Multiple sequence alignment - TraesCS3B01G328700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G328700 chr3B 100.000 3630 0 0 1 3630 530612426 530608797 0.000000e+00 6704
1 TraesCS3B01G328700 chr3B 80.000 245 27 14 3400 3630 607482785 607483021 1.040000e-35 161
2 TraesCS3B01G328700 chr3A 88.978 3130 140 90 35 3040 526866538 526863490 0.000000e+00 3679
3 TraesCS3B01G328700 chr3D 90.149 2142 89 38 1 2095 404443173 404441107 0.000000e+00 2675
4 TraesCS3B01G328700 chr3D 90.091 1312 59 33 2116 3398 404440903 404439634 0.000000e+00 1637
5 TraesCS3B01G328700 chr3D 80.247 243 23 11 3400 3624 485179567 485179802 3.750000e-35 159
6 TraesCS3B01G328700 chr3D 86.486 148 14 3 3483 3630 605976507 605976366 1.350000e-34 158
7 TraesCS3B01G328700 chr1D 88.494 591 32 16 1776 2353 415141409 415140842 0.000000e+00 682
8 TraesCS3B01G328700 chr1D 82.109 313 41 10 1545 1845 426870193 426869884 1.670000e-63 254
9 TraesCS3B01G328700 chr1B 81.150 313 44 10 1545 1845 576688122 576687813 1.680000e-58 237
10 TraesCS3B01G328700 chr1B 85.806 155 13 5 3476 3630 325804399 325804544 4.850000e-34 156
11 TraesCS3B01G328700 chr1A 80.831 313 45 10 1545 1845 521877903 521877594 7.840000e-57 231
12 TraesCS3B01G328700 chr1A 87.586 145 12 4 3486 3630 431071918 431071780 2.900000e-36 163
13 TraesCS3B01G328700 chr7D 87.838 148 11 6 3482 3629 3670569 3670429 2.240000e-37 167
14 TraesCS3B01G328700 chr4B 80.567 247 22 12 3402 3630 648550584 648550346 2.240000e-37 167
15 TraesCS3B01G328700 chr2D 80.408 245 22 13 3403 3630 12302162 12301927 2.900000e-36 163
16 TraesCS3B01G328700 chr4A 86.395 147 14 4 3482 3628 595284542 595284682 4.850000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G328700 chr3B 530608797 530612426 3629 True 6704 6704 100.000 1 3630 1 chr3B.!!$R1 3629
1 TraesCS3B01G328700 chr3A 526863490 526866538 3048 True 3679 3679 88.978 35 3040 1 chr3A.!!$R1 3005
2 TraesCS3B01G328700 chr3D 404439634 404443173 3539 True 2156 2675 90.120 1 3398 2 chr3D.!!$R2 3397
3 TraesCS3B01G328700 chr1D 415140842 415141409 567 True 682 682 88.494 1776 2353 1 chr1D.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 262 0.115745 AGTACTTTGGGACGGAGGGA 59.884 55.000 0.00 0.00 0.00 4.20 F
396 414 0.169672 CAAATGGAGCGAACCAGCAG 59.830 55.000 7.07 0.00 43.49 4.24 F
397 415 0.250901 AAATGGAGCGAACCAGCAGT 60.251 50.000 7.07 0.00 43.49 4.40 F
416 434 0.800683 TTAGCAACGACGATCGGCAG 60.801 55.000 23.01 16.05 45.59 4.85 F
614 658 1.002544 CCAAGCGAGAAAAGAGGAGGT 59.997 52.381 0.00 0.00 0.00 3.85 F
1011 1065 1.181098 GCACAGCCATGGTGGTTCTT 61.181 55.000 14.67 0.00 40.46 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1206 1260 0.543174 AGAAGAACCTGACGGCCTCT 60.543 55.000 0.00 0.00 0.00 3.69 R
1474 1545 1.405463 TGCAAAACACGCCATGTAACA 59.595 42.857 0.00 0.00 42.31 2.41 R
2193 2464 1.474077 GCAGCAGTTATTTGGTCCAGG 59.526 52.381 0.00 0.00 0.00 4.45 R
2283 2560 5.067936 ACACAGCTAGCGATTAGTAAGATGT 59.932 40.000 9.55 0.25 0.00 3.06 R
2590 2895 2.266055 CTGTTGTCCCCGAGCCTC 59.734 66.667 0.00 0.00 0.00 4.70 R
2857 3201 1.136690 ACTATGAACACACACGCACG 58.863 50.000 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 90 3.303928 GCCGCGCCCCTAGACTAT 61.304 66.667 0.00 0.00 0.00 2.12
191 202 4.974645 TTACTCACCCACAGATTGACTT 57.025 40.909 0.00 0.00 0.00 3.01
194 205 4.642429 ACTCACCCACAGATTGACTTTAC 58.358 43.478 0.00 0.00 0.00 2.01
196 207 4.385825 TCACCCACAGATTGACTTTACAC 58.614 43.478 0.00 0.00 0.00 2.90
197 208 3.186409 CACCCACAGATTGACTTTACACG 59.814 47.826 0.00 0.00 0.00 4.49
213 228 3.673746 ACACGCATCGTTTATCCAATG 57.326 42.857 0.00 0.00 38.32 2.82
216 231 2.420827 ACGCATCGTTTATCCAATGGGA 60.421 45.455 0.00 0.00 42.53 4.37
217 232 3.747388 ACGCATCGTTTATCCAATGGGAT 60.747 43.478 6.89 6.89 46.96 3.85
218 233 5.571376 ACGCATCGTTTATCCAATGGGATC 61.571 45.833 4.36 0.00 43.83 3.36
219 234 7.715788 ACGCATCGTTTATCCAATGGGATCT 62.716 44.000 4.36 0.00 43.83 2.75
220 235 8.418247 ACGCATCGTTTATCCAATGGGATCTA 62.418 42.308 4.36 0.00 43.83 1.98
227 242 3.260269 TCCAATGGGATCTACCGATCT 57.740 47.619 0.00 0.00 44.42 2.75
228 243 4.397919 TCCAATGGGATCTACCGATCTA 57.602 45.455 0.00 0.00 44.42 1.98
230 245 4.090090 CCAATGGGATCTACCGATCTAGT 58.910 47.826 0.00 0.00 44.42 2.57
231 246 5.014860 TCCAATGGGATCTACCGATCTAGTA 59.985 44.000 0.00 0.00 44.42 1.82
232 247 5.125739 CCAATGGGATCTACCGATCTAGTAC 59.874 48.000 0.00 0.00 44.42 2.73
233 248 5.782677 ATGGGATCTACCGATCTAGTACT 57.217 43.478 0.00 0.00 44.42 2.73
234 249 5.579753 TGGGATCTACCGATCTAGTACTT 57.420 43.478 0.00 0.00 44.42 2.24
235 250 5.950023 TGGGATCTACCGATCTAGTACTTT 58.050 41.667 0.00 0.00 44.42 2.66
236 251 5.768662 TGGGATCTACCGATCTAGTACTTTG 59.231 44.000 0.00 0.00 44.42 2.77
237 252 5.183522 GGGATCTACCGATCTAGTACTTTGG 59.816 48.000 0.00 0.00 44.42 3.28
238 253 5.183522 GGATCTACCGATCTAGTACTTTGGG 59.816 48.000 0.00 0.17 44.42 4.12
239 254 5.378230 TCTACCGATCTAGTACTTTGGGA 57.622 43.478 0.00 0.00 0.00 4.37
240 255 5.128919 TCTACCGATCTAGTACTTTGGGAC 58.871 45.833 0.00 0.00 0.00 4.46
241 256 2.686915 ACCGATCTAGTACTTTGGGACG 59.313 50.000 0.00 0.56 0.00 4.79
242 257 2.034305 CCGATCTAGTACTTTGGGACGG 59.966 54.545 0.00 6.14 0.00 4.79
243 258 2.947652 CGATCTAGTACTTTGGGACGGA 59.052 50.000 0.00 0.00 0.00 4.69
244 259 3.003482 CGATCTAGTACTTTGGGACGGAG 59.997 52.174 0.00 0.00 0.00 4.63
245 260 2.731572 TCTAGTACTTTGGGACGGAGG 58.268 52.381 0.00 0.00 0.00 4.30
246 261 1.755380 CTAGTACTTTGGGACGGAGGG 59.245 57.143 0.00 0.00 0.00 4.30
247 262 0.115745 AGTACTTTGGGACGGAGGGA 59.884 55.000 0.00 0.00 0.00 4.20
248 263 0.978907 GTACTTTGGGACGGAGGGAA 59.021 55.000 0.00 0.00 0.00 3.97
249 264 1.558294 GTACTTTGGGACGGAGGGAAT 59.442 52.381 0.00 0.00 0.00 3.01
250 265 1.961133 ACTTTGGGACGGAGGGAATA 58.039 50.000 0.00 0.00 0.00 1.75
251 266 1.558294 ACTTTGGGACGGAGGGAATAC 59.442 52.381 0.00 0.00 0.00 1.89
252 267 1.557832 CTTTGGGACGGAGGGAATACA 59.442 52.381 0.00 0.00 0.00 2.29
253 268 1.659022 TTGGGACGGAGGGAATACAA 58.341 50.000 0.00 0.00 0.00 2.41
254 269 1.200519 TGGGACGGAGGGAATACAAG 58.799 55.000 0.00 0.00 0.00 3.16
255 270 1.273381 TGGGACGGAGGGAATACAAGA 60.273 52.381 0.00 0.00 0.00 3.02
270 285 5.950965 ATACAAGAGAATAAACGACGCAG 57.049 39.130 0.00 0.00 0.00 5.18
289 304 0.466922 GGCATGATGCTGGCCTAACT 60.467 55.000 17.84 0.00 44.28 2.24
333 351 0.364851 GCATGATCTAATCGAGCGCG 59.635 55.000 2.41 2.41 39.35 6.86
334 352 1.691127 CATGATCTAATCGAGCGCGT 58.309 50.000 10.30 0.00 38.98 6.01
369 387 0.317269 CCATCGCCGATCAAACATGC 60.317 55.000 0.00 0.00 0.00 4.06
389 407 2.367030 CATTTGCCAAATGGAGCGAA 57.633 45.000 20.08 0.39 43.50 4.70
390 408 1.994779 CATTTGCCAAATGGAGCGAAC 59.005 47.619 20.08 0.00 43.50 3.95
391 409 0.316841 TTTGCCAAATGGAGCGAACC 59.683 50.000 2.98 0.00 37.39 3.62
392 410 0.825425 TTGCCAAATGGAGCGAACCA 60.825 50.000 2.98 3.65 44.41 3.67
393 411 1.243342 TGCCAAATGGAGCGAACCAG 61.243 55.000 2.98 0.00 43.49 4.00
394 412 1.508088 CCAAATGGAGCGAACCAGC 59.492 57.895 7.07 0.00 43.49 4.85
395 413 1.243342 CCAAATGGAGCGAACCAGCA 61.243 55.000 7.07 0.00 43.49 4.41
396 414 0.169672 CAAATGGAGCGAACCAGCAG 59.830 55.000 7.07 0.00 43.49 4.24
397 415 0.250901 AAATGGAGCGAACCAGCAGT 60.251 50.000 7.07 0.00 43.49 4.40
413 431 0.914551 CAGTTAGCAACGACGATCGG 59.085 55.000 20.98 4.82 45.59 4.18
416 434 0.800683 TTAGCAACGACGATCGGCAG 60.801 55.000 23.01 16.05 45.59 4.85
430 451 2.042831 GGCAGCGAGTGATTTGGCT 61.043 57.895 0.00 0.00 35.84 4.75
445 466 1.905354 GGCTCAACCTTTGCCAGCT 60.905 57.895 0.00 0.00 45.46 4.24
480 514 6.579292 CGAGATTTTACCGTGAGATGAGATAC 59.421 42.308 0.00 0.00 0.00 2.24
538 582 3.090532 GGGCCGGTGGATCTCCTT 61.091 66.667 1.90 0.00 36.82 3.36
594 638 1.526575 CCATTGCCACCACAGACCAC 61.527 60.000 0.00 0.00 0.00 4.16
614 658 1.002544 CCAAGCGAGAAAAGAGGAGGT 59.997 52.381 0.00 0.00 0.00 3.85
615 659 2.072298 CAAGCGAGAAAAGAGGAGGTG 58.928 52.381 0.00 0.00 0.00 4.00
653 697 2.825836 CCCCAACCATCTGCGAGC 60.826 66.667 0.00 0.00 0.00 5.03
692 736 2.282887 GCCAACCAACCCCATCGT 60.283 61.111 0.00 0.00 0.00 3.73
790 834 4.286320 CCGCTCCTTCCCGATCGG 62.286 72.222 27.65 27.65 35.44 4.18
791 835 4.951963 CGCTCCTTCCCGATCGGC 62.952 72.222 29.12 14.06 0.00 5.54
792 836 3.849951 GCTCCTTCCCGATCGGCA 61.850 66.667 29.12 12.35 0.00 5.69
793 837 2.419198 CTCCTTCCCGATCGGCAG 59.581 66.667 29.12 23.70 0.00 4.85
794 838 3.154473 TCCTTCCCGATCGGCAGG 61.154 66.667 31.36 31.36 36.22 4.85
795 839 3.470888 CCTTCCCGATCGGCAGGT 61.471 66.667 29.87 0.00 32.49 4.00
796 840 2.202932 CTTCCCGATCGGCAGGTG 60.203 66.667 29.12 14.67 0.00 4.00
797 841 4.467084 TTCCCGATCGGCAGGTGC 62.467 66.667 29.12 0.00 41.14 5.01
811 855 3.844090 GTGCCCTCGCCTCTCCTC 61.844 72.222 0.00 0.00 0.00 3.71
812 856 4.067512 TGCCCTCGCCTCTCCTCT 62.068 66.667 0.00 0.00 0.00 3.69
844 888 1.337823 CCCTATATATATGCCCCGCGC 60.338 57.143 0.00 0.00 38.31 6.86
1011 1065 1.181098 GCACAGCCATGGTGGTTCTT 61.181 55.000 14.67 0.00 40.46 2.52
1053 1107 2.444895 ATCCCGCTCCTCAGGTCC 60.445 66.667 0.00 0.00 0.00 4.46
1206 1260 1.657751 CGATGGACAGGCTCGAGTCA 61.658 60.000 20.97 0.00 36.50 3.41
1329 1383 2.787567 GGGCTGGCTCGAGTACCTC 61.788 68.421 15.13 4.18 0.00 3.85
1433 1504 1.212751 GAACGGAATGCAAGCCACC 59.787 57.895 8.68 0.00 0.00 4.61
1459 1530 1.885850 GACGCGTGTCTGGTTGGTT 60.886 57.895 20.70 0.00 42.08 3.67
1469 1540 2.040939 TCTGGTTGGTTTCACCGAGTA 58.959 47.619 0.00 0.00 42.58 2.59
1474 1545 4.040706 TGGTTGGTTTCACCGAGTACTTAT 59.959 41.667 0.00 0.00 42.58 1.73
1481 1552 6.815142 GGTTTCACCGAGTACTTATGTTACAT 59.185 38.462 2.58 2.58 0.00 2.29
1483 1554 5.898174 TCACCGAGTACTTATGTTACATGG 58.102 41.667 8.26 3.60 0.00 3.66
1484 1555 4.506654 CACCGAGTACTTATGTTACATGGC 59.493 45.833 8.26 0.00 0.00 4.40
1485 1556 3.734231 CCGAGTACTTATGTTACATGGCG 59.266 47.826 8.26 0.00 0.00 5.69
1486 1557 4.357142 CGAGTACTTATGTTACATGGCGT 58.643 43.478 8.26 4.91 0.00 5.68
1488 1559 5.080969 AGTACTTATGTTACATGGCGTGT 57.919 39.130 17.65 17.65 44.95 4.49
1962 2045 1.459592 ACGATTTGCACTGTACGCTTC 59.540 47.619 0.00 0.00 0.00 3.86
2006 2089 7.558161 TGATTAAATTGGAGATAGTGCACTG 57.442 36.000 29.57 0.00 0.00 3.66
2141 2412 5.467063 ACGAAAGAAGAAAGAGATGGTTGTC 59.533 40.000 0.00 0.00 0.00 3.18
2149 2420 2.277501 GATGGTTGTCATGCGCGC 60.278 61.111 27.26 27.26 35.97 6.86
2150 2421 2.747460 ATGGTTGTCATGCGCGCT 60.747 55.556 33.29 15.19 34.22 5.92
2190 2461 2.069165 AACAGGAACAGGTGGCTCCC 62.069 60.000 1.14 0.00 36.75 4.30
2191 2462 2.208349 AGGAACAGGTGGCTCCCT 59.792 61.111 1.14 0.00 36.75 4.20
2192 2463 1.920835 AGGAACAGGTGGCTCCCTC 60.921 63.158 1.14 0.00 36.75 4.30
2193 2464 2.671682 GAACAGGTGGCTCCCTCC 59.328 66.667 1.14 0.00 37.43 4.30
2283 2560 1.297456 TTCGCGTGATTGCTGCATGA 61.297 50.000 5.77 0.00 0.00 3.07
2326 2608 1.725164 GTGTTCTTGCTGCCTACGTAC 59.275 52.381 0.00 0.00 0.00 3.67
2361 2651 7.789202 ATATGCCTTGATCTCATGTACTACT 57.211 36.000 0.00 0.00 0.00 2.57
2590 2895 0.247736 AGAAGGCTGCCTACAACTCG 59.752 55.000 23.69 0.00 31.13 4.18
2680 2985 1.251251 CAGCTTTTACCAAGCCAGCT 58.749 50.000 2.93 0.00 44.01 4.24
2738 3058 2.034685 TCCCACACGATCGATGAAGATC 59.965 50.000 24.34 0.00 42.58 2.75
2746 3066 3.613671 CGATCGATGAAGATCAAGAGGGG 60.614 52.174 10.26 0.00 45.39 4.79
2839 3163 3.843304 GCTGCGGAGGTAGCTAGA 58.157 61.111 5.93 0.00 46.88 2.43
2840 3164 2.346597 GCTGCGGAGGTAGCTAGAT 58.653 57.895 5.93 0.00 46.88 1.98
2841 3165 0.242555 GCTGCGGAGGTAGCTAGATC 59.757 60.000 5.93 0.00 46.88 2.75
2842 3166 0.885196 CTGCGGAGGTAGCTAGATCC 59.115 60.000 12.39 12.39 35.28 3.36
2844 3168 1.133450 TGCGGAGGTAGCTAGATCCTT 60.133 52.381 17.86 0.00 35.28 3.36
2845 3169 1.964933 GCGGAGGTAGCTAGATCCTTT 59.035 52.381 17.86 0.00 0.00 3.11
2965 3319 9.250624 GATGAATAGTTAGTGTGAACCAGATAC 57.749 37.037 0.00 0.00 0.00 2.24
2969 3348 4.283467 AGTTAGTGTGAACCAGATACAGCA 59.717 41.667 0.00 0.00 0.00 4.41
2970 3349 3.325293 AGTGTGAACCAGATACAGCAG 57.675 47.619 0.00 0.00 0.00 4.24
2971 3350 2.899900 AGTGTGAACCAGATACAGCAGA 59.100 45.455 0.00 0.00 0.00 4.26
2972 3351 3.056250 AGTGTGAACCAGATACAGCAGAG 60.056 47.826 0.00 0.00 0.00 3.35
2973 3352 2.234661 TGTGAACCAGATACAGCAGAGG 59.765 50.000 0.00 0.00 0.00 3.69
2974 3353 2.497675 GTGAACCAGATACAGCAGAGGA 59.502 50.000 0.00 0.00 0.00 3.71
2975 3354 3.133721 GTGAACCAGATACAGCAGAGGAT 59.866 47.826 0.00 0.00 0.00 3.24
2976 3355 3.776969 TGAACCAGATACAGCAGAGGATT 59.223 43.478 0.00 0.00 0.00 3.01
2977 3356 3.834489 ACCAGATACAGCAGAGGATTG 57.166 47.619 0.00 0.00 0.00 2.67
2978 3357 2.437281 ACCAGATACAGCAGAGGATTGG 59.563 50.000 0.00 0.00 0.00 3.16
2979 3358 2.492012 CAGATACAGCAGAGGATTGGC 58.508 52.381 0.00 0.00 0.00 4.52
2980 3359 2.121948 AGATACAGCAGAGGATTGGCA 58.878 47.619 0.00 0.00 0.00 4.92
2981 3360 2.709934 AGATACAGCAGAGGATTGGCAT 59.290 45.455 0.00 0.00 0.00 4.40
2982 3361 2.627515 TACAGCAGAGGATTGGCATC 57.372 50.000 0.00 0.00 0.00 3.91
2983 3362 0.622136 ACAGCAGAGGATTGGCATCA 59.378 50.000 0.00 0.00 0.00 3.07
2984 3363 1.005097 ACAGCAGAGGATTGGCATCAA 59.995 47.619 0.00 0.00 37.28 2.57
2985 3364 2.097036 CAGCAGAGGATTGGCATCAAA 58.903 47.619 0.00 0.00 36.36 2.69
2986 3365 2.099263 CAGCAGAGGATTGGCATCAAAG 59.901 50.000 0.00 0.00 36.36 2.77
2987 3366 2.097825 GCAGAGGATTGGCATCAAAGT 58.902 47.619 0.00 0.00 36.36 2.66
2988 3367 2.159282 GCAGAGGATTGGCATCAAAGTG 60.159 50.000 0.00 0.00 36.36 3.16
2989 3368 2.426024 CAGAGGATTGGCATCAAAGTGG 59.574 50.000 0.00 0.00 36.36 4.00
2990 3369 2.042162 AGAGGATTGGCATCAAAGTGGT 59.958 45.455 0.00 0.00 36.36 4.16
2991 3370 2.424956 GAGGATTGGCATCAAAGTGGTC 59.575 50.000 0.00 0.00 36.36 4.02
2999 3378 4.019411 TGGCATCAAAGTGGTCTTCTGATA 60.019 41.667 0.00 0.00 32.90 2.15
3008 3387 8.954350 CAAAGTGGTCTTCTGATATTTTCTCAT 58.046 33.333 0.00 0.00 32.90 2.90
3032 3411 2.111384 CATGAGTGGTAGTACCTGGCT 58.889 52.381 20.07 14.48 39.58 4.75
3040 3419 2.159268 GGTAGTACCTGGCTTCGACTTC 60.159 54.545 12.41 0.00 34.73 3.01
3055 3434 3.428870 TCGACTTCGATCTTGTTTTCTGC 59.571 43.478 0.00 0.00 44.22 4.26
3073 3452 5.142061 TCTGCACTTCCGATAACTGTAAA 57.858 39.130 0.00 0.00 0.00 2.01
3083 3462 6.334989 TCCGATAACTGTAAATGTGGTGTAG 58.665 40.000 0.00 0.00 0.00 2.74
3115 3494 1.112950 TGTGTACACGTGGACCTTCA 58.887 50.000 27.68 19.81 0.00 3.02
3139 3520 2.307496 AACCTGCCAATGATCCAACA 57.693 45.000 0.00 0.00 0.00 3.33
3147 3528 3.960102 GCCAATGATCCAACATTTCCCTA 59.040 43.478 0.00 0.00 38.25 3.53
3159 3540 6.434028 CCAACATTTCCCTATCACTCTTTCAA 59.566 38.462 0.00 0.00 0.00 2.69
3400 3781 4.591399 TGTGGCCTGCTGCTGCTT 62.591 61.111 17.00 0.00 40.92 3.91
3401 3782 3.300765 GTGGCCTGCTGCTGCTTT 61.301 61.111 17.00 0.00 40.92 3.51
3402 3783 2.522436 TGGCCTGCTGCTGCTTTT 60.522 55.556 17.00 0.00 40.92 2.27
3403 3784 2.135581 TGGCCTGCTGCTGCTTTTT 61.136 52.632 17.00 0.00 40.92 1.94
3427 3808 6.561737 TTTTCTCAACACAGTACAAACACA 57.438 33.333 0.00 0.00 0.00 3.72
3428 3809 6.561737 TTTCTCAACACAGTACAAACACAA 57.438 33.333 0.00 0.00 0.00 3.33
3429 3810 5.794687 TCTCAACACAGTACAAACACAAG 57.205 39.130 0.00 0.00 0.00 3.16
3430 3811 5.242434 TCTCAACACAGTACAAACACAAGT 58.758 37.500 0.00 0.00 0.00 3.16
3431 3812 5.121611 TCTCAACACAGTACAAACACAAGTG 59.878 40.000 0.00 0.00 34.68 3.16
3450 3831 4.412694 GTGTTCGTATACACACGCATAC 57.587 45.455 9.87 0.00 46.00 2.39
3451 3832 3.853103 GTGTTCGTATACACACGCATACA 59.147 43.478 9.87 0.00 46.00 2.29
3452 3833 3.853103 TGTTCGTATACACACGCATACAC 59.147 43.478 3.32 0.00 41.67 2.90
3453 3834 4.100529 GTTCGTATACACACGCATACACT 58.899 43.478 3.32 0.00 41.67 3.55
3454 3835 3.943958 TCGTATACACACGCATACACTC 58.056 45.455 3.32 0.00 41.67 3.51
3455 3836 3.374678 TCGTATACACACGCATACACTCA 59.625 43.478 3.32 0.00 41.67 3.41
3456 3837 4.035909 TCGTATACACACGCATACACTCAT 59.964 41.667 3.32 0.00 41.67 2.90
3457 3838 4.738252 CGTATACACACGCATACACTCATT 59.262 41.667 3.32 0.00 34.78 2.57
3458 3839 5.108368 CGTATACACACGCATACACTCATTC 60.108 44.000 3.32 0.00 34.78 2.67
3459 3840 2.346803 ACACACGCATACACTCATTCC 58.653 47.619 0.00 0.00 0.00 3.01
3460 3841 1.665679 CACACGCATACACTCATTCCC 59.334 52.381 0.00 0.00 0.00 3.97
3461 3842 1.555075 ACACGCATACACTCATTCCCT 59.445 47.619 0.00 0.00 0.00 4.20
3462 3843 2.027192 ACACGCATACACTCATTCCCTT 60.027 45.455 0.00 0.00 0.00 3.95
3463 3844 2.352651 CACGCATACACTCATTCCCTTG 59.647 50.000 0.00 0.00 0.00 3.61
3464 3845 2.236146 ACGCATACACTCATTCCCTTGA 59.764 45.455 0.00 0.00 0.00 3.02
3465 3846 3.270027 CGCATACACTCATTCCCTTGAA 58.730 45.455 0.00 0.00 34.33 2.69
3466 3847 3.063997 CGCATACACTCATTCCCTTGAAC 59.936 47.826 0.00 0.00 32.13 3.18
3467 3848 3.063997 GCATACACTCATTCCCTTGAACG 59.936 47.826 0.00 0.00 32.13 3.95
3468 3849 1.523758 ACACTCATTCCCTTGAACGC 58.476 50.000 0.00 0.00 32.13 4.84
3469 3850 1.202758 ACACTCATTCCCTTGAACGCA 60.203 47.619 0.00 0.00 32.13 5.24
3470 3851 1.197721 CACTCATTCCCTTGAACGCAC 59.802 52.381 0.00 0.00 32.13 5.34
3471 3852 1.202758 ACTCATTCCCTTGAACGCACA 60.203 47.619 0.00 0.00 32.13 4.57
3472 3853 1.197721 CTCATTCCCTTGAACGCACAC 59.802 52.381 0.00 0.00 32.13 3.82
3473 3854 0.950836 CATTCCCTTGAACGCACACA 59.049 50.000 0.00 0.00 32.13 3.72
3474 3855 1.541147 CATTCCCTTGAACGCACACAT 59.459 47.619 0.00 0.00 32.13 3.21
3475 3856 0.950836 TTCCCTTGAACGCACACATG 59.049 50.000 0.00 0.00 0.00 3.21
3476 3857 4.282313 ATTCCCTTGAACGCACACATGC 62.282 50.000 0.00 0.00 39.34 4.06
3486 3867 1.492873 CACACATGCACCGTCTTCG 59.507 57.895 0.00 0.00 0.00 3.79
3487 3868 0.943835 CACACATGCACCGTCTTCGA 60.944 55.000 0.00 0.00 39.71 3.71
3488 3869 0.249699 ACACATGCACCGTCTTCGAA 60.250 50.000 0.00 0.00 39.71 3.71
3489 3870 0.865111 CACATGCACCGTCTTCGAAA 59.135 50.000 0.00 0.00 39.71 3.46
3490 3871 1.136252 CACATGCACCGTCTTCGAAAG 60.136 52.381 0.00 0.00 39.71 2.62
3491 3872 1.270094 ACATGCACCGTCTTCGAAAGA 60.270 47.619 0.00 0.00 39.71 2.52
3501 3882 3.290308 TCTTCGAAAGACTGAGCTGAC 57.710 47.619 0.00 0.00 41.84 3.51
3502 3883 2.623416 TCTTCGAAAGACTGAGCTGACA 59.377 45.455 0.00 0.00 41.84 3.58
3503 3884 3.256879 TCTTCGAAAGACTGAGCTGACAT 59.743 43.478 0.00 0.00 41.84 3.06
3504 3885 4.459337 TCTTCGAAAGACTGAGCTGACATA 59.541 41.667 0.00 0.00 41.84 2.29
3505 3886 4.991153 TCGAAAGACTGAGCTGACATAT 57.009 40.909 0.00 0.00 33.31 1.78
3506 3887 4.926244 TCGAAAGACTGAGCTGACATATC 58.074 43.478 0.00 0.00 33.31 1.63
3507 3888 4.399303 TCGAAAGACTGAGCTGACATATCA 59.601 41.667 0.00 0.00 33.31 2.15
3508 3889 5.068329 TCGAAAGACTGAGCTGACATATCAT 59.932 40.000 0.00 0.00 31.30 2.45
3509 3890 5.752472 CGAAAGACTGAGCTGACATATCATT 59.248 40.000 0.00 0.00 33.22 2.57
3510 3891 6.257411 CGAAAGACTGAGCTGACATATCATTT 59.743 38.462 0.00 0.00 33.22 2.32
3511 3892 7.201591 CGAAAGACTGAGCTGACATATCATTTT 60.202 37.037 0.00 0.00 33.22 1.82
3512 3893 6.922247 AGACTGAGCTGACATATCATTTTG 57.078 37.500 0.00 0.00 33.22 2.44
3513 3894 6.647229 AGACTGAGCTGACATATCATTTTGA 58.353 36.000 0.00 0.00 33.22 2.69
3514 3895 7.108194 AGACTGAGCTGACATATCATTTTGAA 58.892 34.615 0.00 0.00 33.22 2.69
3515 3896 7.609146 AGACTGAGCTGACATATCATTTTGAAA 59.391 33.333 0.00 0.00 33.22 2.69
3516 3897 8.289939 ACTGAGCTGACATATCATTTTGAAAT 57.710 30.769 0.00 0.00 33.22 2.17
3517 3898 8.746530 ACTGAGCTGACATATCATTTTGAAATT 58.253 29.630 0.00 0.00 33.22 1.82
3518 3899 9.582431 CTGAGCTGACATATCATTTTGAAATTT 57.418 29.630 0.00 0.00 33.22 1.82
3521 3902 9.507280 AGCTGACATATCATTTTGAAATTTACG 57.493 29.630 0.00 0.00 33.22 3.18
3522 3903 9.502145 GCTGACATATCATTTTGAAATTTACGA 57.498 29.630 0.00 0.00 33.22 3.43
3531 3912 9.743057 TCATTTTGAAATTTACGAAGTCATTGT 57.257 25.926 0.00 0.00 43.93 2.71
3534 3915 9.672086 TTTTGAAATTTACGAAGTCATTGTAGG 57.328 29.630 0.00 0.00 43.93 3.18
3535 3916 6.837992 TGAAATTTACGAAGTCATTGTAGGC 58.162 36.000 0.00 0.00 43.93 3.93
3536 3917 6.428465 TGAAATTTACGAAGTCATTGTAGGCA 59.572 34.615 0.00 0.00 43.93 4.75
3537 3918 7.120579 TGAAATTTACGAAGTCATTGTAGGCAT 59.879 33.333 0.00 0.00 43.93 4.40
3538 3919 6.604735 ATTTACGAAGTCATTGTAGGCATC 57.395 37.500 0.00 0.00 43.93 3.91
3539 3920 3.895232 ACGAAGTCATTGTAGGCATCT 57.105 42.857 0.00 0.00 29.74 2.90
3540 3921 3.786635 ACGAAGTCATTGTAGGCATCTC 58.213 45.455 0.00 0.00 29.74 2.75
3541 3922 2.791560 CGAAGTCATTGTAGGCATCTCG 59.208 50.000 0.00 0.00 0.00 4.04
3542 3923 3.735208 CGAAGTCATTGTAGGCATCTCGT 60.735 47.826 0.00 0.00 0.00 4.18
3543 3924 3.444703 AGTCATTGTAGGCATCTCGTC 57.555 47.619 0.00 0.00 0.00 4.20
3544 3925 2.760650 AGTCATTGTAGGCATCTCGTCA 59.239 45.455 0.00 0.00 0.00 4.35
3545 3926 3.386078 AGTCATTGTAGGCATCTCGTCAT 59.614 43.478 0.00 0.00 0.00 3.06
3546 3927 3.738282 GTCATTGTAGGCATCTCGTCATC 59.262 47.826 0.00 0.00 0.00 2.92
3547 3928 2.492019 TTGTAGGCATCTCGTCATCG 57.508 50.000 0.00 0.00 38.55 3.84
3548 3929 1.389555 TGTAGGCATCTCGTCATCGT 58.610 50.000 0.00 0.00 38.33 3.73
3549 3930 1.333931 TGTAGGCATCTCGTCATCGTC 59.666 52.381 0.00 0.00 38.33 4.20
3550 3931 1.333931 GTAGGCATCTCGTCATCGTCA 59.666 52.381 0.00 0.00 38.33 4.35
3551 3932 1.035923 AGGCATCTCGTCATCGTCAT 58.964 50.000 0.00 0.00 38.33 3.06
3552 3933 1.000827 AGGCATCTCGTCATCGTCATC 60.001 52.381 0.00 0.00 38.33 2.92
3553 3934 1.048494 GCATCTCGTCATCGTCATCG 58.952 55.000 0.00 0.00 38.33 3.84
3564 3945 2.410785 TCGTCATCGACAGAAACGTT 57.589 45.000 0.00 0.00 41.35 3.99
3565 3946 2.734670 TCGTCATCGACAGAAACGTTT 58.265 42.857 14.57 14.57 41.35 3.60
3566 3947 3.117794 TCGTCATCGACAGAAACGTTTT 58.882 40.909 15.89 0.00 41.35 2.43
3567 3948 3.180980 TCGTCATCGACAGAAACGTTTTC 59.819 43.478 15.89 8.02 41.35 2.29
3568 3949 3.181774 CGTCATCGACAGAAACGTTTTCT 59.818 43.478 15.89 10.65 39.71 2.52
3569 3950 4.660907 CGTCATCGACAGAAACGTTTTCTC 60.661 45.833 15.89 8.90 39.71 2.87
3570 3951 3.739300 TCATCGACAGAAACGTTTTCTCC 59.261 43.478 15.89 1.93 0.00 3.71
3571 3952 2.476821 TCGACAGAAACGTTTTCTCCC 58.523 47.619 15.89 1.53 0.00 4.30
3572 3953 2.159071 TCGACAGAAACGTTTTCTCCCA 60.159 45.455 15.89 0.00 0.00 4.37
3573 3954 2.033151 CGACAGAAACGTTTTCTCCCAC 60.033 50.000 15.89 0.00 0.00 4.61
3574 3955 3.203716 GACAGAAACGTTTTCTCCCACT 58.796 45.455 15.89 2.56 0.00 4.00
3575 3956 2.943033 ACAGAAACGTTTTCTCCCACTG 59.057 45.455 15.89 16.74 0.00 3.66
3576 3957 3.202906 CAGAAACGTTTTCTCCCACTGA 58.797 45.455 15.89 0.00 0.00 3.41
3577 3958 3.625764 CAGAAACGTTTTCTCCCACTGAA 59.374 43.478 15.89 0.00 0.00 3.02
3578 3959 4.275936 CAGAAACGTTTTCTCCCACTGAAT 59.724 41.667 15.89 0.00 0.00 2.57
3579 3960 4.275936 AGAAACGTTTTCTCCCACTGAATG 59.724 41.667 15.89 0.00 0.00 2.67
3580 3961 1.880027 ACGTTTTCTCCCACTGAATGC 59.120 47.619 0.00 0.00 0.00 3.56
3581 3962 1.879380 CGTTTTCTCCCACTGAATGCA 59.121 47.619 0.00 0.00 0.00 3.96
3582 3963 2.350772 CGTTTTCTCCCACTGAATGCAC 60.351 50.000 0.00 0.00 0.00 4.57
3583 3964 2.622942 GTTTTCTCCCACTGAATGCACA 59.377 45.455 0.00 0.00 0.00 4.57
3584 3965 1.896220 TTCTCCCACTGAATGCACAC 58.104 50.000 0.00 0.00 0.00 3.82
3585 3966 0.036732 TCTCCCACTGAATGCACACC 59.963 55.000 0.00 0.00 0.00 4.16
3586 3967 1.300971 CTCCCACTGAATGCACACCG 61.301 60.000 0.00 0.00 0.00 4.94
3587 3968 1.600636 CCCACTGAATGCACACCGT 60.601 57.895 0.00 0.00 0.00 4.83
3588 3969 1.577328 CCCACTGAATGCACACCGTC 61.577 60.000 0.00 0.00 0.00 4.79
3589 3970 1.492873 CACTGAATGCACACCGTCG 59.507 57.895 0.00 0.00 0.00 5.12
3590 3971 1.667830 ACTGAATGCACACCGTCGG 60.668 57.895 10.48 10.48 0.00 4.79
3591 3972 1.374125 CTGAATGCACACCGTCGGA 60.374 57.895 20.51 0.00 0.00 4.55
3592 3973 0.948623 CTGAATGCACACCGTCGGAA 60.949 55.000 20.51 0.00 0.00 4.30
3593 3974 0.533085 TGAATGCACACCGTCGGAAA 60.533 50.000 20.51 0.00 0.00 3.13
3594 3975 0.802494 GAATGCACACCGTCGGAAAT 59.198 50.000 20.51 0.00 0.00 2.17
3595 3976 0.802494 AATGCACACCGTCGGAAATC 59.198 50.000 20.51 4.90 0.00 2.17
3596 3977 1.024579 ATGCACACCGTCGGAAATCC 61.025 55.000 20.51 2.61 0.00 3.01
3597 3978 1.375523 GCACACCGTCGGAAATCCT 60.376 57.895 20.51 0.00 0.00 3.24
3598 3979 1.635663 GCACACCGTCGGAAATCCTG 61.636 60.000 20.51 7.05 0.00 3.86
3599 3980 0.037697 CACACCGTCGGAAATCCTGA 60.038 55.000 20.51 0.00 0.00 3.86
3600 3981 0.682852 ACACCGTCGGAAATCCTGAA 59.317 50.000 20.51 0.00 0.00 3.02
3601 3982 1.071071 ACACCGTCGGAAATCCTGAAA 59.929 47.619 20.51 0.00 0.00 2.69
3602 3983 2.290071 ACACCGTCGGAAATCCTGAAAT 60.290 45.455 20.51 0.00 0.00 2.17
3603 3984 3.055675 ACACCGTCGGAAATCCTGAAATA 60.056 43.478 20.51 0.00 0.00 1.40
3604 3985 3.936453 CACCGTCGGAAATCCTGAAATAA 59.064 43.478 20.51 0.00 0.00 1.40
3605 3986 4.393680 CACCGTCGGAAATCCTGAAATAAA 59.606 41.667 20.51 0.00 0.00 1.40
3606 3987 5.065988 CACCGTCGGAAATCCTGAAATAAAT 59.934 40.000 20.51 0.00 0.00 1.40
3607 3988 5.296035 ACCGTCGGAAATCCTGAAATAAATC 59.704 40.000 20.51 0.00 0.00 2.17
3608 3989 5.277828 CCGTCGGAAATCCTGAAATAAATCC 60.278 44.000 4.91 0.00 0.00 3.01
3609 3990 5.295787 CGTCGGAAATCCTGAAATAAATCCA 59.704 40.000 0.00 0.00 0.00 3.41
3610 3991 6.511767 CGTCGGAAATCCTGAAATAAATCCAG 60.512 42.308 0.00 0.00 0.00 3.86
3611 3992 6.542370 GTCGGAAATCCTGAAATAAATCCAGA 59.458 38.462 0.00 0.00 0.00 3.86
3612 3993 7.067008 GTCGGAAATCCTGAAATAAATCCAGAA 59.933 37.037 0.00 0.00 0.00 3.02
3613 3994 7.613801 TCGGAAATCCTGAAATAAATCCAGAAA 59.386 33.333 0.00 0.00 0.00 2.52
3614 3995 8.416329 CGGAAATCCTGAAATAAATCCAGAAAT 58.584 33.333 0.00 0.00 0.00 2.17
3621 4002 8.971321 CCTGAAATAAATCCAGAAATAAATGCG 58.029 33.333 0.00 0.00 0.00 4.73
3622 4003 9.734620 CTGAAATAAATCCAGAAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
3623 4004 9.734620 TGAAATAAATCCAGAAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
3624 4005 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
3625 4006 5.581126 AAATCCAGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
3626 4007 5.779529 AATCCAGAAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
3627 4008 4.818534 TCCAGAAATAAATGCGAGCATC 57.181 40.909 11.26 0.00 35.31 3.91
3628 4009 4.198530 TCCAGAAATAAATGCGAGCATCA 58.801 39.130 11.26 3.11 35.31 3.07
3629 4010 4.274214 TCCAGAAATAAATGCGAGCATCAG 59.726 41.667 11.26 0.00 35.31 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.365582 GTACAATGCCTTCCGGTCAAT 58.634 47.619 0.00 0.00 0.00 2.57
39 40 1.896122 AACTAGGAAACCCGCCGAGG 61.896 60.000 0.00 0.00 40.63 4.63
82 90 2.032634 GCTGAATTCGCGGTCACCA 61.033 57.895 6.13 0.00 0.00 4.17
176 187 3.399330 CGTGTAAAGTCAATCTGTGGGT 58.601 45.455 0.00 0.00 0.00 4.51
191 202 4.034626 CCATTGGATAAACGATGCGTGTAA 59.965 41.667 0.00 0.00 39.99 2.41
194 205 2.286950 CCCATTGGATAAACGATGCGTG 60.287 50.000 3.62 0.00 39.99 5.34
196 207 2.217750 TCCCATTGGATAAACGATGCG 58.782 47.619 3.62 0.00 35.03 4.73
216 231 5.769162 GTCCCAAAGTACTAGATCGGTAGAT 59.231 44.000 0.00 0.00 40.38 1.98
217 232 5.128919 GTCCCAAAGTACTAGATCGGTAGA 58.871 45.833 0.00 0.00 0.00 2.59
218 233 4.024218 CGTCCCAAAGTACTAGATCGGTAG 60.024 50.000 0.00 0.00 0.00 3.18
219 234 3.879295 CGTCCCAAAGTACTAGATCGGTA 59.121 47.826 0.00 0.00 0.00 4.02
220 235 2.686915 CGTCCCAAAGTACTAGATCGGT 59.313 50.000 0.00 0.57 0.00 4.69
221 236 2.034305 CCGTCCCAAAGTACTAGATCGG 59.966 54.545 0.00 2.95 0.00 4.18
223 238 3.318557 CCTCCGTCCCAAAGTACTAGATC 59.681 52.174 0.00 0.00 0.00 2.75
225 240 2.622452 CCCTCCGTCCCAAAGTACTAGA 60.622 54.545 0.00 0.00 0.00 2.43
226 241 1.755380 CCCTCCGTCCCAAAGTACTAG 59.245 57.143 0.00 0.00 0.00 2.57
227 242 1.358787 TCCCTCCGTCCCAAAGTACTA 59.641 52.381 0.00 0.00 0.00 1.82
228 243 0.115745 TCCCTCCGTCCCAAAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
230 245 1.961133 ATTCCCTCCGTCCCAAAGTA 58.039 50.000 0.00 0.00 0.00 2.24
231 246 1.558294 GTATTCCCTCCGTCCCAAAGT 59.442 52.381 0.00 0.00 0.00 2.66
232 247 1.557832 TGTATTCCCTCCGTCCCAAAG 59.442 52.381 0.00 0.00 0.00 2.77
233 248 1.659022 TGTATTCCCTCCGTCCCAAA 58.341 50.000 0.00 0.00 0.00 3.28
234 249 1.557832 CTTGTATTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
235 250 1.200519 CTTGTATTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
236 251 1.413077 CTCTTGTATTCCCTCCGTCCC 59.587 57.143 0.00 0.00 0.00 4.46
237 252 2.385803 TCTCTTGTATTCCCTCCGTCC 58.614 52.381 0.00 0.00 0.00 4.79
238 253 4.674281 ATTCTCTTGTATTCCCTCCGTC 57.326 45.455 0.00 0.00 0.00 4.79
239 254 6.346896 GTTTATTCTCTTGTATTCCCTCCGT 58.653 40.000 0.00 0.00 0.00 4.69
240 255 5.462398 CGTTTATTCTCTTGTATTCCCTCCG 59.538 44.000 0.00 0.00 0.00 4.63
241 256 6.479331 GTCGTTTATTCTCTTGTATTCCCTCC 59.521 42.308 0.00 0.00 0.00 4.30
242 257 6.198591 CGTCGTTTATTCTCTTGTATTCCCTC 59.801 42.308 0.00 0.00 0.00 4.30
243 258 6.040878 CGTCGTTTATTCTCTTGTATTCCCT 58.959 40.000 0.00 0.00 0.00 4.20
244 259 5.276726 GCGTCGTTTATTCTCTTGTATTCCC 60.277 44.000 0.00 0.00 0.00 3.97
245 260 5.290158 TGCGTCGTTTATTCTCTTGTATTCC 59.710 40.000 0.00 0.00 0.00 3.01
246 261 6.327177 TGCGTCGTTTATTCTCTTGTATTC 57.673 37.500 0.00 0.00 0.00 1.75
247 262 5.291128 CCTGCGTCGTTTATTCTCTTGTATT 59.709 40.000 0.00 0.00 0.00 1.89
248 263 4.804139 CCTGCGTCGTTTATTCTCTTGTAT 59.196 41.667 0.00 0.00 0.00 2.29
249 264 4.171005 CCTGCGTCGTTTATTCTCTTGTA 58.829 43.478 0.00 0.00 0.00 2.41
250 265 2.993899 CCTGCGTCGTTTATTCTCTTGT 59.006 45.455 0.00 0.00 0.00 3.16
251 266 2.222819 GCCTGCGTCGTTTATTCTCTTG 60.223 50.000 0.00 0.00 0.00 3.02
252 267 2.000447 GCCTGCGTCGTTTATTCTCTT 59.000 47.619 0.00 0.00 0.00 2.85
253 268 1.067142 TGCCTGCGTCGTTTATTCTCT 60.067 47.619 0.00 0.00 0.00 3.10
254 269 1.355971 TGCCTGCGTCGTTTATTCTC 58.644 50.000 0.00 0.00 0.00 2.87
255 270 1.665679 CATGCCTGCGTCGTTTATTCT 59.334 47.619 0.00 0.00 0.00 2.40
270 285 0.466922 AGTTAGGCCAGCATCATGCC 60.467 55.000 5.84 0.00 46.52 4.40
347 365 0.249120 TGTTTGATCGGCGATGGAGT 59.751 50.000 29.20 2.55 0.00 3.85
387 405 1.194772 GTCGTTGCTAACTGCTGGTTC 59.805 52.381 0.00 0.00 43.37 3.62
388 406 1.226746 GTCGTTGCTAACTGCTGGTT 58.773 50.000 0.00 0.00 43.37 3.67
389 407 0.944311 CGTCGTTGCTAACTGCTGGT 60.944 55.000 0.00 0.00 43.37 4.00
390 408 0.666274 TCGTCGTTGCTAACTGCTGG 60.666 55.000 0.00 0.00 43.37 4.85
391 409 1.321743 GATCGTCGTTGCTAACTGCTG 59.678 52.381 0.00 0.00 43.37 4.41
392 410 1.630148 GATCGTCGTTGCTAACTGCT 58.370 50.000 0.00 0.00 43.37 4.24
393 411 0.294887 CGATCGTCGTTGCTAACTGC 59.705 55.000 7.03 0.00 37.36 4.40
394 412 0.914551 CCGATCGTCGTTGCTAACTG 59.085 55.000 15.09 0.00 38.40 3.16
395 413 0.801067 GCCGATCGTCGTTGCTAACT 60.801 55.000 15.09 0.00 38.40 2.24
396 414 1.074319 TGCCGATCGTCGTTGCTAAC 61.074 55.000 15.09 0.00 38.40 2.34
397 415 0.800683 CTGCCGATCGTCGTTGCTAA 60.801 55.000 15.09 0.00 38.40 3.09
402 420 4.111016 TCGCTGCCGATCGTCGTT 62.111 61.111 15.09 0.00 38.82 3.85
413 431 1.300971 TGAGCCAAATCACTCGCTGC 61.301 55.000 0.00 0.00 35.61 5.25
416 434 0.169009 GGTTGAGCCAAATCACTCGC 59.831 55.000 0.00 0.00 35.61 5.03
430 451 2.927004 CGTAGCTGGCAAAGGTTGA 58.073 52.632 0.00 0.00 37.85 3.18
445 466 0.740149 TAAAATCTCGGGCGAGCGTA 59.260 50.000 0.00 0.00 41.71 4.42
520 564 3.642741 AAGGAGATCCACCGGCCCT 62.643 63.158 0.00 0.00 38.89 5.19
538 582 1.906824 GGGTCTCAGACGTGTCCCA 60.907 63.158 0.00 0.00 33.52 4.37
594 638 1.002544 ACCTCCTCTTTTCTCGCTTGG 59.997 52.381 0.00 0.00 0.00 3.61
653 697 2.203056 TGCTTCATCGCATCCGGG 60.203 61.111 0.00 0.00 34.44 5.73
794 838 3.844090 GAGGAGAGGCGAGGGCAC 61.844 72.222 0.00 0.00 42.47 5.01
795 839 4.067512 AGAGGAGAGGCGAGGGCA 62.068 66.667 0.00 0.00 42.47 5.36
796 840 3.223589 GAGAGGAGAGGCGAGGGC 61.224 72.222 0.00 0.00 38.90 5.19
797 841 2.520741 GGAGAGGAGAGGCGAGGG 60.521 72.222 0.00 0.00 0.00 4.30
798 842 1.528309 GAGGAGAGGAGAGGCGAGG 60.528 68.421 0.00 0.00 0.00 4.63
799 843 0.535102 GAGAGGAGAGGAGAGGCGAG 60.535 65.000 0.00 0.00 0.00 5.03
800 844 1.529796 GAGAGGAGAGGAGAGGCGA 59.470 63.158 0.00 0.00 0.00 5.54
801 845 1.528309 GGAGAGGAGAGGAGAGGCG 60.528 68.421 0.00 0.00 0.00 5.52
802 846 1.152546 GGGAGAGGAGAGGAGAGGC 60.153 68.421 0.00 0.00 0.00 4.70
803 847 0.998945 AGGGGAGAGGAGAGGAGAGG 60.999 65.000 0.00 0.00 0.00 3.69
804 848 0.478507 GAGGGGAGAGGAGAGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
805 849 0.996762 GGAGGGGAGAGGAGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
806 850 1.541672 GGAGGGGAGAGGAGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
807 851 2.015726 GGGAGGGGAGAGGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
808 852 2.612251 GGGAGGGGAGAGGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
809 853 0.703056 TAGGGGAGGGGAGAGGAGAG 60.703 65.000 0.00 0.00 0.00 3.20
810 854 0.026415 ATAGGGGAGGGGAGAGGAGA 60.026 60.000 0.00 0.00 0.00 3.71
811 855 1.774864 TATAGGGGAGGGGAGAGGAG 58.225 60.000 0.00 0.00 0.00 3.69
812 856 2.496447 ATATAGGGGAGGGGAGAGGA 57.504 55.000 0.00 0.00 0.00 3.71
844 888 2.854032 AGTGTGTGTGGGGGAGGG 60.854 66.667 0.00 0.00 0.00 4.30
985 1039 1.222661 CCATGGCTGTGCTGAGCTA 59.777 57.895 5.83 2.24 39.11 3.32
989 1043 2.034532 CCACCATGGCTGTGCTGA 59.965 61.111 13.04 0.00 32.30 4.26
990 1044 1.870055 GAACCACCATGGCTGTGCTG 61.870 60.000 13.04 0.53 42.67 4.41
991 1045 1.604593 GAACCACCATGGCTGTGCT 60.605 57.895 13.04 0.00 42.67 4.40
992 1046 1.181098 AAGAACCACCATGGCTGTGC 61.181 55.000 13.04 7.96 42.67 4.57
993 1047 0.599558 CAAGAACCACCATGGCTGTG 59.400 55.000 13.04 2.23 42.67 3.66
994 1048 1.181098 GCAAGAACCACCATGGCTGT 61.181 55.000 13.04 6.25 42.67 4.40
1089 1143 2.680352 GGGCTGGAGAGGTCGACA 60.680 66.667 18.91 0.00 0.00 4.35
1179 1233 2.573869 CTGTCCATCGTGTCCGCT 59.426 61.111 0.00 0.00 0.00 5.52
1206 1260 0.543174 AGAAGAACCTGACGGCCTCT 60.543 55.000 0.00 0.00 0.00 3.69
1421 1492 1.451207 TATCGCGGTGGCTTGCATT 60.451 52.632 6.13 0.00 36.88 3.56
1459 1530 6.334989 CCATGTAACATAAGTACTCGGTGAA 58.665 40.000 0.00 0.00 0.00 3.18
1469 1540 5.457140 CAAAACACGCCATGTAACATAAGT 58.543 37.500 0.00 0.00 42.31 2.24
1474 1545 1.405463 TGCAAAACACGCCATGTAACA 59.595 42.857 0.00 0.00 42.31 2.41
1481 1552 3.910490 GCCCTGCAAAACACGCCA 61.910 61.111 0.00 0.00 0.00 5.69
1483 1554 4.999939 CCGCCCTGCAAAACACGC 63.000 66.667 0.00 0.00 0.00 5.34
1484 1555 4.999939 GCCGCCCTGCAAAACACG 63.000 66.667 0.00 0.00 0.00 4.49
1485 1556 4.999939 CGCCGCCCTGCAAAACAC 63.000 66.667 0.00 0.00 0.00 3.32
1709 1785 2.279120 GAGATGAGCTGCGGGTCG 60.279 66.667 19.30 0.00 42.30 4.79
1962 2045 3.684305 TCATGCCTCACGTCATTTTAGTG 59.316 43.478 0.00 0.00 37.24 2.74
2006 2089 2.202987 ATGGCTCTGCGTGCTAGC 60.203 61.111 8.10 8.10 35.47 3.42
2098 2356 8.066000 TCTTTCGTTTTCTCGGTTTATTTCTTC 58.934 33.333 0.00 0.00 0.00 2.87
2101 2359 8.066000 TCTTCTTTCGTTTTCTCGGTTTATTTC 58.934 33.333 0.00 0.00 0.00 2.17
2190 2461 2.025887 AGCAGTTATTTGGTCCAGGGAG 60.026 50.000 0.00 0.00 0.00 4.30
2191 2462 1.992557 AGCAGTTATTTGGTCCAGGGA 59.007 47.619 0.00 0.00 0.00 4.20
2192 2463 2.094675 CAGCAGTTATTTGGTCCAGGG 58.905 52.381 0.00 0.00 0.00 4.45
2193 2464 1.474077 GCAGCAGTTATTTGGTCCAGG 59.526 52.381 0.00 0.00 0.00 4.45
2283 2560 5.067936 ACACAGCTAGCGATTAGTAAGATGT 59.932 40.000 9.55 0.25 0.00 3.06
2326 2608 6.971602 AGATCAAGGCATATATACGATACGG 58.028 40.000 0.00 0.00 0.00 4.02
2374 2664 5.221441 GGTCAGCACCTATACATACACATCA 60.221 44.000 0.00 0.00 40.00 3.07
2590 2895 2.266055 CTGTTGTCCCCGAGCCTC 59.734 66.667 0.00 0.00 0.00 4.70
2746 3066 6.541934 TTCTTTTCTAGTAGTAGCTTCCCC 57.458 41.667 0.00 0.00 0.00 4.81
2755 3075 9.121658 CCCTGTTTCTTTTTCTTTTCTAGTAGT 57.878 33.333 0.00 0.00 0.00 2.73
2839 3163 4.942090 CGCACACGCAAAAAGGAT 57.058 50.000 0.00 0.00 38.40 3.24
2857 3201 1.136690 ACTATGAACACACACGCACG 58.863 50.000 0.00 0.00 0.00 5.34
2965 3319 1.758936 TTGATGCCAATCCTCTGCTG 58.241 50.000 0.00 0.00 31.15 4.41
2969 3348 2.042162 ACCACTTTGATGCCAATCCTCT 59.958 45.455 0.00 0.00 31.46 3.69
2970 3349 2.424956 GACCACTTTGATGCCAATCCTC 59.575 50.000 0.00 0.00 31.46 3.71
2971 3350 2.042162 AGACCACTTTGATGCCAATCCT 59.958 45.455 0.00 0.00 31.46 3.24
2972 3351 2.450476 AGACCACTTTGATGCCAATCC 58.550 47.619 0.00 0.00 31.46 3.01
2973 3352 3.760684 AGAAGACCACTTTGATGCCAATC 59.239 43.478 0.00 0.00 36.39 2.67
2974 3353 3.508793 CAGAAGACCACTTTGATGCCAAT 59.491 43.478 0.00 0.00 36.39 3.16
2975 3354 2.886523 CAGAAGACCACTTTGATGCCAA 59.113 45.455 0.00 0.00 36.39 4.52
2976 3355 2.106338 TCAGAAGACCACTTTGATGCCA 59.894 45.455 0.00 0.00 36.39 4.92
2977 3356 2.783135 TCAGAAGACCACTTTGATGCC 58.217 47.619 0.00 0.00 36.39 4.40
2978 3357 6.690194 AATATCAGAAGACCACTTTGATGC 57.310 37.500 0.00 0.00 36.10 3.91
2979 3358 8.954350 AGAAAATATCAGAAGACCACTTTGATG 58.046 33.333 0.00 0.00 36.10 3.07
2980 3359 9.171877 GAGAAAATATCAGAAGACCACTTTGAT 57.828 33.333 0.00 0.00 37.48 2.57
2981 3360 8.156820 TGAGAAAATATCAGAAGACCACTTTGA 58.843 33.333 0.00 0.00 36.39 2.69
2982 3361 8.327941 TGAGAAAATATCAGAAGACCACTTTG 57.672 34.615 0.00 0.00 36.39 2.77
3008 3387 4.344102 GCCAGGTACTACCACTCATGAATA 59.656 45.833 8.01 0.00 41.95 1.75
3040 3419 3.665323 CGGAAGTGCAGAAAACAAGATCG 60.665 47.826 0.00 0.00 0.00 3.69
3055 3434 5.642063 ACCACATTTACAGTTATCGGAAGTG 59.358 40.000 4.77 4.77 0.00 3.16
3073 3452 2.686915 GACTACGCTACCTACACCACAT 59.313 50.000 0.00 0.00 0.00 3.21
3083 3462 1.464608 TGTACACACGACTACGCTACC 59.535 52.381 0.00 0.00 43.96 3.18
3115 3494 4.046286 TGGATCATTGGCAGGTTAAACT 57.954 40.909 0.00 0.00 0.00 2.66
3139 3520 9.183368 GAAAGATTGAAAGAGTGATAGGGAAAT 57.817 33.333 0.00 0.00 0.00 2.17
3147 3528 5.289675 CGCTACGAAAGATTGAAAGAGTGAT 59.710 40.000 0.00 0.00 0.00 3.06
3159 3540 2.165301 GCCGCACGCTACGAAAGAT 61.165 57.895 0.00 0.00 0.00 2.40
3276 3657 3.588742 CGGGCCTACCAGGATTTTT 57.411 52.632 0.84 0.00 37.67 1.94
3403 3784 6.971602 TGTGTTTGTACTGTGTTGAGAAAAA 58.028 32.000 0.00 0.00 0.00 1.94
3404 3785 6.561737 TGTGTTTGTACTGTGTTGAGAAAA 57.438 33.333 0.00 0.00 0.00 2.29
3405 3786 6.205853 ACTTGTGTTTGTACTGTGTTGAGAAA 59.794 34.615 0.00 0.00 0.00 2.52
3406 3787 5.703592 ACTTGTGTTTGTACTGTGTTGAGAA 59.296 36.000 0.00 0.00 0.00 2.87
3407 3788 5.121611 CACTTGTGTTTGTACTGTGTTGAGA 59.878 40.000 0.00 0.00 0.00 3.27
3408 3789 5.106712 ACACTTGTGTTTGTACTGTGTTGAG 60.107 40.000 0.00 0.00 36.42 3.02
3409 3790 4.757657 ACACTTGTGTTTGTACTGTGTTGA 59.242 37.500 0.00 0.00 36.42 3.18
3410 3791 5.041951 ACACTTGTGTTTGTACTGTGTTG 57.958 39.130 0.00 0.00 36.42 3.33
3411 3792 5.615984 CGAACACTTGTGTTTGTACTGTGTT 60.616 40.000 18.46 15.09 43.77 3.32
3412 3793 4.142988 CGAACACTTGTGTTTGTACTGTGT 60.143 41.667 18.46 0.00 39.04 3.72
3413 3794 4.142988 ACGAACACTTGTGTTTGTACTGTG 60.143 41.667 28.09 11.78 42.68 3.66
3414 3795 3.998341 ACGAACACTTGTGTTTGTACTGT 59.002 39.130 28.09 14.51 42.68 3.55
3415 3796 4.593597 ACGAACACTTGTGTTTGTACTG 57.406 40.909 28.09 14.04 42.68 2.74
3416 3797 6.979817 TGTATACGAACACTTGTGTTTGTACT 59.020 34.615 32.07 25.26 45.77 2.73
3417 3798 7.059212 GTGTATACGAACACTTGTGTTTGTAC 58.941 38.462 32.07 26.56 45.77 2.90
3418 3799 7.164226 GTGTATACGAACACTTGTGTTTGTA 57.836 36.000 31.77 31.77 46.50 2.41
3419 3800 6.039781 GTGTATACGAACACTTGTGTTTGT 57.960 37.500 30.28 30.28 45.12 2.83
3430 3811 3.853103 GTGTATGCGTGTGTATACGAACA 59.147 43.478 5.34 3.51 46.46 3.18
3431 3812 4.100529 AGTGTATGCGTGTGTATACGAAC 58.899 43.478 5.34 0.00 46.46 3.95
3432 3813 4.142643 TGAGTGTATGCGTGTGTATACGAA 60.143 41.667 5.34 0.00 46.46 3.85
3433 3814 3.374678 TGAGTGTATGCGTGTGTATACGA 59.625 43.478 5.34 0.00 46.46 3.43
3434 3815 3.687200 TGAGTGTATGCGTGTGTATACG 58.313 45.455 0.00 0.00 44.00 3.06
3435 3816 5.175126 GGAATGAGTGTATGCGTGTGTATAC 59.825 44.000 0.00 0.00 42.15 1.47
3436 3817 5.286438 GGAATGAGTGTATGCGTGTGTATA 58.714 41.667 0.00 0.00 0.00 1.47
3437 3818 4.119862 GGAATGAGTGTATGCGTGTGTAT 58.880 43.478 0.00 0.00 0.00 2.29
3438 3819 3.517602 GGAATGAGTGTATGCGTGTGTA 58.482 45.455 0.00 0.00 0.00 2.90
3439 3820 2.346803 GGAATGAGTGTATGCGTGTGT 58.653 47.619 0.00 0.00 0.00 3.72
3440 3821 1.665679 GGGAATGAGTGTATGCGTGTG 59.334 52.381 0.00 0.00 0.00 3.82
3441 3822 1.555075 AGGGAATGAGTGTATGCGTGT 59.445 47.619 0.00 0.00 0.00 4.49
3442 3823 2.315925 AGGGAATGAGTGTATGCGTG 57.684 50.000 0.00 0.00 0.00 5.34
3443 3824 2.236146 TCAAGGGAATGAGTGTATGCGT 59.764 45.455 0.00 0.00 0.00 5.24
3444 3825 2.905075 TCAAGGGAATGAGTGTATGCG 58.095 47.619 0.00 0.00 0.00 4.73
3445 3826 3.063997 CGTTCAAGGGAATGAGTGTATGC 59.936 47.826 0.00 0.00 41.62 3.14
3446 3827 3.063997 GCGTTCAAGGGAATGAGTGTATG 59.936 47.826 1.07 0.00 41.62 2.39
3447 3828 3.270877 GCGTTCAAGGGAATGAGTGTAT 58.729 45.455 1.07 0.00 41.62 2.29
3448 3829 2.037902 TGCGTTCAAGGGAATGAGTGTA 59.962 45.455 1.07 0.00 41.62 2.90
3449 3830 1.202758 TGCGTTCAAGGGAATGAGTGT 60.203 47.619 1.07 0.00 41.62 3.55
3450 3831 1.197721 GTGCGTTCAAGGGAATGAGTG 59.802 52.381 1.07 0.00 41.62 3.51
3451 3832 1.202758 TGTGCGTTCAAGGGAATGAGT 60.203 47.619 1.07 0.00 41.62 3.41
3452 3833 1.197721 GTGTGCGTTCAAGGGAATGAG 59.802 52.381 1.07 0.00 41.62 2.90
3453 3834 1.234821 GTGTGCGTTCAAGGGAATGA 58.765 50.000 1.07 0.00 41.62 2.57
3454 3835 0.950836 TGTGTGCGTTCAAGGGAATG 59.049 50.000 0.00 0.00 41.92 2.67
3455 3836 1.541147 CATGTGTGCGTTCAAGGGAAT 59.459 47.619 0.00 0.00 35.05 3.01
3456 3837 0.950836 CATGTGTGCGTTCAAGGGAA 59.049 50.000 0.00 0.00 0.00 3.97
3457 3838 1.514678 GCATGTGTGCGTTCAAGGGA 61.515 55.000 0.00 0.00 42.28 4.20
3458 3839 1.081242 GCATGTGTGCGTTCAAGGG 60.081 57.895 0.00 0.00 42.28 3.95
3459 3840 4.539152 GCATGTGTGCGTTCAAGG 57.461 55.556 0.00 0.00 42.28 3.61
3467 3848 2.498761 CGAAGACGGTGCATGTGTGC 62.499 60.000 0.00 0.00 42.73 4.57
3468 3849 0.943835 TCGAAGACGGTGCATGTGTG 60.944 55.000 0.00 0.00 40.21 3.82
3469 3850 0.249699 TTCGAAGACGGTGCATGTGT 60.250 50.000 0.00 0.00 40.21 3.72
3470 3851 0.865111 TTTCGAAGACGGTGCATGTG 59.135 50.000 0.00 0.00 40.21 3.21
3471 3852 1.148310 CTTTCGAAGACGGTGCATGT 58.852 50.000 0.00 0.00 40.21 3.21
3472 3853 1.428448 TCTTTCGAAGACGGTGCATG 58.572 50.000 0.00 0.00 40.21 4.06
3473 3854 3.906660 TCTTTCGAAGACGGTGCAT 57.093 47.368 0.00 0.00 40.21 3.96
3481 3862 2.623416 TGTCAGCTCAGTCTTTCGAAGA 59.377 45.455 0.00 0.00 34.51 2.87
3482 3863 3.018598 TGTCAGCTCAGTCTTTCGAAG 57.981 47.619 0.00 0.00 0.00 3.79
3483 3864 3.667497 ATGTCAGCTCAGTCTTTCGAA 57.333 42.857 0.00 0.00 0.00 3.71
3484 3865 4.399303 TGATATGTCAGCTCAGTCTTTCGA 59.601 41.667 0.00 0.00 0.00 3.71
3485 3866 4.676546 TGATATGTCAGCTCAGTCTTTCG 58.323 43.478 0.00 0.00 0.00 3.46
3486 3867 7.551035 AAATGATATGTCAGCTCAGTCTTTC 57.449 36.000 0.00 0.00 37.87 2.62
3487 3868 7.609146 TCAAAATGATATGTCAGCTCAGTCTTT 59.391 33.333 0.00 0.00 37.87 2.52
3488 3869 7.108194 TCAAAATGATATGTCAGCTCAGTCTT 58.892 34.615 0.00 0.00 37.87 3.01
3489 3870 6.647229 TCAAAATGATATGTCAGCTCAGTCT 58.353 36.000 0.00 0.00 37.87 3.24
3490 3871 6.915544 TCAAAATGATATGTCAGCTCAGTC 57.084 37.500 0.00 0.00 37.87 3.51
3491 3872 7.692460 TTTCAAAATGATATGTCAGCTCAGT 57.308 32.000 0.00 0.00 37.87 3.41
3492 3873 9.582431 AAATTTCAAAATGATATGTCAGCTCAG 57.418 29.630 0.00 0.00 37.87 3.35
3495 3876 9.507280 CGTAAATTTCAAAATGATATGTCAGCT 57.493 29.630 0.00 0.00 37.87 4.24
3496 3877 9.502145 TCGTAAATTTCAAAATGATATGTCAGC 57.498 29.630 0.00 0.00 37.87 4.26
3505 3886 9.743057 ACAATGACTTCGTAAATTTCAAAATGA 57.257 25.926 0.00 0.00 0.00 2.57
3508 3889 9.672086 CCTACAATGACTTCGTAAATTTCAAAA 57.328 29.630 0.00 0.00 0.00 2.44
3509 3890 7.806014 GCCTACAATGACTTCGTAAATTTCAAA 59.194 33.333 0.00 0.00 0.00 2.69
3510 3891 7.041030 TGCCTACAATGACTTCGTAAATTTCAA 60.041 33.333 0.00 0.00 0.00 2.69
3511 3892 6.428465 TGCCTACAATGACTTCGTAAATTTCA 59.572 34.615 0.00 0.00 0.00 2.69
3512 3893 6.837992 TGCCTACAATGACTTCGTAAATTTC 58.162 36.000 0.00 0.00 0.00 2.17
3513 3894 6.811253 TGCCTACAATGACTTCGTAAATTT 57.189 33.333 0.00 0.00 0.00 1.82
3514 3895 6.823689 AGATGCCTACAATGACTTCGTAAATT 59.176 34.615 0.00 0.00 0.00 1.82
3515 3896 6.349300 AGATGCCTACAATGACTTCGTAAAT 58.651 36.000 0.00 0.00 0.00 1.40
3516 3897 5.730550 AGATGCCTACAATGACTTCGTAAA 58.269 37.500 0.00 0.00 0.00 2.01
3517 3898 5.339008 AGATGCCTACAATGACTTCGTAA 57.661 39.130 0.00 0.00 0.00 3.18
3518 3899 4.497507 CGAGATGCCTACAATGACTTCGTA 60.498 45.833 0.00 0.00 0.00 3.43
3519 3900 3.735208 CGAGATGCCTACAATGACTTCGT 60.735 47.826 0.00 0.00 0.00 3.85
3520 3901 2.791560 CGAGATGCCTACAATGACTTCG 59.208 50.000 0.00 0.00 0.00 3.79
3521 3902 3.786635 ACGAGATGCCTACAATGACTTC 58.213 45.455 0.00 0.00 0.00 3.01
3522 3903 3.195610 TGACGAGATGCCTACAATGACTT 59.804 43.478 0.00 0.00 0.00 3.01
3523 3904 2.760650 TGACGAGATGCCTACAATGACT 59.239 45.455 0.00 0.00 0.00 3.41
3524 3905 3.165058 TGACGAGATGCCTACAATGAC 57.835 47.619 0.00 0.00 0.00 3.06
3525 3906 3.550842 CGATGACGAGATGCCTACAATGA 60.551 47.826 0.00 0.00 42.66 2.57
3526 3907 2.728318 CGATGACGAGATGCCTACAATG 59.272 50.000 0.00 0.00 42.66 2.82
3527 3908 2.362397 ACGATGACGAGATGCCTACAAT 59.638 45.455 0.00 0.00 42.66 2.71
3528 3909 1.749063 ACGATGACGAGATGCCTACAA 59.251 47.619 0.00 0.00 42.66 2.41
3529 3910 1.333931 GACGATGACGAGATGCCTACA 59.666 52.381 0.00 0.00 42.66 2.74
3530 3911 1.333931 TGACGATGACGAGATGCCTAC 59.666 52.381 0.00 0.00 42.66 3.18
3531 3912 1.675552 TGACGATGACGAGATGCCTA 58.324 50.000 0.00 0.00 42.66 3.93
3532 3913 1.000827 GATGACGATGACGAGATGCCT 60.001 52.381 0.00 0.00 42.66 4.75
3533 3914 1.413382 GATGACGATGACGAGATGCC 58.587 55.000 0.00 0.00 42.66 4.40
3534 3915 1.048494 CGATGACGATGACGAGATGC 58.952 55.000 0.00 0.00 42.66 3.91
3535 3916 2.670401 TCGATGACGATGACGAGATG 57.330 50.000 0.00 0.00 43.81 2.90
3545 3926 2.410785 AACGTTTCTGTCGATGACGA 57.589 45.000 13.23 0.00 46.56 4.20
3546 3927 3.181774 AGAAAACGTTTCTGTCGATGACG 59.818 43.478 15.01 0.00 34.95 4.35
3547 3928 4.376109 GGAGAAAACGTTTCTGTCGATGAC 60.376 45.833 15.01 1.65 0.00 3.06
3548 3929 3.739300 GGAGAAAACGTTTCTGTCGATGA 59.261 43.478 15.01 0.00 0.00 2.92
3549 3930 3.120649 GGGAGAAAACGTTTCTGTCGATG 60.121 47.826 15.01 0.00 0.00 3.84
3550 3931 3.064931 GGGAGAAAACGTTTCTGTCGAT 58.935 45.455 15.01 0.00 0.00 3.59
3551 3932 2.159071 TGGGAGAAAACGTTTCTGTCGA 60.159 45.455 15.01 0.00 0.00 4.20
3552 3933 2.033151 GTGGGAGAAAACGTTTCTGTCG 60.033 50.000 15.01 0.00 0.00 4.35
3553 3934 3.002348 CAGTGGGAGAAAACGTTTCTGTC 59.998 47.826 15.01 8.54 0.00 3.51
3554 3935 2.943033 CAGTGGGAGAAAACGTTTCTGT 59.057 45.455 15.01 0.00 0.00 3.41
3555 3936 3.202906 TCAGTGGGAGAAAACGTTTCTG 58.797 45.455 15.01 14.54 0.00 3.02
3556 3937 3.553828 TCAGTGGGAGAAAACGTTTCT 57.446 42.857 15.01 12.74 0.00 2.52
3557 3938 4.537015 CATTCAGTGGGAGAAAACGTTTC 58.463 43.478 15.01 8.08 0.00 2.78
3558 3939 3.243401 GCATTCAGTGGGAGAAAACGTTT 60.243 43.478 7.96 7.96 0.00 3.60
3559 3940 2.293399 GCATTCAGTGGGAGAAAACGTT 59.707 45.455 0.00 0.00 0.00 3.99
3560 3941 1.880027 GCATTCAGTGGGAGAAAACGT 59.120 47.619 0.00 0.00 0.00 3.99
3561 3942 1.879380 TGCATTCAGTGGGAGAAAACG 59.121 47.619 0.00 0.00 0.00 3.60
3562 3943 2.622942 TGTGCATTCAGTGGGAGAAAAC 59.377 45.455 0.00 0.00 0.00 2.43
3563 3944 2.622942 GTGTGCATTCAGTGGGAGAAAA 59.377 45.455 0.00 0.00 0.00 2.29
3564 3945 2.229792 GTGTGCATTCAGTGGGAGAAA 58.770 47.619 0.00 0.00 0.00 2.52
3565 3946 1.545428 GGTGTGCATTCAGTGGGAGAA 60.545 52.381 0.00 0.00 0.00 2.87
3566 3947 0.036732 GGTGTGCATTCAGTGGGAGA 59.963 55.000 0.00 0.00 0.00 3.71
3567 3948 1.300971 CGGTGTGCATTCAGTGGGAG 61.301 60.000 0.00 0.00 0.00 4.30
3568 3949 1.302431 CGGTGTGCATTCAGTGGGA 60.302 57.895 0.00 0.00 0.00 4.37
3569 3950 1.577328 GACGGTGTGCATTCAGTGGG 61.577 60.000 0.00 0.00 0.00 4.61
3570 3951 1.868997 GACGGTGTGCATTCAGTGG 59.131 57.895 0.00 0.00 0.00 4.00
3571 3952 1.492873 CGACGGTGTGCATTCAGTG 59.507 57.895 0.00 0.00 0.00 3.66
3572 3953 1.667830 CCGACGGTGTGCATTCAGT 60.668 57.895 5.48 0.00 0.00 3.41
3573 3954 0.948623 TTCCGACGGTGTGCATTCAG 60.949 55.000 14.79 0.00 0.00 3.02
3574 3955 0.533085 TTTCCGACGGTGTGCATTCA 60.533 50.000 14.79 0.00 0.00 2.57
3575 3956 0.802494 ATTTCCGACGGTGTGCATTC 59.198 50.000 14.79 0.00 0.00 2.67
3576 3957 0.802494 GATTTCCGACGGTGTGCATT 59.198 50.000 14.79 0.00 0.00 3.56
3577 3958 1.024579 GGATTTCCGACGGTGTGCAT 61.025 55.000 14.79 0.00 0.00 3.96
3578 3959 1.669760 GGATTTCCGACGGTGTGCA 60.670 57.895 14.79 0.00 0.00 4.57
3579 3960 1.375523 AGGATTTCCGACGGTGTGC 60.376 57.895 14.79 6.55 42.08 4.57
3580 3961 0.037697 TCAGGATTTCCGACGGTGTG 60.038 55.000 14.79 3.94 42.08 3.82
3581 3962 0.682852 TTCAGGATTTCCGACGGTGT 59.317 50.000 14.79 0.62 42.08 4.16
3582 3963 1.803334 TTTCAGGATTTCCGACGGTG 58.197 50.000 14.79 3.50 42.08 4.94
3583 3964 2.781681 ATTTCAGGATTTCCGACGGT 57.218 45.000 14.79 0.00 42.08 4.83
3584 3965 5.277828 GGATTTATTTCAGGATTTCCGACGG 60.278 44.000 7.84 7.84 42.08 4.79
3585 3966 5.295787 TGGATTTATTTCAGGATTTCCGACG 59.704 40.000 0.00 0.00 42.08 5.12
3586 3967 6.542370 TCTGGATTTATTTCAGGATTTCCGAC 59.458 38.462 0.00 0.00 42.08 4.79
3587 3968 6.658849 TCTGGATTTATTTCAGGATTTCCGA 58.341 36.000 0.00 0.00 42.08 4.55
3588 3969 6.942532 TCTGGATTTATTTCAGGATTTCCG 57.057 37.500 0.00 0.00 42.08 4.30
3595 3976 8.971321 CGCATTTATTTCTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
3596 3977 9.734620 TCGCATTTATTTCTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
3597 3978 9.734620 CTCGCATTTATTTCTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
3598 3979 8.694394 GCTCGCATTTATTTCTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
3599 3980 8.196771 TGCTCGCATTTATTTCTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
3600 3981 7.715657 TGCTCGCATTTATTTCTGGATTTATT 58.284 30.769 0.00 0.00 0.00 1.40
3601 3982 7.275888 TGCTCGCATTTATTTCTGGATTTAT 57.724 32.000 0.00 0.00 0.00 1.40
3602 3983 6.691754 TGCTCGCATTTATTTCTGGATTTA 57.308 33.333 0.00 0.00 0.00 1.40
3603 3984 5.581126 TGCTCGCATTTATTTCTGGATTT 57.419 34.783 0.00 0.00 0.00 2.17
3604 3985 5.300034 TGATGCTCGCATTTATTTCTGGATT 59.700 36.000 5.79 0.00 36.70 3.01
3605 3986 4.823442 TGATGCTCGCATTTATTTCTGGAT 59.177 37.500 5.79 0.00 36.70 3.41
3606 3987 4.198530 TGATGCTCGCATTTATTTCTGGA 58.801 39.130 5.79 0.00 36.70 3.86
3607 3988 4.534168 CTGATGCTCGCATTTATTTCTGG 58.466 43.478 5.79 0.00 36.70 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.