesCS3B01G329900 chr7B 84.328 402 47 9 37 431 716313894 716314286 7.120000e-101 379.0
47 TraesCS3B01G329900 chr7B 75.298 672 69 33 2596 3230 613148256 613147645 2.110000e-56 231.0
48 TraesCS3B01G329900 chr4B 97.465 986 22 3 4967 5950 186603827 186604811 0.000000e+00 1679.0
49 TraesCS3B01G329900 chr4B 82.623 305 52 1 9040 9344 400360113 400360416 1.610000e-67 268.0
50 TraesCS3B01G329900 chr4B 86.264 182 18 5 8840 9015 168181655 168181475 3.580000e-44 191.0
51 TraesCS3B01G329900 chr4B 91.525 59 2 2 694 752 535345103 535345158 2.910000e-10 78.7
52 TraesCS3B01G329900 chr5D 96.979 993 27 3 4967 5956 450524537 450523545 0.000000e+00 1664.0
53 TraesCS3B01G329900 chr5D 90.940 298 23 4 2643 2938 505025470 505025175 1.960000e-106 398.0
54 TraesCS3B01G329900 chr5D 90.604 298 24 4 2643 2938 505010850 505010555 9.140000e-105 392.0
55 TraesCS3B01G329900 chr5D 92.308 52 4 0 3871 3922 40959272 40959221 3.760000e-09 75.0
56 TraesCS3B01G329900 chr2D 79.542 699 66 23 2643 3315 481561200 481560553 2.510000e-115 427.0
57 TraesCS3B01G329900 chr2D 89.933 298 26 4 2643 2938 27629309 27629604 1.980000e-101 381.0
58 TraesCS3B01G329900 chr2D 85.484 248 36 0 9067 9314 444861055 444860808 9.670000e-65 259.0
59 TraesCS3B01G329900 chr7D 90.940 298 23 4 2643 2938 548342827 548342532 1.960000e-106 398.0
60 TraesCS3B01G329900 chr7D 90.604 298 24 4 2643 2938 577379239 577378944 9.140000e-105 392.0
61 TraesCS3B01G329900 chr7D 84.574 376 53 5 62 432 596326621 596326246 1.540000e-97 368.0
62 TraesCS3B01G329900 chr7D 83.871 403 44 11 39 433 607049265 607048876 1.990000e-96 364.0
63 TraesCS3B01G329900 chr7D 83.292 407 37 13 37 431 596011494 596011107 7.220000e-91 346.0
64 TraesCS3B01G329900 chr7D 85.652 230 33 0 9085 9314 107200064 107199835 9.740000e-60 243.0
65 TraesCS3B01G329900 chr7D 94.949 99 3 2 3998 4094 88188528 88188430 4.700000e-33 154.0
66 TraesCS3B01G329900 chr7D 75.641 156 28 5 3424 3578 185126884 185127030 1.750000e-07 69.4
67 TraesCS3B01G329900 chr1D 78.336 697 94 32 7317 7970 7474211 7473529 1.960000e-106 398.0
68 TraesCS3B01G329900 chr1D 78.593 654 82 30 7360 7971 7412719 7412082 7.120000e-101 379.0
69 TraesCS3B01G329900 chr1D 90.672 268 24 1 6041 6307 7475693 7475426 1.200000e-93 355.0
70 TraesCS3B01G329900 chr1D 90.816 196 18 0 3027 3222 7477096 7476901 7.480000e-66 263.0
71 TraesCS3B01G329900 chr1D 85.774 239 34 0 9068 9306 276793779 276793541 4.500000e-63 254.0
72 TraesCS3B01G329900 chr1D 91.667 60 1 3 693 752 433918397 433918342 8.080000e-11 80.5
73 TraesCS3B01G329900 chr6D 85.075 402 44 10 36 431 28655175 28655566 7.070000e-106 396.0
74 TraesCS3B01G329900 chr6D 85.567 388 44 10 52 431 163327912 163328295 7.070000e-106 396.0
75 TraesCS3B01G329900 chr5B 84.406 404 49 7 36 428 470432754 470432354 1.530000e-102 385.0
76 TraesCS3B01G329900 chr5B 86.522 230 29 2 3088 3315 462745110 462745339 1.620000e-62 252.0
77 TraesCS3B01G329900 chr5B 84.674 261 22 13 2594 2840 462744663 462744919 2.710000e-60 244.0
78 TraesCS3B01G329900 chr5B 81.250 208 33 6 9500 9704 7313504 7313708 7.800000e-36 163.0
79 TraesCS3B01G329900 chr5B 87.500 64 8 0 9303 9366 9498800 9498737 3.760000e-09 75.0
80 TraesCS3B01G329900 chr4D 84.198 405 54 7 36 431 298111916 298111513 1.530000e-102 385.0
81 TraesCS3B01G329900 chr4D 86.842 228 27 3 9081 9306 349276078 349276304 1.620000e-62 252.0
82 TraesCS3B01G329900 chr4D 83.516 182 22 4 8838 9013 508338902 508339081 7.800000e-36 163.0
83 TraesCS3B01G329900 chr1A 77.778 693 102 34 7317 7971 9106490 9105812 7.120000e-101 379.0
84 TraesCS3B01G329900 chr1A 93.548 186 12 0 3037 3222 9109495 9109310 2.670000e-70 278.0
85 TraesCS3B01G329900 chr2A 83.614 415 51 12 26 431 703283990 703284396 3.310000e-99 374.0
86 TraesCS3B01G329900 chr2A 86.207 261 20 13 2594 2841 509369562 509369305 1.610000e-67 268.0
87 TraesCS3B01G329900 chr2A 87.383 214 25 2 3088 3299 509369113 509368900 2.710000e-60 244.0
88 TraesCS3B01G329900 chr2A 85.246 122 18 0 8839 8960 685750687 685750566 1.020000e-24 126.0
89 TraesCS3B01G329900 chrUn 86.859 312 29 8 126 431 127033494 127033799 1.210000e-88 339.0
90 TraesCS3B01G329900 chr7A 86.400 250 32 2 9066 9314 383096236 383095988 1.240000e-68 272.0
91 TraesCS3B01G329900 chr7A 91.525 59 2 2 694 752 294590345 294590290 2.910000e-10 78.7
92 TraesCS3B01G329900 chr4A 86.100 259 20 13 2594 2839 435432587 435432842 2.080000e-66 265.0
93 TraesCS3B01G329900 chr4A 86.634 202 25 2 3088 3287 435433036 435433237 1.270000e-53 222.0
94 TraesCS3B01G329900 chr4A 91.667 60 2 2 693 752 691291776 691291832 8.080000e-11 80.5
95 TraesCS3B01G329900 chr2B 80.328 183 35 1 9303 9485 679037191 679037010 4.730000e-28 137.0
96 TraesCS3B01G329900 chr2B 81.250 160 25 4 8855 9014 647706221 647706067 3.680000e-24 124.0
97 TraesCS3B01G329900 chr6A 80.000 115 21 2 3858 3971 577687309 577687422 6.250000e-12 84.2
98 TraesCS3B01G329900 chr6A 79.310 116 20 4 3858 3971 577476095 577476208 2.910000e-10 78.7
99 TraesCS3B01G329900 chr6A 79.130 115 22 2 3858 3971 577659018 577659131 2.910000e-10 78.7
100 TraesCS3B01G329900 chr6A 79.130 115 22 2 3858 3971 577704872 577704985 2.910000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G329900 chr3B 533020794 533030503 9709 True 6088.666667 17932 98.625333 1 9710 3 chr3B.!!$R5 9709
1 TraesCS3B01G329900 chr3B 116155038 116156019 981 False 1666.000000 1666 97.262000 4967 5951 1 chr3B.!!$F1 984
2 TraesCS3B01G329900 chr3D 407383339 407396578 13239 True 1896.800000 6687 94.438286 432 9710 7 chr3D.!!$R3 9278
3 TraesCS3B01G329900 chr3A 544375591 544385940 10349 False 1810.000000 4831 96.570000 432 9033 7 chr3A.!!$F3 8601
4 TraesCS3B01G329900 chr6B 478476622 478477605 983 False 1712.000000 1712 98.071000 4967 5950 1 chr6B.!!$F2 983
5 TraesCS3B01G329900 chr6B 47222719 47223706 987 True 1696.000000 1696 97.674000 4967 5953 1 chr6B.!!$R1 986
6 TraesCS3B01G329900 chr5A 35738337 35739323 986 False 1701.000000 1701 97.773000 4967 5953 1 chr5A.!!$F1 986
7 TraesCS3B01G329900 chr1B 676206689 676207670 981 False 1683.000000 1683 97.563000 4967 5950 1 chr1B.!!$F1 983
8 TraesCS3B01G329900 chr1B 52691727 52692712 985 True 1677.000000 1677 97.368000 4967 5953 1 chr1B.!!$R2 986
9 TraesCS3B01G329900 chr1B 9839579 9843623 4044 False 344.000000 414 86.387667 2650 7971 3 chr1B.!!$F2 5321
10 TraesCS3B01G329900 chr7B 672784848 672785832 984 True 1679.000000 1679 97.462000 4967 5950 1 chr7B.!!$R2 983
11 TraesCS3B01G329900 chr7B 613147645 613148256 611 True 231.000000 231 75.298000 2596 3230 1 chr7B.!!$R1 634
12 TraesCS3B01G329900 chr4B 186603827 186604811 984 False 1679.000000 1679 97.465000 4967 5950 1 chr4B.!!$F1 983
13 TraesCS3B01G329900 chr5D 450523545 450524537 992 True 1664.000000 1664 96.979000 4967 5956 1 chr5D.!!$R2 989
14 TraesCS3B01G329900 chr2D 481560553 481561200 647 True 427.000000 427 79.542000 2643 3315 1 chr2D.!!$R2 672
15 TraesCS3B01G329900 chr1D 7412082 7412719 637 True 379.000000 379 78.593000 7360 7971 1 chr1D.!!$R1 611
16 TraesCS3B01G329900 chr1D 7473529 7477096 3567 True 338.666667 398 86.608000 3027 7970 3 chr1D.!!$R4 4943
17 TraesCS3B01G329900 chr5B 462744663 462745339 676 False 248.000000 252 85.598000 2594 3315 2 chr5B.!!$F2 721
18 TraesCS3B01G329900 chr1A 9105812 9109495 3683 True 328.500000 379 85.663000 3037 7971 2 chr1A.!!$R1 4934
19 TraesCS3B01G329900 chr2A 509368900 509369562 662 True 256.000000 268 86.795000 2594 3299 2 chr2A.!!$R2 705
20 TraesCS3B01G329900 chr4A 435432587 435433237 650 False 243.500000 265 86.367000 2594 3287 2 chr4A.!!$F2 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.034198 TTTGGAGCGGACATCACGAA 59.966 50.000 0.00 0.0 0.00 3.85 F
1229 3595 0.113190 TGACTGCCTCTGTCTCCTGA 59.887 55.000 5.65 0.0 34.25 3.86 F
1827 4215 0.176910 TGACACGACACAGCAAGGAA 59.823 50.000 0.00 0.0 0.00 3.36 F
3534 6087 0.034960 TCTCTCCTCTCTGTCCACGG 60.035 60.000 0.00 0.0 0.00 4.94 F
3535 6088 1.662438 CTCTCCTCTCTGTCCACGGC 61.662 65.000 0.00 0.0 0.00 5.68 F
3539 6092 1.979155 CTCTCTGTCCACGGCTCCA 60.979 63.158 0.00 0.0 0.00 3.86 F
5243 8533 2.436646 CTGATGGCGGCGGTTCTT 60.437 61.111 9.78 0.0 0.00 2.52 F
6894 10530 1.443407 CGGAATCTGACCTCGGCAT 59.557 57.895 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 3890 0.097674 GCTCGTAGCAGCACCAAATG 59.902 55.000 0.00 0.0 41.89 2.32 R
2204 4593 3.526534 GAGGACACAGCTAACCTCATTC 58.473 50.000 17.11 0.0 45.53 2.67 R
3598 6151 0.320771 ACAAGTAGCAGCTTCCACCG 60.321 55.000 0.00 0.0 0.00 4.94 R
4965 8253 1.216990 GAGATCCCAACCCCACATCT 58.783 55.000 0.00 0.0 0.00 2.90 R
5243 8533 2.753452 TGGCAAAACGACACCACTAAAA 59.247 40.909 0.00 0.0 0.00 1.52 R
5956 9247 8.257306 GCATGAAAAATAAAAATCTACCCTCCA 58.743 33.333 0.00 0.0 0.00 3.86 R
7211 11122 0.589708 GTCAAACACAGCGTTACCCC 59.410 55.000 0.00 0.0 36.59 4.95 R
9280 13293 0.822164 CTCCGTCCTGGTTTATCGGT 59.178 55.000 0.00 0.0 41.58 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.869774 GCGATCTGACATGCCATACA 58.130 50.000 0.00 0.00 0.00 2.29
20 21 2.212652 GCGATCTGACATGCCATACAA 58.787 47.619 0.00 0.00 0.00 2.41
21 22 2.613595 GCGATCTGACATGCCATACAAA 59.386 45.455 0.00 0.00 0.00 2.83
22 23 3.065233 GCGATCTGACATGCCATACAAAA 59.935 43.478 0.00 0.00 0.00 2.44
23 24 4.787563 GCGATCTGACATGCCATACAAAAG 60.788 45.833 0.00 0.00 0.00 2.27
24 25 4.260907 CGATCTGACATGCCATACAAAAGG 60.261 45.833 0.00 0.00 0.00 3.11
36 37 5.783111 CCATACAAAAGGCTATTTATGGGC 58.217 41.667 13.66 0.00 30.09 5.36
37 38 5.460646 CATACAAAAGGCTATTTATGGGCG 58.539 41.667 0.00 0.00 38.86 6.13
38 39 3.626930 ACAAAAGGCTATTTATGGGCGA 58.373 40.909 0.00 0.00 38.86 5.54
39 40 4.020543 ACAAAAGGCTATTTATGGGCGAA 58.979 39.130 0.00 0.00 38.86 4.70
40 41 4.649218 ACAAAAGGCTATTTATGGGCGAAT 59.351 37.500 0.00 0.00 38.86 3.34
41 42 5.830991 ACAAAAGGCTATTTATGGGCGAATA 59.169 36.000 0.00 0.00 38.86 1.75
42 43 6.493458 ACAAAAGGCTATTTATGGGCGAATAT 59.507 34.615 0.00 0.00 38.86 1.28
43 44 6.759497 AAAGGCTATTTATGGGCGAATATC 57.241 37.500 0.00 0.00 38.86 1.63
44 45 4.781934 AGGCTATTTATGGGCGAATATCC 58.218 43.478 0.00 0.00 38.86 2.59
45 46 4.227300 AGGCTATTTATGGGCGAATATCCA 59.773 41.667 0.00 0.00 38.86 3.41
46 47 4.947388 GGCTATTTATGGGCGAATATCCAA 59.053 41.667 0.00 0.00 36.54 3.53
47 48 5.594317 GGCTATTTATGGGCGAATATCCAAT 59.406 40.000 0.00 0.00 36.54 3.16
48 49 6.096846 GGCTATTTATGGGCGAATATCCAATT 59.903 38.462 0.00 0.00 36.54 2.32
49 50 7.284489 GGCTATTTATGGGCGAATATCCAATTA 59.716 37.037 0.00 0.00 36.54 1.40
50 51 8.850156 GCTATTTATGGGCGAATATCCAATTAT 58.150 33.333 0.00 0.00 36.54 1.28
52 53 8.821686 ATTTATGGGCGAATATCCAATTATGA 57.178 30.769 0.00 0.00 36.54 2.15
53 54 7.864108 TTATGGGCGAATATCCAATTATGAG 57.136 36.000 0.00 0.00 36.54 2.90
54 55 4.009675 TGGGCGAATATCCAATTATGAGC 58.990 43.478 0.00 0.00 0.00 4.26
55 56 3.378427 GGGCGAATATCCAATTATGAGCC 59.622 47.826 0.00 0.00 35.70 4.70
56 57 3.378427 GGCGAATATCCAATTATGAGCCC 59.622 47.826 0.00 0.00 32.85 5.19
57 58 3.063997 GCGAATATCCAATTATGAGCCCG 59.936 47.826 0.00 0.00 0.00 6.13
58 59 3.623060 CGAATATCCAATTATGAGCCCGG 59.377 47.826 0.00 0.00 0.00 5.73
59 60 3.652057 ATATCCAATTATGAGCCCGGG 57.348 47.619 19.09 19.09 0.00 5.73
60 61 0.251341 ATCCAATTATGAGCCCGGGC 60.251 55.000 39.29 39.29 42.33 6.13
70 71 4.496336 GCCCGGGCTCATCTGCTT 62.496 66.667 38.76 0.00 38.26 3.91
71 72 2.203126 CCCGGGCTCATCTGCTTC 60.203 66.667 8.08 0.00 0.00 3.86
72 73 2.203126 CCGGGCTCATCTGCTTCC 60.203 66.667 0.00 0.00 0.00 3.46
73 74 2.587194 CGGGCTCATCTGCTTCCG 60.587 66.667 0.00 0.00 33.14 4.30
74 75 2.203126 GGGCTCATCTGCTTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
75 76 2.586792 GGCTCATCTGCTTCCGGT 59.413 61.111 0.00 0.00 0.00 5.28
76 77 1.522580 GGCTCATCTGCTTCCGGTC 60.523 63.158 0.00 0.00 0.00 4.79
77 78 1.219124 GCTCATCTGCTTCCGGTCA 59.781 57.895 0.00 0.00 0.00 4.02
78 79 0.391661 GCTCATCTGCTTCCGGTCAA 60.392 55.000 0.00 0.00 0.00 3.18
79 80 1.649664 CTCATCTGCTTCCGGTCAAG 58.350 55.000 0.00 0.00 0.00 3.02
80 81 1.205655 CTCATCTGCTTCCGGTCAAGA 59.794 52.381 7.07 4.48 0.00 3.02
81 82 1.623311 TCATCTGCTTCCGGTCAAGAA 59.377 47.619 7.07 0.00 0.00 2.52
82 83 2.038426 TCATCTGCTTCCGGTCAAGAAA 59.962 45.455 7.07 0.00 0.00 2.52
83 84 1.878953 TCTGCTTCCGGTCAAGAAAC 58.121 50.000 7.07 0.00 0.00 2.78
84 85 1.140052 TCTGCTTCCGGTCAAGAAACA 59.860 47.619 7.07 0.00 0.00 2.83
85 86 1.946768 CTGCTTCCGGTCAAGAAACAA 59.053 47.619 7.07 0.00 0.00 2.83
86 87 2.554032 CTGCTTCCGGTCAAGAAACAAT 59.446 45.455 7.07 0.00 0.00 2.71
87 88 2.955660 TGCTTCCGGTCAAGAAACAATT 59.044 40.909 7.07 0.00 0.00 2.32
88 89 3.004315 TGCTTCCGGTCAAGAAACAATTC 59.996 43.478 7.07 0.00 35.70 2.17
89 90 3.004315 GCTTCCGGTCAAGAAACAATTCA 59.996 43.478 7.07 0.00 38.06 2.57
90 91 4.321230 GCTTCCGGTCAAGAAACAATTCAT 60.321 41.667 7.07 0.00 38.06 2.57
91 92 5.106317 GCTTCCGGTCAAGAAACAATTCATA 60.106 40.000 7.07 0.00 38.06 2.15
92 93 6.569610 GCTTCCGGTCAAGAAACAATTCATAA 60.570 38.462 7.07 0.00 38.06 1.90
93 94 6.885952 TCCGGTCAAGAAACAATTCATAAA 57.114 33.333 0.00 0.00 38.06 1.40
94 95 7.278461 TCCGGTCAAGAAACAATTCATAAAA 57.722 32.000 0.00 0.00 38.06 1.52
95 96 7.717568 TCCGGTCAAGAAACAATTCATAAAAA 58.282 30.769 0.00 0.00 38.06 1.94
140 141 7.534085 TGTCTAAGTTAGATAATTTGGTGCG 57.466 36.000 15.53 0.00 37.13 5.34
141 142 7.101054 TGTCTAAGTTAGATAATTTGGTGCGT 58.899 34.615 15.53 0.00 37.13 5.24
142 143 7.064134 TGTCTAAGTTAGATAATTTGGTGCGTG 59.936 37.037 15.53 0.00 37.13 5.34
143 144 7.277098 GTCTAAGTTAGATAATTTGGTGCGTGA 59.723 37.037 15.53 0.00 37.13 4.35
144 145 6.422776 AAGTTAGATAATTTGGTGCGTGAG 57.577 37.500 0.00 0.00 0.00 3.51
145 146 4.876107 AGTTAGATAATTTGGTGCGTGAGG 59.124 41.667 0.00 0.00 0.00 3.86
146 147 3.350219 AGATAATTTGGTGCGTGAGGT 57.650 42.857 0.00 0.00 0.00 3.85
147 148 3.009723 AGATAATTTGGTGCGTGAGGTG 58.990 45.455 0.00 0.00 0.00 4.00
148 149 0.878416 TAATTTGGTGCGTGAGGTGC 59.122 50.000 0.00 0.00 0.00 5.01
149 150 2.128853 AATTTGGTGCGTGAGGTGCG 62.129 55.000 0.00 0.00 34.24 5.34
156 157 2.664851 CGTGAGGTGCGCTCCAAA 60.665 61.111 28.68 14.40 0.00 3.28
157 158 2.034879 CGTGAGGTGCGCTCCAAAT 61.035 57.895 28.68 9.86 0.00 2.32
158 159 1.577328 CGTGAGGTGCGCTCCAAATT 61.577 55.000 28.68 9.48 0.00 1.82
159 160 0.598065 GTGAGGTGCGCTCCAAATTT 59.402 50.000 28.68 9.09 0.00 1.82
160 161 1.000274 GTGAGGTGCGCTCCAAATTTT 60.000 47.619 28.68 8.32 0.00 1.82
161 162 2.227865 GTGAGGTGCGCTCCAAATTTTA 59.772 45.455 28.68 3.26 0.00 1.52
162 163 2.487762 TGAGGTGCGCTCCAAATTTTAG 59.512 45.455 28.68 0.00 0.00 1.85
163 164 2.747446 GAGGTGCGCTCCAAATTTTAGA 59.253 45.455 28.68 0.00 0.00 2.10
164 165 2.749621 AGGTGCGCTCCAAATTTTAGAG 59.250 45.455 28.68 9.67 0.00 2.43
186 187 8.986929 AGAGCATTTGGATATTTAAGTAGCTT 57.013 30.769 0.00 0.00 0.00 3.74
187 188 9.413734 AGAGCATTTGGATATTTAAGTAGCTTT 57.586 29.630 0.00 0.00 0.00 3.51
188 189 9.670719 GAGCATTTGGATATTTAAGTAGCTTTC 57.329 33.333 0.00 0.00 0.00 2.62
189 190 9.189156 AGCATTTGGATATTTAAGTAGCTTTCA 57.811 29.630 0.00 0.00 0.00 2.69
190 191 9.455847 GCATTTGGATATTTAAGTAGCTTTCAG 57.544 33.333 0.00 0.00 0.00 3.02
191 192 9.455847 CATTTGGATATTTAAGTAGCTTTCAGC 57.544 33.333 0.00 0.00 42.84 4.26
192 193 8.574251 TTTGGATATTTAAGTAGCTTTCAGCA 57.426 30.769 0.00 0.00 45.56 4.41
193 194 8.574251 TTGGATATTTAAGTAGCTTTCAGCAA 57.426 30.769 0.00 0.00 45.56 3.91
194 195 8.574251 TGGATATTTAAGTAGCTTTCAGCAAA 57.426 30.769 0.00 0.00 45.56 3.68
195 196 9.019656 TGGATATTTAAGTAGCTTTCAGCAAAA 57.980 29.630 0.00 0.00 45.56 2.44
196 197 9.855021 GGATATTTAAGTAGCTTTCAGCAAAAA 57.145 29.630 0.00 0.00 45.56 1.94
222 223 9.905713 AAGACAAATTAGGTCAAAGCTATATGA 57.094 29.630 11.45 0.00 37.74 2.15
223 224 9.905713 AGACAAATTAGGTCAAAGCTATATGAA 57.094 29.630 11.45 0.00 37.74 2.57
224 225 9.937175 GACAAATTAGGTCAAAGCTATATGAAC 57.063 33.333 4.42 4.42 35.36 3.18
225 226 9.461312 ACAAATTAGGTCAAAGCTATATGAACA 57.539 29.630 12.88 0.00 35.69 3.18
231 232 8.438676 AGGTCAAAGCTATATGAACAATACAC 57.561 34.615 12.88 0.00 35.69 2.90
232 233 8.267894 AGGTCAAAGCTATATGAACAATACACT 58.732 33.333 12.88 0.00 35.69 3.55
233 234 8.893727 GGTCAAAGCTATATGAACAATACACTT 58.106 33.333 7.13 0.00 33.42 3.16
246 247 9.997482 TGAACAATACACTTTTTAACAGAACTC 57.003 29.630 0.00 0.00 0.00 3.01
247 248 9.997482 GAACAATACACTTTTTAACAGAACTCA 57.003 29.630 0.00 0.00 0.00 3.41
254 255 9.705290 ACACTTTTTAACAGAACTCAAATTTGT 57.295 25.926 17.47 0.00 0.00 2.83
263 264 8.579682 ACAGAACTCAAATTTGTCTTATTTGC 57.420 30.769 17.47 0.57 40.88 3.68
264 265 7.653311 ACAGAACTCAAATTTGTCTTATTTGCC 59.347 33.333 17.47 0.00 40.88 4.52
265 266 6.863126 AGAACTCAAATTTGTCTTATTTGCCG 59.137 34.615 17.47 0.00 40.88 5.69
266 267 6.325919 ACTCAAATTTGTCTTATTTGCCGA 57.674 33.333 17.47 0.00 40.88 5.54
267 268 6.381801 ACTCAAATTTGTCTTATTTGCCGAG 58.618 36.000 17.47 5.74 40.88 4.63
268 269 6.206634 ACTCAAATTTGTCTTATTTGCCGAGA 59.793 34.615 17.47 0.00 40.88 4.04
269 270 6.611381 TCAAATTTGTCTTATTTGCCGAGAG 58.389 36.000 17.47 0.00 40.88 3.20
270 271 4.622701 ATTTGTCTTATTTGCCGAGAGC 57.377 40.909 0.00 0.00 44.14 4.09
271 272 3.334583 TTGTCTTATTTGCCGAGAGCT 57.665 42.857 0.00 0.00 44.23 4.09
272 273 4.465632 TTGTCTTATTTGCCGAGAGCTA 57.534 40.909 0.00 0.00 44.23 3.32
273 274 3.782046 TGTCTTATTTGCCGAGAGCTAC 58.218 45.455 0.00 0.00 44.23 3.58
274 275 3.447586 TGTCTTATTTGCCGAGAGCTACT 59.552 43.478 0.00 0.00 44.23 2.57
275 276 4.045783 GTCTTATTTGCCGAGAGCTACTC 58.954 47.826 0.00 0.00 44.23 2.59
276 277 3.699538 TCTTATTTGCCGAGAGCTACTCA 59.300 43.478 11.93 0.00 45.14 3.41
277 278 4.159693 TCTTATTTGCCGAGAGCTACTCAA 59.840 41.667 11.93 3.64 45.14 3.02
278 279 2.831685 TTTGCCGAGAGCTACTCAAA 57.168 45.000 11.93 8.05 45.14 2.69
279 280 3.334583 TTTGCCGAGAGCTACTCAAAT 57.665 42.857 11.93 0.00 45.14 2.32
280 281 2.299993 TGCCGAGAGCTACTCAAATG 57.700 50.000 11.93 1.60 45.14 2.32
281 282 1.550524 TGCCGAGAGCTACTCAAATGT 59.449 47.619 11.93 0.00 45.14 2.71
282 283 2.197577 GCCGAGAGCTACTCAAATGTC 58.802 52.381 11.93 0.00 45.14 3.06
283 284 2.815478 CCGAGAGCTACTCAAATGTCC 58.185 52.381 11.93 0.00 45.14 4.02
284 285 2.166459 CCGAGAGCTACTCAAATGTCCA 59.834 50.000 11.93 0.00 45.14 4.02
285 286 3.368427 CCGAGAGCTACTCAAATGTCCAA 60.368 47.826 11.93 0.00 45.14 3.53
286 287 4.245660 CGAGAGCTACTCAAATGTCCAAA 58.754 43.478 11.93 0.00 45.14 3.28
287 288 4.872691 CGAGAGCTACTCAAATGTCCAAAT 59.127 41.667 11.93 0.00 45.14 2.32
288 289 6.042777 CGAGAGCTACTCAAATGTCCAAATA 58.957 40.000 11.93 0.00 45.14 1.40
289 290 6.535150 CGAGAGCTACTCAAATGTCCAAATAA 59.465 38.462 11.93 0.00 45.14 1.40
290 291 7.225538 CGAGAGCTACTCAAATGTCCAAATAAT 59.774 37.037 11.93 0.00 45.14 1.28
291 292 8.814038 AGAGCTACTCAAATGTCCAAATAATT 57.186 30.769 0.00 0.00 32.06 1.40
292 293 9.247861 AGAGCTACTCAAATGTCCAAATAATTT 57.752 29.630 0.00 0.00 32.06 1.82
293 294 9.294030 GAGCTACTCAAATGTCCAAATAATTTG 57.706 33.333 0.00 0.00 40.86 2.32
294 295 9.023962 AGCTACTCAAATGTCCAAATAATTTGA 57.976 29.630 9.09 9.09 44.11 2.69
295 296 9.638239 GCTACTCAAATGTCCAAATAATTTGAA 57.362 29.630 10.30 0.00 45.03 2.69
307 308 7.593875 CAAATAATTTGAAATTTGGAGCGGA 57.406 32.000 8.60 0.00 43.26 5.54
308 309 7.455447 CAAATAATTTGAAATTTGGAGCGGAC 58.545 34.615 8.60 0.00 43.26 4.79
309 310 4.599047 AATTTGAAATTTGGAGCGGACA 57.401 36.364 0.00 0.00 0.00 4.02
310 311 4.806640 ATTTGAAATTTGGAGCGGACAT 57.193 36.364 0.00 0.00 0.00 3.06
311 312 3.848272 TTGAAATTTGGAGCGGACATC 57.152 42.857 0.00 0.00 0.00 3.06
312 313 2.789213 TGAAATTTGGAGCGGACATCA 58.211 42.857 0.00 0.00 0.00 3.07
313 314 2.487762 TGAAATTTGGAGCGGACATCAC 59.512 45.455 0.00 0.00 0.00 3.06
314 315 1.086696 AATTTGGAGCGGACATCACG 58.913 50.000 0.00 0.00 0.00 4.35
315 316 0.249120 ATTTGGAGCGGACATCACGA 59.751 50.000 0.00 0.00 0.00 4.35
316 317 0.034198 TTTGGAGCGGACATCACGAA 59.966 50.000 0.00 0.00 0.00 3.85
317 318 0.669318 TTGGAGCGGACATCACGAAC 60.669 55.000 0.00 0.00 0.00 3.95
318 319 1.810030 GGAGCGGACATCACGAACC 60.810 63.158 0.00 0.00 0.00 3.62
319 320 1.080093 GAGCGGACATCACGAACCA 60.080 57.895 0.00 0.00 0.00 3.67
320 321 0.669318 GAGCGGACATCACGAACCAA 60.669 55.000 0.00 0.00 0.00 3.67
321 322 0.250124 AGCGGACATCACGAACCAAA 60.250 50.000 0.00 0.00 0.00 3.28
322 323 0.802494 GCGGACATCACGAACCAAAT 59.198 50.000 0.00 0.00 0.00 2.32
323 324 1.199097 GCGGACATCACGAACCAAATT 59.801 47.619 0.00 0.00 0.00 1.82
324 325 2.417239 GCGGACATCACGAACCAAATTA 59.583 45.455 0.00 0.00 0.00 1.40
325 326 3.064820 GCGGACATCACGAACCAAATTAT 59.935 43.478 0.00 0.00 0.00 1.28
326 327 4.785341 GCGGACATCACGAACCAAATTATC 60.785 45.833 0.00 0.00 0.00 1.75
327 328 4.570772 CGGACATCACGAACCAAATTATCT 59.429 41.667 0.00 0.00 0.00 1.98
328 329 5.751509 CGGACATCACGAACCAAATTATCTA 59.248 40.000 0.00 0.00 0.00 1.98
329 330 6.292168 CGGACATCACGAACCAAATTATCTAC 60.292 42.308 0.00 0.00 0.00 2.59
330 331 6.018180 GGACATCACGAACCAAATTATCTACC 60.018 42.308 0.00 0.00 0.00 3.18
331 332 6.411376 ACATCACGAACCAAATTATCTACCA 58.589 36.000 0.00 0.00 0.00 3.25
332 333 7.054124 ACATCACGAACCAAATTATCTACCAT 58.946 34.615 0.00 0.00 0.00 3.55
333 334 6.918892 TCACGAACCAAATTATCTACCATG 57.081 37.500 0.00 0.00 0.00 3.66
334 335 5.295787 TCACGAACCAAATTATCTACCATGC 59.704 40.000 0.00 0.00 0.00 4.06
335 336 4.578928 ACGAACCAAATTATCTACCATGCC 59.421 41.667 0.00 0.00 0.00 4.40
336 337 4.578516 CGAACCAAATTATCTACCATGCCA 59.421 41.667 0.00 0.00 0.00 4.92
337 338 5.067153 CGAACCAAATTATCTACCATGCCAA 59.933 40.000 0.00 0.00 0.00 4.52
338 339 6.405286 CGAACCAAATTATCTACCATGCCAAA 60.405 38.462 0.00 0.00 0.00 3.28
339 340 6.865834 ACCAAATTATCTACCATGCCAAAA 57.134 33.333 0.00 0.00 0.00 2.44
340 341 7.251321 ACCAAATTATCTACCATGCCAAAAA 57.749 32.000 0.00 0.00 0.00 1.94
409 410 4.479993 GCGGGTGCAGATGAGCCT 62.480 66.667 0.00 0.00 42.15 4.58
410 411 2.513204 CGGGTGCAGATGAGCCTG 60.513 66.667 0.00 0.00 37.23 4.85
411 412 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
412 413 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
413 414 2.673200 GGTGCAGATGAGCCTGGGA 61.673 63.158 0.00 0.00 34.82 4.37
414 415 1.153208 GTGCAGATGAGCCTGGGAG 60.153 63.158 0.00 0.00 34.82 4.30
415 416 2.203181 GCAGATGAGCCTGGGAGC 60.203 66.667 0.00 0.00 34.82 4.70
416 417 2.509916 CAGATGAGCCTGGGAGCC 59.490 66.667 0.00 0.00 0.00 4.70
417 418 2.041762 AGATGAGCCTGGGAGCCA 59.958 61.111 0.00 0.00 0.00 4.75
418 419 1.617536 AGATGAGCCTGGGAGCCAA 60.618 57.895 0.00 0.00 30.80 4.52
419 420 1.210204 AGATGAGCCTGGGAGCCAAA 61.210 55.000 0.00 0.00 30.80 3.28
420 421 0.323725 GATGAGCCTGGGAGCCAAAA 60.324 55.000 0.00 0.00 30.80 2.44
421 422 0.613012 ATGAGCCTGGGAGCCAAAAC 60.613 55.000 0.00 0.00 30.80 2.43
422 423 2.282462 AGCCTGGGAGCCAAAACG 60.282 61.111 0.00 0.00 30.80 3.60
423 424 4.056125 GCCTGGGAGCCAAAACGC 62.056 66.667 0.00 0.00 30.80 4.84
424 425 3.373565 CCTGGGAGCCAAAACGCC 61.374 66.667 0.00 0.00 30.80 5.68
425 426 2.282462 CTGGGAGCCAAAACGCCT 60.282 61.111 0.00 0.00 30.80 5.52
426 427 2.282180 TGGGAGCCAAAACGCCTC 60.282 61.111 0.00 0.00 0.00 4.70
427 428 2.282180 GGGAGCCAAAACGCCTCA 60.282 61.111 0.00 0.00 0.00 3.86
428 429 2.626780 GGGAGCCAAAACGCCTCAC 61.627 63.158 0.00 0.00 0.00 3.51
429 430 1.600916 GGAGCCAAAACGCCTCACT 60.601 57.895 0.00 0.00 0.00 3.41
430 431 1.578206 GGAGCCAAAACGCCTCACTC 61.578 60.000 0.00 0.00 0.00 3.51
556 557 4.388773 TCAACAAGACTTAATGTGCTAGCG 59.611 41.667 10.77 0.00 0.00 4.26
573 574 2.448736 GTGGATCCCTCCCTCCCC 60.449 72.222 9.90 0.00 41.29 4.81
605 606 1.136169 GTTTAATGTCGACGCCACACC 60.136 52.381 11.62 0.00 0.00 4.16
676 677 2.100605 AGGTCAATTTCTCGGAGCAC 57.899 50.000 0.00 0.00 0.00 4.40
677 678 1.347707 AGGTCAATTTCTCGGAGCACA 59.652 47.619 0.00 0.00 0.00 4.57
679 680 2.417719 GTCAATTTCTCGGAGCACAGT 58.582 47.619 0.00 0.00 0.00 3.55
680 681 3.585862 GTCAATTTCTCGGAGCACAGTA 58.414 45.455 0.00 0.00 0.00 2.74
681 682 3.368236 GTCAATTTCTCGGAGCACAGTAC 59.632 47.826 0.00 0.00 0.00 2.73
682 683 3.258372 TCAATTTCTCGGAGCACAGTACT 59.742 43.478 0.00 0.00 0.00 2.73
683 684 2.724977 TTTCTCGGAGCACAGTACTG 57.275 50.000 21.44 21.44 0.00 2.74
684 685 1.617322 TTCTCGGAGCACAGTACTGT 58.383 50.000 22.95 22.95 46.17 3.55
699 2662 7.404671 ACAGTACTGTGTATGTGATATGTGA 57.595 36.000 27.41 0.00 43.11 3.58
701 2664 8.138074 ACAGTACTGTGTATGTGATATGTGATC 58.862 37.037 27.41 0.00 43.11 2.92
702 2665 8.355913 CAGTACTGTGTATGTGATATGTGATCT 58.644 37.037 15.06 0.00 0.00 2.75
743 2927 8.465201 ACAAAGACTTATACTACTTAGGAACGG 58.535 37.037 0.00 0.00 0.00 4.44
746 2930 6.997476 AGACTTATACTACTTAGGAACGGAGG 59.003 42.308 0.00 0.00 0.00 4.30
752 2936 3.684408 ACTTAGGAACGGAGGGAGTAT 57.316 47.619 0.00 0.00 0.00 2.12
773 2962 0.999406 GTACTGTGTATGTGCGGCTG 59.001 55.000 0.00 0.00 0.00 4.85
778 3134 2.794910 CTGTGTATGTGCGGCTGTATAC 59.205 50.000 0.00 8.00 0.00 1.47
792 3148 4.212847 GGCTGTATACAGTGATGAATGCAG 59.787 45.833 28.95 5.33 45.45 4.41
843 3200 3.057315 ACGAATTGACCTTGGCATCTTTG 60.057 43.478 0.00 0.00 0.00 2.77
920 3277 3.194861 GCAACGATAGACAATACCAGCA 58.805 45.455 0.00 0.00 41.38 4.41
926 3283 7.704578 ACGATAGACAATACCAGCACTATAT 57.295 36.000 0.00 0.00 41.38 0.86
927 3284 8.803397 ACGATAGACAATACCAGCACTATATA 57.197 34.615 0.00 0.00 41.38 0.86
928 3285 9.409918 ACGATAGACAATACCAGCACTATATAT 57.590 33.333 0.00 0.00 41.38 0.86
1106 3470 6.652900 CCCGATCTCTTTCTTTCTTTCTTTCT 59.347 38.462 0.00 0.00 0.00 2.52
1141 3505 1.444895 GGCAATGCAAACCGAGCAG 60.445 57.895 7.79 0.00 46.36 4.24
1219 3585 2.607750 TCCCCCACTGACTGCCTC 60.608 66.667 0.00 0.00 0.00 4.70
1221 3587 2.667418 CCCCACTGACTGCCTCTG 59.333 66.667 0.00 0.00 0.00 3.35
1222 3588 2.219875 CCCCACTGACTGCCTCTGT 61.220 63.158 0.00 0.00 0.00 3.41
1223 3589 1.294780 CCCACTGACTGCCTCTGTC 59.705 63.158 0.00 0.00 33.83 3.51
1224 3590 1.190833 CCCACTGACTGCCTCTGTCT 61.191 60.000 5.65 0.00 34.25 3.41
1225 3591 0.246086 CCACTGACTGCCTCTGTCTC 59.754 60.000 5.65 0.00 34.25 3.36
1226 3592 0.246086 CACTGACTGCCTCTGTCTCC 59.754 60.000 5.65 0.00 34.25 3.71
1227 3593 0.114168 ACTGACTGCCTCTGTCTCCT 59.886 55.000 5.65 0.00 34.25 3.69
1228 3594 0.531657 CTGACTGCCTCTGTCTCCTG 59.468 60.000 5.65 0.00 34.25 3.86
1229 3595 0.113190 TGACTGCCTCTGTCTCCTGA 59.887 55.000 5.65 0.00 34.25 3.86
1422 3802 1.274167 TGATCTACGCTGTCCCGTTTT 59.726 47.619 0.00 0.00 42.20 2.43
1423 3803 2.289195 TGATCTACGCTGTCCCGTTTTT 60.289 45.455 0.00 0.00 42.20 1.94
1509 3895 1.029408 TGATTCGGGGTCGCCATTTG 61.029 55.000 6.75 0.00 36.13 2.32
1544 3930 3.134804 GCTTATTAGTGCTCCTCTGGGAA 59.865 47.826 0.00 0.00 41.69 3.97
1638 4025 5.840243 ATGCTGCTTTGCACATATTCTTA 57.160 34.783 0.00 0.00 46.33 2.10
1640 4027 4.701651 TGCTGCTTTGCACATATTCTTAGT 59.298 37.500 0.00 0.00 38.12 2.24
1683 4071 7.042950 TGTTAAATTGAGACGATTTCCCGATA 58.957 34.615 0.00 0.00 0.00 2.92
1763 4151 4.717280 TGTTTGTTTATTGGGTGGACCTTT 59.283 37.500 0.00 0.00 41.11 3.11
1827 4215 0.176910 TGACACGACACAGCAAGGAA 59.823 50.000 0.00 0.00 0.00 3.36
1880 4268 2.084546 GTTTCCACTCTGGCCACATAC 58.915 52.381 0.00 0.00 37.47 2.39
1913 4301 2.484770 GGGTTAGCTGTTGTGTCAGTGA 60.485 50.000 0.00 0.00 37.70 3.41
2037 4425 2.672098 AGTGACAGTGTGTCCTCTCTT 58.328 47.619 0.00 0.00 46.40 2.85
2232 4621 4.100189 AGGTTAGCTGTGTCCTCATGATAC 59.900 45.833 0.00 0.00 35.77 2.24
2348 4737 5.353123 TCACACTTTGTGTAGGTCTGTTTTC 59.647 40.000 6.22 0.00 45.65 2.29
2353 4742 3.199677 TGTGTAGGTCTGTTTTCCAACG 58.800 45.455 0.00 0.00 35.40 4.10
2803 5297 1.021202 TTGGAGGCTTTGTGTTCGTG 58.979 50.000 0.00 0.00 0.00 4.35
2985 5532 2.496899 AATGACTTACCTGCCACCAG 57.503 50.000 0.00 0.00 38.85 4.00
2997 5544 4.462483 ACCTGCCACCAGTTTAATACATTG 59.538 41.667 0.00 0.00 37.38 2.82
3007 5555 7.966204 ACCAGTTTAATACATTGCGAAATACAC 59.034 33.333 0.00 0.00 0.00 2.90
3328 5881 3.780294 ACATACTAAGGGCATCTCCAACA 59.220 43.478 0.00 0.00 36.21 3.33
3366 5919 0.101759 GCATACGTTAGGACCGAGCA 59.898 55.000 0.00 0.00 0.00 4.26
3508 6061 0.392336 GCCAATCAAAAGCCACCACA 59.608 50.000 0.00 0.00 0.00 4.17
3528 6081 1.988539 TACCCCTCTCTCCTCTCTGT 58.011 55.000 0.00 0.00 0.00 3.41
3529 6082 0.629058 ACCCCTCTCTCCTCTCTGTC 59.371 60.000 0.00 0.00 0.00 3.51
3530 6083 0.106217 CCCCTCTCTCCTCTCTGTCC 60.106 65.000 0.00 0.00 0.00 4.02
3531 6084 0.628522 CCCTCTCTCCTCTCTGTCCA 59.371 60.000 0.00 0.00 0.00 4.02
3532 6085 1.684869 CCCTCTCTCCTCTCTGTCCAC 60.685 61.905 0.00 0.00 0.00 4.02
3533 6086 1.378531 CTCTCTCCTCTCTGTCCACG 58.621 60.000 0.00 0.00 0.00 4.94
3534 6087 0.034960 TCTCTCCTCTCTGTCCACGG 60.035 60.000 0.00 0.00 0.00 4.94
3535 6088 1.662438 CTCTCCTCTCTGTCCACGGC 61.662 65.000 0.00 0.00 0.00 5.68
3539 6092 1.979155 CTCTCTGTCCACGGCTCCA 60.979 63.158 0.00 0.00 0.00 3.86
3598 6151 4.213482 AGGAGAACAACGTAAAGCATGTTC 59.787 41.667 16.92 16.92 0.00 3.18
4016 6569 5.611374 TGCCCTAATATGTGTAAAGAGCTC 58.389 41.667 5.27 5.27 0.00 4.09
4280 6969 7.397192 ACCTGCCTGTCATATCTTGTTAATTTT 59.603 33.333 0.00 0.00 0.00 1.82
4328 7017 7.457380 AATATATAACTCCCATGATCCAGGG 57.543 40.000 12.30 12.30 46.90 4.45
4540 7229 5.529060 ACTTTCTGACTTCACTGAAATGTCC 59.471 40.000 8.11 0.00 37.20 4.02
4552 7241 7.335627 TCACTGAAATGTCCGGTTATTTCTAT 58.664 34.615 28.88 20.63 41.54 1.98
4903 8191 4.917998 CAGCTATGATCATACGTGTACCAC 59.082 45.833 11.49 0.00 0.00 4.16
5243 8533 2.436646 CTGATGGCGGCGGTTCTT 60.437 61.111 9.78 0.00 0.00 2.52
6026 9337 2.480419 GCACACGCTGTTGAATAAGTCT 59.520 45.455 0.00 0.00 34.30 3.24
6335 9748 6.313519 AGATTACTCTTCCCATGCTTACAA 57.686 37.500 0.00 0.00 0.00 2.41
6668 10283 4.745125 CGAGTCAGTTTACTCTGCTTTCAA 59.255 41.667 0.00 0.00 43.11 2.69
6827 10463 2.369001 GCCCTCCCTCACTACCCT 59.631 66.667 0.00 0.00 0.00 4.34
6894 10530 1.443407 CGGAATCTGACCTCGGCAT 59.557 57.895 0.00 0.00 0.00 4.40
6964 10600 1.971481 TGCTCTCAATGTGTGCTTGT 58.029 45.000 10.08 0.00 0.00 3.16
7134 10771 4.034048 CGTGAGCAAGTTTAGTGAGTTGTT 59.966 41.667 0.00 0.00 33.48 2.83
7138 10775 7.011109 GTGAGCAAGTTTAGTGAGTTGTTAAGA 59.989 37.037 0.00 0.00 33.48 2.10
7146 10784 9.095065 GTTTAGTGAGTTGTTAAGAAGAGTCAA 57.905 33.333 0.00 0.00 0.00 3.18
7161 10799 4.749310 CAACTCTCGCAGCGGCCT 62.749 66.667 16.42 0.00 36.38 5.19
7211 11122 9.645059 CTCAGACTTCTGTAGATATAGAGAGAG 57.355 40.741 6.15 0.00 44.12 3.20
8037 12030 5.514279 AGCTGAAGAAATGTTGACTTTTCG 58.486 37.500 13.47 4.75 41.82 3.46
8319 12313 4.622740 GCAAAGCTGAAGATTTATTTGCGT 59.377 37.500 4.89 0.00 41.87 5.24
8530 12525 3.674997 TGCGCTAATTCTCTCCTTGTTT 58.325 40.909 9.73 0.00 0.00 2.83
8697 12693 3.254060 CAGTCACGGACTCGAATTGATT 58.746 45.455 3.87 0.00 41.37 2.57
8703 12699 3.000041 CGGACTCGAATTGATTGTTGGA 59.000 45.455 0.00 0.00 39.00 3.53
8846 12850 9.916360 TGATAGAGATTTTAGTGAGTACTACCA 57.084 33.333 0.00 0.00 39.06 3.25
8922 12926 9.736023 AACTTTGACTATGATTTTCACTTGTTC 57.264 29.630 0.00 0.00 0.00 3.18
9094 13107 8.739972 ACTACATTTGTTCTGATTTATTGGTCC 58.260 33.333 0.00 0.00 0.00 4.46
9095 13108 7.781324 ACATTTGTTCTGATTTATTGGTCCT 57.219 32.000 0.00 0.00 0.00 3.85
9100 13113 9.527157 TTTGTTCTGATTTATTGGTCCTCATTA 57.473 29.630 0.00 0.00 0.00 1.90
9201 13214 6.773976 ACCATGTTCAAATACGAATCCAAT 57.226 33.333 0.00 0.00 0.00 3.16
9238 13251 9.715123 TTGTTGACATGCACTAATATTTTATCG 57.285 29.630 0.00 0.00 0.00 2.92
9283 13296 8.918961 TTTAGCATAATTTACAAAATGGACCG 57.081 30.769 0.00 0.00 0.00 4.79
9315 13328 6.002704 AGGACGGAGGTAGTAGTAACATATG 58.997 44.000 0.00 0.00 0.00 1.78
9320 13333 6.261603 CGGAGGTAGTAGTAACATATGTGTGA 59.738 42.308 9.63 0.00 38.92 3.58
9322 13335 8.082852 GGAGGTAGTAGTAACATATGTGTGATG 58.917 40.741 9.63 0.00 38.92 3.07
9337 13350 1.133790 GTGATGTCATGCAAGCCTTCC 59.866 52.381 0.00 0.00 0.00 3.46
9338 13351 1.005097 TGATGTCATGCAAGCCTTCCT 59.995 47.619 0.00 0.00 0.00 3.36
9367 13380 4.580868 AGACGTAGACTCATCTTGTCTCA 58.419 43.478 0.00 0.00 41.82 3.27
9373 13386 1.277557 ACTCATCTTGTCTCAGGGTGC 59.722 52.381 0.00 0.00 0.00 5.01
9376 13389 0.687354 ATCTTGTCTCAGGGTGCGTT 59.313 50.000 0.00 0.00 0.00 4.84
9383 13396 3.196901 TGTCTCAGGGTGCGTTATGTTAT 59.803 43.478 0.00 0.00 0.00 1.89
9421 13434 5.132144 TGTTACCTCAAACCTCTCTTTCCTT 59.868 40.000 0.00 0.00 0.00 3.36
9422 13435 4.092116 ACCTCAAACCTCTCTTTCCTTG 57.908 45.455 0.00 0.00 0.00 3.61
9438 13451 2.030363 TCCTTGTTAATTGCTTGCCACG 60.030 45.455 0.00 0.00 0.00 4.94
9450 13463 2.323939 TTGCCACGTTAGCAAATTCG 57.676 45.000 17.94 0.00 46.71 3.34
9452 13465 1.195900 TGCCACGTTAGCAAATTCGTC 59.804 47.619 7.54 0.00 37.28 4.20
9466 13479 7.838498 AGCAAATTCGTCTTGATATACGTTAC 58.162 34.615 0.00 0.00 39.99 2.50
9467 13480 7.490079 AGCAAATTCGTCTTGATATACGTTACA 59.510 33.333 0.00 0.00 39.99 2.41
9516 13804 7.164122 TGATCTTCTAATGCATAAGGGCTTAG 58.836 38.462 0.00 0.00 34.04 2.18
9521 13809 7.078249 TCTAATGCATAAGGGCTTAGATGAA 57.922 36.000 0.00 0.00 33.10 2.57
9571 13955 7.938686 ACAATTATATCCCCAATGCATAGGTA 58.061 34.615 13.23 0.00 0.00 3.08
9580 13964 4.516698 CCCAATGCATAGGTACTTAGCTTG 59.483 45.833 0.00 0.00 41.75 4.01
9586 13970 6.703319 TGCATAGGTACTTAGCTTGTTGTAA 58.297 36.000 0.00 0.00 41.75 2.41
9665 17232 8.611654 AGTTTGCTTCATTTAAATGATTTGCT 57.388 26.923 29.72 21.29 44.27 3.91
9682 17249 1.663643 TGCTTAGATTTACGCGCTTGG 59.336 47.619 5.73 0.00 0.00 3.61
9704 17271 3.689649 GCGTTGATTCTTTGTAGGGTCAT 59.310 43.478 0.00 0.00 0.00 3.06
9707 17274 5.586243 CGTTGATTCTTTGTAGGGTCATCAT 59.414 40.000 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.260907 CCTTTTGTATGGCATGTCAGATCG 60.261 45.833 10.98 0.53 0.00 3.69
2 3 5.179045 CCTTTTGTATGGCATGTCAGATC 57.821 43.478 10.98 0.00 0.00 2.75
13 14 5.564651 CGCCCATAAATAGCCTTTTGTATGG 60.565 44.000 0.00 0.00 34.55 2.74
14 15 5.240623 TCGCCCATAAATAGCCTTTTGTATG 59.759 40.000 0.00 0.00 0.00 2.39
15 16 5.381757 TCGCCCATAAATAGCCTTTTGTAT 58.618 37.500 0.00 0.00 0.00 2.29
16 17 4.783055 TCGCCCATAAATAGCCTTTTGTA 58.217 39.130 0.00 0.00 0.00 2.41
17 18 3.626930 TCGCCCATAAATAGCCTTTTGT 58.373 40.909 0.00 0.00 0.00 2.83
18 19 4.647424 TTCGCCCATAAATAGCCTTTTG 57.353 40.909 0.00 0.00 0.00 2.44
19 20 6.152831 GGATATTCGCCCATAAATAGCCTTTT 59.847 38.462 2.92 0.00 39.63 2.27
20 21 5.652452 GGATATTCGCCCATAAATAGCCTTT 59.348 40.000 2.92 0.00 39.63 3.11
21 22 5.193679 GGATATTCGCCCATAAATAGCCTT 58.806 41.667 2.92 0.00 39.63 4.35
22 23 4.227300 TGGATATTCGCCCATAAATAGCCT 59.773 41.667 9.89 0.00 42.01 4.58
23 24 4.523083 TGGATATTCGCCCATAAATAGCC 58.477 43.478 3.14 3.14 41.91 3.93
24 25 6.699575 ATTGGATATTCGCCCATAAATAGC 57.300 37.500 0.00 0.00 31.66 2.97
26 27 9.913310 TCATAATTGGATATTCGCCCATAAATA 57.087 29.630 0.00 0.00 31.66 1.40
27 28 8.821686 TCATAATTGGATATTCGCCCATAAAT 57.178 30.769 0.00 0.00 31.66 1.40
28 29 7.148086 GCTCATAATTGGATATTCGCCCATAAA 60.148 37.037 0.00 0.00 31.66 1.40
29 30 6.318648 GCTCATAATTGGATATTCGCCCATAA 59.681 38.462 0.00 0.00 31.66 1.90
30 31 5.822519 GCTCATAATTGGATATTCGCCCATA 59.177 40.000 0.00 0.00 31.66 2.74
31 32 4.641989 GCTCATAATTGGATATTCGCCCAT 59.358 41.667 0.00 0.00 31.66 4.00
32 33 4.009675 GCTCATAATTGGATATTCGCCCA 58.990 43.478 0.00 0.00 0.00 5.36
33 34 3.378427 GGCTCATAATTGGATATTCGCCC 59.622 47.826 0.00 0.00 0.00 6.13
34 35 3.378427 GGGCTCATAATTGGATATTCGCC 59.622 47.826 0.00 0.00 31.75 5.54
35 36 3.063997 CGGGCTCATAATTGGATATTCGC 59.936 47.826 0.00 0.00 0.00 4.70
36 37 3.623060 CCGGGCTCATAATTGGATATTCG 59.377 47.826 0.00 0.00 0.00 3.34
37 38 3.947834 CCCGGGCTCATAATTGGATATTC 59.052 47.826 8.08 0.00 0.00 1.75
38 39 3.877735 GCCCGGGCTCATAATTGGATATT 60.878 47.826 38.76 0.00 38.26 1.28
39 40 2.357154 GCCCGGGCTCATAATTGGATAT 60.357 50.000 38.76 0.00 38.26 1.63
40 41 1.004277 GCCCGGGCTCATAATTGGATA 59.996 52.381 38.76 0.00 38.26 2.59
41 42 0.251341 GCCCGGGCTCATAATTGGAT 60.251 55.000 38.76 0.00 38.26 3.41
42 43 1.150536 GCCCGGGCTCATAATTGGA 59.849 57.895 38.76 0.00 38.26 3.53
43 44 3.763671 GCCCGGGCTCATAATTGG 58.236 61.111 38.76 0.00 38.26 3.16
53 54 4.496336 AAGCAGATGAGCCCGGGC 62.496 66.667 39.29 39.29 42.33 6.13
54 55 2.203126 GAAGCAGATGAGCCCGGG 60.203 66.667 19.09 19.09 34.23 5.73
55 56 2.203126 GGAAGCAGATGAGCCCGG 60.203 66.667 0.00 0.00 34.23 5.73
56 57 2.587194 CGGAAGCAGATGAGCCCG 60.587 66.667 0.00 0.00 34.07 6.13
57 58 2.203126 CCGGAAGCAGATGAGCCC 60.203 66.667 0.00 0.00 34.23 5.19
58 59 1.522580 GACCGGAAGCAGATGAGCC 60.523 63.158 9.46 0.00 34.23 4.70
59 60 0.391661 TTGACCGGAAGCAGATGAGC 60.392 55.000 9.46 0.00 0.00 4.26
60 61 1.205655 TCTTGACCGGAAGCAGATGAG 59.794 52.381 9.46 0.00 0.00 2.90
61 62 1.266178 TCTTGACCGGAAGCAGATGA 58.734 50.000 9.46 0.82 0.00 2.92
62 63 2.099141 TTCTTGACCGGAAGCAGATG 57.901 50.000 9.46 0.00 0.00 2.90
63 64 2.224523 TGTTTCTTGACCGGAAGCAGAT 60.225 45.455 9.46 0.00 32.03 2.90
64 65 1.140052 TGTTTCTTGACCGGAAGCAGA 59.860 47.619 9.46 0.16 32.03 4.26
65 66 1.593196 TGTTTCTTGACCGGAAGCAG 58.407 50.000 9.46 0.00 32.03 4.24
66 67 2.045561 TTGTTTCTTGACCGGAAGCA 57.954 45.000 9.46 0.00 33.42 3.91
67 68 3.004315 TGAATTGTTTCTTGACCGGAAGC 59.996 43.478 9.46 0.00 32.78 3.86
68 69 4.829064 TGAATTGTTTCTTGACCGGAAG 57.171 40.909 9.46 1.53 32.78 3.46
69 70 6.885952 TTATGAATTGTTTCTTGACCGGAA 57.114 33.333 9.46 0.00 32.78 4.30
70 71 6.885952 TTTATGAATTGTTTCTTGACCGGA 57.114 33.333 9.46 0.00 32.78 5.14
71 72 7.938563 TTTTTATGAATTGTTTCTTGACCGG 57.061 32.000 0.00 0.00 32.78 5.28
114 115 8.447833 CGCACCAAATTATCTAACTTAGACAAA 58.552 33.333 0.33 0.26 37.69 2.83
115 116 7.604927 ACGCACCAAATTATCTAACTTAGACAA 59.395 33.333 0.33 0.00 37.69 3.18
116 117 7.064134 CACGCACCAAATTATCTAACTTAGACA 59.936 37.037 0.33 0.00 37.69 3.41
117 118 7.277098 TCACGCACCAAATTATCTAACTTAGAC 59.723 37.037 0.33 0.00 37.69 2.59
118 119 7.324935 TCACGCACCAAATTATCTAACTTAGA 58.675 34.615 0.86 0.86 39.50 2.10
119 120 7.254455 CCTCACGCACCAAATTATCTAACTTAG 60.254 40.741 0.00 0.00 0.00 2.18
120 121 6.537301 CCTCACGCACCAAATTATCTAACTTA 59.463 38.462 0.00 0.00 0.00 2.24
121 122 5.354234 CCTCACGCACCAAATTATCTAACTT 59.646 40.000 0.00 0.00 0.00 2.66
122 123 4.876107 CCTCACGCACCAAATTATCTAACT 59.124 41.667 0.00 0.00 0.00 2.24
123 124 4.634443 ACCTCACGCACCAAATTATCTAAC 59.366 41.667 0.00 0.00 0.00 2.34
124 125 4.634004 CACCTCACGCACCAAATTATCTAA 59.366 41.667 0.00 0.00 0.00 2.10
125 126 4.188462 CACCTCACGCACCAAATTATCTA 58.812 43.478 0.00 0.00 0.00 1.98
126 127 3.009723 CACCTCACGCACCAAATTATCT 58.990 45.455 0.00 0.00 0.00 1.98
127 128 2.477863 GCACCTCACGCACCAAATTATC 60.478 50.000 0.00 0.00 0.00 1.75
128 129 1.472480 GCACCTCACGCACCAAATTAT 59.528 47.619 0.00 0.00 0.00 1.28
129 130 0.878416 GCACCTCACGCACCAAATTA 59.122 50.000 0.00 0.00 0.00 1.40
130 131 1.659794 GCACCTCACGCACCAAATT 59.340 52.632 0.00 0.00 0.00 1.82
131 132 2.616330 CGCACCTCACGCACCAAAT 61.616 57.895 0.00 0.00 0.00 2.32
132 133 3.276091 CGCACCTCACGCACCAAA 61.276 61.111 0.00 0.00 0.00 3.28
139 140 1.577328 AATTTGGAGCGCACCTCACG 61.577 55.000 24.52 0.00 42.62 4.35
140 141 0.598065 AAATTTGGAGCGCACCTCAC 59.402 50.000 24.52 0.00 42.62 3.51
141 142 1.327303 AAAATTTGGAGCGCACCTCA 58.673 45.000 24.52 11.44 42.62 3.86
142 143 2.747446 TCTAAAATTTGGAGCGCACCTC 59.253 45.455 24.52 5.97 39.98 3.85
143 144 2.749621 CTCTAAAATTTGGAGCGCACCT 59.250 45.455 24.52 5.86 31.39 4.00
144 145 3.136808 CTCTAAAATTTGGAGCGCACC 57.863 47.619 17.78 17.78 31.39 5.01
161 162 8.986929 AAGCTACTTAAATATCCAAATGCTCT 57.013 30.769 0.00 0.00 0.00 4.09
162 163 9.670719 GAAAGCTACTTAAATATCCAAATGCTC 57.329 33.333 0.00 0.00 0.00 4.26
163 164 9.189156 TGAAAGCTACTTAAATATCCAAATGCT 57.811 29.630 0.00 0.00 0.00 3.79
164 165 9.455847 CTGAAAGCTACTTAAATATCCAAATGC 57.544 33.333 0.00 0.00 0.00 3.56
196 197 9.905713 TCATATAGCTTTGACCTAATTTGTCTT 57.094 29.630 0.00 0.00 33.83 3.01
197 198 9.905713 TTCATATAGCTTTGACCTAATTTGTCT 57.094 29.630 0.00 0.00 33.83 3.41
198 199 9.937175 GTTCATATAGCTTTGACCTAATTTGTC 57.063 33.333 0.00 1.86 0.00 3.18
199 200 9.461312 TGTTCATATAGCTTTGACCTAATTTGT 57.539 29.630 0.00 0.00 0.00 2.83
205 206 9.542462 GTGTATTGTTCATATAGCTTTGACCTA 57.458 33.333 0.00 0.00 0.00 3.08
206 207 8.267894 AGTGTATTGTTCATATAGCTTTGACCT 58.732 33.333 0.00 0.00 0.00 3.85
207 208 8.438676 AGTGTATTGTTCATATAGCTTTGACC 57.561 34.615 0.00 0.00 0.00 4.02
220 221 9.997482 GAGTTCTGTTAAAAAGTGTATTGTTCA 57.003 29.630 0.00 0.00 0.00 3.18
221 222 9.997482 TGAGTTCTGTTAAAAAGTGTATTGTTC 57.003 29.630 0.00 0.00 0.00 3.18
228 229 9.705290 ACAAATTTGAGTTCTGTTAAAAAGTGT 57.295 25.926 24.64 0.00 0.00 3.55
237 238 9.034544 GCAAATAAGACAAATTTGAGTTCTGTT 57.965 29.630 24.64 12.00 43.79 3.16
238 239 7.653311 GGCAAATAAGACAAATTTGAGTTCTGT 59.347 33.333 24.64 0.24 43.79 3.41
239 240 7.148918 CGGCAAATAAGACAAATTTGAGTTCTG 60.149 37.037 24.64 14.00 43.79 3.02
240 241 6.863126 CGGCAAATAAGACAAATTTGAGTTCT 59.137 34.615 24.64 13.75 43.79 3.01
241 242 6.861055 TCGGCAAATAAGACAAATTTGAGTTC 59.139 34.615 24.64 11.69 43.79 3.01
242 243 6.744112 TCGGCAAATAAGACAAATTTGAGTT 58.256 32.000 24.64 17.40 43.79 3.01
243 244 6.206634 TCTCGGCAAATAAGACAAATTTGAGT 59.793 34.615 24.64 10.97 43.79 3.41
244 245 6.611381 TCTCGGCAAATAAGACAAATTTGAG 58.389 36.000 24.64 6.75 43.79 3.02
245 246 6.567687 TCTCGGCAAATAAGACAAATTTGA 57.432 33.333 24.64 2.30 43.79 2.69
246 247 5.287035 GCTCTCGGCAAATAAGACAAATTTG 59.713 40.000 16.67 16.67 43.87 2.32
247 248 5.183904 AGCTCTCGGCAAATAAGACAAATTT 59.816 36.000 0.00 0.00 44.79 1.82
248 249 4.702131 AGCTCTCGGCAAATAAGACAAATT 59.298 37.500 0.00 0.00 44.79 1.82
249 250 4.265073 AGCTCTCGGCAAATAAGACAAAT 58.735 39.130 0.00 0.00 44.79 2.32
250 251 3.674997 AGCTCTCGGCAAATAAGACAAA 58.325 40.909 0.00 0.00 44.79 2.83
251 252 3.334583 AGCTCTCGGCAAATAAGACAA 57.665 42.857 0.00 0.00 44.79 3.18
252 253 3.447586 AGTAGCTCTCGGCAAATAAGACA 59.552 43.478 0.00 0.00 44.79 3.41
253 254 4.045783 GAGTAGCTCTCGGCAAATAAGAC 58.954 47.826 0.00 0.00 44.79 3.01
254 255 3.699538 TGAGTAGCTCTCGGCAAATAAGA 59.300 43.478 0.00 0.00 45.46 2.10
255 256 4.046938 TGAGTAGCTCTCGGCAAATAAG 57.953 45.455 0.00 0.00 45.46 1.73
256 257 4.465632 TTGAGTAGCTCTCGGCAAATAA 57.534 40.909 0.00 0.00 45.46 1.40
257 258 4.465632 TTTGAGTAGCTCTCGGCAAATA 57.534 40.909 0.00 0.00 45.46 1.40
258 259 3.334583 TTTGAGTAGCTCTCGGCAAAT 57.665 42.857 0.00 0.00 45.46 2.32
259 260 2.831685 TTTGAGTAGCTCTCGGCAAA 57.168 45.000 0.00 0.00 45.46 3.68
260 261 2.028112 ACATTTGAGTAGCTCTCGGCAA 60.028 45.455 0.00 0.00 45.46 4.52
261 262 1.550524 ACATTTGAGTAGCTCTCGGCA 59.449 47.619 0.00 0.00 45.46 5.69
262 263 2.197577 GACATTTGAGTAGCTCTCGGC 58.802 52.381 0.00 0.00 45.46 5.54
263 264 2.166459 TGGACATTTGAGTAGCTCTCGG 59.834 50.000 0.00 0.00 45.46 4.63
264 265 3.510388 TGGACATTTGAGTAGCTCTCG 57.490 47.619 0.00 0.00 45.46 4.04
265 266 7.849804 TTATTTGGACATTTGAGTAGCTCTC 57.150 36.000 0.00 0.00 43.03 3.20
266 267 8.814038 AATTATTTGGACATTTGAGTAGCTCT 57.186 30.769 0.00 0.00 0.00 4.09
267 268 9.294030 CAAATTATTTGGACATTTGAGTAGCTC 57.706 33.333 9.63 0.00 39.34 4.09
268 269 9.023962 TCAAATTATTTGGACATTTGAGTAGCT 57.976 29.630 16.42 0.00 40.41 3.32
269 270 9.638239 TTCAAATTATTTGGACATTTGAGTAGC 57.362 29.630 16.42 0.00 44.02 3.58
283 284 7.117523 TGTCCGCTCCAAATTTCAAATTATTTG 59.882 33.333 11.12 11.12 40.01 2.32
284 285 7.158021 TGTCCGCTCCAAATTTCAAATTATTT 58.842 30.769 0.00 0.00 0.00 1.40
285 286 6.696411 TGTCCGCTCCAAATTTCAAATTATT 58.304 32.000 0.00 0.00 0.00 1.40
286 287 6.279513 TGTCCGCTCCAAATTTCAAATTAT 57.720 33.333 0.00 0.00 0.00 1.28
287 288 5.713792 TGTCCGCTCCAAATTTCAAATTA 57.286 34.783 0.00 0.00 0.00 1.40
288 289 4.599047 TGTCCGCTCCAAATTTCAAATT 57.401 36.364 0.00 0.00 0.00 1.82
289 290 4.220382 TGATGTCCGCTCCAAATTTCAAAT 59.780 37.500 0.00 0.00 0.00 2.32
290 291 3.571828 TGATGTCCGCTCCAAATTTCAAA 59.428 39.130 0.00 0.00 0.00 2.69
291 292 3.057596 GTGATGTCCGCTCCAAATTTCAA 60.058 43.478 0.00 0.00 0.00 2.69
292 293 2.487762 GTGATGTCCGCTCCAAATTTCA 59.512 45.455 0.00 0.00 0.00 2.69
293 294 2.476185 CGTGATGTCCGCTCCAAATTTC 60.476 50.000 0.00 0.00 0.00 2.17
294 295 1.468520 CGTGATGTCCGCTCCAAATTT 59.531 47.619 0.00 0.00 0.00 1.82
295 296 1.086696 CGTGATGTCCGCTCCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
296 297 0.249120 TCGTGATGTCCGCTCCAAAT 59.751 50.000 0.00 0.00 0.00 2.32
297 298 0.034198 TTCGTGATGTCCGCTCCAAA 59.966 50.000 0.00 0.00 0.00 3.28
298 299 0.669318 GTTCGTGATGTCCGCTCCAA 60.669 55.000 0.00 0.00 0.00 3.53
299 300 1.080093 GTTCGTGATGTCCGCTCCA 60.080 57.895 0.00 0.00 0.00 3.86
300 301 1.810030 GGTTCGTGATGTCCGCTCC 60.810 63.158 0.00 0.00 0.00 4.70
301 302 0.669318 TTGGTTCGTGATGTCCGCTC 60.669 55.000 0.00 0.00 0.00 5.03
302 303 0.250124 TTTGGTTCGTGATGTCCGCT 60.250 50.000 0.00 0.00 0.00 5.52
303 304 0.802494 ATTTGGTTCGTGATGTCCGC 59.198 50.000 0.00 0.00 0.00 5.54
304 305 4.570772 AGATAATTTGGTTCGTGATGTCCG 59.429 41.667 0.00 0.00 0.00 4.79
305 306 6.018180 GGTAGATAATTTGGTTCGTGATGTCC 60.018 42.308 0.00 0.00 0.00 4.02
306 307 6.537301 TGGTAGATAATTTGGTTCGTGATGTC 59.463 38.462 0.00 0.00 0.00 3.06
307 308 6.411376 TGGTAGATAATTTGGTTCGTGATGT 58.589 36.000 0.00 0.00 0.00 3.06
308 309 6.918892 TGGTAGATAATTTGGTTCGTGATG 57.081 37.500 0.00 0.00 0.00 3.07
309 310 6.017109 GCATGGTAGATAATTTGGTTCGTGAT 60.017 38.462 0.00 0.00 0.00 3.06
310 311 5.295787 GCATGGTAGATAATTTGGTTCGTGA 59.704 40.000 0.00 0.00 0.00 4.35
311 312 5.505654 GGCATGGTAGATAATTTGGTTCGTG 60.506 44.000 0.00 0.00 0.00 4.35
312 313 4.578928 GGCATGGTAGATAATTTGGTTCGT 59.421 41.667 0.00 0.00 0.00 3.85
313 314 4.578516 TGGCATGGTAGATAATTTGGTTCG 59.421 41.667 0.00 0.00 0.00 3.95
314 315 6.463995 TTGGCATGGTAGATAATTTGGTTC 57.536 37.500 0.00 0.00 0.00 3.62
315 316 6.865834 TTTGGCATGGTAGATAATTTGGTT 57.134 33.333 0.00 0.00 0.00 3.67
316 317 6.865834 TTTTGGCATGGTAGATAATTTGGT 57.134 33.333 0.00 0.00 0.00 3.67
380 381 3.667497 TGCACCCGCATTGAATAAAAA 57.333 38.095 0.00 0.00 45.36 1.94
392 393 4.479993 AGGCTCATCTGCACCCGC 62.480 66.667 0.00 0.00 39.24 6.13
393 394 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
394 395 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
395 396 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
396 397 1.153208 CTCCCAGGCTCATCTGCAC 60.153 63.158 0.00 0.00 33.64 4.57
397 398 3.040206 GCTCCCAGGCTCATCTGCA 62.040 63.158 0.00 0.00 33.64 4.41
398 399 2.203181 GCTCCCAGGCTCATCTGC 60.203 66.667 0.00 0.00 33.64 4.26
399 400 1.918467 TTGGCTCCCAGGCTCATCTG 61.918 60.000 0.00 0.00 41.96 2.90
400 401 1.210204 TTTGGCTCCCAGGCTCATCT 61.210 55.000 0.00 0.00 41.96 2.90
401 402 0.323725 TTTTGGCTCCCAGGCTCATC 60.324 55.000 0.00 0.00 41.96 2.92
402 403 0.613012 GTTTTGGCTCCCAGGCTCAT 60.613 55.000 0.00 0.00 41.96 2.90
403 404 1.228552 GTTTTGGCTCCCAGGCTCA 60.229 57.895 0.00 0.00 41.96 4.26
404 405 2.335712 CGTTTTGGCTCCCAGGCTC 61.336 63.158 0.00 0.00 41.96 4.70
405 406 2.282462 CGTTTTGGCTCCCAGGCT 60.282 61.111 0.00 0.00 41.96 4.58
406 407 4.056125 GCGTTTTGGCTCCCAGGC 62.056 66.667 0.00 0.00 41.77 4.85
407 408 3.373565 GGCGTTTTGGCTCCCAGG 61.374 66.667 0.00 0.00 40.72 4.45
414 415 0.598065 AATGAGTGAGGCGTTTTGGC 59.402 50.000 0.00 0.00 45.27 4.52
415 416 1.879380 TGAATGAGTGAGGCGTTTTGG 59.121 47.619 0.00 0.00 0.00 3.28
416 417 3.495193 CATGAATGAGTGAGGCGTTTTG 58.505 45.455 0.00 0.00 0.00 2.44
417 418 2.489329 CCATGAATGAGTGAGGCGTTTT 59.511 45.455 0.00 0.00 0.00 2.43
418 419 2.086869 CCATGAATGAGTGAGGCGTTT 58.913 47.619 0.00 0.00 0.00 3.60
419 420 1.679944 CCCATGAATGAGTGAGGCGTT 60.680 52.381 0.00 0.00 0.00 4.84
420 421 0.107508 CCCATGAATGAGTGAGGCGT 60.108 55.000 0.00 0.00 0.00 5.68
421 422 0.178767 TCCCATGAATGAGTGAGGCG 59.821 55.000 0.00 0.00 0.00 5.52
422 423 2.425143 TTCCCATGAATGAGTGAGGC 57.575 50.000 0.00 0.00 0.00 4.70
423 424 4.434545 AGATTCCCATGAATGAGTGAGG 57.565 45.455 0.00 0.00 41.30 3.86
424 425 6.770746 AAAAGATTCCCATGAATGAGTGAG 57.229 37.500 0.00 0.00 41.30 3.51
425 426 6.764308 GAAAAGATTCCCATGAATGAGTGA 57.236 37.500 0.00 0.00 41.30 3.41
535 536 4.152402 CACGCTAGCACATTAAGTCTTGTT 59.848 41.667 16.45 0.00 0.00 2.83
556 557 2.448736 GGGGAGGGAGGGATCCAC 60.449 72.222 15.23 6.86 37.33 4.02
573 574 1.732259 ACATTAAACTTCGCTGAGCCG 59.268 47.619 0.00 0.00 0.00 5.52
617 618 0.605319 CACCGCAGCTCCTTTACCAA 60.605 55.000 0.00 0.00 0.00 3.67
653 654 3.198872 GCTCCGAGAAATTGACCTAAGG 58.801 50.000 0.00 0.00 0.00 2.69
676 677 8.355913 AGATCACATATCACATACACAGTACTG 58.644 37.037 21.44 21.44 0.00 2.74
677 678 8.470657 AGATCACATATCACATACACAGTACT 57.529 34.615 0.00 0.00 0.00 2.73
717 2680 8.465201 CCGTTCCTAAGTAGTATAAGTCTTTGT 58.535 37.037 0.00 0.00 0.00 2.83
727 2690 4.167697 ACTCCCTCCGTTCCTAAGTAGTAT 59.832 45.833 0.00 0.00 0.00 2.12
730 2693 3.015675 ACTCCCTCCGTTCCTAAGTAG 57.984 52.381 0.00 0.00 0.00 2.57
733 2917 4.727677 ACTATACTCCCTCCGTTCCTAAG 58.272 47.826 0.00 0.00 0.00 2.18
737 2921 3.819902 CAGTACTATACTCCCTCCGTTCC 59.180 52.174 0.00 0.00 36.76 3.62
743 2927 6.294065 GCACATACACAGTACTATACTCCCTC 60.294 46.154 0.00 0.00 36.76 4.30
746 2930 5.450171 CGCACATACACAGTACTATACTCC 58.550 45.833 0.00 0.00 36.76 3.85
752 2936 2.097036 AGCCGCACATACACAGTACTA 58.903 47.619 0.00 0.00 0.00 1.82
773 2962 4.067896 CCCCTGCATTCATCACTGTATAC 58.932 47.826 0.00 0.00 0.00 1.47
778 3134 1.389609 GGCCCCTGCATTCATCACTG 61.390 60.000 0.00 0.00 40.13 3.66
843 3200 2.687418 ATCATCCGAGCATGTGGGCC 62.687 60.000 0.00 0.00 0.00 5.80
846 3203 1.233019 GGAATCATCCGAGCATGTGG 58.767 55.000 0.00 0.00 35.59 4.17
920 3277 9.706691 CTCCATCGTTTTGGTTGTATATATAGT 57.293 33.333 0.00 0.00 38.01 2.12
926 3283 6.288941 TCTCTCCATCGTTTTGGTTGTATA 57.711 37.500 2.60 0.00 38.01 1.47
927 3284 5.160607 TCTCTCCATCGTTTTGGTTGTAT 57.839 39.130 2.60 0.00 38.01 2.29
928 3285 4.610605 TCTCTCCATCGTTTTGGTTGTA 57.389 40.909 2.60 0.00 38.01 2.41
929 3286 3.485463 TCTCTCCATCGTTTTGGTTGT 57.515 42.857 2.60 0.00 38.01 3.32
1032 3396 5.125578 GGAATTCAAAGACCCAAGTACATCC 59.874 44.000 7.93 0.00 0.00 3.51
1037 3401 5.163034 TGGAAGGAATTCAAAGACCCAAGTA 60.163 40.000 7.93 0.00 0.00 2.24
1106 3470 5.406649 CATTGCCGCCTTTATACAAAGAAA 58.593 37.500 0.00 0.00 43.32 2.52
1114 3478 2.159170 GGTTTGCATTGCCGCCTTTATA 60.159 45.455 6.12 0.00 0.00 0.98
1186 3550 2.617274 GGAGTTGAGTTGTGGCGCC 61.617 63.158 22.73 22.73 0.00 6.53
1221 3587 0.252284 TTGGGGAGGAGTCAGGAGAC 60.252 60.000 0.00 0.00 45.31 3.36
1222 3588 0.491823 TTTGGGGAGGAGTCAGGAGA 59.508 55.000 0.00 0.00 0.00 3.71
1223 3589 0.615850 GTTTGGGGAGGAGTCAGGAG 59.384 60.000 0.00 0.00 0.00 3.69
1224 3590 0.840722 GGTTTGGGGAGGAGTCAGGA 60.841 60.000 0.00 0.00 0.00 3.86
1225 3591 1.685820 GGTTTGGGGAGGAGTCAGG 59.314 63.158 0.00 0.00 0.00 3.86
1226 3592 1.685820 GGGTTTGGGGAGGAGTCAG 59.314 63.158 0.00 0.00 0.00 3.51
1227 3593 1.850755 GGGGTTTGGGGAGGAGTCA 60.851 63.158 0.00 0.00 0.00 3.41
1228 3594 2.967946 CGGGGTTTGGGGAGGAGTC 61.968 68.421 0.00 0.00 0.00 3.36
1229 3595 2.933834 CGGGGTTTGGGGAGGAGT 60.934 66.667 0.00 0.00 0.00 3.85
1422 3802 1.414919 ACAGACCAGCCGTAAACTGAA 59.585 47.619 0.00 0.00 37.32 3.02
1423 3803 1.045407 ACAGACCAGCCGTAAACTGA 58.955 50.000 0.00 0.00 37.32 3.41
1479 3860 2.574212 CGAATCACGCGCAAAGCC 60.574 61.111 5.73 0.00 44.76 4.35
1504 3890 0.097674 GCTCGTAGCAGCACCAAATG 59.902 55.000 0.00 0.00 41.89 2.32
1509 3895 1.941325 AATAAGCTCGTAGCAGCACC 58.059 50.000 9.09 0.00 45.56 5.01
1564 3950 2.037251 AGCACATATTCGGTATTCGCCT 59.963 45.455 0.00 0.00 39.05 5.52
1638 4025 3.394836 GCGAGCCTCCCTGGAACT 61.395 66.667 0.00 0.00 38.35 3.01
1640 4027 2.300967 AATGCGAGCCTCCCTGGAA 61.301 57.895 0.00 0.00 38.35 3.53
1683 4071 1.605712 GCTCGTCCACAACTACAAGCT 60.606 52.381 0.00 0.00 0.00 3.74
1763 4151 4.155099 CCACATCAACAACGCTAACCATTA 59.845 41.667 0.00 0.00 0.00 1.90
1827 4215 0.467290 ACCAGCCAACAATCCAACGT 60.467 50.000 0.00 0.00 0.00 3.99
1880 4268 1.202580 AGCTAACCCAGATAAGCAGCG 60.203 52.381 0.00 0.00 37.44 5.18
1913 4301 2.028112 TCAACTCAGACAATAAGCCGCT 60.028 45.455 0.00 0.00 0.00 5.52
2037 4425 3.561310 CAGCAAGCAGTAAAACACAGAGA 59.439 43.478 0.00 0.00 0.00 3.10
2204 4593 3.526534 GAGGACACAGCTAACCTCATTC 58.473 50.000 17.11 0.00 45.53 2.67
2331 4720 3.623960 CGTTGGAAAACAGACCTACACAA 59.376 43.478 0.00 0.00 33.04 3.33
2348 4737 5.804979 AGAACAAAATCAACAACTTCGTTGG 59.195 36.000 10.99 0.00 46.50 3.77
2353 4742 6.645700 TGCAAGAACAAAATCAACAACTTC 57.354 33.333 0.00 0.00 0.00 3.01
2388 4777 6.772233 TGTTTGTAGCATAGCCATCACATTAT 59.228 34.615 0.00 0.00 0.00 1.28
3007 5555 9.559958 GATAGGACTTGTTCACACAAAAATATG 57.440 33.333 0.00 0.00 42.53 1.78
3328 5881 1.157870 CGGGTGTTTTGAGCGACAGT 61.158 55.000 0.00 0.00 0.00 3.55
3366 5919 0.981183 TGGCAAACTATGTCCGGACT 59.019 50.000 33.39 21.29 30.45 3.85
3508 6061 2.445525 GACAGAGAGGAGAGAGGGGTAT 59.554 54.545 0.00 0.00 0.00 2.73
3598 6151 0.320771 ACAAGTAGCAGCTTCCACCG 60.321 55.000 0.00 0.00 0.00 4.94
3756 6309 2.103771 TGCCAAAACATGCTAGCCAAAA 59.896 40.909 13.29 0.00 0.00 2.44
4016 6569 7.542477 ACACAGTCTATTACTCTGTTTTCGATG 59.458 37.037 0.00 0.00 34.02 3.84
4328 7017 9.959749 TTCAGAGTCAAAATAAACCATACAAAC 57.040 29.630 0.00 0.00 0.00 2.93
4540 7229 9.751542 AATGTCAGAACTAGATAGAAATAACCG 57.248 33.333 0.00 0.00 0.00 4.44
4903 8191 3.117832 CGCACAGAAATTAAACAGCAACG 59.882 43.478 0.00 0.00 0.00 4.10
4965 8253 1.216990 GAGATCCCAACCCCACATCT 58.783 55.000 0.00 0.00 0.00 2.90
5243 8533 2.753452 TGGCAAAACGACACCACTAAAA 59.247 40.909 0.00 0.00 0.00 1.52
5956 9247 8.257306 GCATGAAAAATAAAAATCTACCCTCCA 58.743 33.333 0.00 0.00 0.00 3.86
5957 9248 8.478066 AGCATGAAAAATAAAAATCTACCCTCC 58.522 33.333 0.00 0.00 0.00 4.30
5958 9249 9.875691 AAGCATGAAAAATAAAAATCTACCCTC 57.124 29.630 0.00 0.00 0.00 4.30
6026 9337 4.467082 AGCATGCATAGAACCAAATTGGAA 59.533 37.500 20.25 1.38 40.96 3.53
6193 9508 1.728323 TGATCAGTGGTGTTCTCCCA 58.272 50.000 0.00 0.00 0.00 4.37
6206 9521 8.352201 TGTTTTCTTTGGTGATAACTTGATCAG 58.648 33.333 0.00 0.00 36.51 2.90
6668 10283 3.695830 CCATATAATGGCCACGTAGGT 57.304 47.619 8.16 0.00 44.70 3.08
6827 10463 0.833287 GGGAGCAGCAGATCAAGGTA 59.167 55.000 0.00 0.00 0.00 3.08
6894 10530 2.172483 GAAGGCGACCAGGAGAGCAA 62.172 60.000 0.00 0.00 0.00 3.91
6964 10600 2.041251 TGCTGATTCCATGCATCGAA 57.959 45.000 9.25 9.25 0.00 3.71
7085 10722 4.638421 CGATTTGGACTTTTGTATAGCCCA 59.362 41.667 0.00 0.00 0.00 5.36
7161 10799 1.891919 GCCAGTGCCACTCGTTTGA 60.892 57.895 0.00 0.00 0.00 2.69
7211 11122 0.589708 GTCAAACACAGCGTTACCCC 59.410 55.000 0.00 0.00 36.59 4.95
7979 11971 6.207810 AGGCTAGATACTGAATCGTAAGGAAG 59.792 42.308 0.00 0.00 39.79 3.46
7994 11986 3.804873 GCTAAACTGCACAGGCTAGATAC 59.195 47.826 2.21 0.00 41.91 2.24
8021 12013 5.888412 AATGCACGAAAAGTCAACATTTC 57.112 34.783 0.00 1.72 32.17 2.17
8028 12021 2.223363 TGCGAAAATGCACGAAAAGTCA 60.223 40.909 0.00 0.00 40.62 3.41
8031 12024 2.649516 TCTGCGAAAATGCACGAAAAG 58.350 42.857 0.00 0.00 40.62 2.27
8037 12030 1.199789 TGACCATCTGCGAAAATGCAC 59.800 47.619 0.00 0.00 40.62 4.57
8319 12313 3.283259 TGTGTGGTTGTGTGGTTCATA 57.717 42.857 0.00 0.00 0.00 2.15
8530 12525 9.944663 GTTTTTACAAGAACACTGATGATAACA 57.055 29.630 0.00 0.00 0.00 2.41
8697 12693 4.595031 TGCCATTGCACTCCAACA 57.405 50.000 0.00 0.00 44.23 3.33
8755 12751 5.215239 CGCAAGCTTTCCAAAAAGAAAAA 57.785 34.783 0.00 0.00 43.90 1.94
8756 12752 4.856115 CGCAAGCTTTCCAAAAAGAAAA 57.144 36.364 0.00 0.00 43.90 2.29
8776 12772 1.197721 GAGACCAACAGATGTTTGGCG 59.802 52.381 11.62 0.00 34.23 5.69
8983 12987 7.595604 TGCATGCATTGAATATGTATAACCAG 58.404 34.615 18.46 0.00 0.00 4.00
9058 13071 9.920946 ATCAGAACAAATGTAGTACCCATTATT 57.079 29.630 8.36 6.81 32.40 1.40
9062 13075 9.920946 ATAAATCAGAACAAATGTAGTACCCAT 57.079 29.630 0.00 0.00 0.00 4.00
9072 13085 7.829725 TGAGGACCAATAAATCAGAACAAATG 58.170 34.615 0.00 0.00 0.00 2.32
9074 13087 8.421249 AATGAGGACCAATAAATCAGAACAAA 57.579 30.769 0.00 0.00 0.00 2.83
9075 13088 9.699410 ATAATGAGGACCAATAAATCAGAACAA 57.301 29.630 0.00 0.00 0.00 2.83
9174 13187 6.432783 TGGATTCGTATTTGAACATGGTTCTT 59.567 34.615 10.14 0.00 0.00 2.52
9176 13189 6.189677 TGGATTCGTATTTGAACATGGTTC 57.810 37.500 0.00 2.25 0.00 3.62
9268 13281 6.071840 CCTGGTTTATCGGTCCATTTTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
9280 13293 0.822164 CTCCGTCCTGGTTTATCGGT 59.178 55.000 0.00 0.00 41.58 4.69
9283 13296 3.029570 ACTACCTCCGTCCTGGTTTATC 58.970 50.000 0.00 0.00 39.52 1.75
9297 13310 8.630917 ACATCACACATATGTTACTACTACCTC 58.369 37.037 5.37 0.00 36.72 3.85
9315 13328 1.171308 AGGCTTGCATGACATCACAC 58.829 50.000 8.34 0.00 0.00 3.82
9320 13333 2.226962 AAGGAAGGCTTGCATGACAT 57.773 45.000 21.16 0.00 0.00 3.06
9322 13335 4.725790 AATAAAGGAAGGCTTGCATGAC 57.274 40.909 21.16 0.00 0.00 3.06
9337 13350 9.790389 ACAAGATGAGTCTACGTCTAAATAAAG 57.210 33.333 0.00 0.00 35.43 1.85
9338 13351 9.784680 GACAAGATGAGTCTACGTCTAAATAAA 57.215 33.333 0.00 0.00 35.60 1.40
9367 13380 4.193865 GTTACCATAACATAACGCACCCT 58.806 43.478 0.00 0.00 0.00 4.34
9412 13425 4.925646 GGCAAGCAATTAACAAGGAAAGAG 59.074 41.667 0.00 0.00 0.00 2.85
9421 13434 3.610585 GCTAACGTGGCAAGCAATTAACA 60.611 43.478 4.08 0.00 36.26 2.41
9422 13435 2.914838 GCTAACGTGGCAAGCAATTAAC 59.085 45.455 4.08 0.00 36.26 2.01
9438 13451 7.838498 ACGTATATCAAGACGAATTTGCTAAC 58.162 34.615 2.88 0.00 42.88 2.34
9485 13498 9.676861 CCCTTATGCATTAGAAGATCATAATGA 57.323 33.333 20.67 11.37 40.34 2.57
9487 13500 8.334734 AGCCCTTATGCATTAGAAGATCATAAT 58.665 33.333 14.17 0.00 31.65 1.28
9488 13501 7.693132 AGCCCTTATGCATTAGAAGATCATAA 58.307 34.615 14.17 0.00 28.92 1.90
9489 13502 7.262990 AGCCCTTATGCATTAGAAGATCATA 57.737 36.000 14.17 0.00 28.92 2.15
9490 13503 6.137104 AGCCCTTATGCATTAGAAGATCAT 57.863 37.500 14.17 0.00 28.92 2.45
9491 13504 5.573380 AGCCCTTATGCATTAGAAGATCA 57.427 39.130 14.17 0.00 28.92 2.92
9492 13505 7.390027 TCTAAGCCCTTATGCATTAGAAGATC 58.610 38.462 14.17 3.38 32.81 2.75
9493 13506 7.321717 TCTAAGCCCTTATGCATTAGAAGAT 57.678 36.000 14.17 1.32 32.81 2.40
9499 13787 6.712095 CACTTCATCTAAGCCCTTATGCATTA 59.288 38.462 3.54 0.00 38.93 1.90
9506 13794 5.918608 CTTAGCACTTCATCTAAGCCCTTA 58.081 41.667 0.00 0.00 38.93 2.69
9546 13834 6.804083 ACCTATGCATTGGGGATATAATTGT 58.196 36.000 27.42 2.83 0.00 2.71
9550 13838 7.582909 AAGTACCTATGCATTGGGGATATAA 57.417 36.000 27.42 4.84 0.00 0.98
9571 13955 6.760291 AGAGCTTAGTTACAACAAGCTAAGT 58.240 36.000 21.15 12.45 44.97 2.24
9614 17181 5.295292 ACCGATGCATGAAAGAGTTTATCAG 59.705 40.000 2.46 0.00 0.00 2.90
9616 17183 5.294306 TCACCGATGCATGAAAGAGTTTATC 59.706 40.000 2.46 0.00 0.00 1.75
9624 17191 3.495193 CAAACTCACCGATGCATGAAAG 58.505 45.455 2.46 0.00 0.00 2.62
9625 17192 2.351641 GCAAACTCACCGATGCATGAAA 60.352 45.455 2.46 0.00 38.63 2.69
9626 17193 1.199789 GCAAACTCACCGATGCATGAA 59.800 47.619 2.46 0.00 38.63 2.57
9627 17194 0.804364 GCAAACTCACCGATGCATGA 59.196 50.000 2.46 0.00 38.63 3.07
9628 17195 0.806868 AGCAAACTCACCGATGCATG 59.193 50.000 2.46 0.00 41.18 4.06
9629 17196 1.470098 GAAGCAAACTCACCGATGCAT 59.530 47.619 0.00 0.00 41.18 3.96
9635 17202 6.148948 TCATTTAAATGAAGCAAACTCACCG 58.851 36.000 25.11 0.00 42.11 4.94
9682 17249 3.071479 TGACCCTACAAAGAATCAACGC 58.929 45.455 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.