Multiple sequence alignment - TraesCS3B01G329600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G329600 chr3B 100.000 2040 0 0 1 2040 532643204 532641165 0.000000e+00 3768
1 TraesCS3B01G329600 chr3B 100.000 323 0 0 2332 2654 532640873 532640551 4.890000e-167 597
2 TraesCS3B01G329600 chr3D 93.765 1620 66 14 441 2036 406413432 406411824 0.000000e+00 2399
3 TraesCS3B01G329600 chr3D 90.311 289 17 9 1 286 406419205 406418925 4.170000e-98 368
4 TraesCS3B01G329600 chr3D 84.877 324 41 8 2333 2654 10908648 10908965 1.190000e-83 320
5 TraesCS3B01G329600 chr7D 88.820 322 35 1 2333 2654 109168668 109168348 6.890000e-106 394
6 TraesCS3B01G329600 chr7D 85.759 316 38 7 2333 2646 582800041 582800351 7.080000e-86 327
7 TraesCS3B01G329600 chr7D 85.139 323 43 5 2333 2654 110347187 110347505 2.550000e-85 326
8 TraesCS3B01G329600 chr5B 89.933 298 28 2 2350 2646 229143947 229144243 1.490000e-102 383
9 TraesCS3B01G329600 chr5D 88.474 321 29 6 2333 2652 124343072 124343385 5.360000e-102 381
10 TraesCS3B01G329600 chr1B 88.158 304 33 3 2353 2654 670877325 670877023 2.510000e-95 359
11 TraesCS3B01G329600 chr1D 86.420 324 38 6 2333 2654 40884195 40884514 1.510000e-92 350
12 TraesCS3B01G329600 chr2B 87.138 311 28 9 2350 2652 14168349 14168043 2.530000e-90 342


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G329600 chr3B 532640551 532643204 2653 True 2182.5 3768 100.000 1 2654 2 chr3B.!!$R1 2653
1 TraesCS3B01G329600 chr3D 406411824 406413432 1608 True 2399.0 2399 93.765 441 2036 1 chr3D.!!$R1 1595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 374 0.037605 ATCCAACGGAGTCAACGGTC 60.038 55.0 0.0 0.0 45.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 1912 0.035036 TTTGTACCACCAATCCGCGA 59.965 50.0 8.23 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.429359 TGAGTTTTAAACACAATTCATGTTTGT 57.571 25.926 20.36 9.89 46.91 2.83
36 37 9.985318 AAACACAATTCATGTTTGTAAAATGTG 57.015 25.926 13.93 11.07 46.05 3.21
37 38 8.715191 ACACAATTCATGTTTGTAAAATGTGT 57.285 26.923 13.76 11.57 41.46 3.72
38 39 9.160496 ACACAATTCATGTTTGTAAAATGTGTT 57.840 25.926 13.76 0.83 41.46 3.32
39 40 9.635632 CACAATTCATGTTTGTAAAATGTGTTC 57.364 29.630 13.76 0.00 41.46 3.18
40 41 9.376075 ACAATTCATGTTTGTAAAATGTGTTCA 57.624 25.926 12.89 0.00 40.06 3.18
41 42 9.635632 CAATTCATGTTTGTAAAATGTGTTCAC 57.364 29.630 0.00 0.00 0.00 3.18
42 43 8.939201 ATTCATGTTTGTAAAATGTGTTCACA 57.061 26.923 8.09 8.09 0.00 3.58
43 44 8.763049 TTCATGTTTGTAAAATGTGTTCACAA 57.237 26.923 9.68 0.00 0.00 3.33
44 45 8.939201 TCATGTTTGTAAAATGTGTTCACAAT 57.061 26.923 9.68 0.00 0.00 2.71
45 46 9.376075 TCATGTTTGTAAAATGTGTTCACAATT 57.624 25.926 9.68 5.17 0.00 2.32
46 47 9.985318 CATGTTTGTAAAATGTGTTCACAATTT 57.015 25.926 18.54 18.54 0.00 1.82
117 118 9.934190 ATTTGTTTTCGGAATTTTGAGAAAATG 57.066 25.926 5.66 0.00 42.23 2.32
118 119 8.485976 TTGTTTTCGGAATTTTGAGAAAATGT 57.514 26.923 5.66 0.00 42.23 2.71
119 120 8.485976 TGTTTTCGGAATTTTGAGAAAATGTT 57.514 26.923 5.66 0.00 42.23 2.71
120 121 8.940952 TGTTTTCGGAATTTTGAGAAAATGTTT 58.059 25.926 5.66 0.00 42.23 2.83
121 122 9.209297 GTTTTCGGAATTTTGAGAAAATGTTTG 57.791 29.630 5.66 0.00 42.23 2.93
122 123 7.475771 TTCGGAATTTTGAGAAAATGTTTGG 57.524 32.000 0.00 0.00 40.05 3.28
123 124 6.578023 TCGGAATTTTGAGAAAATGTTTGGT 58.422 32.000 0.00 0.00 40.05 3.67
124 125 7.044798 TCGGAATTTTGAGAAAATGTTTGGTT 58.955 30.769 0.00 0.00 40.05 3.67
125 126 8.198109 TCGGAATTTTGAGAAAATGTTTGGTTA 58.802 29.630 0.00 0.00 40.05 2.85
126 127 8.987890 CGGAATTTTGAGAAAATGTTTGGTTAT 58.012 29.630 0.00 0.00 40.05 1.89
130 131 9.844257 ATTTTGAGAAAATGTTTGGTTATTGGA 57.156 25.926 0.00 0.00 39.50 3.53
131 132 9.672673 TTTTGAGAAAATGTTTGGTTATTGGAA 57.327 25.926 0.00 0.00 0.00 3.53
132 133 9.672673 TTTGAGAAAATGTTTGGTTATTGGAAA 57.327 25.926 0.00 0.00 0.00 3.13
133 134 9.844257 TTGAGAAAATGTTTGGTTATTGGAAAT 57.156 25.926 0.00 0.00 0.00 2.17
134 135 9.844257 TGAGAAAATGTTTGGTTATTGGAAATT 57.156 25.926 0.00 0.00 0.00 1.82
142 143 8.897752 TGTTTGGTTATTGGAAATTTTCTTTGG 58.102 29.630 8.93 0.00 0.00 3.28
143 144 9.114952 GTTTGGTTATTGGAAATTTTCTTTGGA 57.885 29.630 8.93 0.00 0.00 3.53
144 145 9.686683 TTTGGTTATTGGAAATTTTCTTTGGAA 57.313 25.926 8.93 0.00 0.00 3.53
145 146 9.686683 TTGGTTATTGGAAATTTTCTTTGGAAA 57.313 25.926 8.93 0.00 39.38 3.13
146 147 9.859152 TGGTTATTGGAAATTTTCTTTGGAAAT 57.141 25.926 8.93 3.68 40.57 2.17
230 231 7.907214 AAAAAGATCACAATAGTAGCGACTT 57.093 32.000 4.33 0.00 37.10 3.01
231 232 6.893958 AAAGATCACAATAGTAGCGACTTG 57.106 37.500 4.33 0.60 37.10 3.16
232 233 5.584253 AGATCACAATAGTAGCGACTTGT 57.416 39.130 4.33 1.30 37.10 3.16
233 234 6.694877 AGATCACAATAGTAGCGACTTGTA 57.305 37.500 4.33 0.00 37.10 2.41
234 235 6.496571 AGATCACAATAGTAGCGACTTGTAC 58.503 40.000 4.33 0.84 37.10 2.90
235 236 5.632244 TCACAATAGTAGCGACTTGTACA 57.368 39.130 4.33 0.00 37.10 2.90
236 237 5.637809 TCACAATAGTAGCGACTTGTACAG 58.362 41.667 4.33 0.00 37.10 2.74
237 238 5.182570 TCACAATAGTAGCGACTTGTACAGT 59.817 40.000 4.33 0.00 39.07 3.55
238 239 6.372381 TCACAATAGTAGCGACTTGTACAGTA 59.628 38.462 4.33 0.00 35.01 2.74
239 240 6.687531 CACAATAGTAGCGACTTGTACAGTAG 59.312 42.308 4.33 0.00 35.01 2.57
240 241 6.596888 ACAATAGTAGCGACTTGTACAGTAGA 59.403 38.462 4.33 0.00 35.01 2.59
241 242 7.282675 ACAATAGTAGCGACTTGTACAGTAGAT 59.717 37.037 4.33 2.41 35.01 1.98
242 243 5.487153 AGTAGCGACTTGTACAGTAGATG 57.513 43.478 1.53 0.00 35.01 2.90
243 244 4.942483 AGTAGCGACTTGTACAGTAGATGT 59.058 41.667 1.53 0.00 38.19 3.06
244 245 4.358494 AGCGACTTGTACAGTAGATGTC 57.642 45.455 11.76 11.76 42.70 3.06
245 246 3.099362 GCGACTTGTACAGTAGATGTCG 58.901 50.000 28.22 28.22 45.77 4.35
246 247 3.681855 CGACTTGTACAGTAGATGTCGG 58.318 50.000 26.34 14.75 42.16 4.79
247 248 3.126514 CGACTTGTACAGTAGATGTCGGT 59.873 47.826 26.34 3.93 42.16 4.69
248 249 4.413087 GACTTGTACAGTAGATGTCGGTG 58.587 47.826 7.70 0.00 42.70 4.94
249 250 3.192844 ACTTGTACAGTAGATGTCGGTGG 59.807 47.826 1.53 0.00 42.70 4.61
250 251 2.097036 TGTACAGTAGATGTCGGTGGG 58.903 52.381 0.00 0.00 42.70 4.61
251 252 1.108776 TACAGTAGATGTCGGTGGGC 58.891 55.000 0.00 0.00 42.70 5.36
252 253 0.902984 ACAGTAGATGTCGGTGGGCA 60.903 55.000 0.00 0.00 37.75 5.36
253 254 0.179100 CAGTAGATGTCGGTGGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
254 255 1.144057 GTAGATGTCGGTGGGCAGG 59.856 63.158 0.00 0.00 0.00 4.85
255 256 2.731571 TAGATGTCGGTGGGCAGGC 61.732 63.158 0.00 0.00 0.00 4.85
273 274 4.711949 CCAGCCAGCGACAGCCTT 62.712 66.667 0.00 0.00 46.67 4.35
274 275 3.429141 CAGCCAGCGACAGCCTTG 61.429 66.667 0.00 0.00 46.67 3.61
275 276 3.946201 AGCCAGCGACAGCCTTGT 61.946 61.111 0.00 0.00 46.67 3.16
276 277 3.730761 GCCAGCGACAGCCTTGTG 61.731 66.667 0.00 0.00 46.67 3.33
277 278 3.730761 CCAGCGACAGCCTTGTGC 61.731 66.667 0.00 0.00 46.67 4.57
297 298 3.665173 CGAAAGCTCTGGACTATTTGC 57.335 47.619 0.00 0.00 0.00 3.68
298 299 2.352960 CGAAAGCTCTGGACTATTTGCC 59.647 50.000 0.00 0.00 0.00 4.52
299 300 2.029838 AAGCTCTGGACTATTTGCCG 57.970 50.000 0.00 0.00 0.00 5.69
300 301 0.462759 AGCTCTGGACTATTTGCCGC 60.463 55.000 0.00 0.00 0.00 6.53
301 302 0.744414 GCTCTGGACTATTTGCCGCA 60.744 55.000 0.00 0.00 0.00 5.69
302 303 1.293924 CTCTGGACTATTTGCCGCAG 58.706 55.000 0.00 0.00 0.00 5.18
303 304 0.744414 TCTGGACTATTTGCCGCAGC 60.744 55.000 0.00 0.00 40.48 5.25
320 321 1.008079 GCATGCGGCAAATAGGAGC 60.008 57.895 6.82 0.00 43.97 4.70
321 322 1.450531 GCATGCGGCAAATAGGAGCT 61.451 55.000 6.82 0.00 43.97 4.09
322 323 0.590195 CATGCGGCAAATAGGAGCTC 59.410 55.000 6.82 4.71 0.00 4.09
323 324 0.536006 ATGCGGCAAATAGGAGCTCC 60.536 55.000 26.22 26.22 0.00 4.70
324 325 1.894282 GCGGCAAATAGGAGCTCCC 60.894 63.158 29.54 12.48 36.42 4.30
337 338 4.849518 AGGAGCTCCCTAAAATCTTTGAC 58.150 43.478 29.54 0.00 45.48 3.18
338 339 3.623510 GGAGCTCCCTAAAATCTTTGACG 59.376 47.826 23.19 0.00 0.00 4.35
339 340 3.610911 AGCTCCCTAAAATCTTTGACGG 58.389 45.455 0.00 0.00 0.00 4.79
340 341 3.263425 AGCTCCCTAAAATCTTTGACGGA 59.737 43.478 0.00 0.00 0.00 4.69
341 342 3.623510 GCTCCCTAAAATCTTTGACGGAG 59.376 47.826 0.00 0.00 38.94 4.63
357 358 4.715527 ACGGAGTACTACTTTGACATCC 57.284 45.455 2.99 0.00 41.94 3.51
358 359 4.084287 ACGGAGTACTACTTTGACATCCA 58.916 43.478 2.99 0.00 41.94 3.41
359 360 4.525487 ACGGAGTACTACTTTGACATCCAA 59.475 41.667 2.99 0.00 41.94 3.53
360 361 4.863131 CGGAGTACTACTTTGACATCCAAC 59.137 45.833 2.99 0.00 33.85 3.77
361 362 4.863131 GGAGTACTACTTTGACATCCAACG 59.137 45.833 0.00 0.00 33.85 4.10
362 363 4.817517 AGTACTACTTTGACATCCAACGG 58.182 43.478 0.00 0.00 33.85 4.44
363 364 4.525487 AGTACTACTTTGACATCCAACGGA 59.475 41.667 0.00 0.00 33.85 4.69
364 365 3.926616 ACTACTTTGACATCCAACGGAG 58.073 45.455 0.00 0.00 39.96 4.63
365 366 4.525487 TACTACTTTGACATCCAACGGAGT 59.475 41.667 0.00 0.00 46.29 3.85
366 367 2.767505 ACTTTGACATCCAACGGAGTC 58.232 47.619 0.00 0.00 45.00 3.36
367 368 2.104111 ACTTTGACATCCAACGGAGTCA 59.896 45.455 9.72 9.72 45.00 3.41
368 369 2.920724 TTGACATCCAACGGAGTCAA 57.079 45.000 16.97 16.97 45.00 3.18
369 370 2.163818 TGACATCCAACGGAGTCAAC 57.836 50.000 10.80 0.00 45.00 3.18
370 371 1.068474 GACATCCAACGGAGTCAACG 58.932 55.000 0.00 0.00 45.00 4.10
371 372 0.320421 ACATCCAACGGAGTCAACGG 60.320 55.000 0.00 0.00 45.00 4.44
372 373 0.320421 CATCCAACGGAGTCAACGGT 60.320 55.000 0.00 0.00 45.00 4.83
373 374 0.037605 ATCCAACGGAGTCAACGGTC 60.038 55.000 0.00 0.00 45.00 4.79
374 375 1.666872 CCAACGGAGTCAACGGTCC 60.667 63.158 0.00 0.00 45.00 4.46
375 376 1.068417 CAACGGAGTCAACGGTCCA 59.932 57.895 0.00 0.00 45.00 4.02
376 377 0.944311 CAACGGAGTCAACGGTCCAG 60.944 60.000 0.00 0.00 45.00 3.86
377 378 2.432628 CGGAGTCAACGGTCCAGC 60.433 66.667 0.00 0.00 32.55 4.85
378 379 2.047179 GGAGTCAACGGTCCAGCC 60.047 66.667 0.00 0.00 32.55 4.85
379 380 2.584391 GGAGTCAACGGTCCAGCCT 61.584 63.158 0.00 0.00 32.55 4.58
380 381 1.371558 GAGTCAACGGTCCAGCCTT 59.628 57.895 0.00 0.00 34.25 4.35
381 382 0.250338 GAGTCAACGGTCCAGCCTTT 60.250 55.000 0.00 0.00 34.25 3.11
382 383 0.250338 AGTCAACGGTCCAGCCTTTC 60.250 55.000 0.00 0.00 34.25 2.62
383 384 0.250338 GTCAACGGTCCAGCCTTTCT 60.250 55.000 0.00 0.00 34.25 2.52
384 385 0.250295 TCAACGGTCCAGCCTTTCTG 60.250 55.000 0.00 0.00 42.49 3.02
385 386 0.535102 CAACGGTCCAGCCTTTCTGT 60.535 55.000 0.00 0.00 41.25 3.41
386 387 0.182775 AACGGTCCAGCCTTTCTGTT 59.817 50.000 0.00 0.00 41.25 3.16
387 388 0.182775 ACGGTCCAGCCTTTCTGTTT 59.817 50.000 0.00 0.00 41.25 2.83
388 389 1.318576 CGGTCCAGCCTTTCTGTTTT 58.681 50.000 0.00 0.00 41.25 2.43
389 390 1.681264 CGGTCCAGCCTTTCTGTTTTT 59.319 47.619 0.00 0.00 41.25 1.94
390 391 2.543653 CGGTCCAGCCTTTCTGTTTTTG 60.544 50.000 0.00 0.00 41.25 2.44
391 392 2.693074 GGTCCAGCCTTTCTGTTTTTGA 59.307 45.455 0.00 0.00 41.25 2.69
392 393 3.132111 GGTCCAGCCTTTCTGTTTTTGAA 59.868 43.478 0.00 0.00 41.25 2.69
393 394 4.382577 GGTCCAGCCTTTCTGTTTTTGAAA 60.383 41.667 0.00 0.00 41.25 2.69
394 395 4.805719 GTCCAGCCTTTCTGTTTTTGAAAG 59.194 41.667 8.69 8.69 45.77 2.62
400 401 5.337578 CTTTCTGTTTTTGAAAGGACCCA 57.662 39.130 7.98 0.00 43.75 4.51
401 402 5.729510 CTTTCTGTTTTTGAAAGGACCCAA 58.270 37.500 7.98 0.00 43.75 4.12
402 403 5.746990 TTCTGTTTTTGAAAGGACCCAAA 57.253 34.783 0.00 0.00 0.00 3.28
403 404 5.079689 TCTGTTTTTGAAAGGACCCAAAC 57.920 39.130 0.00 0.00 32.67 2.93
404 405 4.775253 TCTGTTTTTGAAAGGACCCAAACT 59.225 37.500 0.00 0.00 32.67 2.66
405 406 5.247337 TCTGTTTTTGAAAGGACCCAAACTT 59.753 36.000 0.00 0.00 32.67 2.66
406 407 5.870706 TGTTTTTGAAAGGACCCAAACTTT 58.129 33.333 0.00 0.00 39.45 2.66
411 412 3.296854 GAAAGGACCCAAACTTTCCTGT 58.703 45.455 6.00 0.00 44.12 4.00
412 413 2.658807 AGGACCCAAACTTTCCTGTC 57.341 50.000 0.00 0.00 38.40 3.51
413 414 1.202770 AGGACCCAAACTTTCCTGTCG 60.203 52.381 0.00 0.00 38.40 4.35
414 415 1.476291 GGACCCAAACTTTCCTGTCGT 60.476 52.381 0.00 0.00 0.00 4.34
415 416 2.294979 GACCCAAACTTTCCTGTCGTT 58.705 47.619 0.00 0.00 0.00 3.85
416 417 2.021457 ACCCAAACTTTCCTGTCGTTG 58.979 47.619 0.00 0.00 0.00 4.10
417 418 1.336755 CCCAAACTTTCCTGTCGTTGG 59.663 52.381 0.00 0.00 0.00 3.77
418 419 1.269051 CCAAACTTTCCTGTCGTTGGC 60.269 52.381 0.00 0.00 0.00 4.52
419 420 1.403679 CAAACTTTCCTGTCGTTGGCA 59.596 47.619 0.00 0.00 0.00 4.92
420 421 1.021968 AACTTTCCTGTCGTTGGCAC 58.978 50.000 0.00 0.00 0.00 5.01
421 422 0.180406 ACTTTCCTGTCGTTGGCACT 59.820 50.000 0.00 0.00 0.00 4.40
422 423 1.308998 CTTTCCTGTCGTTGGCACTT 58.691 50.000 0.00 0.00 0.00 3.16
423 424 1.002468 CTTTCCTGTCGTTGGCACTTG 60.002 52.381 0.00 0.00 0.00 3.16
424 425 0.817634 TTCCTGTCGTTGGCACTTGG 60.818 55.000 0.00 0.00 0.00 3.61
425 426 2.260869 CCTGTCGTTGGCACTTGGG 61.261 63.158 0.00 0.00 0.00 4.12
426 427 2.203280 TGTCGTTGGCACTTGGGG 60.203 61.111 0.00 0.00 0.00 4.96
427 428 2.112297 GTCGTTGGCACTTGGGGA 59.888 61.111 0.00 0.00 0.00 4.81
428 429 2.112297 TCGTTGGCACTTGGGGAC 59.888 61.111 0.00 0.00 0.00 4.46
429 430 2.203280 CGTTGGCACTTGGGGACA 60.203 61.111 0.00 0.00 39.83 4.02
430 431 2.260869 CGTTGGCACTTGGGGACAG 61.261 63.158 0.00 0.00 44.54 3.51
431 432 1.152756 GTTGGCACTTGGGGACAGT 60.153 57.895 0.00 0.00 44.54 3.55
432 433 0.109723 GTTGGCACTTGGGGACAGTA 59.890 55.000 0.00 0.00 44.54 2.74
433 434 1.072266 TTGGCACTTGGGGACAGTAT 58.928 50.000 0.00 0.00 44.54 2.12
434 435 0.618458 TGGCACTTGGGGACAGTATC 59.382 55.000 0.00 0.00 44.54 2.24
480 481 1.110442 CCACAGCTCTCACTAGGGAG 58.890 60.000 16.43 16.43 36.21 4.30
486 487 1.679336 GCTCTCACTAGGGAGACGTGA 60.679 57.143 21.12 0.32 38.95 4.35
533 535 1.063174 GGCGTTAGCTGAATTGCTGAG 59.937 52.381 0.00 0.00 43.87 3.35
548 550 0.661552 CTGAGCGGCCAATCAATCAG 59.338 55.000 2.24 2.51 0.00 2.90
704 707 3.765505 GCGTTTTCTATAGCGCGTAAT 57.234 42.857 8.43 4.08 40.46 1.89
719 722 1.470979 CGTAATGTGGAGGGAGAACGG 60.471 57.143 0.00 0.00 0.00 4.44
723 726 1.185618 TGTGGAGGGAGAACGGAGTG 61.186 60.000 0.00 0.00 45.00 3.51
769 772 4.913335 AGTTCGTCACAAGTCAAGTCTA 57.087 40.909 0.00 0.00 0.00 2.59
826 829 3.965258 TGCCCATGCTTCACGGGT 61.965 61.111 0.00 0.00 42.44 5.28
828 831 2.112815 GCCCATGCTTCACGGGTAC 61.113 63.158 0.00 0.00 42.44 3.34
845 848 2.220615 TACACCACATGCGGACGGAG 62.221 60.000 6.80 0.00 0.00 4.63
864 867 1.544246 AGCGCGTGCATATATAGTGGA 59.456 47.619 24.79 0.00 46.23 4.02
898 901 2.418368 ACTTGGCAGTTGACAGTTGA 57.582 45.000 0.00 0.00 32.66 3.18
899 902 2.017049 ACTTGGCAGTTGACAGTTGAC 58.983 47.619 0.00 0.00 32.66 3.18
900 903 2.016318 CTTGGCAGTTGACAGTTGACA 58.984 47.619 0.00 0.00 32.66 3.58
902 905 0.304705 GGCAGTTGACAGTTGACACG 59.695 55.000 0.00 0.00 0.00 4.49
903 906 0.316196 GCAGTTGACAGTTGACACGC 60.316 55.000 0.00 0.00 0.00 5.34
904 907 1.006086 CAGTTGACAGTTGACACGCA 58.994 50.000 0.00 0.00 0.00 5.24
905 908 1.396648 CAGTTGACAGTTGACACGCAA 59.603 47.619 0.00 0.00 0.00 4.85
925 934 5.609088 GCAACTCTAGTACATTTGTCAACG 58.391 41.667 0.00 0.00 0.00 4.10
926 935 5.176958 GCAACTCTAGTACATTTGTCAACGT 59.823 40.000 0.00 0.00 0.00 3.99
963 972 0.317479 ACGTCGAAGAACTCCCCAAG 59.683 55.000 5.05 0.00 39.69 3.61
981 990 3.367743 CCGTCGAGGGACCGAACA 61.368 66.667 19.44 0.00 40.51 3.18
984 993 1.080705 GTCGAGGGACCGAACACAG 60.081 63.158 0.00 0.00 40.51 3.66
1014 1023 4.142902 CCAAGCAACATGACGGTAAGTAAG 60.143 45.833 0.00 0.00 0.00 2.34
1025 1034 2.484947 CGGTAAGTAAGCCAATCTCCCC 60.485 54.545 0.00 0.00 0.00 4.81
1034 1043 0.749649 CCAATCTCCCCTCTCACGAG 59.250 60.000 0.00 0.00 37.01 4.18
1108 1117 0.394762 TGATGATGCTGCCTTGGTCC 60.395 55.000 0.00 0.00 0.00 4.46
1121 1130 1.133181 TTGGTCCATCACCTGCCAGA 61.133 55.000 0.00 0.00 46.98 3.86
1231 1240 7.092079 CACTAGCTTTCTATCTGAGATCATGG 58.908 42.308 0.00 0.00 32.88 3.66
1232 1241 7.009550 ACTAGCTTTCTATCTGAGATCATGGA 58.990 38.462 0.00 0.00 32.88 3.41
1233 1242 6.938698 AGCTTTCTATCTGAGATCATGGAT 57.061 37.500 0.00 0.00 32.88 3.41
1277 1286 2.975732 TGACAGTGATCTGATCTGGC 57.024 50.000 17.82 11.66 43.76 4.85
1630 1639 2.342910 TTACTTCAGCGACGAGAACC 57.657 50.000 0.00 0.00 0.00 3.62
1632 1641 1.446272 CTTCAGCGACGAGAACCCC 60.446 63.158 0.00 0.00 0.00 4.95
1659 1668 1.209128 GCTCCGTAATGTGATCCACG 58.791 55.000 0.00 0.00 37.14 4.94
1675 1684 2.497273 TCCACGCGATCATCATATGGAT 59.503 45.455 15.93 0.00 36.39 3.41
1825 1835 2.124983 CCATCTGAGTGGCACCCG 60.125 66.667 15.27 2.89 31.43 5.28
1850 1860 2.006888 CCGAACGGAACAATATGCTGT 58.993 47.619 7.53 0.00 37.50 4.40
1862 1879 1.533625 TATGCTGTTGTTCCTGTGGC 58.466 50.000 0.00 0.00 0.00 5.01
1887 1912 5.009631 TGCCACTATACAAAGCAACTTCAT 58.990 37.500 0.00 0.00 0.00 2.57
1915 1940 7.628794 GCGGATTGGTGGTACAAAAATGTAATA 60.629 37.037 0.00 0.00 44.16 0.98
1944 1969 4.141482 TGCTCCCATACTTTATTCCCTGTC 60.141 45.833 0.00 0.00 0.00 3.51
1986 2011 5.567430 CATATCATCCAACTCACCATCCAT 58.433 41.667 0.00 0.00 0.00 3.41
1998 2023 1.238439 CCATCCATCCATACCGTTGC 58.762 55.000 0.00 0.00 0.00 4.17
2016 2041 1.003464 TGCCAAGAATGCACTAGCTCA 59.997 47.619 0.00 0.00 42.74 4.26
2019 2044 2.353323 CAAGAATGCACTAGCTCAGCA 58.647 47.619 0.00 9.65 42.74 4.41
2036 2061 0.179034 GCAGGTTAGGGCATCTCCAG 60.179 60.000 0.00 0.00 36.21 3.86
2037 2062 0.179034 CAGGTTAGGGCATCTCCAGC 60.179 60.000 0.00 0.00 36.21 4.85
2350 2375 2.994186 ATTTGGGCTGAAATGGATGC 57.006 45.000 0.00 0.00 0.00 3.91
2351 2376 0.903942 TTTGGGCTGAAATGGATGCC 59.096 50.000 0.00 0.00 44.22 4.40
2352 2377 1.321805 TTGGGCTGAAATGGATGCCG 61.322 55.000 0.00 0.00 45.75 5.69
2353 2378 2.492773 GGGCTGAAATGGATGCCGG 61.493 63.158 0.00 0.00 45.75 6.13
2354 2379 2.414594 GCTGAAATGGATGCCGGC 59.585 61.111 22.73 22.73 0.00 6.13
2355 2380 2.417257 GCTGAAATGGATGCCGGCA 61.417 57.895 34.80 34.80 0.00 5.69
2356 2381 1.731700 CTGAAATGGATGCCGGCAG 59.268 57.895 35.36 13.94 0.00 4.85
2357 2382 0.749091 CTGAAATGGATGCCGGCAGA 60.749 55.000 35.36 21.11 0.00 4.26
2358 2383 1.031571 TGAAATGGATGCCGGCAGAC 61.032 55.000 35.36 28.11 0.00 3.51
2359 2384 1.728490 GAAATGGATGCCGGCAGACC 61.728 60.000 34.29 34.29 0.00 3.85
2360 2385 3.721370 AATGGATGCCGGCAGACCC 62.721 63.158 36.04 32.35 0.00 4.46
2362 2387 4.864334 GGATGCCGGCAGACCCAG 62.864 72.222 35.36 0.00 0.00 4.45
2363 2388 4.864334 GATGCCGGCAGACCCAGG 62.864 72.222 35.36 0.00 0.00 4.45
2371 2396 4.410400 CAGACCCAGGCCGAACCC 62.410 72.222 0.00 0.00 40.58 4.11
2391 2416 3.052082 CACACTGGGGAGCGCTTG 61.052 66.667 13.26 7.26 0.00 4.01
2392 2417 4.335647 ACACTGGGGAGCGCTTGG 62.336 66.667 13.26 2.83 0.00 3.61
2424 2449 4.003011 CGGTTTTGGCGCGAACGA 62.003 61.111 12.10 0.00 43.93 3.85
2425 2450 2.127383 GGTTTTGGCGCGAACGAG 60.127 61.111 12.10 0.00 43.93 4.18
2426 2451 2.127383 GTTTTGGCGCGAACGAGG 60.127 61.111 12.10 0.00 43.93 4.63
2427 2452 2.280254 TTTTGGCGCGAACGAGGA 60.280 55.556 12.10 0.00 43.93 3.71
2428 2453 1.669760 TTTTGGCGCGAACGAGGAT 60.670 52.632 12.10 0.00 43.93 3.24
2429 2454 1.906994 TTTTGGCGCGAACGAGGATG 61.907 55.000 12.10 0.00 43.93 3.51
2430 2455 4.812476 TGGCGCGAACGAGGATGG 62.812 66.667 12.10 0.00 43.93 3.51
2435 2460 4.891727 CGAACGAGGATGGGCCCG 62.892 72.222 19.37 6.25 37.37 6.13
2458 2483 3.290776 GTCAGCGAGACACCACTTT 57.709 52.632 7.37 0.00 46.77 2.66
2459 2484 0.861837 GTCAGCGAGACACCACTTTG 59.138 55.000 7.37 0.00 46.77 2.77
2460 2485 0.464036 TCAGCGAGACACCACTTTGT 59.536 50.000 0.00 0.00 0.00 2.83
2461 2486 1.134521 TCAGCGAGACACCACTTTGTT 60.135 47.619 0.00 0.00 0.00 2.83
2462 2487 1.670811 CAGCGAGACACCACTTTGTTT 59.329 47.619 0.00 0.00 0.00 2.83
2463 2488 1.940613 AGCGAGACACCACTTTGTTTC 59.059 47.619 0.00 0.00 0.00 2.78
2464 2489 1.002792 GCGAGACACCACTTTGTTTCC 60.003 52.381 0.00 0.00 28.81 3.13
2465 2490 1.602377 CGAGACACCACTTTGTTTCCC 59.398 52.381 0.00 0.00 28.81 3.97
2466 2491 2.745152 CGAGACACCACTTTGTTTCCCT 60.745 50.000 0.00 0.00 28.81 4.20
2467 2492 2.879026 GAGACACCACTTTGTTTCCCTC 59.121 50.000 0.00 0.00 0.00 4.30
2468 2493 2.241176 AGACACCACTTTGTTTCCCTCA 59.759 45.455 0.00 0.00 0.00 3.86
2469 2494 3.117512 AGACACCACTTTGTTTCCCTCAT 60.118 43.478 0.00 0.00 0.00 2.90
2470 2495 3.222603 ACACCACTTTGTTTCCCTCATC 58.777 45.455 0.00 0.00 0.00 2.92
2471 2496 2.226437 CACCACTTTGTTTCCCTCATCG 59.774 50.000 0.00 0.00 0.00 3.84
2472 2497 1.200020 CCACTTTGTTTCCCTCATCGC 59.800 52.381 0.00 0.00 0.00 4.58
2473 2498 1.200020 CACTTTGTTTCCCTCATCGCC 59.800 52.381 0.00 0.00 0.00 5.54
2474 2499 1.073923 ACTTTGTTTCCCTCATCGCCT 59.926 47.619 0.00 0.00 0.00 5.52
2475 2500 1.740025 CTTTGTTTCCCTCATCGCCTC 59.260 52.381 0.00 0.00 0.00 4.70
2476 2501 0.391130 TTGTTTCCCTCATCGCCTCG 60.391 55.000 0.00 0.00 0.00 4.63
2477 2502 1.254975 TGTTTCCCTCATCGCCTCGA 61.255 55.000 0.00 0.00 41.13 4.04
2479 2504 0.830648 TTTCCCTCATCGCCTCGATT 59.169 50.000 0.00 0.00 44.59 3.34
2480 2505 0.830648 TTCCCTCATCGCCTCGATTT 59.169 50.000 0.00 0.00 44.59 2.17
2481 2506 0.389391 TCCCTCATCGCCTCGATTTC 59.611 55.000 0.00 0.00 44.59 2.17
2482 2507 0.601311 CCCTCATCGCCTCGATTTCC 60.601 60.000 0.00 0.00 44.59 3.13
2483 2508 0.941463 CCTCATCGCCTCGATTTCCG 60.941 60.000 0.00 0.00 44.59 4.30
2484 2509 1.552348 CTCATCGCCTCGATTTCCGC 61.552 60.000 0.00 0.00 44.59 5.54
2485 2510 2.658593 ATCGCCTCGATTTCCGCG 60.659 61.111 0.00 0.00 44.59 6.46
2486 2511 4.865761 TCGCCTCGATTTCCGCGG 62.866 66.667 22.12 22.12 45.45 6.46
2488 2513 4.524318 GCCTCGATTTCCGCGGGA 62.524 66.667 27.83 16.16 43.04 5.14
2489 2514 2.185867 CCTCGATTTCCGCGGGAA 59.814 61.111 23.80 23.80 39.36 3.97
2490 2515 1.227556 CCTCGATTTCCGCGGGAAT 60.228 57.895 31.78 31.78 41.71 3.01
2491 2516 1.222115 CCTCGATTTCCGCGGGAATC 61.222 60.000 38.71 38.71 41.71 2.52
2492 2517 0.529773 CTCGATTTCCGCGGGAATCA 60.530 55.000 43.08 32.19 41.71 2.57
2493 2518 0.108089 TCGATTTCCGCGGGAATCAA 60.108 50.000 43.08 32.31 41.71 2.57
2494 2519 0.944386 CGATTTCCGCGGGAATCAAT 59.056 50.000 43.08 25.94 41.71 2.57
2495 2520 1.334059 CGATTTCCGCGGGAATCAATG 60.334 52.381 43.08 29.99 41.71 2.82
2496 2521 0.385390 ATTTCCGCGGGAATCAATGC 59.615 50.000 26.43 0.00 41.71 3.56
2497 2522 1.662438 TTTCCGCGGGAATCAATGCC 61.662 55.000 27.83 0.00 41.71 4.40
2498 2523 2.828095 CCGCGGGAATCAATGCCA 60.828 61.111 20.10 0.00 40.15 4.92
2499 2524 2.413963 CCGCGGGAATCAATGCCAA 61.414 57.895 20.10 0.00 40.15 4.52
2500 2525 1.064621 CGCGGGAATCAATGCCAAG 59.935 57.895 0.00 0.00 40.15 3.61
2501 2526 1.375853 CGCGGGAATCAATGCCAAGA 61.376 55.000 0.00 0.00 40.15 3.02
2502 2527 0.101219 GCGGGAATCAATGCCAAGAC 59.899 55.000 0.00 0.00 40.15 3.01
2503 2528 1.755179 CGGGAATCAATGCCAAGACT 58.245 50.000 0.00 0.00 40.15 3.24
2504 2529 1.402968 CGGGAATCAATGCCAAGACTG 59.597 52.381 0.00 0.00 40.15 3.51
2505 2530 1.753073 GGGAATCAATGCCAAGACTGG 59.247 52.381 0.00 0.00 46.65 4.00
2516 2541 3.404773 AGACTGGCCAAGGCTACC 58.595 61.111 7.01 0.00 45.24 3.18
2517 2542 2.125106 GACTGGCCAAGGCTACCG 60.125 66.667 7.01 0.00 41.60 4.02
2518 2543 4.410400 ACTGGCCAAGGCTACCGC 62.410 66.667 7.01 0.00 41.60 5.68
2535 2560 4.473520 CGCCGGTCAGCCTCCATT 62.474 66.667 1.90 0.00 0.00 3.16
2536 2561 2.825836 GCCGGTCAGCCTCCATTG 60.826 66.667 1.90 0.00 0.00 2.82
2537 2562 2.989639 CCGGTCAGCCTCCATTGA 59.010 61.111 0.00 0.00 0.00 2.57
2538 2563 1.528824 CCGGTCAGCCTCCATTGAT 59.471 57.895 0.00 0.00 0.00 2.57
2539 2564 0.816825 CCGGTCAGCCTCCATTGATG 60.817 60.000 0.00 0.00 0.00 3.07
2540 2565 1.442526 CGGTCAGCCTCCATTGATGC 61.443 60.000 0.00 0.00 32.84 3.91
2541 2566 1.105759 GGTCAGCCTCCATTGATGCC 61.106 60.000 0.00 0.00 33.08 4.40
2542 2567 0.106819 GTCAGCCTCCATTGATGCCT 60.107 55.000 0.00 0.00 33.08 4.75
2543 2568 0.182061 TCAGCCTCCATTGATGCCTC 59.818 55.000 0.00 0.00 33.08 4.70
2544 2569 0.106868 CAGCCTCCATTGATGCCTCA 60.107 55.000 0.00 0.00 33.08 3.86
2545 2570 0.106819 AGCCTCCATTGATGCCTCAC 60.107 55.000 0.00 0.00 33.08 3.51
2546 2571 1.442526 GCCTCCATTGATGCCTCACG 61.443 60.000 0.00 0.00 0.00 4.35
2547 2572 0.816825 CCTCCATTGATGCCTCACGG 60.817 60.000 0.00 0.00 0.00 4.94
2548 2573 0.816825 CTCCATTGATGCCTCACGGG 60.817 60.000 6.75 4.77 38.36 5.28
2549 2574 1.077501 CCATTGATGCCTCACGGGT 60.078 57.895 0.00 0.00 37.43 5.28
2550 2575 1.378882 CCATTGATGCCTCACGGGTG 61.379 60.000 0.00 0.00 37.43 4.61
2551 2576 1.077501 ATTGATGCCTCACGGGTGG 60.078 57.895 0.08 0.08 37.43 4.61
2561 2586 4.988598 ACGGGTGGCGCAGTGAAG 62.989 66.667 10.83 0.00 0.00 3.02
2571 2596 4.680237 CAGTGAAGGCGCCACCGA 62.680 66.667 31.54 6.25 46.52 4.69
2572 2597 4.681978 AGTGAAGGCGCCACCGAC 62.682 66.667 31.54 18.76 46.52 4.79
2611 2636 3.792047 CACACGTCGCCTGGCATG 61.792 66.667 20.29 12.93 0.00 4.06
2642 2667 3.936203 CCCCCGCTGCGGCTATAA 61.936 66.667 34.33 0.00 46.86 0.98
2643 2668 2.110213 CCCCGCTGCGGCTATAAA 59.890 61.111 34.33 0.00 46.86 1.40
2644 2669 1.525077 CCCCGCTGCGGCTATAAAA 60.525 57.895 34.33 0.00 46.86 1.52
2645 2670 1.507141 CCCCGCTGCGGCTATAAAAG 61.507 60.000 34.33 18.00 46.86 2.27
2646 2671 1.507141 CCCGCTGCGGCTATAAAAGG 61.507 60.000 34.33 14.30 46.86 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.429359 ACAAACATGAATTGTGTTTAAAACTCA 57.571 25.926 16.91 0.00 45.24 3.41
11 12 9.160496 ACACATTTTACAAACATGAATTGTGTT 57.840 25.926 22.91 1.06 40.63 3.32
12 13 8.715191 ACACATTTTACAAACATGAATTGTGT 57.285 26.923 22.91 18.00 40.95 3.72
13 14 9.635632 GAACACATTTTACAAACATGAATTGTG 57.364 29.630 22.91 17.54 40.95 3.33
14 15 9.376075 TGAACACATTTTACAAACATGAATTGT 57.624 25.926 19.94 19.94 43.14 2.71
15 16 9.635632 GTGAACACATTTTACAAACATGAATTG 57.364 29.630 0.00 7.08 0.00 2.32
16 17 9.376075 TGTGAACACATTTTACAAACATGAATT 57.624 25.926 0.00 0.00 36.21 2.17
17 18 8.939201 TGTGAACACATTTTACAAACATGAAT 57.061 26.923 0.00 0.00 36.21 2.57
18 19 8.763049 TTGTGAACACATTTTACAAACATGAA 57.237 26.923 8.46 0.00 41.52 2.57
19 20 8.939201 ATTGTGAACACATTTTACAAACATGA 57.061 26.923 8.46 0.00 41.52 3.07
20 21 9.985318 AAATTGTGAACACATTTTACAAACATG 57.015 25.926 19.25 0.00 40.76 3.21
91 92 9.934190 CATTTTCTCAAAATTCCGAAAACAAAT 57.066 25.926 0.00 0.00 38.97 2.32
92 93 8.940952 ACATTTTCTCAAAATTCCGAAAACAAA 58.059 25.926 0.00 0.00 38.97 2.83
93 94 8.485976 ACATTTTCTCAAAATTCCGAAAACAA 57.514 26.923 0.00 0.00 38.97 2.83
94 95 8.485976 AACATTTTCTCAAAATTCCGAAAACA 57.514 26.923 0.00 0.00 38.97 2.83
95 96 9.209297 CAAACATTTTCTCAAAATTCCGAAAAC 57.791 29.630 0.00 0.00 38.97 2.43
96 97 8.394121 CCAAACATTTTCTCAAAATTCCGAAAA 58.606 29.630 0.00 0.00 38.97 2.29
97 98 7.550906 ACCAAACATTTTCTCAAAATTCCGAAA 59.449 29.630 0.00 0.00 38.97 3.46
98 99 7.044798 ACCAAACATTTTCTCAAAATTCCGAA 58.955 30.769 0.00 0.00 38.97 4.30
99 100 6.578023 ACCAAACATTTTCTCAAAATTCCGA 58.422 32.000 0.00 0.00 38.97 4.55
100 101 6.843069 ACCAAACATTTTCTCAAAATTCCG 57.157 33.333 0.00 0.00 38.97 4.30
104 105 9.844257 TCCAATAACCAAACATTTTCTCAAAAT 57.156 25.926 0.00 0.00 41.57 1.82
105 106 9.672673 TTCCAATAACCAAACATTTTCTCAAAA 57.327 25.926 0.00 0.00 34.41 2.44
106 107 9.672673 TTTCCAATAACCAAACATTTTCTCAAA 57.327 25.926 0.00 0.00 0.00 2.69
107 108 9.844257 ATTTCCAATAACCAAACATTTTCTCAA 57.156 25.926 0.00 0.00 0.00 3.02
108 109 9.844257 AATTTCCAATAACCAAACATTTTCTCA 57.156 25.926 0.00 0.00 0.00 3.27
116 117 8.897752 CCAAAGAAAATTTCCAATAACCAAACA 58.102 29.630 1.57 0.00 0.00 2.83
117 118 9.114952 TCCAAAGAAAATTTCCAATAACCAAAC 57.885 29.630 1.57 0.00 0.00 2.93
118 119 9.686683 TTCCAAAGAAAATTTCCAATAACCAAA 57.313 25.926 1.57 0.00 0.00 3.28
119 120 9.686683 TTTCCAAAGAAAATTTCCAATAACCAA 57.313 25.926 1.57 0.00 39.05 3.67
120 121 9.859152 ATTTCCAAAGAAAATTTCCAATAACCA 57.141 25.926 1.57 0.00 44.91 3.67
206 207 7.387948 ACAAGTCGCTACTATTGTGATCTTTTT 59.612 33.333 0.00 0.00 33.75 1.94
207 208 6.874134 ACAAGTCGCTACTATTGTGATCTTTT 59.126 34.615 0.00 0.00 33.75 2.27
208 209 6.398918 ACAAGTCGCTACTATTGTGATCTTT 58.601 36.000 0.00 0.00 33.75 2.52
209 210 5.967088 ACAAGTCGCTACTATTGTGATCTT 58.033 37.500 0.00 0.00 33.75 2.40
210 211 5.584253 ACAAGTCGCTACTATTGTGATCT 57.416 39.130 0.00 0.00 33.75 2.75
211 212 6.263344 TGTACAAGTCGCTACTATTGTGATC 58.737 40.000 6.08 0.00 33.75 2.92
212 213 6.127703 ACTGTACAAGTCGCTACTATTGTGAT 60.128 38.462 6.08 0.00 31.64 3.06
213 214 5.182570 ACTGTACAAGTCGCTACTATTGTGA 59.817 40.000 6.08 0.00 31.64 3.58
214 215 5.399858 ACTGTACAAGTCGCTACTATTGTG 58.600 41.667 6.08 0.00 31.64 3.33
215 216 5.640189 ACTGTACAAGTCGCTACTATTGT 57.360 39.130 0.00 1.83 31.64 2.71
216 217 7.012959 TCTACTGTACAAGTCGCTACTATTG 57.987 40.000 0.00 0.00 40.56 1.90
217 218 7.282675 ACATCTACTGTACAAGTCGCTACTATT 59.717 37.037 0.00 0.00 40.56 1.73
218 219 6.766944 ACATCTACTGTACAAGTCGCTACTAT 59.233 38.462 0.00 0.00 40.56 2.12
219 220 6.111382 ACATCTACTGTACAAGTCGCTACTA 58.889 40.000 0.00 0.00 40.56 1.82
220 221 4.942483 ACATCTACTGTACAAGTCGCTACT 59.058 41.667 0.00 0.00 40.56 2.57
221 222 5.232610 ACATCTACTGTACAAGTCGCTAC 57.767 43.478 0.00 0.00 40.56 3.58
222 223 4.033702 CGACATCTACTGTACAAGTCGCTA 59.966 45.833 7.66 0.00 40.41 4.26
223 224 3.181509 CGACATCTACTGTACAAGTCGCT 60.182 47.826 7.66 0.00 40.41 4.93
224 225 3.099362 CGACATCTACTGTACAAGTCGC 58.901 50.000 7.66 0.00 40.41 5.19
225 226 3.126514 ACCGACATCTACTGTACAAGTCG 59.873 47.826 11.96 11.96 44.74 4.18
226 227 4.413087 CACCGACATCTACTGTACAAGTC 58.587 47.826 0.00 0.00 40.56 3.01
227 228 3.192844 CCACCGACATCTACTGTACAAGT 59.807 47.826 0.00 0.07 43.40 3.16
228 229 3.428999 CCCACCGACATCTACTGTACAAG 60.429 52.174 0.00 0.00 38.54 3.16
229 230 2.494471 CCCACCGACATCTACTGTACAA 59.506 50.000 0.00 0.00 38.54 2.41
230 231 2.097036 CCCACCGACATCTACTGTACA 58.903 52.381 0.00 0.00 38.54 2.90
231 232 1.202382 GCCCACCGACATCTACTGTAC 60.202 57.143 0.00 0.00 38.54 2.90
232 233 1.108776 GCCCACCGACATCTACTGTA 58.891 55.000 0.00 0.00 38.54 2.74
233 234 0.902984 TGCCCACCGACATCTACTGT 60.903 55.000 0.00 0.00 42.15 3.55
234 235 0.179100 CTGCCCACCGACATCTACTG 60.179 60.000 0.00 0.00 0.00 2.74
235 236 1.330655 CCTGCCCACCGACATCTACT 61.331 60.000 0.00 0.00 0.00 2.57
236 237 1.144057 CCTGCCCACCGACATCTAC 59.856 63.158 0.00 0.00 0.00 2.59
237 238 2.731571 GCCTGCCCACCGACATCTA 61.732 63.158 0.00 0.00 0.00 1.98
238 239 4.101448 GCCTGCCCACCGACATCT 62.101 66.667 0.00 0.00 0.00 2.90
256 257 4.711949 AAGGCTGTCGCTGGCTGG 62.712 66.667 11.81 0.00 38.13 4.85
257 258 3.429141 CAAGGCTGTCGCTGGCTG 61.429 66.667 11.81 0.00 38.13 4.85
258 259 3.946201 ACAAGGCTGTCGCTGGCT 61.946 61.111 6.90 6.90 39.59 4.75
259 260 3.730761 CACAAGGCTGTCGCTGGC 61.731 66.667 0.00 3.06 31.64 4.85
260 261 3.730761 GCACAAGGCTGTCGCTGG 61.731 66.667 0.00 0.00 40.25 4.85
261 262 4.081030 CGCACAAGGCTGTCGCTG 62.081 66.667 0.00 0.00 41.67 5.18
262 263 3.807631 TTCGCACAAGGCTGTCGCT 62.808 57.895 0.00 0.00 41.67 4.93
263 264 2.770587 CTTTCGCACAAGGCTGTCGC 62.771 60.000 0.00 0.00 41.67 5.19
264 265 1.205064 CTTTCGCACAAGGCTGTCG 59.795 57.895 0.00 0.00 41.67 4.35
265 266 1.081840 GCTTTCGCACAAGGCTGTC 60.082 57.895 0.00 0.00 41.67 3.51
266 267 1.510480 GAGCTTTCGCACAAGGCTGT 61.510 55.000 6.73 0.00 41.67 4.40
267 268 1.208614 GAGCTTTCGCACAAGGCTG 59.791 57.895 6.73 0.00 41.67 4.85
268 269 1.072159 AGAGCTTTCGCACAAGGCT 59.928 52.632 1.98 1.98 41.67 4.58
269 270 1.208614 CAGAGCTTTCGCACAAGGC 59.791 57.895 0.00 0.00 39.10 4.35
270 271 0.603707 TCCAGAGCTTTCGCACAAGG 60.604 55.000 0.00 0.00 39.10 3.61
271 272 0.514691 GTCCAGAGCTTTCGCACAAG 59.485 55.000 0.00 0.00 39.10 3.16
272 273 0.106708 AGTCCAGAGCTTTCGCACAA 59.893 50.000 0.00 0.00 39.10 3.33
273 274 0.966179 TAGTCCAGAGCTTTCGCACA 59.034 50.000 0.00 0.00 39.10 4.57
274 275 2.301577 ATAGTCCAGAGCTTTCGCAC 57.698 50.000 0.00 0.00 39.10 5.34
275 276 3.002791 CAAATAGTCCAGAGCTTTCGCA 58.997 45.455 0.00 0.00 39.10 5.10
276 277 2.223135 GCAAATAGTCCAGAGCTTTCGC 60.223 50.000 0.00 0.00 0.00 4.70
277 278 2.352960 GGCAAATAGTCCAGAGCTTTCG 59.647 50.000 0.00 0.00 0.00 3.46
278 279 2.352960 CGGCAAATAGTCCAGAGCTTTC 59.647 50.000 0.00 0.00 0.00 2.62
279 280 2.359900 CGGCAAATAGTCCAGAGCTTT 58.640 47.619 0.00 0.00 0.00 3.51
280 281 2.014068 GCGGCAAATAGTCCAGAGCTT 61.014 52.381 0.00 0.00 0.00 3.74
281 282 0.462759 GCGGCAAATAGTCCAGAGCT 60.463 55.000 0.00 0.00 0.00 4.09
282 283 0.744414 TGCGGCAAATAGTCCAGAGC 60.744 55.000 0.00 0.00 0.00 4.09
283 284 1.293924 CTGCGGCAAATAGTCCAGAG 58.706 55.000 3.44 0.00 0.00 3.35
284 285 0.744414 GCTGCGGCAAATAGTCCAGA 60.744 55.000 14.08 0.00 38.54 3.86
285 286 1.026182 TGCTGCGGCAAATAGTCCAG 61.026 55.000 20.23 0.00 46.36 3.86
286 287 1.002746 TGCTGCGGCAAATAGTCCA 60.003 52.632 20.23 0.00 46.36 4.02
287 288 3.903783 TGCTGCGGCAAATAGTCC 58.096 55.556 20.23 0.00 46.36 3.85
299 300 1.299620 CCTATTTGCCGCATGCTGC 60.300 57.895 25.25 25.25 42.00 5.25
300 301 0.309922 CTCCTATTTGCCGCATGCTG 59.690 55.000 17.13 10.87 42.00 4.41
301 302 1.450531 GCTCCTATTTGCCGCATGCT 61.451 55.000 17.13 0.00 42.00 3.79
302 303 1.008079 GCTCCTATTTGCCGCATGC 60.008 57.895 7.91 7.91 41.77 4.06
303 304 0.590195 GAGCTCCTATTTGCCGCATG 59.410 55.000 0.87 0.00 0.00 4.06
304 305 0.536006 GGAGCTCCTATTTGCCGCAT 60.536 55.000 26.25 0.00 0.00 4.73
305 306 1.153168 GGAGCTCCTATTTGCCGCA 60.153 57.895 26.25 0.00 0.00 5.69
306 307 1.894282 GGGAGCTCCTATTTGCCGC 60.894 63.158 31.36 8.41 35.95 6.53
307 308 1.048601 TAGGGAGCTCCTATTTGCCG 58.951 55.000 31.36 0.00 45.98 5.69
308 309 3.577805 TTTAGGGAGCTCCTATTTGCC 57.422 47.619 31.36 13.49 46.76 4.52
309 310 5.380900 AGATTTTAGGGAGCTCCTATTTGC 58.619 41.667 31.36 14.24 46.76 3.68
310 311 7.557719 TCAAAGATTTTAGGGAGCTCCTATTTG 59.442 37.037 31.36 25.89 46.76 2.32
311 312 7.558081 GTCAAAGATTTTAGGGAGCTCCTATTT 59.442 37.037 31.36 17.01 46.76 1.40
312 313 7.057264 GTCAAAGATTTTAGGGAGCTCCTATT 58.943 38.462 31.36 19.23 46.76 1.73
313 314 6.596621 GTCAAAGATTTTAGGGAGCTCCTAT 58.403 40.000 31.36 22.08 46.76 2.57
314 315 5.395324 CGTCAAAGATTTTAGGGAGCTCCTA 60.395 44.000 31.36 18.44 45.98 2.94
316 317 3.623510 CGTCAAAGATTTTAGGGAGCTCC 59.376 47.826 25.59 25.59 0.00 4.70
317 318 3.623510 CCGTCAAAGATTTTAGGGAGCTC 59.376 47.826 4.71 4.71 0.00 4.09
318 319 3.263425 TCCGTCAAAGATTTTAGGGAGCT 59.737 43.478 0.00 0.00 0.00 4.09
319 320 3.606687 TCCGTCAAAGATTTTAGGGAGC 58.393 45.455 0.00 0.00 0.00 4.70
320 321 4.833390 ACTCCGTCAAAGATTTTAGGGAG 58.167 43.478 19.38 19.38 45.22 4.30
321 322 4.903045 ACTCCGTCAAAGATTTTAGGGA 57.097 40.909 2.09 2.09 30.37 4.20
322 323 5.731591 AGTACTCCGTCAAAGATTTTAGGG 58.268 41.667 0.00 0.00 0.00 3.53
323 324 7.545489 AGTAGTACTCCGTCAAAGATTTTAGG 58.455 38.462 0.00 0.00 0.00 2.69
324 325 8.983307 AAGTAGTACTCCGTCAAAGATTTTAG 57.017 34.615 2.58 0.00 0.00 1.85
325 326 9.199982 CAAAGTAGTACTCCGTCAAAGATTTTA 57.800 33.333 2.58 0.00 0.00 1.52
326 327 7.929785 TCAAAGTAGTACTCCGTCAAAGATTTT 59.070 33.333 2.58 0.00 0.00 1.82
327 328 7.384387 GTCAAAGTAGTACTCCGTCAAAGATTT 59.616 37.037 2.58 0.00 0.00 2.17
328 329 6.867293 GTCAAAGTAGTACTCCGTCAAAGATT 59.133 38.462 2.58 0.00 0.00 2.40
329 330 6.015688 TGTCAAAGTAGTACTCCGTCAAAGAT 60.016 38.462 2.58 0.00 0.00 2.40
330 331 5.300034 TGTCAAAGTAGTACTCCGTCAAAGA 59.700 40.000 2.58 0.00 0.00 2.52
331 332 5.526115 TGTCAAAGTAGTACTCCGTCAAAG 58.474 41.667 2.58 0.00 0.00 2.77
332 333 5.518848 TGTCAAAGTAGTACTCCGTCAAA 57.481 39.130 2.58 0.00 0.00 2.69
333 334 5.336213 GGATGTCAAAGTAGTACTCCGTCAA 60.336 44.000 2.58 0.00 0.00 3.18
334 335 4.157289 GGATGTCAAAGTAGTACTCCGTCA 59.843 45.833 2.58 2.72 0.00 4.35
335 336 4.157289 TGGATGTCAAAGTAGTACTCCGTC 59.843 45.833 2.58 3.65 0.00 4.79
336 337 4.084287 TGGATGTCAAAGTAGTACTCCGT 58.916 43.478 2.58 0.00 0.00 4.69
337 338 4.713824 TGGATGTCAAAGTAGTACTCCG 57.286 45.455 2.58 0.00 0.00 4.63
338 339 4.863131 CGTTGGATGTCAAAGTAGTACTCC 59.137 45.833 2.58 0.00 37.08 3.85
339 340 4.863131 CCGTTGGATGTCAAAGTAGTACTC 59.137 45.833 2.58 0.00 37.08 2.59
340 341 4.525487 TCCGTTGGATGTCAAAGTAGTACT 59.475 41.667 0.00 0.00 37.08 2.73
341 342 4.813027 TCCGTTGGATGTCAAAGTAGTAC 58.187 43.478 0.00 0.00 37.08 2.73
342 343 4.525487 ACTCCGTTGGATGTCAAAGTAGTA 59.475 41.667 0.00 0.00 33.78 1.82
343 344 3.323979 ACTCCGTTGGATGTCAAAGTAGT 59.676 43.478 0.00 0.00 37.08 2.73
344 345 3.926616 ACTCCGTTGGATGTCAAAGTAG 58.073 45.455 0.00 0.00 37.08 2.57
345 346 3.322541 TGACTCCGTTGGATGTCAAAGTA 59.677 43.478 12.58 0.00 37.13 2.24
346 347 2.104111 TGACTCCGTTGGATGTCAAAGT 59.896 45.455 12.58 0.00 37.13 2.66
347 348 2.766313 TGACTCCGTTGGATGTCAAAG 58.234 47.619 12.58 0.00 37.13 2.77
348 349 2.875933 GTTGACTCCGTTGGATGTCAAA 59.124 45.455 21.48 10.96 43.73 2.69
349 350 2.489971 GTTGACTCCGTTGGATGTCAA 58.510 47.619 18.47 18.47 42.04 3.18
350 351 1.604438 CGTTGACTCCGTTGGATGTCA 60.604 52.381 11.54 11.54 37.74 3.58
351 352 1.068474 CGTTGACTCCGTTGGATGTC 58.932 55.000 7.88 7.88 33.59 3.06
352 353 0.320421 CCGTTGACTCCGTTGGATGT 60.320 55.000 0.00 0.00 0.00 3.06
353 354 0.320421 ACCGTTGACTCCGTTGGATG 60.320 55.000 0.00 0.00 0.00 3.51
354 355 0.037605 GACCGTTGACTCCGTTGGAT 60.038 55.000 0.00 0.00 0.00 3.41
355 356 1.364901 GACCGTTGACTCCGTTGGA 59.635 57.895 0.00 0.00 0.00 3.53
356 357 1.666872 GGACCGTTGACTCCGTTGG 60.667 63.158 0.00 0.00 0.00 3.77
357 358 0.944311 CTGGACCGTTGACTCCGTTG 60.944 60.000 0.00 0.00 0.00 4.10
358 359 1.366366 CTGGACCGTTGACTCCGTT 59.634 57.895 0.00 0.00 0.00 4.44
359 360 3.048602 CTGGACCGTTGACTCCGT 58.951 61.111 0.00 0.00 0.00 4.69
360 361 2.432628 GCTGGACCGTTGACTCCG 60.433 66.667 0.00 0.00 0.00 4.63
361 362 2.047179 GGCTGGACCGTTGACTCC 60.047 66.667 0.00 0.00 0.00 3.85
362 363 0.250338 AAAGGCTGGACCGTTGACTC 60.250 55.000 0.00 0.00 46.52 3.36
363 364 0.250338 GAAAGGCTGGACCGTTGACT 60.250 55.000 0.00 0.00 46.52 3.41
364 365 0.250338 AGAAAGGCTGGACCGTTGAC 60.250 55.000 0.00 0.00 46.52 3.18
365 366 0.250295 CAGAAAGGCTGGACCGTTGA 60.250 55.000 0.00 0.00 46.52 3.18
366 367 2.247790 CAGAAAGGCTGGACCGTTG 58.752 57.895 0.00 0.00 46.52 4.10
367 368 4.800554 CAGAAAGGCTGGACCGTT 57.199 55.556 0.00 0.00 46.52 4.44
379 380 5.746990 TTGGGTCCTTTCAAAAACAGAAA 57.253 34.783 0.00 0.00 34.16 2.52
380 381 5.247337 AGTTTGGGTCCTTTCAAAAACAGAA 59.753 36.000 0.00 0.00 35.08 3.02
381 382 4.775253 AGTTTGGGTCCTTTCAAAAACAGA 59.225 37.500 0.00 0.00 35.08 3.41
382 383 5.084818 AGTTTGGGTCCTTTCAAAAACAG 57.915 39.130 0.00 0.00 35.08 3.16
383 384 5.491323 AAGTTTGGGTCCTTTCAAAAACA 57.509 34.783 0.00 0.00 35.08 2.83
384 385 5.353123 GGAAAGTTTGGGTCCTTTCAAAAAC 59.647 40.000 12.56 0.00 45.31 2.43
385 386 5.249622 AGGAAAGTTTGGGTCCTTTCAAAAA 59.750 36.000 12.56 0.00 45.31 1.94
386 387 4.780554 AGGAAAGTTTGGGTCCTTTCAAAA 59.219 37.500 12.56 0.00 45.31 2.44
387 388 4.161377 CAGGAAAGTTTGGGTCCTTTCAAA 59.839 41.667 12.56 0.00 45.31 2.69
388 389 3.704061 CAGGAAAGTTTGGGTCCTTTCAA 59.296 43.478 12.56 0.00 45.31 2.69
389 390 3.295973 CAGGAAAGTTTGGGTCCTTTCA 58.704 45.455 12.56 0.00 45.31 2.69
390 391 3.296854 ACAGGAAAGTTTGGGTCCTTTC 58.703 45.455 0.00 0.00 43.66 2.62
391 392 3.296854 GACAGGAAAGTTTGGGTCCTTT 58.703 45.455 0.00 0.00 39.87 3.11
392 393 2.748465 CGACAGGAAAGTTTGGGTCCTT 60.748 50.000 0.00 0.00 39.87 3.36
393 394 1.202770 CGACAGGAAAGTTTGGGTCCT 60.203 52.381 0.00 0.00 42.72 3.85
394 395 1.235724 CGACAGGAAAGTTTGGGTCC 58.764 55.000 0.00 0.00 0.00 4.46
395 396 1.963172 ACGACAGGAAAGTTTGGGTC 58.037 50.000 0.00 0.00 0.00 4.46
396 397 2.021457 CAACGACAGGAAAGTTTGGGT 58.979 47.619 0.00 0.00 0.00 4.51
397 398 1.336755 CCAACGACAGGAAAGTTTGGG 59.663 52.381 0.00 0.00 0.00 4.12
398 399 1.269051 GCCAACGACAGGAAAGTTTGG 60.269 52.381 0.00 0.00 0.00 3.28
399 400 1.403679 TGCCAACGACAGGAAAGTTTG 59.596 47.619 0.00 0.00 0.00 2.93
400 401 1.404035 GTGCCAACGACAGGAAAGTTT 59.596 47.619 0.00 0.00 0.00 2.66
401 402 1.021968 GTGCCAACGACAGGAAAGTT 58.978 50.000 0.00 0.00 0.00 2.66
402 403 0.180406 AGTGCCAACGACAGGAAAGT 59.820 50.000 0.00 0.00 0.00 2.66
403 404 1.002468 CAAGTGCCAACGACAGGAAAG 60.002 52.381 0.00 0.00 0.00 2.62
404 405 1.021202 CAAGTGCCAACGACAGGAAA 58.979 50.000 0.00 0.00 0.00 3.13
405 406 0.817634 CCAAGTGCCAACGACAGGAA 60.818 55.000 0.00 0.00 0.00 3.36
406 407 1.227823 CCAAGTGCCAACGACAGGA 60.228 57.895 0.00 0.00 0.00 3.86
407 408 2.260869 CCCAAGTGCCAACGACAGG 61.261 63.158 0.00 0.00 0.00 4.00
408 409 2.260869 CCCCAAGTGCCAACGACAG 61.261 63.158 0.00 0.00 0.00 3.51
409 410 2.203280 CCCCAAGTGCCAACGACA 60.203 61.111 0.00 0.00 0.00 4.35
410 411 2.112297 TCCCCAAGTGCCAACGAC 59.888 61.111 0.00 0.00 0.00 4.34
411 412 2.112297 GTCCCCAAGTGCCAACGA 59.888 61.111 0.00 0.00 0.00 3.85
412 413 2.203280 TGTCCCCAAGTGCCAACG 60.203 61.111 0.00 0.00 0.00 4.10
413 414 0.109723 TACTGTCCCCAAGTGCCAAC 59.890 55.000 0.00 0.00 0.00 3.77
414 415 1.004277 GATACTGTCCCCAAGTGCCAA 59.996 52.381 0.00 0.00 0.00 4.52
415 416 0.618458 GATACTGTCCCCAAGTGCCA 59.382 55.000 0.00 0.00 0.00 4.92
416 417 0.107165 GGATACTGTCCCCAAGTGCC 60.107 60.000 0.00 0.00 41.50 5.01
417 418 3.478540 GGATACTGTCCCCAAGTGC 57.521 57.895 0.00 0.00 41.50 4.40
426 427 1.226888 GACGGCGGTGGATACTGTC 60.227 63.158 13.24 0.00 35.54 3.51
427 428 2.890371 GACGGCGGTGGATACTGT 59.110 61.111 13.24 0.00 35.54 3.55
428 429 2.278596 CGACGGCGGTGGATACTG 60.279 66.667 13.24 0.00 36.22 2.74
533 535 2.414594 GCCTGATTGATTGGCCGC 59.585 61.111 0.00 0.00 40.71 6.53
703 706 0.252284 ACTCCGTTCTCCCTCCACAT 60.252 55.000 0.00 0.00 0.00 3.21
704 707 1.155390 ACTCCGTTCTCCCTCCACA 59.845 57.895 0.00 0.00 0.00 4.17
719 722 1.941812 CAAACTGCACCGACCACTC 59.058 57.895 0.00 0.00 0.00 3.51
769 772 2.771762 GCAGGGAGAGAGGGGCAT 60.772 66.667 0.00 0.00 0.00 4.40
826 829 2.220615 CTCCGTCCGCATGTGGTGTA 62.221 60.000 24.28 2.90 0.00 2.90
828 831 2.815211 CTCCGTCCGCATGTGGTG 60.815 66.667 24.28 17.31 0.00 4.17
845 848 1.990799 TCCACTATATATGCACGCGC 58.009 50.000 5.73 0.00 39.24 6.86
864 867 1.533731 CCAAGTTGCGTATCCGTTGTT 59.466 47.619 0.00 0.00 36.15 2.83
895 898 3.994204 TGTACTAGAGTTGCGTGTCAA 57.006 42.857 0.00 0.00 0.00 3.18
896 899 4.514781 AATGTACTAGAGTTGCGTGTCA 57.485 40.909 0.00 0.00 0.00 3.58
897 900 4.684703 ACAAATGTACTAGAGTTGCGTGTC 59.315 41.667 0.00 0.00 0.00 3.67
898 901 4.628074 ACAAATGTACTAGAGTTGCGTGT 58.372 39.130 0.00 0.00 0.00 4.49
899 902 4.684242 TGACAAATGTACTAGAGTTGCGTG 59.316 41.667 0.00 0.00 0.00 5.34
900 903 4.878439 TGACAAATGTACTAGAGTTGCGT 58.122 39.130 0.00 0.00 0.00 5.24
902 905 5.176958 ACGTTGACAAATGTACTAGAGTTGC 59.823 40.000 0.00 0.00 33.64 4.17
903 906 6.641314 AGACGTTGACAAATGTACTAGAGTTG 59.359 38.462 0.00 0.00 35.61 3.16
904 907 6.746120 AGACGTTGACAAATGTACTAGAGTT 58.254 36.000 0.00 0.00 35.61 3.01
905 908 6.016527 TGAGACGTTGACAAATGTACTAGAGT 60.017 38.462 0.00 0.00 35.61 3.24
906 909 6.305877 GTGAGACGTTGACAAATGTACTAGAG 59.694 42.308 0.00 0.00 35.61 2.43
907 910 6.147581 GTGAGACGTTGACAAATGTACTAGA 58.852 40.000 0.00 0.00 35.61 2.43
910 913 3.734231 CGTGAGACGTTGACAAATGTACT 59.266 43.478 0.00 0.00 35.61 2.73
963 972 4.790861 GTTCGGTCCCTCGACGGC 62.791 72.222 0.00 0.00 40.17 5.68
999 1008 4.442706 AGATTGGCTTACTTACCGTCATG 58.557 43.478 0.00 0.00 0.00 3.07
1014 1023 1.144936 CGTGAGAGGGGAGATTGGC 59.855 63.158 0.00 0.00 0.00 4.52
1034 1043 3.010250 ACTTTCCCTAGATCCCAAACCAC 59.990 47.826 0.00 0.00 0.00 4.16
1108 1117 0.812811 CCACGATCTGGCAGGTGATG 60.813 60.000 19.75 11.31 31.36 3.07
1121 1130 1.811266 GCACGCACATCTCCACGAT 60.811 57.895 0.00 0.00 0.00 3.73
1262 1271 1.406065 CCGGGCCAGATCAGATCACT 61.406 60.000 13.14 0.00 0.00 3.41
1277 1286 0.036671 GTCCACTCCTGTAAACCGGG 60.037 60.000 6.32 0.00 41.48 5.73
1482 1491 3.792736 GCGTACATCTGGGCCCCA 61.793 66.667 22.27 0.47 0.00 4.96
1512 1521 3.151710 TACGAGGATGTGGGCCCG 61.152 66.667 19.37 4.54 0.00 6.13
1521 1530 4.703575 TGCTTGTAGTAGTTGTACGAGGAT 59.296 41.667 0.00 0.00 33.86 3.24
1644 1653 1.487482 ATCGCGTGGATCACATTACG 58.513 50.000 5.77 0.00 39.37 3.18
1708 1717 8.770828 GCAAAGTGTACTTTATTTACAGAGACA 58.229 33.333 9.47 0.00 43.72 3.41
1709 1718 8.989980 AGCAAAGTGTACTTTATTTACAGAGAC 58.010 33.333 9.47 0.00 43.72 3.36
1755 1765 2.683362 TGAGAGCGATCGTTGTATCAGT 59.317 45.455 17.81 0.00 0.00 3.41
1756 1766 3.340337 TGAGAGCGATCGTTGTATCAG 57.660 47.619 17.81 0.00 0.00 2.90
1757 1767 3.775661 TTGAGAGCGATCGTTGTATCA 57.224 42.857 17.81 11.61 0.00 2.15
1758 1768 6.749216 TTATTTGAGAGCGATCGTTGTATC 57.251 37.500 17.81 9.17 0.00 2.24
1759 1769 7.148641 AGATTATTTGAGAGCGATCGTTGTAT 58.851 34.615 17.81 2.62 0.00 2.29
1760 1770 6.504398 AGATTATTTGAGAGCGATCGTTGTA 58.496 36.000 17.81 0.00 0.00 2.41
1801 1811 3.955291 CCACTCAGATGGCTACTCG 57.045 57.895 0.00 0.00 31.52 4.18
1850 1860 2.904866 GGCACGCCACAGGAACAA 60.905 61.111 2.36 0.00 35.81 2.83
1862 1879 2.742053 AGTTGCTTTGTATAGTGGCACG 59.258 45.455 12.71 0.00 32.47 5.34
1887 1912 0.035036 TTTGTACCACCAATCCGCGA 59.965 50.000 8.23 0.00 0.00 5.87
1915 1940 6.551227 GGGAATAAAGTATGGGAGCAAAGAAT 59.449 38.462 0.00 0.00 0.00 2.40
1918 1943 5.300286 CAGGGAATAAAGTATGGGAGCAAAG 59.700 44.000 0.00 0.00 0.00 2.77
1925 1950 4.788925 TGGACAGGGAATAAAGTATGGG 57.211 45.455 0.00 0.00 0.00 4.00
1931 1956 5.949354 TGTGGTTATTGGACAGGGAATAAAG 59.051 40.000 0.00 0.00 0.00 1.85
1986 2011 2.364632 CATTCTTGGCAACGGTATGGA 58.635 47.619 0.00 0.00 42.51 3.41
1998 2023 1.669779 GCTGAGCTAGTGCATTCTTGG 59.330 52.381 0.00 0.00 42.74 3.61
2016 2041 0.621571 TGGAGATGCCCTAACCTGCT 60.622 55.000 0.00 0.00 34.97 4.24
2019 2044 1.348775 GGCTGGAGATGCCCTAACCT 61.349 60.000 0.00 0.00 44.32 3.50
2331 2356 1.487558 GGCATCCATTTCAGCCCAAAT 59.512 47.619 0.00 0.00 41.25 2.32
2332 2357 0.903942 GGCATCCATTTCAGCCCAAA 59.096 50.000 0.00 0.00 41.25 3.28
2333 2358 1.321805 CGGCATCCATTTCAGCCCAA 61.322 55.000 0.00 0.00 44.18 4.12
2334 2359 1.753848 CGGCATCCATTTCAGCCCA 60.754 57.895 0.00 0.00 44.18 5.36
2335 2360 2.492773 CCGGCATCCATTTCAGCCC 61.493 63.158 0.00 0.00 44.18 5.19
2336 2361 3.122850 CCGGCATCCATTTCAGCC 58.877 61.111 0.00 0.00 43.61 4.85
2337 2362 2.345880 CTGCCGGCATCCATTTCAGC 62.346 60.000 32.87 0.00 0.00 4.26
2338 2363 0.749091 TCTGCCGGCATCCATTTCAG 60.749 55.000 32.87 15.30 0.00 3.02
2339 2364 1.031571 GTCTGCCGGCATCCATTTCA 61.032 55.000 32.87 2.72 0.00 2.69
2340 2365 1.728490 GGTCTGCCGGCATCCATTTC 61.728 60.000 32.87 14.32 0.00 2.17
2341 2366 1.754234 GGTCTGCCGGCATCCATTT 60.754 57.895 32.87 0.00 0.00 2.32
2342 2367 2.124151 GGTCTGCCGGCATCCATT 60.124 61.111 32.87 0.00 0.00 3.16
2343 2368 4.195334 GGGTCTGCCGGCATCCAT 62.195 66.667 35.32 0.00 34.97 3.41
2345 2370 4.864334 CTGGGTCTGCCGGCATCC 62.864 72.222 32.87 31.49 34.97 3.51
2346 2371 4.864334 CCTGGGTCTGCCGGCATC 62.864 72.222 32.87 24.75 34.97 3.91
2354 2379 4.410400 GGGTTCGGCCTGGGTCTG 62.410 72.222 0.00 0.00 37.43 3.51
2374 2399 3.052082 CAAGCGCTCCCCAGTGTG 61.052 66.667 12.06 0.00 32.14 3.82
2375 2400 4.335647 CCAAGCGCTCCCCAGTGT 62.336 66.667 12.06 0.00 32.14 3.55
2399 2424 4.693525 GCCAAAACCGCGTTCCCG 62.694 66.667 4.92 0.00 37.07 5.14
2400 2425 4.693525 CGCCAAAACCGCGTTCCC 62.694 66.667 4.92 0.00 44.55 3.97
2407 2432 3.904233 CTCGTTCGCGCCAAAACCG 62.904 63.158 0.00 0.00 41.05 4.44
2408 2433 2.127383 CTCGTTCGCGCCAAAACC 60.127 61.111 0.00 0.00 41.05 3.27
2409 2434 1.908066 ATCCTCGTTCGCGCCAAAAC 61.908 55.000 0.00 3.17 41.05 2.43
2410 2435 1.669760 ATCCTCGTTCGCGCCAAAA 60.670 52.632 0.00 0.00 41.05 2.44
2411 2436 2.047655 ATCCTCGTTCGCGCCAAA 60.048 55.556 0.00 0.00 41.05 3.28
2412 2437 2.813474 CATCCTCGTTCGCGCCAA 60.813 61.111 0.00 0.00 41.05 4.52
2413 2438 4.812476 CCATCCTCGTTCGCGCCA 62.812 66.667 0.00 0.00 41.05 5.69
2418 2443 4.891727 CGGGCCCATCCTCGTTCG 62.892 72.222 24.92 0.00 34.39 3.95
2435 2460 2.505118 GTGTCTCGCTGACTCGGC 60.505 66.667 0.00 0.00 45.54 5.54
2436 2461 2.179517 GGTGTCTCGCTGACTCGG 59.820 66.667 9.20 0.00 45.54 4.63
2437 2462 1.442857 GTGGTGTCTCGCTGACTCG 60.443 63.158 9.20 0.00 45.54 4.18
2438 2463 0.315568 AAGTGGTGTCTCGCTGACTC 59.684 55.000 9.20 6.09 45.54 3.36
2439 2464 0.753262 AAAGTGGTGTCTCGCTGACT 59.247 50.000 9.20 0.00 45.54 3.41
2440 2465 0.861837 CAAAGTGGTGTCTCGCTGAC 59.138 55.000 2.16 2.16 45.54 3.51
2441 2466 0.464036 ACAAAGTGGTGTCTCGCTGA 59.536 50.000 0.00 0.00 0.00 4.26
2442 2467 1.299541 AACAAAGTGGTGTCTCGCTG 58.700 50.000 0.00 0.00 0.00 5.18
2443 2468 1.940613 GAAACAAAGTGGTGTCTCGCT 59.059 47.619 0.00 0.00 0.00 4.93
2444 2469 1.002792 GGAAACAAAGTGGTGTCTCGC 60.003 52.381 0.00 0.00 0.00 5.03
2445 2470 1.602377 GGGAAACAAAGTGGTGTCTCG 59.398 52.381 0.00 0.00 0.00 4.04
2446 2471 2.879026 GAGGGAAACAAAGTGGTGTCTC 59.121 50.000 0.00 0.00 0.00 3.36
2447 2472 2.241176 TGAGGGAAACAAAGTGGTGTCT 59.759 45.455 0.00 0.00 0.00 3.41
2448 2473 2.650322 TGAGGGAAACAAAGTGGTGTC 58.350 47.619 0.00 0.00 0.00 3.67
2449 2474 2.818751 TGAGGGAAACAAAGTGGTGT 57.181 45.000 0.00 0.00 0.00 4.16
2450 2475 2.226437 CGATGAGGGAAACAAAGTGGTG 59.774 50.000 0.00 0.00 0.00 4.17
2451 2476 2.504367 CGATGAGGGAAACAAAGTGGT 58.496 47.619 0.00 0.00 0.00 4.16
2452 2477 1.200020 GCGATGAGGGAAACAAAGTGG 59.800 52.381 0.00 0.00 0.00 4.00
2453 2478 1.200020 GGCGATGAGGGAAACAAAGTG 59.800 52.381 0.00 0.00 0.00 3.16
2454 2479 1.073923 AGGCGATGAGGGAAACAAAGT 59.926 47.619 0.00 0.00 0.00 2.66
2455 2480 1.740025 GAGGCGATGAGGGAAACAAAG 59.260 52.381 0.00 0.00 0.00 2.77
2456 2481 1.821216 GAGGCGATGAGGGAAACAAA 58.179 50.000 0.00 0.00 0.00 2.83
2457 2482 0.391130 CGAGGCGATGAGGGAAACAA 60.391 55.000 0.00 0.00 0.00 2.83
2458 2483 1.218047 CGAGGCGATGAGGGAAACA 59.782 57.895 0.00 0.00 0.00 2.83
2459 2484 0.105039 ATCGAGGCGATGAGGGAAAC 59.895 55.000 1.05 0.00 45.24 2.78
2460 2485 0.830648 AATCGAGGCGATGAGGGAAA 59.169 50.000 2.84 0.00 46.30 3.13
2461 2486 0.830648 AAATCGAGGCGATGAGGGAA 59.169 50.000 2.84 0.00 46.30 3.97
2462 2487 0.389391 GAAATCGAGGCGATGAGGGA 59.611 55.000 2.84 0.00 46.30 4.20
2463 2488 0.601311 GGAAATCGAGGCGATGAGGG 60.601 60.000 2.84 0.00 46.30 4.30
2464 2489 0.941463 CGGAAATCGAGGCGATGAGG 60.941 60.000 2.84 0.00 46.30 3.86
2465 2490 1.552348 GCGGAAATCGAGGCGATGAG 61.552 60.000 2.84 0.00 46.30 2.90
2466 2491 1.591594 GCGGAAATCGAGGCGATGA 60.592 57.895 2.84 0.00 46.30 2.92
2467 2492 2.931386 GCGGAAATCGAGGCGATG 59.069 61.111 2.84 0.00 46.30 3.84
2473 2498 0.529773 TGATTCCCGCGGAAATCGAG 60.530 55.000 28.67 10.65 45.41 4.04
2474 2499 0.108089 TTGATTCCCGCGGAAATCGA 60.108 50.000 28.67 25.47 45.41 3.59
2475 2500 0.944386 ATTGATTCCCGCGGAAATCG 59.056 50.000 28.67 12.14 45.41 3.34
2476 2501 1.600413 GCATTGATTCCCGCGGAAATC 60.600 52.381 28.19 28.19 45.41 2.17
2477 2502 0.385390 GCATTGATTCCCGCGGAAAT 59.615 50.000 30.73 21.15 45.41 2.17
2478 2503 1.662438 GGCATTGATTCCCGCGGAAA 61.662 55.000 30.73 15.47 45.41 3.13
2479 2504 2.118404 GGCATTGATTCCCGCGGAA 61.118 57.895 30.73 19.41 46.39 4.30
2480 2505 2.515991 GGCATTGATTCCCGCGGA 60.516 61.111 30.73 8.21 0.00 5.54
2481 2506 2.340453 CTTGGCATTGATTCCCGCGG 62.340 60.000 21.04 21.04 0.00 6.46
2482 2507 1.064621 CTTGGCATTGATTCCCGCG 59.935 57.895 0.00 0.00 0.00 6.46
2483 2508 0.101219 GTCTTGGCATTGATTCCCGC 59.899 55.000 0.00 0.00 0.00 6.13
2484 2509 1.402968 CAGTCTTGGCATTGATTCCCG 59.597 52.381 0.00 0.00 0.00 5.14
2485 2510 1.753073 CCAGTCTTGGCATTGATTCCC 59.247 52.381 0.00 0.00 37.73 3.97
2497 2522 0.678048 GGTAGCCTTGGCCAGTCTTG 60.678 60.000 5.11 0.00 0.00 3.02
2498 2523 1.685820 GGTAGCCTTGGCCAGTCTT 59.314 57.895 5.11 0.00 0.00 3.01
2499 2524 2.660064 CGGTAGCCTTGGCCAGTCT 61.660 63.158 5.11 7.13 0.00 3.24
2500 2525 2.125106 CGGTAGCCTTGGCCAGTC 60.125 66.667 5.11 0.00 0.00 3.51
2501 2526 4.410400 GCGGTAGCCTTGGCCAGT 62.410 66.667 5.11 0.00 37.42 4.00
2518 2543 4.473520 AATGGAGGCTGACCGGCG 62.474 66.667 0.00 0.00 44.22 6.46
2519 2544 2.615227 ATCAATGGAGGCTGACCGGC 62.615 60.000 0.00 0.00 42.76 6.13
2520 2545 0.816825 CATCAATGGAGGCTGACCGG 60.817 60.000 0.00 0.00 42.76 5.28
2521 2546 1.442526 GCATCAATGGAGGCTGACCG 61.443 60.000 0.00 0.00 46.80 4.79
2522 2547 2.412605 GCATCAATGGAGGCTGACC 58.587 57.895 0.00 0.00 46.80 4.02
2528 2553 2.699073 CGTGAGGCATCAATGGAGG 58.301 57.895 0.92 0.00 37.14 4.30
2544 2569 4.988598 CTTCACTGCGCCACCCGT 62.989 66.667 4.18 0.00 39.71 5.28
2554 2579 4.680237 TCGGTGGCGCCTTCACTG 62.680 66.667 29.70 22.16 41.49 3.66
2555 2580 4.681978 GTCGGTGGCGCCTTCACT 62.682 66.667 29.70 0.00 35.61 3.41
2594 2619 3.792047 CATGCCAGGCGACGTGTG 61.792 66.667 7.03 0.00 0.00 3.82
2629 2654 1.279840 GCCTTTTATAGCCGCAGCG 59.720 57.895 8.18 8.18 46.67 5.18
2630 2655 1.157870 TCGCCTTTTATAGCCGCAGC 61.158 55.000 0.00 0.00 40.32 5.25
2631 2656 0.582005 GTCGCCTTTTATAGCCGCAG 59.418 55.000 0.00 0.00 0.00 5.18
2632 2657 0.812412 GGTCGCCTTTTATAGCCGCA 60.812 55.000 0.00 0.00 0.00 5.69
2633 2658 0.532196 AGGTCGCCTTTTATAGCCGC 60.532 55.000 0.00 0.00 0.00 6.53
2634 2659 1.499049 GAGGTCGCCTTTTATAGCCG 58.501 55.000 0.00 0.00 31.76 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.