Multiple sequence alignment - TraesCS3B01G329700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G329700 chr3B 100.000 3562 0 0 1 3562 532668948 532665387 0.000000e+00 6578
1 TraesCS3B01G329700 chr3B 99.091 110 1 0 2524 2633 190911654 190911763 7.800000e-47 198
2 TraesCS3B01G329700 chr3B 97.273 110 3 0 2524 2633 34228411 34228520 1.690000e-43 187
3 TraesCS3B01G329700 chr3B 96.364 110 4 0 2524 2633 34128104 34128213 7.860000e-42 182
4 TraesCS3B01G329700 chr3B 96.364 110 4 0 2524 2633 34172907 34173016 7.860000e-42 182
5 TraesCS3B01G329700 chr3D 93.152 1840 45 22 697 2476 406773601 406771783 0.000000e+00 2625
6 TraesCS3B01G329700 chr3D 89.203 602 33 10 2628 3210 406771761 406771173 0.000000e+00 723
7 TraesCS3B01G329700 chr3D 97.030 202 5 1 3361 3562 406771181 406770981 4.400000e-89 339
8 TraesCS3B01G329700 chr3D 97.576 165 2 2 3200 3363 432025818 432025655 7.530000e-72 281
9 TraesCS3B01G329700 chr3D 86.957 161 18 3 1550 1707 376169944 376169784 1.020000e-40 178
10 TraesCS3B01G329700 chr3A 88.428 1495 54 44 1018 2434 544969082 544970535 0.000000e+00 1692
11 TraesCS3B01G329700 chr3A 95.539 269 8 3 697 962 544968298 544968565 9.140000e-116 427
12 TraesCS3B01G329700 chr3A 100.000 150 0 0 3211 3360 672867980 672868129 9.740000e-71 278
13 TraesCS3B01G329700 chr3A 77.917 480 52 18 2628 3070 544970611 544971073 2.120000e-62 250
14 TraesCS3B01G329700 chr3A 86.957 161 18 3 1550 1707 500978798 500978638 1.020000e-40 178
15 TraesCS3B01G329700 chr3A 90.299 134 10 3 2501 2634 661930779 661930649 4.730000e-39 172
16 TraesCS3B01G329700 chr5B 96.396 666 24 0 1 666 425662208 425662873 0.000000e+00 1098
17 TraesCS3B01G329700 chr5B 94.819 386 11 1 1522 1907 488559768 488560144 8.510000e-166 593
18 TraesCS3B01G329700 chr7B 95.646 666 29 0 1 666 166985111 166985776 0.000000e+00 1070
19 TraesCS3B01G329700 chr7B 94.989 439 13 1 1469 1907 712841378 712841807 0.000000e+00 680
20 TraesCS3B01G329700 chr7B 94.819 386 11 1 1522 1907 712841862 712842238 8.510000e-166 593
21 TraesCS3B01G329700 chr6B 95.373 670 24 2 1 670 560194336 560193674 0.000000e+00 1059
22 TraesCS3B01G329700 chr6B 95.067 669 33 0 1 669 583269373 583268705 0.000000e+00 1053
23 TraesCS3B01G329700 chr6B 94.776 670 28 4 1 670 134104820 134105482 0.000000e+00 1037
24 TraesCS3B01G329700 chr6B 94.065 674 31 4 1 674 607011240 607010576 0.000000e+00 1014
25 TraesCS3B01G329700 chr6B 97.345 113 3 0 2521 2633 285804203 285804315 3.630000e-45 193
26 TraesCS3B01G329700 chr6B 94.915 118 5 1 2514 2630 584310962 584310845 2.180000e-42 183
27 TraesCS3B01G329700 chr4A 95.217 669 29 1 1 669 650063262 650062597 0.000000e+00 1055
28 TraesCS3B01G329700 chr4A 95.331 257 9 1 1651 1907 59318032 59318285 4.280000e-109 405
29 TraesCS3B01G329700 chr4A 95.516 223 10 0 1688 1910 58530198 58529976 1.220000e-94 357
30 TraesCS3B01G329700 chr2B 94.918 669 34 0 1 669 760937472 760936804 0.000000e+00 1048
31 TraesCS3B01G329700 chr2B 93.520 679 33 2 1 671 721353696 721354371 0.000000e+00 1000
32 TraesCS3B01G329700 chr2B 98.182 110 2 0 2521 2630 620631596 620631487 3.630000e-45 193
33 TraesCS3B01G329700 chr4B 100.000 152 0 0 3210 3361 48101686 48101535 7.530000e-72 281
34 TraesCS3B01G329700 chr4D 100.000 151 0 0 3211 3361 365184114 365183964 2.710000e-71 279
35 TraesCS3B01G329700 chr2D 100.000 151 0 0 3210 3360 618082923 618082773 2.710000e-71 279
36 TraesCS3B01G329700 chr2D 100.000 150 0 0 3211 3360 21932757 21932608 9.740000e-71 278
37 TraesCS3B01G329700 chr6D 98.693 153 2 0 3208 3360 429468299 429468451 4.530000e-69 272
38 TraesCS3B01G329700 chr6D 96.774 155 3 1 3206 3360 323797227 323797075 1.270000e-64 257
39 TraesCS3B01G329700 chr1B 89.252 214 17 5 1511 1718 576521677 576521890 2.730000e-66 263
40 TraesCS3B01G329700 chr1B 96.396 111 4 0 2523 2633 396612909 396613019 2.180000e-42 183
41 TraesCS3B01G329700 chr7D 98.000 150 3 0 3211 3360 201160740 201160591 9.810000e-66 261
42 TraesCS3B01G329700 chr1A 88.785 214 18 3 1511 1718 521738942 521739155 1.270000e-64 257
43 TraesCS3B01G329700 chr1D 88.318 214 19 3 1511 1718 426652217 426652430 5.900000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G329700 chr3B 532665387 532668948 3561 True 6578.000000 6578 100.000000 1 3562 1 chr3B.!!$R1 3561
1 TraesCS3B01G329700 chr3D 406770981 406773601 2620 True 1229.000000 2625 93.128333 697 3562 3 chr3D.!!$R3 2865
2 TraesCS3B01G329700 chr3A 544968298 544971073 2775 False 789.666667 1692 87.294667 697 3070 3 chr3A.!!$F2 2373
3 TraesCS3B01G329700 chr5B 425662208 425662873 665 False 1098.000000 1098 96.396000 1 666 1 chr5B.!!$F1 665
4 TraesCS3B01G329700 chr7B 166985111 166985776 665 False 1070.000000 1070 95.646000 1 666 1 chr7B.!!$F1 665
5 TraesCS3B01G329700 chr7B 712841378 712842238 860 False 636.500000 680 94.904000 1469 1907 2 chr7B.!!$F2 438
6 TraesCS3B01G329700 chr6B 560193674 560194336 662 True 1059.000000 1059 95.373000 1 670 1 chr6B.!!$R1 669
7 TraesCS3B01G329700 chr6B 583268705 583269373 668 True 1053.000000 1053 95.067000 1 669 1 chr6B.!!$R2 668
8 TraesCS3B01G329700 chr6B 134104820 134105482 662 False 1037.000000 1037 94.776000 1 670 1 chr6B.!!$F1 669
9 TraesCS3B01G329700 chr6B 607010576 607011240 664 True 1014.000000 1014 94.065000 1 674 1 chr6B.!!$R4 673
10 TraesCS3B01G329700 chr4A 650062597 650063262 665 True 1055.000000 1055 95.217000 1 669 1 chr4A.!!$R2 668
11 TraesCS3B01G329700 chr2B 760936804 760937472 668 True 1048.000000 1048 94.918000 1 669 1 chr2B.!!$R2 668
12 TraesCS3B01G329700 chr2B 721353696 721354371 675 False 1000.000000 1000 93.520000 1 671 1 chr2B.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 698 0.111061 TACAGCATGATGGATGGGCC 59.889 55.0 16.55 0.0 39.69 5.80 F
1910 2857 0.537188 AACCATTGATCGGCTCGTCT 59.463 50.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 3176 0.391130 ACATTACACAGGCGACGCAT 60.391 50.0 23.09 12.78 0.0 4.73 R
3302 4390 0.093026 GCGCACGACAACACATCTAC 59.907 55.0 0.30 0.00 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.600916 ACCAAAGCGAAGGAGGTGC 60.601 57.895 0.00 0.00 0.00 5.01
192 193 1.302511 GTTCGAGGCCAGGCAGAAA 60.303 57.895 15.19 0.00 0.00 2.52
542 555 2.724273 GGCAAAATGGATGCGGCCT 61.724 57.895 0.00 0.00 44.75 5.19
634 647 5.642063 GGACAGAATCCGAATAAAACAGACA 59.358 40.000 0.00 0.00 37.88 3.41
637 650 8.110860 ACAGAATCCGAATAAAACAGACATTT 57.889 30.769 0.00 0.00 0.00 2.32
671 684 0.881796 GGTGAAGTTGGCCTTACAGC 59.118 55.000 3.32 3.46 32.03 4.40
672 685 1.604604 GTGAAGTTGGCCTTACAGCA 58.395 50.000 3.32 2.03 32.03 4.41
673 686 2.162681 GTGAAGTTGGCCTTACAGCAT 58.837 47.619 3.32 0.00 32.03 3.79
674 687 2.095059 GTGAAGTTGGCCTTACAGCATG 60.095 50.000 3.32 0.00 36.07 4.06
675 688 2.224744 TGAAGTTGGCCTTACAGCATGA 60.225 45.455 3.32 0.00 34.07 3.07
676 689 2.814805 AGTTGGCCTTACAGCATGAT 57.185 45.000 3.32 0.00 39.69 2.45
677 690 2.372264 AGTTGGCCTTACAGCATGATG 58.628 47.619 9.94 9.94 39.69 3.07
678 691 1.406539 GTTGGCCTTACAGCATGATGG 59.593 52.381 16.55 0.00 39.69 3.51
679 692 0.918258 TGGCCTTACAGCATGATGGA 59.082 50.000 16.55 3.03 39.69 3.41
680 693 1.496001 TGGCCTTACAGCATGATGGAT 59.504 47.619 16.55 0.00 39.69 3.41
681 694 1.884579 GGCCTTACAGCATGATGGATG 59.115 52.381 16.55 9.07 39.69 3.51
682 695 1.884579 GCCTTACAGCATGATGGATGG 59.115 52.381 20.97 20.97 39.69 3.51
683 696 2.511659 CCTTACAGCATGATGGATGGG 58.488 52.381 18.24 10.18 39.69 4.00
684 697 1.884579 CTTACAGCATGATGGATGGGC 59.115 52.381 16.55 0.00 39.69 5.36
685 698 0.111061 TACAGCATGATGGATGGGCC 59.889 55.000 16.55 0.00 39.69 5.80
686 699 2.114625 AGCATGATGGATGGGCCG 59.885 61.111 0.00 0.00 40.66 6.13
687 700 2.987547 GCATGATGGATGGGCCGG 60.988 66.667 0.00 0.00 40.66 6.13
688 701 2.838360 CATGATGGATGGGCCGGA 59.162 61.111 5.05 0.00 40.66 5.14
689 702 1.601759 CATGATGGATGGGCCGGAC 60.602 63.158 5.05 0.00 40.66 4.79
690 703 2.833913 ATGATGGATGGGCCGGACC 61.834 63.158 23.70 23.70 40.66 4.46
691 704 3.488569 GATGGATGGGCCGGACCA 61.489 66.667 36.41 36.41 46.24 4.02
692 705 3.020647 ATGGATGGGCCGGACCAA 61.021 61.111 38.01 19.66 45.13 3.67
693 706 2.965716 GATGGATGGGCCGGACCAAG 62.966 65.000 38.01 0.00 45.13 3.61
694 707 3.407967 GGATGGGCCGGACCAAGA 61.408 66.667 38.01 11.38 45.13 3.02
695 708 2.190578 GATGGGCCGGACCAAGAG 59.809 66.667 38.01 0.00 45.13 2.85
769 782 3.680786 GAAACCAAGGCGGCCACC 61.681 66.667 23.09 0.00 39.03 4.61
936 952 1.830836 GGAGATTCCCCTCGAACCC 59.169 63.158 0.00 0.00 34.08 4.11
1072 1559 1.206578 GTGCTGTGCGCGTAACATT 59.793 52.632 15.49 0.00 43.27 2.71
1204 1720 1.065854 CCCTTTCTTCCACATCGCTCT 60.066 52.381 0.00 0.00 0.00 4.09
1226 1742 3.756783 CCCCCTCTCTCCCCGTCT 61.757 72.222 0.00 0.00 0.00 4.18
1251 1767 1.981495 CTCTCCACTCCACCCTTTCTT 59.019 52.381 0.00 0.00 0.00 2.52
1910 2857 0.537188 AACCATTGATCGGCTCGTCT 59.463 50.000 0.00 0.00 0.00 4.18
1977 2926 0.911769 TGACCCGCAGAATCCTGAAT 59.088 50.000 0.00 0.00 43.02 2.57
1978 2927 1.281867 TGACCCGCAGAATCCTGAATT 59.718 47.619 0.00 0.00 43.02 2.17
1979 2928 1.943340 GACCCGCAGAATCCTGAATTC 59.057 52.381 0.00 0.00 43.02 2.17
1980 2929 1.312815 CCCGCAGAATCCTGAATTCC 58.687 55.000 2.27 0.00 44.20 3.01
1981 2930 1.312815 CCGCAGAATCCTGAATTCCC 58.687 55.000 2.27 0.00 44.20 3.97
1982 2931 0.940126 CGCAGAATCCTGAATTCCCG 59.060 55.000 2.27 0.00 44.20 5.14
1983 2932 1.473257 CGCAGAATCCTGAATTCCCGA 60.473 52.381 2.27 0.00 44.20 5.14
2036 2998 3.289128 TGAAGGCTCACACAAGACG 57.711 52.632 0.00 0.00 0.00 4.18
2138 3116 9.231297 TGTTAATTCCTTACTACTGTAGTACGT 57.769 33.333 23.52 10.91 40.74 3.57
2159 3137 6.098017 ACGTAGTATTCCTAGCAGTTTGTTC 58.902 40.000 0.00 0.00 41.94 3.18
2166 3144 2.096218 CCTAGCAGTTTGTTCGCACTTC 60.096 50.000 0.00 0.00 0.00 3.01
2188 3169 4.166144 TCTTTCTTCTTCTTGGGTTGGTCT 59.834 41.667 0.00 0.00 0.00 3.85
2195 3176 0.764890 CTTGGGTTGGTCTGTCAGGA 59.235 55.000 0.00 0.00 0.00 3.86
2304 3308 0.654160 ATGAATGACGAGCATGCGTG 59.346 50.000 13.01 11.40 45.72 5.34
2342 3346 1.224075 GAGTGTGATGCGATCCCATG 58.776 55.000 0.00 0.00 0.00 3.66
2366 3370 1.162800 GCTTGTCCGCATCCATCTCC 61.163 60.000 0.00 0.00 0.00 3.71
2397 3407 2.033065 GTGAGCGCTCATCAATCATCAC 60.033 50.000 39.91 21.41 42.18 3.06
2448 3478 0.544697 GGCCATCTTTCTTACGGGGA 59.455 55.000 0.00 0.00 0.00 4.81
2454 3484 0.613777 CTTTCTTACGGGGAGCTGGT 59.386 55.000 0.00 0.00 0.00 4.00
2455 3485 0.323629 TTTCTTACGGGGAGCTGGTG 59.676 55.000 0.00 0.00 0.00 4.17
2476 3506 2.040412 GGAGGAGGTGAAAGTGATTGGT 59.960 50.000 0.00 0.00 0.00 3.67
2477 3507 3.077359 GAGGAGGTGAAAGTGATTGGTG 58.923 50.000 0.00 0.00 0.00 4.17
2478 3508 2.711009 AGGAGGTGAAAGTGATTGGTGA 59.289 45.455 0.00 0.00 0.00 4.02
2479 3509 3.331889 AGGAGGTGAAAGTGATTGGTGAT 59.668 43.478 0.00 0.00 0.00 3.06
2480 3510 3.441572 GGAGGTGAAAGTGATTGGTGATG 59.558 47.826 0.00 0.00 0.00 3.07
2481 3511 2.821969 AGGTGAAAGTGATTGGTGATGC 59.178 45.455 0.00 0.00 0.00 3.91
2482 3512 2.094545 GGTGAAAGTGATTGGTGATGCC 60.095 50.000 0.00 0.00 37.90 4.40
2483 3513 1.811965 TGAAAGTGATTGGTGATGCCG 59.188 47.619 0.00 0.00 41.21 5.69
2484 3514 1.812571 GAAAGTGATTGGTGATGCCGT 59.187 47.619 0.00 0.00 41.21 5.68
2485 3515 1.909700 AAGTGATTGGTGATGCCGTT 58.090 45.000 0.00 0.00 41.21 4.44
2486 3516 1.909700 AGTGATTGGTGATGCCGTTT 58.090 45.000 0.00 0.00 41.21 3.60
2487 3517 2.238521 AGTGATTGGTGATGCCGTTTT 58.761 42.857 0.00 0.00 41.21 2.43
2488 3518 2.030007 AGTGATTGGTGATGCCGTTTTG 60.030 45.455 0.00 0.00 41.21 2.44
2489 3519 1.336702 TGATTGGTGATGCCGTTTTGC 60.337 47.619 0.00 0.00 41.21 3.68
2490 3520 0.968405 ATTGGTGATGCCGTTTTGCT 59.032 45.000 0.00 0.00 41.21 3.91
2491 3521 0.313672 TTGGTGATGCCGTTTTGCTC 59.686 50.000 0.00 0.00 41.21 4.26
2492 3522 0.537143 TGGTGATGCCGTTTTGCTCT 60.537 50.000 0.00 0.00 41.21 4.09
2493 3523 0.169009 GGTGATGCCGTTTTGCTCTC 59.831 55.000 0.00 0.00 0.00 3.20
2494 3524 1.160137 GTGATGCCGTTTTGCTCTCT 58.840 50.000 0.00 0.00 0.00 3.10
2495 3525 2.346803 GTGATGCCGTTTTGCTCTCTA 58.653 47.619 0.00 0.00 0.00 2.43
2496 3526 2.349886 GTGATGCCGTTTTGCTCTCTAG 59.650 50.000 0.00 0.00 0.00 2.43
2497 3527 2.028112 TGATGCCGTTTTGCTCTCTAGT 60.028 45.455 0.00 0.00 0.00 2.57
2498 3528 3.194755 TGATGCCGTTTTGCTCTCTAGTA 59.805 43.478 0.00 0.00 0.00 1.82
2499 3529 3.232213 TGCCGTTTTGCTCTCTAGTAG 57.768 47.619 0.00 0.00 0.00 2.57
2500 3530 2.561419 TGCCGTTTTGCTCTCTAGTAGT 59.439 45.455 0.00 0.00 0.00 2.73
2527 3563 8.251721 AGTAGTAAATCTGTGGTGATTGTACTC 58.748 37.037 0.00 0.00 36.84 2.59
2528 3564 6.407202 AGTAAATCTGTGGTGATTGTACTCC 58.593 40.000 0.00 0.00 36.84 3.85
2529 3565 3.914426 ATCTGTGGTGATTGTACTCCC 57.086 47.619 0.00 0.00 0.00 4.30
2530 3566 2.902608 TCTGTGGTGATTGTACTCCCT 58.097 47.619 0.00 0.00 0.00 4.20
2531 3567 2.832129 TCTGTGGTGATTGTACTCCCTC 59.168 50.000 0.00 0.00 0.00 4.30
2532 3568 1.906574 TGTGGTGATTGTACTCCCTCC 59.093 52.381 0.00 0.00 0.00 4.30
2533 3569 1.134788 GTGGTGATTGTACTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
2534 3570 1.192428 GGTGATTGTACTCCCTCCGT 58.808 55.000 0.00 0.00 0.00 4.69
2535 3571 1.553704 GGTGATTGTACTCCCTCCGTT 59.446 52.381 0.00 0.00 0.00 4.44
2536 3572 2.418334 GGTGATTGTACTCCCTCCGTTC 60.418 54.545 0.00 0.00 0.00 3.95
2537 3573 1.475280 TGATTGTACTCCCTCCGTTCG 59.525 52.381 0.00 0.00 0.00 3.95
2538 3574 0.822164 ATTGTACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
2539 3575 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
2540 3576 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
2541 3577 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2542 3578 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
2543 3579 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2544 3580 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2545 3581 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2546 3582 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2547 3583 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2548 3584 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2549 3585 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2550 3586 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2551 3587 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
2552 3588 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
2553 3589 3.919804 CCGTTCGGAATTACTTGTCGTAA 59.080 43.478 5.19 0.00 41.97 3.18
2554 3590 4.385447 CCGTTCGGAATTACTTGTCGTAAA 59.615 41.667 5.19 0.00 41.17 2.01
2555 3591 5.107530 CCGTTCGGAATTACTTGTCGTAAAA 60.108 40.000 5.19 0.00 41.17 1.52
2556 3592 6.354080 CGTTCGGAATTACTTGTCGTAAAAA 58.646 36.000 0.00 0.00 41.17 1.94
2557 3593 7.011189 CGTTCGGAATTACTTGTCGTAAAAAT 58.989 34.615 0.00 0.00 41.17 1.82
2558 3594 7.005857 CGTTCGGAATTACTTGTCGTAAAAATG 59.994 37.037 0.00 0.00 41.17 2.32
2559 3595 7.655236 TCGGAATTACTTGTCGTAAAAATGA 57.345 32.000 0.00 0.00 41.17 2.57
2560 3596 8.085720 TCGGAATTACTTGTCGTAAAAATGAA 57.914 30.769 0.00 0.00 41.17 2.57
2561 3597 8.723311 TCGGAATTACTTGTCGTAAAAATGAAT 58.277 29.630 0.00 0.00 41.17 2.57
2562 3598 8.785101 CGGAATTACTTGTCGTAAAAATGAATG 58.215 33.333 0.00 0.00 41.17 2.67
2563 3599 9.620660 GGAATTACTTGTCGTAAAAATGAATGT 57.379 29.630 0.00 0.00 41.17 2.71
2605 3641 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
2606 3642 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
2607 3643 9.958180 TTCTAGATACATCCATTTTCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
2608 3644 9.605275 TCTAGATACATCCATTTTCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
2609 3645 9.388506 CTAGATACATCCATTTTCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
2611 3647 9.739276 AGATACATCCATTTTCAAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
2615 3651 9.696917 ACATCCATTTTCAAGACAAGTAATTTC 57.303 29.630 0.00 0.00 0.00 2.17
2616 3652 8.853345 CATCCATTTTCAAGACAAGTAATTTCG 58.147 33.333 0.00 0.00 0.00 3.46
2617 3653 8.160521 TCCATTTTCAAGACAAGTAATTTCGA 57.839 30.769 0.00 0.00 0.00 3.71
2618 3654 8.625651 TCCATTTTCAAGACAAGTAATTTCGAA 58.374 29.630 0.00 0.00 0.00 3.71
2619 3655 8.690840 CCATTTTCAAGACAAGTAATTTCGAAC 58.309 33.333 0.00 0.00 0.00 3.95
2620 3656 7.886191 TTTTCAAGACAAGTAATTTCGAACG 57.114 32.000 0.00 0.00 0.00 3.95
2621 3657 5.585500 TCAAGACAAGTAATTTCGAACGG 57.415 39.130 0.00 0.00 0.00 4.44
2622 3658 5.291178 TCAAGACAAGTAATTTCGAACGGA 58.709 37.500 0.00 0.00 0.00 4.69
2623 3659 5.404366 TCAAGACAAGTAATTTCGAACGGAG 59.596 40.000 0.00 0.00 0.00 4.63
2624 3660 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
2625 3661 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2626 3662 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2627 3663 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2628 3664 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
2629 3665 4.019174 AGTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
2630 3666 2.955477 ATTTCGAACGGAGGGAGTAC 57.045 50.000 0.00 0.00 0.00 2.73
2631 3667 1.915141 TTTCGAACGGAGGGAGTACT 58.085 50.000 0.00 0.00 0.00 2.73
2666 3706 2.760650 TCTACCACTCCTGCATGTACTG 59.239 50.000 0.00 0.00 0.00 2.74
2755 3801 0.438830 GAAGCCGTACAGCAAGAACG 59.561 55.000 3.48 0.00 36.42 3.95
2778 3833 0.524414 TGTAGCTCGCGCAAGTAGAA 59.476 50.000 8.75 0.00 39.10 2.10
2786 3841 4.537965 CTCGCGCAAGTAGAACATAGTAT 58.462 43.478 8.75 0.00 41.68 2.12
2787 3842 4.928601 TCGCGCAAGTAGAACATAGTATT 58.071 39.130 8.75 0.00 41.68 1.89
2788 3843 6.063640 TCGCGCAAGTAGAACATAGTATTA 57.936 37.500 8.75 0.00 41.68 0.98
2812 3867 5.523916 ACTTGCGCCAGTTTAATATCACTAG 59.476 40.000 8.58 0.00 0.00 2.57
2813 3868 5.018539 TGCGCCAGTTTAATATCACTAGT 57.981 39.130 4.18 0.00 0.00 2.57
2814 3869 6.151663 TGCGCCAGTTTAATATCACTAGTA 57.848 37.500 4.18 0.00 0.00 1.82
2815 3870 5.981315 TGCGCCAGTTTAATATCACTAGTAC 59.019 40.000 4.18 0.00 0.00 2.73
2816 3871 6.183360 TGCGCCAGTTTAATATCACTAGTACT 60.183 38.462 4.18 0.00 0.00 2.73
2817 3872 7.013559 TGCGCCAGTTTAATATCACTAGTACTA 59.986 37.037 4.18 1.89 0.00 1.82
2835 3890 7.513371 AGTACTACTAGTGCTATGGATCAAC 57.487 40.000 5.39 0.00 39.42 3.18
2890 3955 7.289782 AGCTTGTTTAAATAATCCCCATGCATA 59.710 33.333 0.00 0.00 0.00 3.14
2891 3956 8.096414 GCTTGTTTAAATAATCCCCATGCATAT 58.904 33.333 0.00 0.00 0.00 1.78
2920 3989 1.901833 TGTGCTGTAGCCTGATTCTCA 59.098 47.619 0.80 0.00 41.18 3.27
2924 3993 1.478510 CTGTAGCCTGATTCTCACGGT 59.521 52.381 0.00 0.00 0.00 4.83
2937 4006 0.464735 TCACGGTGGACAAAAGTGGG 60.465 55.000 8.50 0.00 33.98 4.61
2938 4007 1.826487 ACGGTGGACAAAAGTGGGC 60.826 57.895 0.00 0.00 0.00 5.36
2940 4009 1.826487 GGTGGACAAAAGTGGGCGT 60.826 57.895 0.00 0.00 0.00 5.68
2965 4034 6.005198 TCCCACATTTACATTTCGGTAAACT 58.995 36.000 0.00 0.00 43.68 2.66
2974 4043 2.033448 CGGTAAACTGGGCAGGCA 59.967 61.111 0.00 0.00 0.00 4.75
3106 4190 4.735369 TGCACTGGGAAAAAGATAAAGGA 58.265 39.130 0.00 0.00 0.00 3.36
3107 4191 4.766891 TGCACTGGGAAAAAGATAAAGGAG 59.233 41.667 0.00 0.00 0.00 3.69
3117 4201 7.396339 GGAAAAAGATAAAGGAGGCTTTTCCTA 59.604 37.037 13.54 0.00 46.90 2.94
3159 4243 7.256225 GGGAGGAGATACGTAATTATTCCAACT 60.256 40.741 15.94 2.86 0.00 3.16
3171 4255 2.708216 TTCCAACTGTCAGCTTGTCA 57.292 45.000 0.00 0.00 0.00 3.58
3185 4269 1.352352 CTTGTCAGGGTCAATGAGGGT 59.648 52.381 0.00 0.00 0.00 4.34
3210 4298 0.318699 GCCTTCGCCTTTGAACAACC 60.319 55.000 0.00 0.00 0.00 3.77
3211 4299 0.040425 CCTTCGCCTTTGAACAACCG 60.040 55.000 0.00 0.00 0.00 4.44
3212 4300 0.040425 CTTCGCCTTTGAACAACCGG 60.040 55.000 0.00 0.00 0.00 5.28
3213 4301 0.464013 TTCGCCTTTGAACAACCGGA 60.464 50.000 9.46 0.00 0.00 5.14
3214 4302 0.464013 TCGCCTTTGAACAACCGGAA 60.464 50.000 9.46 0.00 0.00 4.30
3215 4303 0.040425 CGCCTTTGAACAACCGGAAG 60.040 55.000 9.46 1.51 0.00 3.46
3216 4304 1.029681 GCCTTTGAACAACCGGAAGT 58.970 50.000 9.46 2.32 0.00 3.01
3217 4305 1.269051 GCCTTTGAACAACCGGAAGTG 60.269 52.381 9.46 5.64 0.00 3.16
3218 4306 1.269051 CCTTTGAACAACCGGAAGTGC 60.269 52.381 9.46 5.09 0.00 4.40
3219 4307 1.676006 CTTTGAACAACCGGAAGTGCT 59.324 47.619 9.46 0.00 0.00 4.40
3220 4308 1.021202 TTGAACAACCGGAAGTGCTG 58.979 50.000 9.46 0.00 0.00 4.41
3221 4309 0.107410 TGAACAACCGGAAGTGCTGT 60.107 50.000 9.46 0.00 0.00 4.40
3222 4310 0.307760 GAACAACCGGAAGTGCTGTG 59.692 55.000 9.46 0.00 0.00 3.66
3223 4311 1.724582 AACAACCGGAAGTGCTGTGC 61.725 55.000 9.46 0.00 0.00 4.57
3224 4312 2.186160 CAACCGGAAGTGCTGTGCA 61.186 57.895 9.46 0.00 35.60 4.57
3233 4321 2.738139 TGCTGTGCACACGATCCG 60.738 61.111 17.42 6.27 31.71 4.18
3234 4322 2.738521 GCTGTGCACACGATCCGT 60.739 61.111 17.42 0.00 42.36 4.69
3250 4338 3.577229 GTGCATGCACGATCCACA 58.423 55.556 33.20 0.00 37.19 4.17
3251 4339 1.135315 GTGCATGCACGATCCACAC 59.865 57.895 33.20 9.23 37.19 3.82
3252 4340 1.302351 TGCATGCACGATCCACACA 60.302 52.632 18.46 0.00 0.00 3.72
3253 4341 1.135315 GCATGCACGATCCACACAC 59.865 57.895 14.21 0.00 0.00 3.82
3254 4342 1.421093 CATGCACGATCCACACACG 59.579 57.895 0.00 0.00 0.00 4.49
3255 4343 1.013524 CATGCACGATCCACACACGA 61.014 55.000 0.00 0.00 0.00 4.35
3256 4344 1.014044 ATGCACGATCCACACACGAC 61.014 55.000 0.00 0.00 0.00 4.34
3257 4345 1.663388 GCACGATCCACACACGACA 60.663 57.895 0.00 0.00 0.00 4.35
3258 4346 1.014044 GCACGATCCACACACGACAT 61.014 55.000 0.00 0.00 0.00 3.06
3259 4347 0.715551 CACGATCCACACACGACATG 59.284 55.000 0.00 0.00 0.00 3.21
3260 4348 0.601057 ACGATCCACACACGACATGA 59.399 50.000 0.00 0.00 0.00 3.07
3261 4349 1.204704 ACGATCCACACACGACATGAT 59.795 47.619 0.00 0.00 0.00 2.45
3262 4350 2.270923 CGATCCACACACGACATGATT 58.729 47.619 0.00 0.00 0.00 2.57
3263 4351 2.672874 CGATCCACACACGACATGATTT 59.327 45.455 0.00 0.00 0.00 2.17
3264 4352 3.484065 CGATCCACACACGACATGATTTG 60.484 47.826 0.00 0.00 0.00 2.32
3265 4353 2.150390 TCCACACACGACATGATTTGG 58.850 47.619 0.00 0.00 0.00 3.28
3266 4354 1.199789 CCACACACGACATGATTTGGG 59.800 52.381 0.00 0.00 0.00 4.12
3267 4355 0.881118 ACACACGACATGATTTGGGC 59.119 50.000 0.00 0.00 0.00 5.36
3268 4356 0.171007 CACACGACATGATTTGGGCC 59.829 55.000 0.00 0.00 0.00 5.80
3269 4357 0.251121 ACACGACATGATTTGGGCCA 60.251 50.000 0.00 0.00 0.00 5.36
3270 4358 0.171007 CACGACATGATTTGGGCCAC 59.829 55.000 5.23 0.00 0.00 5.01
3271 4359 0.251121 ACGACATGATTTGGGCCACA 60.251 50.000 5.23 0.00 0.00 4.17
3272 4360 0.452987 CGACATGATTTGGGCCACAG 59.547 55.000 5.23 0.00 0.00 3.66
3273 4361 1.838112 GACATGATTTGGGCCACAGA 58.162 50.000 5.23 0.00 0.00 3.41
3274 4362 1.747355 GACATGATTTGGGCCACAGAG 59.253 52.381 5.23 0.86 0.00 3.35
3275 4363 1.355381 ACATGATTTGGGCCACAGAGA 59.645 47.619 5.23 0.00 0.00 3.10
3276 4364 2.024655 ACATGATTTGGGCCACAGAGAT 60.025 45.455 5.23 0.00 0.00 2.75
3277 4365 2.905415 TGATTTGGGCCACAGAGATT 57.095 45.000 5.23 0.00 0.00 2.40
3278 4366 3.173953 TGATTTGGGCCACAGAGATTT 57.826 42.857 5.23 0.00 0.00 2.17
3279 4367 4.314522 TGATTTGGGCCACAGAGATTTA 57.685 40.909 5.23 0.00 0.00 1.40
3280 4368 4.016444 TGATTTGGGCCACAGAGATTTAC 58.984 43.478 5.23 0.00 0.00 2.01
3281 4369 2.107950 TTGGGCCACAGAGATTTACG 57.892 50.000 5.23 0.00 0.00 3.18
3282 4370 1.271856 TGGGCCACAGAGATTTACGA 58.728 50.000 0.00 0.00 0.00 3.43
3283 4371 1.626321 TGGGCCACAGAGATTTACGAA 59.374 47.619 0.00 0.00 0.00 3.85
3284 4372 2.039216 TGGGCCACAGAGATTTACGAAA 59.961 45.455 0.00 0.00 0.00 3.46
3285 4373 2.418976 GGGCCACAGAGATTTACGAAAC 59.581 50.000 4.39 0.00 0.00 2.78
3286 4374 2.093783 GGCCACAGAGATTTACGAAACG 59.906 50.000 0.00 0.00 0.00 3.60
3287 4375 2.991190 GCCACAGAGATTTACGAAACGA 59.009 45.455 0.00 0.00 0.00 3.85
3288 4376 3.060895 GCCACAGAGATTTACGAAACGAG 59.939 47.826 0.00 0.00 0.00 4.18
3289 4377 3.612860 CCACAGAGATTTACGAAACGAGG 59.387 47.826 0.00 0.00 0.00 4.63
3290 4378 3.060895 CACAGAGATTTACGAAACGAGGC 59.939 47.826 0.00 0.00 0.00 4.70
3291 4379 3.250744 CAGAGATTTACGAAACGAGGCA 58.749 45.455 0.00 0.00 0.00 4.75
3292 4380 3.678072 CAGAGATTTACGAAACGAGGCAA 59.322 43.478 0.00 0.00 0.00 4.52
3293 4381 3.678548 AGAGATTTACGAAACGAGGCAAC 59.321 43.478 0.00 0.00 0.00 4.17
3294 4382 2.740447 AGATTTACGAAACGAGGCAACC 59.260 45.455 0.00 0.00 37.17 3.77
3295 4383 1.228533 TTTACGAAACGAGGCAACCC 58.771 50.000 0.00 0.00 37.17 4.11
3296 4384 0.106335 TTACGAAACGAGGCAACCCA 59.894 50.000 0.00 0.00 37.17 4.51
3297 4385 0.106335 TACGAAACGAGGCAACCCAA 59.894 50.000 0.00 0.00 37.17 4.12
3298 4386 1.164041 ACGAAACGAGGCAACCCAAG 61.164 55.000 0.00 0.00 37.17 3.61
3299 4387 1.852067 CGAAACGAGGCAACCCAAGG 61.852 60.000 0.00 0.00 37.17 3.61
3300 4388 1.524008 GAAACGAGGCAACCCAAGGG 61.524 60.000 2.91 2.91 42.03 3.95
3312 4400 2.879103 CCCAAGGGTGTAGATGTGTT 57.121 50.000 0.00 0.00 0.00 3.32
3313 4401 2.436417 CCCAAGGGTGTAGATGTGTTG 58.564 52.381 0.00 0.00 0.00 3.33
3314 4402 2.224769 CCCAAGGGTGTAGATGTGTTGT 60.225 50.000 0.00 0.00 0.00 3.32
3315 4403 3.074412 CCAAGGGTGTAGATGTGTTGTC 58.926 50.000 0.00 0.00 0.00 3.18
3316 4404 2.736721 CAAGGGTGTAGATGTGTTGTCG 59.263 50.000 0.00 0.00 0.00 4.35
3317 4405 1.968493 AGGGTGTAGATGTGTTGTCGT 59.032 47.619 0.00 0.00 0.00 4.34
3318 4406 2.066262 GGGTGTAGATGTGTTGTCGTG 58.934 52.381 0.00 0.00 0.00 4.35
3319 4407 1.459592 GGTGTAGATGTGTTGTCGTGC 59.540 52.381 0.00 0.00 0.00 5.34
3320 4408 1.124297 GTGTAGATGTGTTGTCGTGCG 59.876 52.381 0.00 0.00 0.00 5.34
3321 4409 0.093026 GTAGATGTGTTGTCGTGCGC 59.907 55.000 0.00 0.00 0.00 6.09
3322 4410 0.319125 TAGATGTGTTGTCGTGCGCA 60.319 50.000 5.66 5.66 0.00 6.09
3323 4411 1.154599 GATGTGTTGTCGTGCGCAG 60.155 57.895 12.22 5.26 0.00 5.18
3324 4412 1.556591 GATGTGTTGTCGTGCGCAGA 61.557 55.000 12.22 8.04 0.00 4.26
3325 4413 0.950555 ATGTGTTGTCGTGCGCAGAT 60.951 50.000 12.22 0.00 0.00 2.90
3326 4414 1.130613 GTGTTGTCGTGCGCAGATC 59.869 57.895 12.22 4.29 0.00 2.75
3327 4415 2.371923 TGTTGTCGTGCGCAGATCG 61.372 57.895 12.22 12.20 42.12 3.69
3328 4416 2.049526 TTGTCGTGCGCAGATCGT 60.050 55.556 12.22 0.00 41.07 3.73
3329 4417 2.371923 TTGTCGTGCGCAGATCGTG 61.372 57.895 12.22 0.00 41.07 4.35
3343 4431 5.334435 CAGATCGTGCATGAATTTATCGT 57.666 39.130 13.65 0.00 0.00 3.73
3344 4432 5.135330 CAGATCGTGCATGAATTTATCGTG 58.865 41.667 13.65 2.83 46.09 4.35
3345 4433 4.811024 AGATCGTGCATGAATTTATCGTGT 59.189 37.500 13.65 0.00 45.27 4.49
3346 4434 4.257536 TCGTGCATGAATTTATCGTGTG 57.742 40.909 6.04 0.00 45.27 3.82
3347 4435 3.682377 TCGTGCATGAATTTATCGTGTGT 59.318 39.130 6.04 0.00 45.27 3.72
3348 4436 3.780279 CGTGCATGAATTTATCGTGTGTG 59.220 43.478 0.00 0.00 45.27 3.82
3349 4437 4.668941 CGTGCATGAATTTATCGTGTGTGT 60.669 41.667 0.00 0.00 45.27 3.72
3350 4438 5.445275 CGTGCATGAATTTATCGTGTGTGTA 60.445 40.000 0.00 0.00 45.27 2.90
3351 4439 5.959527 GTGCATGAATTTATCGTGTGTGTAG 59.040 40.000 0.00 0.00 45.27 2.74
3352 4440 4.963953 GCATGAATTTATCGTGTGTGTAGC 59.036 41.667 0.00 0.00 45.27 3.58
3353 4441 5.447144 GCATGAATTTATCGTGTGTGTAGCA 60.447 40.000 0.00 0.00 45.27 3.49
3354 4442 5.778161 TGAATTTATCGTGTGTGTAGCAG 57.222 39.130 0.00 0.00 0.00 4.24
3355 4443 5.234752 TGAATTTATCGTGTGTGTAGCAGT 58.765 37.500 0.00 0.00 0.00 4.40
3356 4444 5.120053 TGAATTTATCGTGTGTGTAGCAGTG 59.880 40.000 0.00 0.00 0.00 3.66
3357 4445 1.990799 TATCGTGTGTGTAGCAGTGC 58.009 50.000 7.13 7.13 0.00 4.40
3358 4446 0.318441 ATCGTGTGTGTAGCAGTGCT 59.682 50.000 23.44 23.44 43.41 4.40
3359 4447 0.318699 TCGTGTGTGTAGCAGTGCTC 60.319 55.000 23.64 13.85 40.44 4.26
3360 4448 0.319040 CGTGTGTGTAGCAGTGCTCT 60.319 55.000 23.64 0.41 40.44 4.09
3361 4449 1.869754 CGTGTGTGTAGCAGTGCTCTT 60.870 52.381 23.64 0.00 40.44 2.85
3362 4450 1.528586 GTGTGTGTAGCAGTGCTCTTG 59.471 52.381 23.64 0.00 40.44 3.02
3363 4451 1.412343 TGTGTGTAGCAGTGCTCTTGA 59.588 47.619 23.64 0.00 40.44 3.02
3364 4452 2.158971 TGTGTGTAGCAGTGCTCTTGAA 60.159 45.455 23.64 0.00 40.44 2.69
3365 4453 2.221981 GTGTGTAGCAGTGCTCTTGAAC 59.778 50.000 23.64 14.52 40.44 3.18
3366 4454 2.158971 TGTGTAGCAGTGCTCTTGAACA 60.159 45.455 23.64 17.20 40.44 3.18
3367 4455 2.872245 GTGTAGCAGTGCTCTTGAACAA 59.128 45.455 23.64 0.00 40.44 2.83
3368 4456 2.872245 TGTAGCAGTGCTCTTGAACAAC 59.128 45.455 23.64 12.17 40.44 3.32
3411 4499 2.295909 TCGCAACTGCCTTTAATTGCTT 59.704 40.909 7.42 0.00 44.18 3.91
3494 4582 1.215382 CTCGGTCGTCAGCATTGGA 59.785 57.895 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.249535 CGCTCATGATCGCAAGGGG 61.250 63.158 5.96 0.00 38.47 4.79
307 312 4.263025 GGCCTCCAAAATGAATGGTTTCTT 60.263 41.667 0.00 0.00 39.09 2.52
371 384 3.737850 CCAGCCTCCAGAATGAATAGTC 58.262 50.000 0.00 0.00 39.69 2.59
481 494 2.888212 TCAAATGCCAAGCCCTAGTTT 58.112 42.857 0.00 0.00 0.00 2.66
622 635 6.894682 ACCCCAAACAAATGTCTGTTTTATT 58.105 32.000 0.00 0.00 45.10 1.40
624 637 5.450688 CGACCCCAAACAAATGTCTGTTTTA 60.451 40.000 0.00 0.00 45.10 1.52
634 647 2.648454 GCGCGACCCCAAACAAAT 59.352 55.556 12.10 0.00 0.00 2.32
671 684 1.601759 GTCCGGCCCATCCATCATG 60.602 63.158 0.00 0.00 34.01 3.07
672 685 2.833913 GGTCCGGCCCATCCATCAT 61.834 63.158 0.00 0.00 34.01 2.45
673 686 3.488569 GGTCCGGCCCATCCATCA 61.489 66.667 0.00 0.00 34.01 3.07
674 687 2.965716 CTTGGTCCGGCCCATCCATC 62.966 65.000 4.33 0.00 33.60 3.51
675 688 3.020647 TTGGTCCGGCCCATCCAT 61.021 61.111 4.33 0.00 33.60 3.41
676 689 3.727258 CTTGGTCCGGCCCATCCA 61.727 66.667 4.33 1.34 33.60 3.41
677 690 3.406595 CTCTTGGTCCGGCCCATCC 62.407 68.421 4.33 0.00 33.60 3.51
678 691 1.910580 TTCTCTTGGTCCGGCCCATC 61.911 60.000 4.33 0.00 33.60 3.51
679 692 1.915078 CTTCTCTTGGTCCGGCCCAT 61.915 60.000 4.33 0.00 33.60 4.00
680 693 2.528127 TTCTCTTGGTCCGGCCCA 60.528 61.111 0.00 0.00 36.04 5.36
681 694 2.245438 CTCTTCTCTTGGTCCGGCCC 62.245 65.000 11.72 3.08 36.04 5.80
682 695 1.219393 CTCTTCTCTTGGTCCGGCC 59.781 63.158 0.00 1.41 37.90 6.13
683 696 1.219393 CCTCTTCTCTTGGTCCGGC 59.781 63.158 0.00 0.00 0.00 6.13
684 697 1.617947 CCCCTCTTCTCTTGGTCCGG 61.618 65.000 0.00 0.00 0.00 5.14
685 698 0.614979 TCCCCTCTTCTCTTGGTCCG 60.615 60.000 0.00 0.00 0.00 4.79
686 699 1.279558 GTTCCCCTCTTCTCTTGGTCC 59.720 57.143 0.00 0.00 0.00 4.46
687 700 1.978580 TGTTCCCCTCTTCTCTTGGTC 59.021 52.381 0.00 0.00 0.00 4.02
688 701 1.700186 GTGTTCCCCTCTTCTCTTGGT 59.300 52.381 0.00 0.00 0.00 3.67
689 702 1.699634 TGTGTTCCCCTCTTCTCTTGG 59.300 52.381 0.00 0.00 0.00 3.61
690 703 2.634940 TCTGTGTTCCCCTCTTCTCTTG 59.365 50.000 0.00 0.00 0.00 3.02
691 704 2.903135 CTCTGTGTTCCCCTCTTCTCTT 59.097 50.000 0.00 0.00 0.00 2.85
692 705 2.534990 CTCTGTGTTCCCCTCTTCTCT 58.465 52.381 0.00 0.00 0.00 3.10
693 706 1.066502 GCTCTGTGTTCCCCTCTTCTC 60.067 57.143 0.00 0.00 0.00 2.87
694 707 0.980423 GCTCTGTGTTCCCCTCTTCT 59.020 55.000 0.00 0.00 0.00 2.85
695 708 0.687354 TGCTCTGTGTTCCCCTCTTC 59.313 55.000 0.00 0.00 0.00 2.87
842 858 1.529309 GGATTGGGAGGTCAGCTCC 59.471 63.158 15.17 15.17 40.15 4.70
936 952 3.663995 TGATTTGCATGTGGAGTTTGG 57.336 42.857 0.00 0.00 0.00 3.28
1020 1036 0.034896 ACATCGGGTTCTCTTTGCGT 59.965 50.000 0.00 0.00 0.00 5.24
1021 1037 0.443869 CACATCGGGTTCTCTTTGCG 59.556 55.000 0.00 0.00 0.00 4.85
1022 1038 0.169009 GCACATCGGGTTCTCTTTGC 59.831 55.000 0.00 0.00 0.00 3.68
1023 1039 0.443869 CGCACATCGGGTTCTCTTTG 59.556 55.000 0.00 0.00 33.78 2.77
1072 1559 1.805871 CGCAAGAGCAAAAGGCCAAAA 60.806 47.619 5.01 0.00 46.50 2.44
1226 1742 0.836400 GGGTGGAGTGGAGAGTGGAA 60.836 60.000 0.00 0.00 0.00 3.53
1251 1767 3.838271 GGGAGAGCATGCGACGGA 61.838 66.667 13.01 0.00 0.00 4.69
1312 1828 1.787847 CGTGATGACCTTGCCGAAC 59.212 57.895 0.00 0.00 0.00 3.95
1744 2269 4.514585 TGGTGGTGGTGGTGGTGC 62.515 66.667 0.00 0.00 0.00 5.01
1977 2926 1.032794 CCGTCTCATCTCATCGGGAA 58.967 55.000 0.00 0.00 37.92 3.97
1978 2927 2.720659 CCGTCTCATCTCATCGGGA 58.279 57.895 0.00 0.00 37.92 5.14
1980 2929 1.000827 CTTCCCGTCTCATCTCATCGG 60.001 57.143 0.00 0.00 40.72 4.18
1981 2930 1.000827 CCTTCCCGTCTCATCTCATCG 60.001 57.143 0.00 0.00 0.00 3.84
1982 2931 1.270041 GCCTTCCCGTCTCATCTCATC 60.270 57.143 0.00 0.00 0.00 2.92
1983 2932 0.755686 GCCTTCCCGTCTCATCTCAT 59.244 55.000 0.00 0.00 0.00 2.90
2036 2998 4.324267 TCGAATTCTCCTCCTTTTTCCAC 58.676 43.478 3.52 0.00 0.00 4.02
2104 3069 7.982354 CAGTAGTAAGGAATTAACAAGAGGGAG 59.018 40.741 0.00 0.00 0.00 4.30
2136 3114 5.229469 CGAACAAACTGCTAGGAATACTACG 59.771 44.000 0.00 0.00 0.00 3.51
2137 3115 5.005490 GCGAACAAACTGCTAGGAATACTAC 59.995 44.000 0.00 0.00 0.00 2.73
2138 3116 5.107133 GCGAACAAACTGCTAGGAATACTA 58.893 41.667 0.00 0.00 0.00 1.82
2139 3117 3.933332 GCGAACAAACTGCTAGGAATACT 59.067 43.478 0.00 0.00 0.00 2.12
2159 3137 3.058639 CCCAAGAAGAAGAAAGAAGTGCG 60.059 47.826 0.00 0.00 0.00 5.34
2166 3144 4.276926 CAGACCAACCCAAGAAGAAGAAAG 59.723 45.833 0.00 0.00 0.00 2.62
2188 3169 3.381983 AGGCGACGCATCCTGACA 61.382 61.111 23.09 0.00 0.00 3.58
2195 3176 0.391130 ACATTACACAGGCGACGCAT 60.391 50.000 23.09 12.78 0.00 4.73
2265 3256 4.022603 CATACACAATGGGAATGGGACAA 58.977 43.478 0.00 0.00 34.80 3.18
2304 3308 3.122297 CTCATCGGAGTCATGAAAGCTC 58.878 50.000 0.00 0.00 36.36 4.09
2366 3370 1.347817 GAGCGCTCACTTCCAAGACG 61.348 60.000 31.91 0.00 0.00 4.18
2448 3478 0.768221 TTTCACCTCCTCCACCAGCT 60.768 55.000 0.00 0.00 0.00 4.24
2454 3484 2.040278 CCAATCACTTTCACCTCCTCCA 59.960 50.000 0.00 0.00 0.00 3.86
2455 3485 2.040412 ACCAATCACTTTCACCTCCTCC 59.960 50.000 0.00 0.00 0.00 4.30
2476 3506 2.028112 ACTAGAGAGCAAAACGGCATCA 60.028 45.455 0.00 0.00 35.83 3.07
2477 3507 2.622436 ACTAGAGAGCAAAACGGCATC 58.378 47.619 0.00 0.00 35.83 3.91
2478 3508 2.770164 ACTAGAGAGCAAAACGGCAT 57.230 45.000 0.00 0.00 35.83 4.40
2479 3509 2.561419 ACTACTAGAGAGCAAAACGGCA 59.439 45.455 0.00 0.00 35.83 5.69
2480 3510 3.233684 ACTACTAGAGAGCAAAACGGC 57.766 47.619 0.00 0.00 0.00 5.68
2481 3511 5.564048 ACTACTACTAGAGAGCAAAACGG 57.436 43.478 0.00 0.00 0.00 4.44
2482 3512 7.306205 ACTACTACTACTAGAGAGCAAAACG 57.694 40.000 0.00 0.00 0.00 3.60
2487 3517 9.767228 CAGATTTACTACTACTACTAGAGAGCA 57.233 37.037 0.00 0.00 0.00 4.26
2488 3518 9.768662 ACAGATTTACTACTACTACTAGAGAGC 57.231 37.037 0.00 0.00 0.00 4.09
2491 3521 9.835389 ACCACAGATTTACTACTACTACTAGAG 57.165 37.037 0.00 0.00 0.00 2.43
2492 3522 9.610705 CACCACAGATTTACTACTACTACTAGA 57.389 37.037 0.00 0.00 0.00 2.43
2493 3523 9.610705 TCACCACAGATTTACTACTACTACTAG 57.389 37.037 0.00 0.00 0.00 2.57
2495 3525 9.476928 AATCACCACAGATTTACTACTACTACT 57.523 33.333 0.00 0.00 34.70 2.57
2496 3526 9.517609 CAATCACCACAGATTTACTACTACTAC 57.482 37.037 0.00 0.00 36.13 2.73
2497 3527 9.251440 ACAATCACCACAGATTTACTACTACTA 57.749 33.333 0.00 0.00 36.13 1.82
2498 3528 8.135382 ACAATCACCACAGATTTACTACTACT 57.865 34.615 0.00 0.00 36.13 2.57
2499 3529 9.298774 GTACAATCACCACAGATTTACTACTAC 57.701 37.037 0.00 0.00 36.13 2.73
2500 3530 9.251440 AGTACAATCACCACAGATTTACTACTA 57.749 33.333 0.00 0.00 36.13 1.82
2527 3563 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2528 3564 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2529 3565 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2530 3566 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
2531 3567 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
2532 3568 5.499268 TTTACGACAAGTAATTCCGAACG 57.501 39.130 0.00 0.00 44.03 3.95
2533 3569 8.011106 TCATTTTTACGACAAGTAATTCCGAAC 58.989 33.333 0.00 0.00 44.03 3.95
2534 3570 8.085720 TCATTTTTACGACAAGTAATTCCGAA 57.914 30.769 0.00 0.00 44.03 4.30
2535 3571 7.655236 TCATTTTTACGACAAGTAATTCCGA 57.345 32.000 0.00 0.00 44.03 4.55
2536 3572 8.785101 CATTCATTTTTACGACAAGTAATTCCG 58.215 33.333 0.00 0.00 44.03 4.30
2537 3573 9.620660 ACATTCATTTTTACGACAAGTAATTCC 57.379 29.630 0.00 0.00 44.03 3.01
2579 3615 9.606631 GTCTTGAAAATGGATGTATCTAGAACT 57.393 33.333 0.00 0.00 0.00 3.01
2580 3616 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
2581 3617 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
2582 3618 9.605275 CTTGTCTTGAAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
2583 3619 9.388506 ACTTGTCTTGAAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
2585 3621 9.739276 TTACTTGTCTTGAAAATGGATGTATCT 57.261 29.630 0.00 0.00 0.00 1.98
2589 3625 9.696917 GAAATTACTTGTCTTGAAAATGGATGT 57.303 29.630 0.00 0.00 0.00 3.06
2590 3626 8.853345 CGAAATTACTTGTCTTGAAAATGGATG 58.147 33.333 0.00 0.00 0.00 3.51
2591 3627 8.792633 TCGAAATTACTTGTCTTGAAAATGGAT 58.207 29.630 0.00 0.00 0.00 3.41
2592 3628 8.160521 TCGAAATTACTTGTCTTGAAAATGGA 57.839 30.769 0.00 0.00 0.00 3.41
2593 3629 8.690840 GTTCGAAATTACTTGTCTTGAAAATGG 58.309 33.333 0.00 0.00 0.00 3.16
2594 3630 8.409690 CGTTCGAAATTACTTGTCTTGAAAATG 58.590 33.333 0.00 0.00 0.00 2.32
2595 3631 7.589954 CCGTTCGAAATTACTTGTCTTGAAAAT 59.410 33.333 0.00 0.00 0.00 1.82
2596 3632 6.908284 CCGTTCGAAATTACTTGTCTTGAAAA 59.092 34.615 0.00 0.00 0.00 2.29
2597 3633 6.258287 TCCGTTCGAAATTACTTGTCTTGAAA 59.742 34.615 0.00 0.00 0.00 2.69
2598 3634 5.754406 TCCGTTCGAAATTACTTGTCTTGAA 59.246 36.000 0.00 0.00 0.00 2.69
2599 3635 5.291178 TCCGTTCGAAATTACTTGTCTTGA 58.709 37.500 0.00 0.00 0.00 3.02
2600 3636 5.389516 CCTCCGTTCGAAATTACTTGTCTTG 60.390 44.000 0.00 0.00 0.00 3.02
2601 3637 4.689345 CCTCCGTTCGAAATTACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
2602 3638 4.243270 CCTCCGTTCGAAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
2603 3639 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2604 3640 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2605 3641 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2606 3642 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2607 3643 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2608 3644 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2609 3645 4.019174 AGTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
2610 3646 2.830321 AGTACTCCCTCCGTTCGAAATT 59.170 45.455 0.00 0.00 0.00 1.82
2611 3647 2.454538 AGTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
2612 3648 1.915141 AGTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
2613 3649 1.542915 CAAGTACTCCCTCCGTTCGAA 59.457 52.381 0.00 0.00 0.00 3.71
2614 3650 1.171308 CAAGTACTCCCTCCGTTCGA 58.829 55.000 0.00 0.00 0.00 3.71
2615 3651 0.458025 GCAAGTACTCCCTCCGTTCG 60.458 60.000 0.00 0.00 0.00 3.95
2616 3652 0.606604 TGCAAGTACTCCCTCCGTTC 59.393 55.000 0.00 0.00 0.00 3.95
2617 3653 1.053424 TTGCAAGTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
2618 3654 1.053424 TTTGCAAGTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
2619 3655 2.178912 TTTTGCAAGTACTCCCTCCG 57.821 50.000 0.00 0.00 0.00 4.63
2620 3656 3.826729 ACATTTTTGCAAGTACTCCCTCC 59.173 43.478 0.00 0.00 0.00 4.30
2621 3657 5.705905 AGTACATTTTTGCAAGTACTCCCTC 59.294 40.000 18.51 0.00 42.38 4.30
2622 3658 5.631119 AGTACATTTTTGCAAGTACTCCCT 58.369 37.500 18.51 3.08 42.38 4.20
2623 3659 5.959618 AGTACATTTTTGCAAGTACTCCC 57.040 39.130 18.51 0.82 42.38 4.30
2626 3662 7.172703 GTGGTAGAGTACATTTTTGCAAGTACT 59.827 37.037 22.27 22.27 46.99 2.73
2627 3663 7.172703 AGTGGTAGAGTACATTTTTGCAAGTAC 59.827 37.037 15.36 15.36 37.65 2.73
2628 3664 7.221450 AGTGGTAGAGTACATTTTTGCAAGTA 58.779 34.615 0.00 0.00 0.00 2.24
2629 3665 6.062095 AGTGGTAGAGTACATTTTTGCAAGT 58.938 36.000 0.00 0.00 0.00 3.16
2630 3666 6.348540 GGAGTGGTAGAGTACATTTTTGCAAG 60.349 42.308 0.00 0.00 0.00 4.01
2631 3667 5.472137 GGAGTGGTAGAGTACATTTTTGCAA 59.528 40.000 0.00 0.00 0.00 4.08
2666 3706 2.453080 TCCGTGCGACGATAATGTAAC 58.547 47.619 0.00 0.00 46.05 2.50
2715 3761 7.180408 GGCTTCCATCCAGTTAATACTCCTATA 59.820 40.741 0.00 0.00 30.26 1.31
2716 3762 6.013293 GGCTTCCATCCAGTTAATACTCCTAT 60.013 42.308 0.00 0.00 30.26 2.57
2778 3833 4.402056 ACTGGCGCAAGTAATACTATGT 57.598 40.909 17.95 0.00 41.68 2.29
2786 3841 5.878116 AGTGATATTAAACTGGCGCAAGTAA 59.122 36.000 19.94 10.50 41.68 2.24
2787 3842 5.424757 AGTGATATTAAACTGGCGCAAGTA 58.575 37.500 19.94 2.42 41.68 2.24
2788 3843 4.261801 AGTGATATTAAACTGGCGCAAGT 58.738 39.130 12.94 12.94 41.68 3.16
2812 3867 7.228906 TCAGTTGATCCATAGCACTAGTAGTAC 59.771 40.741 1.57 0.00 0.00 2.73
2813 3868 7.287810 TCAGTTGATCCATAGCACTAGTAGTA 58.712 38.462 1.57 0.00 0.00 1.82
2814 3869 6.129874 TCAGTTGATCCATAGCACTAGTAGT 58.870 40.000 0.00 0.00 0.00 2.73
2815 3870 6.641169 TCAGTTGATCCATAGCACTAGTAG 57.359 41.667 0.00 0.00 0.00 2.57
2816 3871 7.603180 AATCAGTTGATCCATAGCACTAGTA 57.397 36.000 0.00 0.00 32.75 1.82
2817 3872 6.491714 AATCAGTTGATCCATAGCACTAGT 57.508 37.500 0.00 0.00 32.75 2.57
2835 3890 7.705325 ACAAGTACTGCTACGGTAATTAATCAG 59.295 37.037 0.00 0.00 32.80 2.90
2890 3955 0.955428 CTACAGCACAACCCACGCAT 60.955 55.000 0.00 0.00 0.00 4.73
2891 3956 1.596752 CTACAGCACAACCCACGCA 60.597 57.895 0.00 0.00 0.00 5.24
2920 3989 1.826487 GCCCACTTTTGTCCACCGT 60.826 57.895 0.00 0.00 0.00 4.83
2924 3993 1.104577 GGAACGCCCACTTTTGTCCA 61.105 55.000 0.00 0.00 34.14 4.02
2937 4006 3.168193 CGAAATGTAAATGTGGGAACGC 58.832 45.455 0.00 0.00 42.66 4.84
2938 4007 3.189702 ACCGAAATGTAAATGTGGGAACG 59.810 43.478 0.00 0.00 0.00 3.95
2940 4009 6.490721 AGTTTACCGAAATGTAAATGTGGGAA 59.509 34.615 0.00 0.00 41.34 3.97
2965 4034 1.832167 GGTGAAAAGTGCCTGCCCA 60.832 57.895 0.00 0.00 0.00 5.36
2974 4043 3.387699 CCAAAAGGATGGTGGTGAAAAGT 59.612 43.478 0.00 0.00 35.65 2.66
3073 4157 1.211212 TCCCAGTGCATTGATGAGGAG 59.789 52.381 11.31 0.00 0.00 3.69
3135 4219 8.142551 ACAGTTGGAATAATTACGTATCTCCTC 58.857 37.037 0.00 0.00 0.00 3.71
3136 4220 8.019656 ACAGTTGGAATAATTACGTATCTCCT 57.980 34.615 0.00 0.00 0.00 3.69
3137 4221 7.924412 TGACAGTTGGAATAATTACGTATCTCC 59.076 37.037 0.00 0.00 0.00 3.71
3139 4223 7.438459 GCTGACAGTTGGAATAATTACGTATCT 59.562 37.037 3.99 0.00 0.00 1.98
3140 4224 7.438459 AGCTGACAGTTGGAATAATTACGTATC 59.562 37.037 3.99 0.00 0.00 2.24
3141 4225 7.272978 AGCTGACAGTTGGAATAATTACGTAT 58.727 34.615 3.99 0.00 0.00 3.06
3142 4226 6.636705 AGCTGACAGTTGGAATAATTACGTA 58.363 36.000 3.99 0.00 0.00 3.57
3144 4228 6.128282 ACAAGCTGACAGTTGGAATAATTACG 60.128 38.462 16.80 0.00 0.00 3.18
3145 4229 7.094805 TGACAAGCTGACAGTTGGAATAATTAC 60.095 37.037 16.80 0.00 0.00 1.89
3159 4243 0.836606 TTGACCCTGACAAGCTGACA 59.163 50.000 0.00 0.00 0.00 3.58
3171 4255 1.930656 CCCCACCCTCATTGACCCT 60.931 63.158 0.00 0.00 0.00 4.34
3216 4304 2.738139 CGGATCGTGTGCACAGCA 60.738 61.111 22.40 10.22 35.60 4.41
3217 4305 2.738521 ACGGATCGTGTGCACAGC 60.739 61.111 22.40 14.14 39.18 4.40
3234 4322 1.302351 TGTGTGGATCGTGCATGCA 60.302 52.632 18.46 18.46 0.00 3.96
3235 4323 1.135315 GTGTGTGGATCGTGCATGC 59.865 57.895 11.82 11.82 0.00 4.06
3236 4324 1.013524 TCGTGTGTGGATCGTGCATG 61.014 55.000 0.00 0.00 0.00 4.06
3237 4325 1.014044 GTCGTGTGTGGATCGTGCAT 61.014 55.000 0.00 0.00 0.00 3.96
3238 4326 1.663388 GTCGTGTGTGGATCGTGCA 60.663 57.895 0.00 0.00 0.00 4.57
3239 4327 1.014044 ATGTCGTGTGTGGATCGTGC 61.014 55.000 0.00 0.00 0.00 5.34
3240 4328 0.715551 CATGTCGTGTGTGGATCGTG 59.284 55.000 0.00 0.00 0.00 4.35
3241 4329 0.601057 TCATGTCGTGTGTGGATCGT 59.399 50.000 0.00 0.00 0.00 3.73
3242 4330 1.926561 ATCATGTCGTGTGTGGATCG 58.073 50.000 0.00 0.00 0.00 3.69
3243 4331 3.181507 CCAAATCATGTCGTGTGTGGATC 60.182 47.826 0.00 0.00 0.00 3.36
3244 4332 2.749076 CCAAATCATGTCGTGTGTGGAT 59.251 45.455 0.00 0.00 0.00 3.41
3245 4333 2.150390 CCAAATCATGTCGTGTGTGGA 58.850 47.619 0.00 0.00 0.00 4.02
3246 4334 1.199789 CCCAAATCATGTCGTGTGTGG 59.800 52.381 0.00 0.00 0.00 4.17
3247 4335 1.401409 GCCCAAATCATGTCGTGTGTG 60.401 52.381 0.00 0.00 0.00 3.82
3248 4336 0.881118 GCCCAAATCATGTCGTGTGT 59.119 50.000 0.00 0.00 0.00 3.72
3249 4337 0.171007 GGCCCAAATCATGTCGTGTG 59.829 55.000 0.00 0.00 0.00 3.82
3250 4338 0.251121 TGGCCCAAATCATGTCGTGT 60.251 50.000 0.00 0.00 0.00 4.49
3251 4339 0.171007 GTGGCCCAAATCATGTCGTG 59.829 55.000 0.00 0.00 0.00 4.35
3252 4340 0.251121 TGTGGCCCAAATCATGTCGT 60.251 50.000 0.00 0.00 0.00 4.34
3253 4341 0.452987 CTGTGGCCCAAATCATGTCG 59.547 55.000 0.00 0.00 0.00 4.35
3254 4342 1.747355 CTCTGTGGCCCAAATCATGTC 59.253 52.381 0.00 0.00 0.00 3.06
3255 4343 1.355381 TCTCTGTGGCCCAAATCATGT 59.645 47.619 0.00 0.00 0.00 3.21
3256 4344 2.133281 TCTCTGTGGCCCAAATCATG 57.867 50.000 0.00 0.00 0.00 3.07
3257 4345 3.393426 AATCTCTGTGGCCCAAATCAT 57.607 42.857 0.00 0.00 0.00 2.45
3258 4346 2.905415 AATCTCTGTGGCCCAAATCA 57.095 45.000 0.00 0.00 0.00 2.57
3259 4347 3.065371 CGTAAATCTCTGTGGCCCAAATC 59.935 47.826 0.00 0.00 0.00 2.17
3260 4348 3.016736 CGTAAATCTCTGTGGCCCAAAT 58.983 45.455 0.00 0.00 0.00 2.32
3261 4349 2.039216 TCGTAAATCTCTGTGGCCCAAA 59.961 45.455 0.00 0.00 0.00 3.28
3262 4350 1.626321 TCGTAAATCTCTGTGGCCCAA 59.374 47.619 0.00 0.00 0.00 4.12
3263 4351 1.271856 TCGTAAATCTCTGTGGCCCA 58.728 50.000 0.00 0.00 0.00 5.36
3264 4352 2.396590 TTCGTAAATCTCTGTGGCCC 57.603 50.000 0.00 0.00 0.00 5.80
3265 4353 2.093783 CGTTTCGTAAATCTCTGTGGCC 59.906 50.000 0.00 0.00 0.00 5.36
3266 4354 2.991190 TCGTTTCGTAAATCTCTGTGGC 59.009 45.455 0.00 0.00 0.00 5.01
3267 4355 3.612860 CCTCGTTTCGTAAATCTCTGTGG 59.387 47.826 0.00 0.00 0.00 4.17
3268 4356 3.060895 GCCTCGTTTCGTAAATCTCTGTG 59.939 47.826 0.00 0.00 0.00 3.66
3269 4357 3.251571 GCCTCGTTTCGTAAATCTCTGT 58.748 45.455 0.00 0.00 0.00 3.41
3270 4358 3.250744 TGCCTCGTTTCGTAAATCTCTG 58.749 45.455 0.00 0.00 0.00 3.35
3271 4359 3.587797 TGCCTCGTTTCGTAAATCTCT 57.412 42.857 0.00 0.00 0.00 3.10
3272 4360 3.181523 GGTTGCCTCGTTTCGTAAATCTC 60.182 47.826 0.00 0.00 0.00 2.75
3273 4361 2.740447 GGTTGCCTCGTTTCGTAAATCT 59.260 45.455 0.00 0.00 0.00 2.40
3274 4362 2.159612 GGGTTGCCTCGTTTCGTAAATC 60.160 50.000 0.00 0.00 0.00 2.17
3275 4363 1.808343 GGGTTGCCTCGTTTCGTAAAT 59.192 47.619 0.00 0.00 0.00 1.40
3276 4364 1.228533 GGGTTGCCTCGTTTCGTAAA 58.771 50.000 0.00 0.00 0.00 2.01
3277 4365 0.106335 TGGGTTGCCTCGTTTCGTAA 59.894 50.000 0.00 0.00 0.00 3.18
3278 4366 0.106335 TTGGGTTGCCTCGTTTCGTA 59.894 50.000 0.00 0.00 0.00 3.43
3279 4367 1.153127 TTGGGTTGCCTCGTTTCGT 60.153 52.632 0.00 0.00 0.00 3.85
3280 4368 1.574428 CTTGGGTTGCCTCGTTTCG 59.426 57.895 0.00 0.00 0.00 3.46
3281 4369 1.524008 CCCTTGGGTTGCCTCGTTTC 61.524 60.000 0.00 0.00 0.00 2.78
3282 4370 1.530655 CCCTTGGGTTGCCTCGTTT 60.531 57.895 0.00 0.00 0.00 3.60
3283 4371 2.115266 CCCTTGGGTTGCCTCGTT 59.885 61.111 0.00 0.00 0.00 3.85
3284 4372 3.175710 ACCCTTGGGTTGCCTCGT 61.176 61.111 5.34 0.00 0.00 4.18
3285 4373 2.119484 TACACCCTTGGGTTGCCTCG 62.119 60.000 8.91 0.00 0.00 4.63
3286 4374 0.322546 CTACACCCTTGGGTTGCCTC 60.323 60.000 8.91 0.00 0.00 4.70
3287 4375 0.770557 TCTACACCCTTGGGTTGCCT 60.771 55.000 8.91 0.00 0.00 4.75
3288 4376 0.331616 ATCTACACCCTTGGGTTGCC 59.668 55.000 8.91 0.00 0.00 4.52
3289 4377 1.271926 ACATCTACACCCTTGGGTTGC 60.272 52.381 8.91 0.00 0.00 4.17
3290 4378 2.224769 ACACATCTACACCCTTGGGTTG 60.225 50.000 8.91 7.23 0.00 3.77
3291 4379 2.062636 ACACATCTACACCCTTGGGTT 58.937 47.619 8.91 3.95 0.00 4.11
3292 4380 1.742308 ACACATCTACACCCTTGGGT 58.258 50.000 5.34 5.34 0.00 4.51
3293 4381 2.224769 ACAACACATCTACACCCTTGGG 60.225 50.000 3.77 3.77 0.00 4.12
3294 4382 3.074412 GACAACACATCTACACCCTTGG 58.926 50.000 0.00 0.00 0.00 3.61
3295 4383 2.736721 CGACAACACATCTACACCCTTG 59.263 50.000 0.00 0.00 0.00 3.61
3296 4384 2.367567 ACGACAACACATCTACACCCTT 59.632 45.455 0.00 0.00 0.00 3.95
3297 4385 1.968493 ACGACAACACATCTACACCCT 59.032 47.619 0.00 0.00 0.00 4.34
3298 4386 2.066262 CACGACAACACATCTACACCC 58.934 52.381 0.00 0.00 0.00 4.61
3299 4387 1.459592 GCACGACAACACATCTACACC 59.540 52.381 0.00 0.00 0.00 4.16
3300 4388 1.124297 CGCACGACAACACATCTACAC 59.876 52.381 0.00 0.00 0.00 2.90
3301 4389 1.414378 CGCACGACAACACATCTACA 58.586 50.000 0.00 0.00 0.00 2.74
3302 4390 0.093026 GCGCACGACAACACATCTAC 59.907 55.000 0.30 0.00 0.00 2.59
3303 4391 0.319125 TGCGCACGACAACACATCTA 60.319 50.000 5.66 0.00 0.00 1.98
3304 4392 1.560004 CTGCGCACGACAACACATCT 61.560 55.000 5.66 0.00 0.00 2.90
3305 4393 1.154599 CTGCGCACGACAACACATC 60.155 57.895 5.66 0.00 0.00 3.06
3306 4394 0.950555 ATCTGCGCACGACAACACAT 60.951 50.000 5.66 0.00 0.00 3.21
3307 4395 1.556591 GATCTGCGCACGACAACACA 61.557 55.000 5.66 0.00 0.00 3.72
3308 4396 1.130613 GATCTGCGCACGACAACAC 59.869 57.895 5.66 0.00 0.00 3.32
3309 4397 2.371923 CGATCTGCGCACGACAACA 61.372 57.895 5.66 0.00 0.00 3.33
3310 4398 2.372690 ACGATCTGCGCACGACAAC 61.373 57.895 23.36 11.32 46.04 3.32
3311 4399 2.049526 ACGATCTGCGCACGACAA 60.050 55.556 23.36 0.29 46.04 3.18
3312 4400 2.804931 CACGATCTGCGCACGACA 60.805 61.111 23.36 1.02 46.04 4.35
3313 4401 4.196826 GCACGATCTGCGCACGAC 62.197 66.667 23.36 12.10 46.04 4.34
3321 4409 5.135330 CACGATAAATTCATGCACGATCTG 58.865 41.667 0.00 0.00 0.00 2.90
3322 4410 4.811024 ACACGATAAATTCATGCACGATCT 59.189 37.500 0.00 0.00 0.00 2.75
3323 4411 4.900182 CACACGATAAATTCATGCACGATC 59.100 41.667 0.00 0.00 0.00 3.69
3324 4412 4.332543 ACACACGATAAATTCATGCACGAT 59.667 37.500 0.00 0.00 0.00 3.73
3325 4413 3.682377 ACACACGATAAATTCATGCACGA 59.318 39.130 0.00 0.00 0.00 4.35
3326 4414 3.780279 CACACACGATAAATTCATGCACG 59.220 43.478 0.00 0.00 0.00 5.34
3327 4415 4.722194 ACACACACGATAAATTCATGCAC 58.278 39.130 0.00 0.00 0.00 4.57
3328 4416 5.447144 GCTACACACACGATAAATTCATGCA 60.447 40.000 0.00 0.00 0.00 3.96
3329 4417 4.963953 GCTACACACACGATAAATTCATGC 59.036 41.667 0.00 0.00 0.00 4.06
3330 4418 6.105657 TGCTACACACACGATAAATTCATG 57.894 37.500 0.00 0.00 0.00 3.07
3331 4419 5.874810 ACTGCTACACACACGATAAATTCAT 59.125 36.000 0.00 0.00 0.00 2.57
3332 4420 5.120053 CACTGCTACACACACGATAAATTCA 59.880 40.000 0.00 0.00 0.00 2.57
3333 4421 5.550981 CACTGCTACACACACGATAAATTC 58.449 41.667 0.00 0.00 0.00 2.17
3334 4422 4.142902 GCACTGCTACACACACGATAAATT 60.143 41.667 0.00 0.00 0.00 1.82
3335 4423 3.370978 GCACTGCTACACACACGATAAAT 59.629 43.478 0.00 0.00 0.00 1.40
3336 4424 2.734606 GCACTGCTACACACACGATAAA 59.265 45.455 0.00 0.00 0.00 1.40
3337 4425 2.029380 AGCACTGCTACACACACGATAA 60.029 45.455 0.21 0.00 36.99 1.75
3338 4426 1.544246 AGCACTGCTACACACACGATA 59.456 47.619 0.21 0.00 36.99 2.92
3339 4427 0.318441 AGCACTGCTACACACACGAT 59.682 50.000 0.21 0.00 36.99 3.73
3340 4428 0.318699 GAGCACTGCTACACACACGA 60.319 55.000 2.71 0.00 39.88 4.35
3341 4429 0.319040 AGAGCACTGCTACACACACG 60.319 55.000 2.71 0.00 39.88 4.49
3342 4430 1.528586 CAAGAGCACTGCTACACACAC 59.471 52.381 2.71 0.00 39.88 3.82
3343 4431 1.412343 TCAAGAGCACTGCTACACACA 59.588 47.619 2.71 0.00 39.88 3.72
3344 4432 2.154854 TCAAGAGCACTGCTACACAC 57.845 50.000 2.71 0.00 39.88 3.82
3345 4433 2.158971 TGTTCAAGAGCACTGCTACACA 60.159 45.455 2.71 0.28 39.88 3.72
3346 4434 2.483876 TGTTCAAGAGCACTGCTACAC 58.516 47.619 2.71 0.00 39.88 2.90
3347 4435 2.872245 GTTGTTCAAGAGCACTGCTACA 59.128 45.455 2.71 1.28 39.88 2.74
3348 4436 2.872245 TGTTGTTCAAGAGCACTGCTAC 59.128 45.455 2.71 0.00 39.88 3.58
3349 4437 3.133691 CTGTTGTTCAAGAGCACTGCTA 58.866 45.455 2.71 0.00 39.88 3.49
3350 4438 1.945394 CTGTTGTTCAAGAGCACTGCT 59.055 47.619 2.22 2.22 43.88 4.24
3351 4439 1.672881 ACTGTTGTTCAAGAGCACTGC 59.327 47.619 9.14 0.00 0.00 4.40
3363 4451 0.755327 GTGGGGGCTGAACTGTTGTT 60.755 55.000 0.00 0.00 39.42 2.83
3364 4452 1.152756 GTGGGGGCTGAACTGTTGT 60.153 57.895 0.00 0.00 0.00 3.32
3365 4453 1.903404 GGTGGGGGCTGAACTGTTG 60.903 63.158 0.00 0.00 0.00 3.33
3366 4454 2.520968 GGTGGGGGCTGAACTGTT 59.479 61.111 0.00 0.00 0.00 3.16
3367 4455 3.580319 GGGTGGGGGCTGAACTGT 61.580 66.667 0.00 0.00 0.00 3.55
3368 4456 4.366684 GGGGTGGGGGCTGAACTG 62.367 72.222 0.00 0.00 0.00 3.16
3411 4499 6.472887 AGCTCCTACATAAAGTAACTTTGCA 58.527 36.000 0.00 0.00 35.21 4.08
3494 4582 1.157513 GTCCCAACCCCCAACCATT 59.842 57.895 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.