Multiple sequence alignment - TraesCS3B01G327400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G327400 chr3B 100.000 3412 0 0 1 3412 528079803 528076392 0.000000e+00 6301.0
1 TraesCS3B01G327400 chr3B 91.892 74 6 0 409 482 134005229 134005156 1.670000e-18 104.0
2 TraesCS3B01G327400 chr3B 94.231 52 1 2 1550 1600 701409717 701409667 1.020000e-10 78.7
3 TraesCS3B01G327400 chr3A 93.132 1718 61 14 1712 3408 523333267 523331586 0.000000e+00 2466.0
4 TraesCS3B01G327400 chr3A 96.242 612 17 5 578 1185 523334548 523333939 0.000000e+00 998.0
5 TraesCS3B01G327400 chr3A 88.621 290 15 7 1327 1600 523333678 523333391 1.520000e-88 337.0
6 TraesCS3B01G327400 chr3A 81.081 444 43 11 1 405 26816407 26815966 1.980000e-82 316.0
7 TraesCS3B01G327400 chr3A 84.146 82 13 0 406 487 58951764 58951683 2.820000e-11 80.5
8 TraesCS3B01G327400 chr3A 91.228 57 1 4 1547 1600 355276708 355276763 1.310000e-09 75.0
9 TraesCS3B01G327400 chr3D 91.223 1595 74 17 1831 3412 402493385 402491844 0.000000e+00 2109.0
10 TraesCS3B01G327400 chr3D 90.349 974 41 32 571 1534 402494587 402493657 0.000000e+00 1229.0
11 TraesCS3B01G327400 chr3D 92.063 63 4 1 508 570 402497563 402497502 1.690000e-13 87.9
12 TraesCS3B01G327400 chr7D 87.104 442 25 5 1 412 47511387 47510948 3.990000e-129 472.0
13 TraesCS3B01G327400 chr5A 87.097 434 25 8 1 405 353345191 353344760 2.400000e-126 462.0
14 TraesCS3B01G327400 chr5A 85.915 213 17 6 204 405 354548354 354548564 7.420000e-52 215.0
15 TraesCS3B01G327400 chr5A 96.000 50 0 2 1552 1600 450750798 450750750 2.820000e-11 80.5
16 TraesCS3B01G327400 chr5A 89.831 59 4 2 1552 1609 482768099 482768156 1.310000e-09 75.0
17 TraesCS3B01G327400 chr6D 87.050 417 38 6 1 405 100925930 100926342 1.120000e-124 457.0
18 TraesCS3B01G327400 chr6A 83.032 442 35 22 3 405 26792990 26793430 6.960000e-97 364.0
19 TraesCS3B01G327400 chr2B 83.141 433 39 13 3 405 109956719 109956291 6.960000e-97 364.0
20 TraesCS3B01G327400 chr2B 80.556 432 52 16 1 405 14534545 14534119 1.540000e-78 303.0
21 TraesCS3B01G327400 chr2B 84.821 224 16 4 1 206 776873769 776873992 3.450000e-50 209.0
22 TraesCS3B01G327400 chr2B 85.393 89 12 1 3211 3298 754662155 754662243 1.300000e-14 91.6
23 TraesCS3B01G327400 chr1B 82.313 441 41 21 1 407 87807506 87807069 7.010000e-92 348.0
24 TraesCS3B01G327400 chr1B 87.156 218 13 5 204 408 87876924 87876709 2.050000e-57 233.0
25 TraesCS3B01G327400 chr1B 89.655 58 5 1 1554 1610 512989046 512989103 4.720000e-09 73.1
26 TraesCS3B01G327400 chr4D 95.588 204 9 0 1 204 318758570 318758773 9.130000e-86 327.0
27 TraesCS3B01G327400 chr4D 86.449 214 16 3 204 405 318753852 318754064 4.430000e-54 222.0
28 TraesCS3B01G327400 chr5D 88.448 277 12 3 1 257 335960869 335960593 1.980000e-82 316.0
29 TraesCS3B01G327400 chr7A 80.401 449 41 30 1 405 163354723 163354278 7.160000e-77 298.0
30 TraesCS3B01G327400 chr7A 85.019 267 29 10 1 259 462941218 462941481 9.390000e-66 261.0
31 TraesCS3B01G327400 chr7A 84.211 76 8 3 2935 3010 41811093 41811164 1.700000e-08 71.3
32 TraesCS3B01G327400 chr1A 84.122 296 29 11 6 283 120845213 120845508 1.560000e-68 270.0
33 TraesCS3B01G327400 chr7B 80.569 211 27 6 3208 3407 200900045 200900252 2.120000e-32 150.0
34 TraesCS3B01G327400 chr4B 93.671 79 5 0 406 484 92957387 92957465 5.980000e-23 119.0
35 TraesCS3B01G327400 chr4A 84.158 101 14 1 406 506 714380499 714380401 2.800000e-16 97.1
36 TraesCS3B01G327400 chr5B 96.078 51 0 2 1552 1601 411034868 411034819 7.850000e-12 82.4
37 TraesCS3B01G327400 chr2A 88.060 67 4 4 1551 1616 450885205 450885268 3.650000e-10 76.8
38 TraesCS3B01G327400 chr1D 94.231 52 0 3 1550 1600 307830194 307830145 3.650000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G327400 chr3B 528076392 528079803 3411 True 6301.000000 6301 100.000000 1 3412 1 chr3B.!!$R2 3411
1 TraesCS3B01G327400 chr3A 523331586 523334548 2962 True 1267.000000 2466 92.665000 578 3408 3 chr3A.!!$R3 2830
2 TraesCS3B01G327400 chr3D 402491844 402497563 5719 True 1141.966667 2109 91.211667 508 3412 3 chr3D.!!$R1 2904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.035056 GGTGGAAGATGAGGTGGTGG 60.035 60.0 0.0 0.0 0.0 4.61 F
329 330 0.042731 AGGAAGGTGATCGGGGAGAA 59.957 55.0 0.0 0.0 0.0 2.87 F
811 3740 0.249489 CTATTCGCCCTTCCACCTCG 60.249 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 4767 0.763986 AACAGGCAACCAGGGCATTT 60.764 50.000 0.00 0.0 35.46 2.32 R
2288 5442 2.294233 GTCAACAGCAAGCCTCATTGAA 59.706 45.455 0.00 0.0 31.09 2.69 R
2528 5682 2.061740 GAACTTGCGGTAGTTCGAGT 57.938 50.000 9.49 0.0 43.10 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.759795 AGAGCAGGAAGTTGCCCC 59.240 61.111 0.00 0.00 45.18 5.80
18 19 1.849823 AGAGCAGGAAGTTGCCCCT 60.850 57.895 0.00 0.00 45.18 4.79
19 20 1.377856 GAGCAGGAAGTTGCCCCTC 60.378 63.158 0.00 0.00 45.18 4.30
20 21 2.747855 GCAGGAAGTTGCCCCTCG 60.748 66.667 0.00 0.00 38.13 4.63
21 22 2.750350 CAGGAAGTTGCCCCTCGT 59.250 61.111 0.00 0.00 0.00 4.18
22 23 1.980052 CAGGAAGTTGCCCCTCGTA 59.020 57.895 0.00 0.00 0.00 3.43
23 24 0.323629 CAGGAAGTTGCCCCTCGTAA 59.676 55.000 0.00 0.00 0.00 3.18
24 25 0.613777 AGGAAGTTGCCCCTCGTAAG 59.386 55.000 0.00 0.00 0.00 2.34
25 26 1.025113 GGAAGTTGCCCCTCGTAAGC 61.025 60.000 0.00 0.00 37.18 3.09
26 27 0.036294 GAAGTTGCCCCTCGTAAGCT 60.036 55.000 0.00 0.00 37.18 3.74
27 28 0.400594 AAGTTGCCCCTCGTAAGCTT 59.599 50.000 3.48 3.48 37.18 3.74
28 29 0.036294 AGTTGCCCCTCGTAAGCTTC 60.036 55.000 0.00 0.00 37.18 3.86
29 30 0.036294 GTTGCCCCTCGTAAGCTTCT 60.036 55.000 0.00 0.00 37.18 2.85
30 31 0.249398 TTGCCCCTCGTAAGCTTCTC 59.751 55.000 0.00 0.00 37.18 2.87
31 32 0.614979 TGCCCCTCGTAAGCTTCTCT 60.615 55.000 0.00 0.00 37.18 3.10
32 33 0.537653 GCCCCTCGTAAGCTTCTCTT 59.462 55.000 0.00 0.00 38.79 2.85
33 34 1.740718 GCCCCTCGTAAGCTTCTCTTG 60.741 57.143 0.00 0.00 36.25 3.02
34 35 1.550976 CCCCTCGTAAGCTTCTCTTGT 59.449 52.381 0.00 0.00 36.25 3.16
35 36 2.611518 CCCTCGTAAGCTTCTCTTGTG 58.388 52.381 0.00 0.00 36.25 3.33
36 37 2.231478 CCCTCGTAAGCTTCTCTTGTGA 59.769 50.000 0.00 0.00 36.25 3.58
37 38 3.118956 CCCTCGTAAGCTTCTCTTGTGAT 60.119 47.826 0.00 0.00 36.25 3.06
38 39 3.862267 CCTCGTAAGCTTCTCTTGTGATG 59.138 47.826 0.00 0.00 36.25 3.07
39 40 3.849911 TCGTAAGCTTCTCTTGTGATGG 58.150 45.455 0.00 0.00 36.25 3.51
40 41 2.349886 CGTAAGCTTCTCTTGTGATGGC 59.650 50.000 0.00 0.00 36.25 4.40
41 42 1.446907 AAGCTTCTCTTGTGATGGCG 58.553 50.000 0.00 0.00 32.79 5.69
42 43 0.610174 AGCTTCTCTTGTGATGGCGA 59.390 50.000 0.00 0.00 0.00 5.54
43 44 1.209019 AGCTTCTCTTGTGATGGCGAT 59.791 47.619 0.00 0.00 0.00 4.58
44 45 1.596727 GCTTCTCTTGTGATGGCGATC 59.403 52.381 1.08 1.08 0.00 3.69
45 46 2.208431 CTTCTCTTGTGATGGCGATCC 58.792 52.381 6.23 0.00 0.00 3.36
46 47 0.103026 TCTCTTGTGATGGCGATCCG 59.897 55.000 6.23 0.00 34.14 4.18
47 48 0.103026 CTCTTGTGATGGCGATCCGA 59.897 55.000 6.23 0.00 34.14 4.55
48 49 0.103026 TCTTGTGATGGCGATCCGAG 59.897 55.000 6.23 7.08 34.14 4.63
49 50 0.877649 CTTGTGATGGCGATCCGAGG 60.878 60.000 6.23 0.00 34.14 4.63
50 51 2.029666 GTGATGGCGATCCGAGGG 59.970 66.667 6.23 0.00 34.14 4.30
51 52 2.123468 TGATGGCGATCCGAGGGA 60.123 61.111 6.23 0.00 35.55 4.20
52 53 2.203082 TGATGGCGATCCGAGGGAG 61.203 63.158 6.23 0.00 34.05 4.30
53 54 2.919856 ATGGCGATCCGAGGGAGG 60.920 66.667 0.00 0.00 34.05 4.30
54 55 3.758133 ATGGCGATCCGAGGGAGGT 62.758 63.158 0.00 0.00 34.05 3.85
55 56 3.917760 GGCGATCCGAGGGAGGTG 61.918 72.222 0.00 0.00 34.05 4.00
56 57 3.917760 GCGATCCGAGGGAGGTGG 61.918 72.222 0.00 0.00 34.05 4.61
57 58 2.442272 CGATCCGAGGGAGGTGGT 60.442 66.667 0.00 0.00 34.05 4.16
58 59 2.786495 CGATCCGAGGGAGGTGGTG 61.786 68.421 0.00 0.00 34.05 4.17
59 60 1.686110 GATCCGAGGGAGGTGGTGT 60.686 63.158 0.00 0.00 34.05 4.16
60 61 1.229529 ATCCGAGGGAGGTGGTGTT 60.230 57.895 0.00 0.00 34.05 3.32
61 62 1.553690 ATCCGAGGGAGGTGGTGTTG 61.554 60.000 0.00 0.00 34.05 3.33
62 63 2.347490 CGAGGGAGGTGGTGTTGG 59.653 66.667 0.00 0.00 0.00 3.77
63 64 2.516888 CGAGGGAGGTGGTGTTGGT 61.517 63.158 0.00 0.00 0.00 3.67
64 65 1.073199 GAGGGAGGTGGTGTTGGTG 59.927 63.158 0.00 0.00 0.00 4.17
65 66 2.115266 GGGAGGTGGTGTTGGTGG 59.885 66.667 0.00 0.00 0.00 4.61
66 67 2.457323 GGGAGGTGGTGTTGGTGGA 61.457 63.158 0.00 0.00 0.00 4.02
67 68 1.073199 GGAGGTGGTGTTGGTGGAG 59.927 63.158 0.00 0.00 0.00 3.86
68 69 1.073199 GAGGTGGTGTTGGTGGAGG 59.927 63.158 0.00 0.00 0.00 4.30
69 70 1.696314 AGGTGGTGTTGGTGGAGGT 60.696 57.895 0.00 0.00 0.00 3.85
70 71 1.528309 GGTGGTGTTGGTGGAGGTG 60.528 63.158 0.00 0.00 0.00 4.00
71 72 1.528309 GTGGTGTTGGTGGAGGTGG 60.528 63.158 0.00 0.00 0.00 4.61
72 73 1.694525 TGGTGTTGGTGGAGGTGGA 60.695 57.895 0.00 0.00 0.00 4.02
73 74 1.282653 TGGTGTTGGTGGAGGTGGAA 61.283 55.000 0.00 0.00 0.00 3.53
74 75 0.537371 GGTGTTGGTGGAGGTGGAAG 60.537 60.000 0.00 0.00 0.00 3.46
75 76 0.472471 GTGTTGGTGGAGGTGGAAGA 59.528 55.000 0.00 0.00 0.00 2.87
76 77 1.073923 GTGTTGGTGGAGGTGGAAGAT 59.926 52.381 0.00 0.00 0.00 2.40
77 78 1.073763 TGTTGGTGGAGGTGGAAGATG 59.926 52.381 0.00 0.00 0.00 2.90
78 79 1.351017 GTTGGTGGAGGTGGAAGATGA 59.649 52.381 0.00 0.00 0.00 2.92
79 80 1.279496 TGGTGGAGGTGGAAGATGAG 58.721 55.000 0.00 0.00 0.00 2.90
80 81 0.543749 GGTGGAGGTGGAAGATGAGG 59.456 60.000 0.00 0.00 0.00 3.86
81 82 1.280457 GTGGAGGTGGAAGATGAGGT 58.720 55.000 0.00 0.00 0.00 3.85
82 83 1.065854 GTGGAGGTGGAAGATGAGGTG 60.066 57.143 0.00 0.00 0.00 4.00
83 84 0.543749 GGAGGTGGAAGATGAGGTGG 59.456 60.000 0.00 0.00 0.00 4.61
84 85 1.280457 GAGGTGGAAGATGAGGTGGT 58.720 55.000 0.00 0.00 0.00 4.16
85 86 0.987294 AGGTGGAAGATGAGGTGGTG 59.013 55.000 0.00 0.00 0.00 4.17
86 87 0.035056 GGTGGAAGATGAGGTGGTGG 60.035 60.000 0.00 0.00 0.00 4.61
87 88 0.693049 GTGGAAGATGAGGTGGTGGT 59.307 55.000 0.00 0.00 0.00 4.16
88 89 0.692476 TGGAAGATGAGGTGGTGGTG 59.308 55.000 0.00 0.00 0.00 4.17
89 90 0.984230 GGAAGATGAGGTGGTGGTGA 59.016 55.000 0.00 0.00 0.00 4.02
90 91 1.065854 GGAAGATGAGGTGGTGGTGAG 60.066 57.143 0.00 0.00 0.00 3.51
91 92 0.326264 AAGATGAGGTGGTGGTGAGC 59.674 55.000 0.00 0.00 0.00 4.26
92 93 1.448540 GATGAGGTGGTGGTGAGCG 60.449 63.158 0.00 0.00 0.00 5.03
93 94 3.612247 ATGAGGTGGTGGTGAGCGC 62.612 63.158 0.00 0.00 0.00 5.92
94 95 4.314440 GAGGTGGTGGTGAGCGCA 62.314 66.667 11.47 0.00 0.00 6.09
95 96 4.626081 AGGTGGTGGTGAGCGCAC 62.626 66.667 12.67 12.67 44.39 5.34
111 112 4.284550 ACCCATGGTGCTTGGCGT 62.285 61.111 11.73 0.00 32.98 5.68
112 113 3.443045 CCCATGGTGCTTGGCGTC 61.443 66.667 11.73 0.00 32.60 5.19
113 114 2.672651 CCATGGTGCTTGGCGTCA 60.673 61.111 2.57 0.00 0.00 4.35
114 115 2.048023 CCATGGTGCTTGGCGTCAT 61.048 57.895 2.57 0.00 0.00 3.06
115 116 1.138036 CATGGTGCTTGGCGTCATG 59.862 57.895 0.00 0.00 36.14 3.07
116 117 2.048023 ATGGTGCTTGGCGTCATGG 61.048 57.895 4.97 0.00 0.00 3.66
117 118 4.120331 GGTGCTTGGCGTCATGGC 62.120 66.667 4.97 6.78 45.12 4.40
138 139 2.824041 GGCGGCGGTGAACATGAT 60.824 61.111 9.78 0.00 0.00 2.45
139 140 1.522806 GGCGGCGGTGAACATGATA 60.523 57.895 9.78 0.00 0.00 2.15
140 141 0.884704 GGCGGCGGTGAACATGATAT 60.885 55.000 9.78 0.00 0.00 1.63
141 142 0.944386 GCGGCGGTGAACATGATATT 59.056 50.000 9.78 0.00 0.00 1.28
142 143 1.334059 GCGGCGGTGAACATGATATTG 60.334 52.381 9.78 0.00 0.00 1.90
143 144 2.209273 CGGCGGTGAACATGATATTGA 58.791 47.619 0.00 0.00 0.00 2.57
144 145 2.807967 CGGCGGTGAACATGATATTGAT 59.192 45.455 0.00 0.00 0.00 2.57
145 146 3.120546 CGGCGGTGAACATGATATTGATC 60.121 47.826 0.00 0.00 0.00 2.92
146 147 3.120546 GGCGGTGAACATGATATTGATCG 60.121 47.826 0.00 0.00 34.49 3.69
147 148 3.665323 GCGGTGAACATGATATTGATCGC 60.665 47.826 0.00 0.00 34.49 4.58
148 149 3.422214 CGGTGAACATGATATTGATCGCG 60.422 47.826 0.00 0.00 34.49 5.87
149 150 3.120546 GGTGAACATGATATTGATCGCGG 60.121 47.826 6.13 0.00 34.49 6.46
150 151 3.740832 GTGAACATGATATTGATCGCGGA 59.259 43.478 6.13 0.00 34.49 5.54
151 152 3.989817 TGAACATGATATTGATCGCGGAG 59.010 43.478 6.13 0.00 34.49 4.63
152 153 2.964740 ACATGATATTGATCGCGGAGG 58.035 47.619 6.13 0.00 34.49 4.30
153 154 2.300152 ACATGATATTGATCGCGGAGGT 59.700 45.455 6.13 0.00 34.49 3.85
154 155 3.509967 ACATGATATTGATCGCGGAGGTA 59.490 43.478 6.13 0.00 34.49 3.08
155 156 3.850122 TGATATTGATCGCGGAGGTAG 57.150 47.619 6.13 0.00 34.49 3.18
156 157 2.094700 TGATATTGATCGCGGAGGTAGC 60.095 50.000 6.13 0.00 34.49 3.58
157 158 1.617322 TATTGATCGCGGAGGTAGCT 58.383 50.000 6.13 0.00 0.00 3.32
158 159 1.617322 ATTGATCGCGGAGGTAGCTA 58.383 50.000 6.13 0.00 0.00 3.32
159 160 0.952280 TTGATCGCGGAGGTAGCTAG 59.048 55.000 6.13 0.00 0.00 3.42
160 161 0.889638 TGATCGCGGAGGTAGCTAGG 60.890 60.000 6.13 0.00 0.00 3.02
161 162 0.890090 GATCGCGGAGGTAGCTAGGT 60.890 60.000 6.13 0.00 0.00 3.08
162 163 1.173444 ATCGCGGAGGTAGCTAGGTG 61.173 60.000 6.13 0.00 0.00 4.00
163 164 2.417936 GCGGAGGTAGCTAGGTGC 59.582 66.667 4.27 2.48 43.29 5.01
164 165 2.423898 GCGGAGGTAGCTAGGTGCA 61.424 63.158 12.19 0.00 45.94 4.57
165 166 1.956629 GCGGAGGTAGCTAGGTGCAA 61.957 60.000 12.19 0.00 45.94 4.08
166 167 0.753262 CGGAGGTAGCTAGGTGCAAT 59.247 55.000 12.19 0.00 45.94 3.56
167 168 1.269831 CGGAGGTAGCTAGGTGCAATC 60.270 57.143 12.19 8.77 45.94 2.67
168 169 2.043227 GGAGGTAGCTAGGTGCAATCT 58.957 52.381 12.19 0.00 45.94 2.40
169 170 2.036604 GGAGGTAGCTAGGTGCAATCTC 59.963 54.545 12.19 8.86 45.94 2.75
170 171 2.962421 GAGGTAGCTAGGTGCAATCTCT 59.038 50.000 12.19 0.00 45.94 3.10
171 172 3.379452 AGGTAGCTAGGTGCAATCTCTT 58.621 45.455 12.19 0.00 45.94 2.85
172 173 3.777522 AGGTAGCTAGGTGCAATCTCTTT 59.222 43.478 12.19 0.00 45.94 2.52
173 174 4.123506 GGTAGCTAGGTGCAATCTCTTTC 58.876 47.826 12.19 0.00 45.94 2.62
174 175 2.898705 AGCTAGGTGCAATCTCTTTCG 58.101 47.619 0.00 0.00 45.94 3.46
175 176 2.497675 AGCTAGGTGCAATCTCTTTCGA 59.502 45.455 0.00 0.00 45.94 3.71
176 177 3.133721 AGCTAGGTGCAATCTCTTTCGAT 59.866 43.478 0.00 0.00 45.94 3.59
177 178 3.492756 GCTAGGTGCAATCTCTTTCGATC 59.507 47.826 0.00 0.00 42.31 3.69
178 179 3.902881 AGGTGCAATCTCTTTCGATCT 57.097 42.857 0.00 0.00 0.00 2.75
179 180 5.508153 GCTAGGTGCAATCTCTTTCGATCTA 60.508 44.000 0.00 0.00 42.31 1.98
180 181 5.344743 AGGTGCAATCTCTTTCGATCTAA 57.655 39.130 0.00 0.00 0.00 2.10
181 182 5.923204 AGGTGCAATCTCTTTCGATCTAAT 58.077 37.500 0.00 0.00 0.00 1.73
182 183 5.757320 AGGTGCAATCTCTTTCGATCTAATG 59.243 40.000 0.00 0.00 0.00 1.90
183 184 5.755375 GGTGCAATCTCTTTCGATCTAATGA 59.245 40.000 0.00 0.00 0.00 2.57
184 185 6.073873 GGTGCAATCTCTTTCGATCTAATGAG 60.074 42.308 13.67 13.67 33.89 2.90
185 186 5.987953 TGCAATCTCTTTCGATCTAATGAGG 59.012 40.000 17.55 7.62 33.59 3.86
186 187 6.183360 TGCAATCTCTTTCGATCTAATGAGGA 60.183 38.462 17.55 8.94 33.59 3.71
187 188 6.703607 GCAATCTCTTTCGATCTAATGAGGAA 59.296 38.462 17.55 5.40 33.59 3.36
188 189 7.095691 GCAATCTCTTTCGATCTAATGAGGAAG 60.096 40.741 17.55 11.12 33.59 3.46
189 190 7.831691 ATCTCTTTCGATCTAATGAGGAAGA 57.168 36.000 17.55 5.25 33.59 2.87
190 191 7.270757 TCTCTTTCGATCTAATGAGGAAGAG 57.729 40.000 17.55 12.72 33.59 2.85
191 192 6.264292 TCTCTTTCGATCTAATGAGGAAGAGG 59.736 42.308 17.55 2.25 33.59 3.69
192 193 4.592485 TTCGATCTAATGAGGAAGAGGC 57.408 45.455 0.00 0.00 0.00 4.70
193 194 3.838565 TCGATCTAATGAGGAAGAGGCT 58.161 45.455 0.00 0.00 0.00 4.58
194 195 3.823873 TCGATCTAATGAGGAAGAGGCTC 59.176 47.826 6.34 6.34 0.00 4.70
195 196 3.826157 CGATCTAATGAGGAAGAGGCTCT 59.174 47.826 12.24 12.24 0.00 4.09
196 197 4.321156 CGATCTAATGAGGAAGAGGCTCTG 60.321 50.000 19.53 1.82 0.00 3.35
197 198 3.987745 TCTAATGAGGAAGAGGCTCTGT 58.012 45.455 19.53 8.35 0.00 3.41
198 199 4.357325 TCTAATGAGGAAGAGGCTCTGTT 58.643 43.478 19.53 2.40 0.00 3.16
199 200 5.519808 TCTAATGAGGAAGAGGCTCTGTTA 58.480 41.667 19.53 9.50 0.00 2.41
200 201 4.479786 AATGAGGAAGAGGCTCTGTTAC 57.520 45.455 19.53 3.72 0.00 2.50
201 202 2.180276 TGAGGAAGAGGCTCTGTTACC 58.820 52.381 19.53 17.86 0.00 2.85
202 203 2.180276 GAGGAAGAGGCTCTGTTACCA 58.820 52.381 19.53 0.00 0.00 3.25
203 204 2.769095 GAGGAAGAGGCTCTGTTACCAT 59.231 50.000 19.53 0.00 0.00 3.55
204 205 2.503356 AGGAAGAGGCTCTGTTACCATG 59.497 50.000 19.53 0.00 0.00 3.66
205 206 2.237392 GGAAGAGGCTCTGTTACCATGT 59.763 50.000 19.53 0.00 0.00 3.21
206 207 3.265791 GAAGAGGCTCTGTTACCATGTG 58.734 50.000 19.53 0.00 0.00 3.21
207 208 2.540383 AGAGGCTCTGTTACCATGTGA 58.460 47.619 17.96 0.00 0.00 3.58
208 209 2.906389 AGAGGCTCTGTTACCATGTGAA 59.094 45.455 17.96 0.00 0.00 3.18
209 210 3.327757 AGAGGCTCTGTTACCATGTGAAA 59.672 43.478 17.96 0.00 0.00 2.69
210 211 3.412386 AGGCTCTGTTACCATGTGAAAC 58.588 45.455 0.00 0.00 37.35 2.78
211 212 2.159627 GGCTCTGTTACCATGTGAAACG 59.840 50.000 0.00 0.00 42.39 3.60
212 213 3.064207 GCTCTGTTACCATGTGAAACGA 58.936 45.455 0.00 0.00 42.39 3.85
213 214 3.684788 GCTCTGTTACCATGTGAAACGAT 59.315 43.478 0.00 0.00 42.39 3.73
214 215 4.868171 GCTCTGTTACCATGTGAAACGATA 59.132 41.667 0.00 0.00 42.39 2.92
215 216 5.523916 GCTCTGTTACCATGTGAAACGATAT 59.476 40.000 0.00 0.00 42.39 1.63
216 217 6.700081 GCTCTGTTACCATGTGAAACGATATA 59.300 38.462 0.00 0.00 42.39 0.86
217 218 7.096023 GCTCTGTTACCATGTGAAACGATATAG 60.096 40.741 0.00 0.00 42.39 1.31
218 219 7.207383 TCTGTTACCATGTGAAACGATATAGG 58.793 38.462 0.00 0.00 42.39 2.57
219 220 7.068962 TCTGTTACCATGTGAAACGATATAGGA 59.931 37.037 0.00 0.00 42.39 2.94
220 221 7.557724 TGTTACCATGTGAAACGATATAGGAA 58.442 34.615 0.00 0.00 42.39 3.36
221 222 7.709182 TGTTACCATGTGAAACGATATAGGAAG 59.291 37.037 0.00 0.00 42.39 3.46
222 223 5.057149 ACCATGTGAAACGATATAGGAAGC 58.943 41.667 0.00 0.00 42.39 3.86
223 224 4.150627 CCATGTGAAACGATATAGGAAGCG 59.849 45.833 0.00 0.00 42.39 4.68
224 225 4.380841 TGTGAAACGATATAGGAAGCGT 57.619 40.909 0.00 0.00 42.39 5.07
226 227 4.565166 TGTGAAACGATATAGGAAGCGTTG 59.435 41.667 0.00 0.00 44.99 4.10
227 228 4.802039 GTGAAACGATATAGGAAGCGTTGA 59.198 41.667 0.00 0.00 44.99 3.18
228 229 5.290158 GTGAAACGATATAGGAAGCGTTGAA 59.710 40.000 0.00 0.00 44.99 2.69
229 230 5.290158 TGAAACGATATAGGAAGCGTTGAAC 59.710 40.000 0.00 0.00 44.99 3.18
230 231 3.714391 ACGATATAGGAAGCGTTGAACC 58.286 45.455 0.00 0.00 32.42 3.62
231 232 3.057734 CGATATAGGAAGCGTTGAACCC 58.942 50.000 0.00 0.00 0.00 4.11
232 233 3.243771 CGATATAGGAAGCGTTGAACCCT 60.244 47.826 0.00 0.00 0.00 4.34
233 234 4.704965 GATATAGGAAGCGTTGAACCCTT 58.295 43.478 0.00 0.00 0.00 3.95
234 235 2.943036 TAGGAAGCGTTGAACCCTTT 57.057 45.000 0.00 0.00 0.00 3.11
235 236 1.318576 AGGAAGCGTTGAACCCTTTG 58.681 50.000 0.00 0.00 0.00 2.77
236 237 0.318699 GGAAGCGTTGAACCCTTTGC 60.319 55.000 0.00 0.00 0.00 3.68
237 238 0.318699 GAAGCGTTGAACCCTTTGCC 60.319 55.000 0.00 0.00 0.00 4.52
238 239 0.755327 AAGCGTTGAACCCTTTGCCT 60.755 50.000 0.00 0.00 0.00 4.75
239 240 1.172812 AGCGTTGAACCCTTTGCCTC 61.173 55.000 0.00 0.00 0.00 4.70
240 241 1.574428 CGTTGAACCCTTTGCCTCG 59.426 57.895 0.00 0.00 0.00 4.63
241 242 1.852067 CGTTGAACCCTTTGCCTCGG 61.852 60.000 0.00 0.00 0.00 4.63
242 243 1.228429 TTGAACCCTTTGCCTCGGG 60.228 57.895 0.00 0.00 46.26 5.14
253 254 3.598715 CCTCGGGCCGCGTGTATA 61.599 66.667 23.83 0.00 0.00 1.47
254 255 2.649034 CTCGGGCCGCGTGTATAT 59.351 61.111 23.83 0.00 0.00 0.86
255 256 1.588824 CCTCGGGCCGCGTGTATATA 61.589 60.000 23.83 0.00 0.00 0.86
256 257 0.454600 CTCGGGCCGCGTGTATATAT 59.545 55.000 23.83 0.00 0.00 0.86
257 258 0.889994 TCGGGCCGCGTGTATATATT 59.110 50.000 23.83 0.00 0.00 1.28
258 259 0.996462 CGGGCCGCGTGTATATATTG 59.004 55.000 15.42 0.00 0.00 1.90
259 260 1.365699 GGGCCGCGTGTATATATTGG 58.634 55.000 4.92 0.00 0.00 3.16
260 261 1.365699 GGCCGCGTGTATATATTGGG 58.634 55.000 4.92 0.00 0.00 4.12
261 262 0.725117 GCCGCGTGTATATATTGGGC 59.275 55.000 4.92 0.00 0.00 5.36
262 263 1.942127 GCCGCGTGTATATATTGGGCA 60.942 52.381 4.92 0.00 39.10 5.36
263 264 2.418692 CCGCGTGTATATATTGGGCAA 58.581 47.619 4.92 0.00 0.00 4.52
264 265 2.809119 CCGCGTGTATATATTGGGCAAA 59.191 45.455 4.92 0.00 0.00 3.68
265 266 3.251245 CCGCGTGTATATATTGGGCAAAA 59.749 43.478 4.92 0.00 0.00 2.44
266 267 4.463209 CGCGTGTATATATTGGGCAAAAG 58.537 43.478 0.00 0.00 0.00 2.27
267 268 4.226761 GCGTGTATATATTGGGCAAAAGC 58.773 43.478 0.00 0.00 0.00 3.51
268 269 4.794169 CGTGTATATATTGGGCAAAAGCC 58.206 43.478 0.00 0.00 0.00 4.35
269 270 4.518970 CGTGTATATATTGGGCAAAAGCCT 59.481 41.667 6.45 0.00 0.00 4.58
270 271 5.009610 CGTGTATATATTGGGCAAAAGCCTT 59.990 40.000 6.45 0.00 0.00 4.35
271 272 6.215845 GTGTATATATTGGGCAAAAGCCTTG 58.784 40.000 6.45 0.00 0.00 3.61
272 273 4.961438 ATATATTGGGCAAAAGCCTTGG 57.039 40.909 6.45 0.00 0.00 3.61
273 274 0.612744 TATTGGGCAAAAGCCTTGGC 59.387 50.000 12.75 12.75 43.30 4.52
274 275 1.417288 ATTGGGCAAAAGCCTTGGCA 61.417 50.000 20.09 5.42 45.48 4.92
275 276 1.417288 TTGGGCAAAAGCCTTGGCAT 61.417 50.000 20.09 0.00 45.48 4.40
276 277 0.543883 TGGGCAAAAGCCTTGGCATA 60.544 50.000 20.09 9.04 45.48 3.14
277 278 0.108186 GGGCAAAAGCCTTGGCATAC 60.108 55.000 20.09 4.10 45.48 2.39
278 279 0.607620 GGCAAAAGCCTTGGCATACA 59.392 50.000 14.54 0.00 43.47 2.29
279 280 1.001860 GGCAAAAGCCTTGGCATACAA 59.998 47.619 14.54 0.00 43.47 2.41
293 294 7.575414 TTGGCATACAAGTTACAAAGAAAGA 57.425 32.000 0.00 0.00 33.18 2.52
294 295 7.202016 TGGCATACAAGTTACAAAGAAAGAG 57.798 36.000 0.00 0.00 0.00 2.85
295 296 6.995686 TGGCATACAAGTTACAAAGAAAGAGA 59.004 34.615 0.00 0.00 0.00 3.10
296 297 7.665559 TGGCATACAAGTTACAAAGAAAGAGAT 59.334 33.333 0.00 0.00 0.00 2.75
297 298 8.178313 GGCATACAAGTTACAAAGAAAGAGATC 58.822 37.037 0.00 0.00 0.00 2.75
298 299 7.900352 GCATACAAGTTACAAAGAAAGAGATCG 59.100 37.037 0.00 0.00 0.00 3.69
299 300 9.140286 CATACAAGTTACAAAGAAAGAGATCGA 57.860 33.333 0.00 0.00 0.00 3.59
300 301 7.644986 ACAAGTTACAAAGAAAGAGATCGAG 57.355 36.000 0.00 0.00 0.00 4.04
301 302 7.434492 ACAAGTTACAAAGAAAGAGATCGAGA 58.566 34.615 0.00 0.00 0.00 4.04
302 303 7.596995 ACAAGTTACAAAGAAAGAGATCGAGAG 59.403 37.037 0.00 0.00 0.00 3.20
314 315 3.875865 TCGAGAGATCGACCAGGAA 57.124 52.632 0.00 0.00 37.20 3.36
315 316 1.669604 TCGAGAGATCGACCAGGAAG 58.330 55.000 0.00 0.00 37.20 3.46
316 317 0.665835 CGAGAGATCGACCAGGAAGG 59.334 60.000 0.00 0.00 45.67 3.46
317 318 4.334628 TCGAGAGATCGACCAGGAAGGT 62.335 54.545 0.00 0.00 46.13 3.50
325 326 2.911143 CCAGGAAGGTGATCGGGG 59.089 66.667 0.00 0.00 0.00 5.73
326 327 1.689233 CCAGGAAGGTGATCGGGGA 60.689 63.158 0.00 0.00 0.00 4.81
327 328 1.690219 CCAGGAAGGTGATCGGGGAG 61.690 65.000 0.00 0.00 0.00 4.30
328 329 0.687757 CAGGAAGGTGATCGGGGAGA 60.688 60.000 0.00 0.00 0.00 3.71
329 330 0.042731 AGGAAGGTGATCGGGGAGAA 59.957 55.000 0.00 0.00 0.00 2.87
330 331 0.466124 GGAAGGTGATCGGGGAGAAG 59.534 60.000 0.00 0.00 0.00 2.85
331 332 1.486211 GAAGGTGATCGGGGAGAAGA 58.514 55.000 0.00 0.00 0.00 2.87
332 333 1.831736 GAAGGTGATCGGGGAGAAGAA 59.168 52.381 0.00 0.00 0.00 2.52
333 334 1.490574 AGGTGATCGGGGAGAAGAAG 58.509 55.000 0.00 0.00 0.00 2.85
334 335 1.007238 AGGTGATCGGGGAGAAGAAGA 59.993 52.381 0.00 0.00 0.00 2.87
335 336 1.410882 GGTGATCGGGGAGAAGAAGAG 59.589 57.143 0.00 0.00 0.00 2.85
336 337 2.379972 GTGATCGGGGAGAAGAAGAGA 58.620 52.381 0.00 0.00 0.00 3.10
337 338 2.962421 GTGATCGGGGAGAAGAAGAGAT 59.038 50.000 0.00 0.00 0.00 2.75
338 339 4.145807 GTGATCGGGGAGAAGAAGAGATA 58.854 47.826 0.00 0.00 0.00 1.98
339 340 4.217550 GTGATCGGGGAGAAGAAGAGATAG 59.782 50.000 0.00 0.00 0.00 2.08
340 341 4.104897 TGATCGGGGAGAAGAAGAGATAGA 59.895 45.833 0.00 0.00 0.00 1.98
341 342 4.093472 TCGGGGAGAAGAAGAGATAGAG 57.907 50.000 0.00 0.00 0.00 2.43
342 343 3.717392 TCGGGGAGAAGAAGAGATAGAGA 59.283 47.826 0.00 0.00 0.00 3.10
343 344 4.352595 TCGGGGAGAAGAAGAGATAGAGAT 59.647 45.833 0.00 0.00 0.00 2.75
344 345 4.458989 CGGGGAGAAGAAGAGATAGAGATG 59.541 50.000 0.00 0.00 0.00 2.90
345 346 5.640147 GGGGAGAAGAAGAGATAGAGATGA 58.360 45.833 0.00 0.00 0.00 2.92
346 347 5.711976 GGGGAGAAGAAGAGATAGAGATGAG 59.288 48.000 0.00 0.00 0.00 2.90
347 348 5.711976 GGGAGAAGAAGAGATAGAGATGAGG 59.288 48.000 0.00 0.00 0.00 3.86
348 349 6.306987 GGAGAAGAAGAGATAGAGATGAGGT 58.693 44.000 0.00 0.00 0.00 3.85
349 350 7.458397 GGAGAAGAAGAGATAGAGATGAGGTA 58.542 42.308 0.00 0.00 0.00 3.08
350 351 7.390718 GGAGAAGAAGAGATAGAGATGAGGTAC 59.609 44.444 0.00 0.00 0.00 3.34
351 352 7.811282 AGAAGAAGAGATAGAGATGAGGTACA 58.189 38.462 0.00 0.00 0.00 2.90
352 353 8.448008 AGAAGAAGAGATAGAGATGAGGTACAT 58.552 37.037 0.00 0.00 42.47 2.29
353 354 8.408043 AAGAAGAGATAGAGATGAGGTACATG 57.592 38.462 0.00 0.00 39.56 3.21
354 355 7.754624 AGAAGAGATAGAGATGAGGTACATGA 58.245 38.462 0.00 0.00 39.56 3.07
355 356 8.393259 AGAAGAGATAGAGATGAGGTACATGAT 58.607 37.037 0.00 0.00 39.56 2.45
356 357 8.954834 AAGAGATAGAGATGAGGTACATGATT 57.045 34.615 0.00 0.00 39.56 2.57
357 358 8.954834 AGAGATAGAGATGAGGTACATGATTT 57.045 34.615 0.00 0.00 39.56 2.17
358 359 8.805175 AGAGATAGAGATGAGGTACATGATTTG 58.195 37.037 0.00 0.00 39.56 2.32
359 360 8.718158 AGATAGAGATGAGGTACATGATTTGA 57.282 34.615 0.00 0.00 39.56 2.69
360 361 9.152327 AGATAGAGATGAGGTACATGATTTGAA 57.848 33.333 0.00 0.00 39.56 2.69
361 362 9.770097 GATAGAGATGAGGTACATGATTTGAAA 57.230 33.333 0.00 0.00 39.56 2.69
362 363 7.856145 AGAGATGAGGTACATGATTTGAAAC 57.144 36.000 0.00 0.00 39.56 2.78
363 364 7.397221 AGAGATGAGGTACATGATTTGAAACA 58.603 34.615 0.00 0.00 39.56 2.83
364 365 7.551974 AGAGATGAGGTACATGATTTGAAACAG 59.448 37.037 0.00 0.00 39.56 3.16
365 366 7.397221 AGATGAGGTACATGATTTGAAACAGA 58.603 34.615 0.00 0.00 39.56 3.41
366 367 6.801539 TGAGGTACATGATTTGAAACAGAC 57.198 37.500 0.00 0.00 0.00 3.51
367 368 6.533730 TGAGGTACATGATTTGAAACAGACT 58.466 36.000 0.00 0.00 0.00 3.24
368 369 6.650807 TGAGGTACATGATTTGAAACAGACTC 59.349 38.462 0.00 0.00 0.00 3.36
369 370 5.940470 AGGTACATGATTTGAAACAGACTCC 59.060 40.000 0.00 0.00 0.00 3.85
370 371 5.940470 GGTACATGATTTGAAACAGACTCCT 59.060 40.000 0.00 0.00 0.00 3.69
371 372 7.038302 AGGTACATGATTTGAAACAGACTCCTA 60.038 37.037 0.00 0.00 0.00 2.94
372 373 7.606456 GGTACATGATTTGAAACAGACTCCTAA 59.394 37.037 0.00 0.00 0.00 2.69
373 374 7.440523 ACATGATTTGAAACAGACTCCTAAC 57.559 36.000 0.00 0.00 0.00 2.34
374 375 6.431234 ACATGATTTGAAACAGACTCCTAACC 59.569 38.462 0.00 0.00 0.00 2.85
375 376 5.313712 TGATTTGAAACAGACTCCTAACCC 58.686 41.667 0.00 0.00 0.00 4.11
376 377 5.073144 TGATTTGAAACAGACTCCTAACCCT 59.927 40.000 0.00 0.00 0.00 4.34
377 378 6.271391 TGATTTGAAACAGACTCCTAACCCTA 59.729 38.462 0.00 0.00 0.00 3.53
378 379 6.697641 TTTGAAACAGACTCCTAACCCTAT 57.302 37.500 0.00 0.00 0.00 2.57
379 380 7.801893 TTTGAAACAGACTCCTAACCCTATA 57.198 36.000 0.00 0.00 0.00 1.31
380 381 6.786967 TGAAACAGACTCCTAACCCTATAC 57.213 41.667 0.00 0.00 0.00 1.47
381 382 6.258354 TGAAACAGACTCCTAACCCTATACA 58.742 40.000 0.00 0.00 0.00 2.29
382 383 6.901300 TGAAACAGACTCCTAACCCTATACAT 59.099 38.462 0.00 0.00 0.00 2.29
383 384 6.980416 AACAGACTCCTAACCCTATACATC 57.020 41.667 0.00 0.00 0.00 3.06
384 385 6.282568 ACAGACTCCTAACCCTATACATCT 57.717 41.667 0.00 0.00 0.00 2.90
385 386 6.308566 ACAGACTCCTAACCCTATACATCTC 58.691 44.000 0.00 0.00 0.00 2.75
386 387 5.712917 CAGACTCCTAACCCTATACATCTCC 59.287 48.000 0.00 0.00 0.00 3.71
387 388 5.617851 AGACTCCTAACCCTATACATCTCCT 59.382 44.000 0.00 0.00 0.00 3.69
388 389 6.798560 AGACTCCTAACCCTATACATCTCCTA 59.201 42.308 0.00 0.00 0.00 2.94
389 390 7.466213 AGACTCCTAACCCTATACATCTCCTAT 59.534 40.741 0.00 0.00 0.00 2.57
390 391 8.712168 ACTCCTAACCCTATACATCTCCTATA 57.288 38.462 0.00 0.00 0.00 1.31
391 392 8.559175 ACTCCTAACCCTATACATCTCCTATAC 58.441 40.741 0.00 0.00 0.00 1.47
392 393 7.571919 TCCTAACCCTATACATCTCCTATACG 58.428 42.308 0.00 0.00 0.00 3.06
393 394 6.771749 CCTAACCCTATACATCTCCTATACGG 59.228 46.154 0.00 0.00 0.00 4.02
394 395 5.793034 ACCCTATACATCTCCTATACGGT 57.207 43.478 0.00 0.00 0.00 4.83
395 396 6.150034 ACCCTATACATCTCCTATACGGTT 57.850 41.667 0.00 0.00 0.00 4.44
396 397 7.276088 ACCCTATACATCTCCTATACGGTTA 57.724 40.000 0.00 0.00 0.00 2.85
397 398 7.880623 ACCCTATACATCTCCTATACGGTTAT 58.119 38.462 0.00 0.00 0.00 1.89
398 399 8.342270 ACCCTATACATCTCCTATACGGTTATT 58.658 37.037 0.00 0.00 0.00 1.40
399 400 8.848182 CCCTATACATCTCCTATACGGTTATTC 58.152 40.741 0.00 0.00 0.00 1.75
400 401 9.629878 CCTATACATCTCCTATACGGTTATTCT 57.370 37.037 0.00 0.00 0.00 2.40
404 405 8.701908 ACATCTCCTATACGGTTATTCTAACA 57.298 34.615 0.00 0.00 0.00 2.41
405 406 9.139734 ACATCTCCTATACGGTTATTCTAACAA 57.860 33.333 0.00 0.00 0.00 2.83
406 407 9.408069 CATCTCCTATACGGTTATTCTAACAAC 57.592 37.037 0.00 0.00 0.00 3.32
407 408 7.945134 TCTCCTATACGGTTATTCTAACAACC 58.055 38.462 0.00 0.00 40.72 3.77
408 409 7.560991 TCTCCTATACGGTTATTCTAACAACCA 59.439 37.037 3.96 0.00 43.70 3.67
409 410 7.491682 TCCTATACGGTTATTCTAACAACCAC 58.508 38.462 3.96 0.00 43.70 4.16
410 411 7.123997 TCCTATACGGTTATTCTAACAACCACA 59.876 37.037 3.96 0.00 43.70 4.17
411 412 7.765360 CCTATACGGTTATTCTAACAACCACAA 59.235 37.037 3.96 0.00 43.70 3.33
412 413 5.934935 ACGGTTATTCTAACAACCACAAG 57.065 39.130 3.96 0.00 43.70 3.16
413 414 4.214758 ACGGTTATTCTAACAACCACAAGC 59.785 41.667 3.96 0.00 43.70 4.01
414 415 4.214545 CGGTTATTCTAACAACCACAAGCA 59.785 41.667 3.96 0.00 43.70 3.91
415 416 5.458015 GGTTATTCTAACAACCACAAGCAC 58.542 41.667 0.00 0.00 43.13 4.40
416 417 5.458015 GTTATTCTAACAACCACAAGCACC 58.542 41.667 0.00 0.00 0.00 5.01
417 418 3.290948 TTCTAACAACCACAAGCACCT 57.709 42.857 0.00 0.00 0.00 4.00
418 419 2.846193 TCTAACAACCACAAGCACCTC 58.154 47.619 0.00 0.00 0.00 3.85
419 420 2.438021 TCTAACAACCACAAGCACCTCT 59.562 45.455 0.00 0.00 0.00 3.69
420 421 2.143876 AACAACCACAAGCACCTCTT 57.856 45.000 0.00 0.00 34.78 2.85
421 422 2.143876 ACAACCACAAGCACCTCTTT 57.856 45.000 0.00 0.00 31.27 2.52
422 423 2.024414 ACAACCACAAGCACCTCTTTC 58.976 47.619 0.00 0.00 31.27 2.62
423 424 1.338020 CAACCACAAGCACCTCTTTCC 59.662 52.381 0.00 0.00 31.27 3.13
424 425 0.846693 ACCACAAGCACCTCTTTCCT 59.153 50.000 0.00 0.00 31.27 3.36
425 426 1.215423 ACCACAAGCACCTCTTTCCTT 59.785 47.619 0.00 0.00 31.27 3.36
426 427 2.441750 ACCACAAGCACCTCTTTCCTTA 59.558 45.455 0.00 0.00 31.27 2.69
427 428 3.074538 ACCACAAGCACCTCTTTCCTTAT 59.925 43.478 0.00 0.00 31.27 1.73
428 429 4.082125 CCACAAGCACCTCTTTCCTTATT 58.918 43.478 0.00 0.00 31.27 1.40
429 430 5.222048 ACCACAAGCACCTCTTTCCTTATTA 60.222 40.000 0.00 0.00 31.27 0.98
430 431 5.710099 CCACAAGCACCTCTTTCCTTATTAA 59.290 40.000 0.00 0.00 31.27 1.40
431 432 6.349363 CCACAAGCACCTCTTTCCTTATTAAC 60.349 42.308 0.00 0.00 31.27 2.01
432 433 6.431234 CACAAGCACCTCTTTCCTTATTAACT 59.569 38.462 0.00 0.00 31.27 2.24
433 434 7.004691 ACAAGCACCTCTTTCCTTATTAACTT 58.995 34.615 0.00 0.00 31.27 2.66
434 435 7.175119 ACAAGCACCTCTTTCCTTATTAACTTC 59.825 37.037 0.00 0.00 31.27 3.01
435 436 6.779860 AGCACCTCTTTCCTTATTAACTTCA 58.220 36.000 0.00 0.00 0.00 3.02
436 437 7.406104 AGCACCTCTTTCCTTATTAACTTCAT 58.594 34.615 0.00 0.00 0.00 2.57
437 438 7.337942 AGCACCTCTTTCCTTATTAACTTCATG 59.662 37.037 0.00 0.00 0.00 3.07
438 439 7.475840 CACCTCTTTCCTTATTAACTTCATGC 58.524 38.462 0.00 0.00 0.00 4.06
439 440 6.603599 ACCTCTTTCCTTATTAACTTCATGCC 59.396 38.462 0.00 0.00 0.00 4.40
440 441 6.603201 CCTCTTTCCTTATTAACTTCATGCCA 59.397 38.462 0.00 0.00 0.00 4.92
441 442 7.391148 TCTTTCCTTATTAACTTCATGCCAC 57.609 36.000 0.00 0.00 0.00 5.01
442 443 6.945435 TCTTTCCTTATTAACTTCATGCCACA 59.055 34.615 0.00 0.00 0.00 4.17
443 444 7.615365 TCTTTCCTTATTAACTTCATGCCACAT 59.385 33.333 0.00 0.00 0.00 3.21
444 445 8.815565 TTTCCTTATTAACTTCATGCCACATA 57.184 30.769 0.00 0.00 0.00 2.29
445 446 8.815565 TTCCTTATTAACTTCATGCCACATAA 57.184 30.769 0.00 0.00 0.00 1.90
446 447 8.450578 TCCTTATTAACTTCATGCCACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
447 448 7.013274 TCCTTATTAACTTCATGCCACATAAGC 59.987 37.037 0.00 0.00 0.00 3.09
448 449 7.201812 CCTTATTAACTTCATGCCACATAAGCA 60.202 37.037 0.00 0.00 45.94 3.91
457 458 4.694760 TGCCACATAAGCATCTATGTCT 57.305 40.909 3.82 0.00 39.89 3.41
458 459 5.039920 TGCCACATAAGCATCTATGTCTT 57.960 39.130 3.82 5.43 39.89 3.01
459 460 4.818005 TGCCACATAAGCATCTATGTCTTG 59.182 41.667 3.82 0.00 39.89 3.02
460 461 4.214971 GCCACATAAGCATCTATGTCTTGG 59.785 45.833 3.82 4.57 39.89 3.61
461 462 4.758674 CCACATAAGCATCTATGTCTTGGG 59.241 45.833 3.82 0.48 39.89 4.12
462 463 4.758674 CACATAAGCATCTATGTCTTGGGG 59.241 45.833 3.82 1.86 39.89 4.96
463 464 4.413520 ACATAAGCATCTATGTCTTGGGGT 59.586 41.667 8.80 3.87 37.90 4.95
464 465 3.287867 AAGCATCTATGTCTTGGGGTG 57.712 47.619 0.00 0.00 0.00 4.61
465 466 1.133976 AGCATCTATGTCTTGGGGTGC 60.134 52.381 0.00 0.00 0.00 5.01
466 467 1.586422 CATCTATGTCTTGGGGTGCG 58.414 55.000 0.00 0.00 0.00 5.34
467 468 1.134401 CATCTATGTCTTGGGGTGCGT 60.134 52.381 0.00 0.00 0.00 5.24
468 469 0.981183 TCTATGTCTTGGGGTGCGTT 59.019 50.000 0.00 0.00 0.00 4.84
469 470 2.181125 TCTATGTCTTGGGGTGCGTTA 58.819 47.619 0.00 0.00 0.00 3.18
470 471 2.769663 TCTATGTCTTGGGGTGCGTTAT 59.230 45.455 0.00 0.00 0.00 1.89
471 472 3.962063 TCTATGTCTTGGGGTGCGTTATA 59.038 43.478 0.00 0.00 0.00 0.98
472 473 3.857157 ATGTCTTGGGGTGCGTTATAT 57.143 42.857 0.00 0.00 0.00 0.86
473 474 3.637911 TGTCTTGGGGTGCGTTATATT 57.362 42.857 0.00 0.00 0.00 1.28
474 475 4.757019 TGTCTTGGGGTGCGTTATATTA 57.243 40.909 0.00 0.00 0.00 0.98
475 476 4.444536 TGTCTTGGGGTGCGTTATATTAC 58.555 43.478 0.00 0.00 0.00 1.89
476 477 4.162698 TGTCTTGGGGTGCGTTATATTACT 59.837 41.667 0.00 0.00 0.00 2.24
477 478 5.363292 TGTCTTGGGGTGCGTTATATTACTA 59.637 40.000 0.00 0.00 0.00 1.82
478 479 5.693555 GTCTTGGGGTGCGTTATATTACTAC 59.306 44.000 0.00 0.00 0.00 2.73
479 480 4.605640 TGGGGTGCGTTATATTACTACC 57.394 45.455 6.61 6.61 0.00 3.18
480 481 4.225573 TGGGGTGCGTTATATTACTACCT 58.774 43.478 12.12 0.00 0.00 3.08
481 482 5.392995 TGGGGTGCGTTATATTACTACCTA 58.607 41.667 12.12 3.59 0.00 3.08
482 483 5.837979 TGGGGTGCGTTATATTACTACCTAA 59.162 40.000 12.12 2.81 0.00 2.69
483 484 6.015180 TGGGGTGCGTTATATTACTACCTAAG 60.015 42.308 12.12 0.00 0.00 2.18
484 485 6.015095 GGGGTGCGTTATATTACTACCTAAGT 60.015 42.308 12.12 0.00 42.62 2.24
485 486 7.436933 GGGTGCGTTATATTACTACCTAAGTT 58.563 38.462 12.12 0.00 39.80 2.66
486 487 8.576442 GGGTGCGTTATATTACTACCTAAGTTA 58.424 37.037 12.12 0.00 39.80 2.24
487 488 9.399403 GGTGCGTTATATTACTACCTAAGTTAC 57.601 37.037 7.50 0.00 39.80 2.50
499 500 8.959705 ACTACCTAAGTTACTTTCATTATGGC 57.040 34.615 1.94 0.00 33.35 4.40
500 501 8.769359 ACTACCTAAGTTACTTTCATTATGGCT 58.231 33.333 1.94 0.00 33.35 4.75
503 504 8.769359 ACCTAAGTTACTTTCATTATGGCTAGT 58.231 33.333 1.94 0.00 0.00 2.57
504 505 9.262358 CCTAAGTTACTTTCATTATGGCTAGTC 57.738 37.037 1.94 0.00 0.00 2.59
515 516 8.777865 TCATTATGGCTAGTCTTATGTAATGC 57.222 34.615 0.00 0.00 31.66 3.56
524 525 8.439286 GCTAGTCTTATGTAATGCTTGCTTATC 58.561 37.037 0.00 0.00 0.00 1.75
533 534 5.376854 AATGCTTGCTTATCTTTTCGTGT 57.623 34.783 0.00 0.00 0.00 4.49
582 3497 7.170998 GCAAGCGGTAGAGTACATTTTATATGT 59.829 37.037 0.00 0.00 36.13 2.29
806 3735 1.153449 CACGCTATTCGCCCTTCCA 60.153 57.895 0.00 0.00 43.23 3.53
811 3740 0.249489 CTATTCGCCCTTCCACCTCG 60.249 60.000 0.00 0.00 0.00 4.63
812 3741 0.974010 TATTCGCCCTTCCACCTCGT 60.974 55.000 0.00 0.00 0.00 4.18
819 3748 1.280998 CCCTTCCACCTCGTAATGGTT 59.719 52.381 0.00 0.00 37.27 3.67
919 3848 1.422402 TCCCATATTAAACTCGCCCCC 59.578 52.381 0.00 0.00 0.00 5.40
970 3899 2.440817 CCGCGACCCCCTTAATCCT 61.441 63.158 8.23 0.00 0.00 3.24
989 3918 2.846827 CCTTCTCCCAACCCTTATCTGT 59.153 50.000 0.00 0.00 0.00 3.41
1050 3979 0.320421 CGGTGTTCGTCAAGGTGGAT 60.320 55.000 0.00 0.00 0.00 3.41
1241 4170 0.815734 AACGACCAGGGTACGATCTG 59.184 55.000 14.27 3.44 0.00 2.90
1242 4171 0.323178 ACGACCAGGGTACGATCTGT 60.323 55.000 14.27 0.00 0.00 3.41
1248 4177 2.379972 CAGGGTACGATCTGTTCTCCT 58.620 52.381 0.00 0.00 0.00 3.69
1249 4178 2.099921 CAGGGTACGATCTGTTCTCCTG 59.900 54.545 0.00 13.31 33.46 3.86
1250 4179 1.202428 GGGTACGATCTGTTCTCCTGC 60.202 57.143 0.00 0.00 0.00 4.85
1251 4180 1.751924 GGTACGATCTGTTCTCCTGCT 59.248 52.381 0.00 0.00 0.00 4.24
1252 4181 2.166664 GGTACGATCTGTTCTCCTGCTT 59.833 50.000 0.00 0.00 0.00 3.91
1253 4182 2.663826 ACGATCTGTTCTCCTGCTTC 57.336 50.000 0.00 0.00 0.00 3.86
1254 4183 2.175202 ACGATCTGTTCTCCTGCTTCT 58.825 47.619 0.00 0.00 0.00 2.85
1255 4184 2.165437 ACGATCTGTTCTCCTGCTTCTC 59.835 50.000 0.00 0.00 0.00 2.87
1256 4185 2.426738 CGATCTGTTCTCCTGCTTCTCT 59.573 50.000 0.00 0.00 0.00 3.10
1257 4186 3.734597 CGATCTGTTCTCCTGCTTCTCTG 60.735 52.174 0.00 0.00 0.00 3.35
1258 4187 2.603021 TCTGTTCTCCTGCTTCTCTGT 58.397 47.619 0.00 0.00 0.00 3.41
1259 4188 2.560542 TCTGTTCTCCTGCTTCTCTGTC 59.439 50.000 0.00 0.00 0.00 3.51
1260 4189 1.270826 TGTTCTCCTGCTTCTCTGTCG 59.729 52.381 0.00 0.00 0.00 4.35
1261 4190 1.271102 GTTCTCCTGCTTCTCTGTCGT 59.729 52.381 0.00 0.00 0.00 4.34
1262 4191 2.488545 GTTCTCCTGCTTCTCTGTCGTA 59.511 50.000 0.00 0.00 0.00 3.43
1263 4192 2.791655 TCTCCTGCTTCTCTGTCGTAA 58.208 47.619 0.00 0.00 0.00 3.18
1264 4193 3.357203 TCTCCTGCTTCTCTGTCGTAAT 58.643 45.455 0.00 0.00 0.00 1.89
1265 4194 3.378742 TCTCCTGCTTCTCTGTCGTAATC 59.621 47.826 0.00 0.00 0.00 1.75
1266 4195 3.357203 TCCTGCTTCTCTGTCGTAATCT 58.643 45.455 0.00 0.00 0.00 2.40
1267 4196 3.129462 TCCTGCTTCTCTGTCGTAATCTG 59.871 47.826 0.00 0.00 0.00 2.90
1268 4197 2.857152 CTGCTTCTCTGTCGTAATCTGC 59.143 50.000 0.00 0.00 0.00 4.26
1269 4198 2.197577 GCTTCTCTGTCGTAATCTGCC 58.802 52.381 0.00 0.00 0.00 4.85
1270 4199 2.815478 CTTCTCTGTCGTAATCTGCCC 58.185 52.381 0.00 0.00 0.00 5.36
1271 4200 2.145397 TCTCTGTCGTAATCTGCCCT 57.855 50.000 0.00 0.00 0.00 5.19
1272 4201 2.025155 TCTCTGTCGTAATCTGCCCTC 58.975 52.381 0.00 0.00 0.00 4.30
1273 4202 2.028130 CTCTGTCGTAATCTGCCCTCT 58.972 52.381 0.00 0.00 0.00 3.69
1274 4203 2.428890 CTCTGTCGTAATCTGCCCTCTT 59.571 50.000 0.00 0.00 0.00 2.85
1310 4240 2.926362 CGAGTACTCGTGACCGATAG 57.074 55.000 32.24 5.03 46.99 2.08
1311 4241 2.467838 CGAGTACTCGTGACCGATAGA 58.532 52.381 32.24 0.00 46.99 1.98
1312 4242 2.218302 CGAGTACTCGTGACCGATAGAC 59.782 54.545 32.24 0.00 46.99 2.59
1414 4462 7.414222 TTTATCTGTTACTTATCACGGAGGT 57.586 36.000 0.00 0.00 31.74 3.85
1416 4464 3.698040 TCTGTTACTTATCACGGAGGTCC 59.302 47.826 0.00 0.00 0.00 4.46
1440 4488 3.944650 TGTATGCGGCAGAACACATTTAT 59.055 39.130 14.74 0.00 0.00 1.40
1442 4490 2.158559 TGCGGCAGAACACATTTATGT 58.841 42.857 0.00 0.00 42.84 2.29
1452 4500 8.745837 GCAGAACACATTTATGTTGTATTATGC 58.254 33.333 0.00 0.00 42.89 3.14
1539 4604 6.616947 CAAGTGAACTGGAAAGTGTGTTTAA 58.383 36.000 0.00 0.00 0.00 1.52
1584 4649 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
1601 4714 4.080969 AGAGCGTTTAGACACTTACTCG 57.919 45.455 0.00 0.00 0.00 4.18
1645 4758 5.349270 GTGTGTATATTTGTGGAAGTGCGTA 59.651 40.000 0.00 0.00 0.00 4.42
1654 4767 3.064207 GTGGAAGTGCGTATGAAACAGA 58.936 45.455 0.00 0.00 0.00 3.41
1668 4781 0.681175 AACAGAAATGCCCTGGTTGC 59.319 50.000 0.00 0.00 36.03 4.17
1674 4787 0.763986 AATGCCCTGGTTGCCTGTTT 60.764 50.000 0.00 0.00 0.00 2.83
1675 4788 0.763986 ATGCCCTGGTTGCCTGTTTT 60.764 50.000 0.00 0.00 0.00 2.43
1676 4789 0.980231 TGCCCTGGTTGCCTGTTTTT 60.980 50.000 0.00 0.00 0.00 1.94
1923 5072 9.409312 TGTAAAATTGATTCACACTATGCTTTG 57.591 29.630 0.00 0.00 0.00 2.77
1969 5118 4.081752 TGCATCATGTTTTCCCGCTTATTT 60.082 37.500 0.00 0.00 0.00 1.40
2055 5204 8.723942 AATCTACTTTGTATGCTTAGGAACAG 57.276 34.615 0.00 0.00 0.00 3.16
2068 5219 6.094881 TGCTTAGGAACAGGAAATTAAATCCG 59.905 38.462 5.32 4.02 42.03 4.18
2115 5269 6.524586 GCTTTACTGAAATTTGTTGATCCTCG 59.475 38.462 0.00 0.00 0.00 4.63
2129 5283 0.676782 TCCTCGACTCATGTGCTCGA 60.677 55.000 16.08 16.08 0.00 4.04
2187 5341 6.744112 TGACTGGTTTGATAAACATTGGTTC 58.256 36.000 6.74 0.00 43.15 3.62
2192 5346 7.560368 TGGTTTGATAAACATTGGTTCACTTT 58.440 30.769 6.74 0.00 43.15 2.66
2433 5587 8.984482 GTGAAAATCACATCGATCTTAATCAG 57.016 34.615 0.00 0.00 46.22 2.90
2434 5588 8.820933 GTGAAAATCACATCGATCTTAATCAGA 58.179 33.333 0.00 0.00 46.22 3.27
2435 5589 9.382275 TGAAAATCACATCGATCTTAATCAGAA 57.618 29.630 0.00 0.00 34.16 3.02
2528 5682 8.634335 TTCTGAGTTCATATTGGAATTGTTCA 57.366 30.769 0.00 0.00 0.00 3.18
2888 6043 7.519002 ACATGTTTTCTACGAACTATCAAAGC 58.481 34.615 0.00 0.00 0.00 3.51
2929 6084 5.505819 GCTCACAAACTTGAAAACTCCCTAC 60.506 44.000 0.00 0.00 0.00 3.18
3035 6206 3.731089 CATGGGTTTGTTGCAAATGAGT 58.269 40.909 0.00 0.00 0.00 3.41
3068 6239 5.048991 GGTGGGTCTTTATGCAAATATACCG 60.049 44.000 0.00 0.00 0.00 4.02
3123 6294 2.500229 TCGAATGGTCAAAAGTGTCCC 58.500 47.619 0.00 0.00 32.46 4.46
3150 6323 2.484062 CCATCATCACCAAGGGCGC 61.484 63.158 0.00 0.00 0.00 6.53
3231 6404 0.786435 AGGGCCAGTTCTTTTGGGAT 59.214 50.000 6.18 0.00 36.19 3.85
3265 6438 3.416156 AGCTGCCTCTTTCCAGTTTAAG 58.584 45.455 0.00 0.00 0.00 1.85
3272 6445 8.472007 TGCCTCTTTCCAGTTTAAGAAATAAA 57.528 30.769 0.00 0.00 31.89 1.40
3350 6539 2.988010 ACAAGAGATGCGGCTTATGA 57.012 45.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.846712 GAGGGGCAACTTCCTGCTCT 61.847 60.000 0.00 0.00 42.82 4.09
1 2 1.377856 GAGGGGCAACTTCCTGCTC 60.378 63.158 0.00 0.00 42.48 4.26
2 3 2.759795 GAGGGGCAACTTCCTGCT 59.240 61.111 0.00 0.00 42.25 4.24
3 4 2.180159 TACGAGGGGCAACTTCCTGC 62.180 60.000 0.00 0.00 41.85 4.85
4 5 0.323629 TTACGAGGGGCAACTTCCTG 59.676 55.000 0.00 0.00 32.74 3.86
5 6 0.613777 CTTACGAGGGGCAACTTCCT 59.386 55.000 0.00 0.00 35.82 3.36
6 7 1.025113 GCTTACGAGGGGCAACTTCC 61.025 60.000 0.00 0.00 0.00 3.46
7 8 0.036294 AGCTTACGAGGGGCAACTTC 60.036 55.000 0.00 0.00 0.00 3.01
8 9 0.400594 AAGCTTACGAGGGGCAACTT 59.599 50.000 0.00 0.00 0.00 2.66
9 10 0.036294 GAAGCTTACGAGGGGCAACT 60.036 55.000 0.00 0.00 0.00 3.16
10 11 0.036294 AGAAGCTTACGAGGGGCAAC 60.036 55.000 0.00 0.00 0.00 4.17
11 12 0.249398 GAGAAGCTTACGAGGGGCAA 59.751 55.000 0.00 0.00 0.00 4.52
12 13 0.614979 AGAGAAGCTTACGAGGGGCA 60.615 55.000 0.00 0.00 0.00 5.36
13 14 0.537653 AAGAGAAGCTTACGAGGGGC 59.462 55.000 0.00 0.00 34.31 5.80
14 15 1.550976 ACAAGAGAAGCTTACGAGGGG 59.449 52.381 0.00 0.00 34.31 4.79
15 16 2.231478 TCACAAGAGAAGCTTACGAGGG 59.769 50.000 0.00 0.00 34.31 4.30
16 17 3.577649 TCACAAGAGAAGCTTACGAGG 57.422 47.619 0.00 0.00 34.31 4.63
17 18 3.862267 CCATCACAAGAGAAGCTTACGAG 59.138 47.826 0.00 0.00 34.31 4.18
18 19 3.849911 CCATCACAAGAGAAGCTTACGA 58.150 45.455 0.00 0.00 34.31 3.43
19 20 2.349886 GCCATCACAAGAGAAGCTTACG 59.650 50.000 0.00 0.00 34.31 3.18
20 21 2.349886 CGCCATCACAAGAGAAGCTTAC 59.650 50.000 0.00 0.00 34.31 2.34
21 22 2.233676 TCGCCATCACAAGAGAAGCTTA 59.766 45.455 0.00 0.00 34.31 3.09
22 23 1.002430 TCGCCATCACAAGAGAAGCTT 59.998 47.619 0.00 0.00 37.29 3.74
23 24 0.610174 TCGCCATCACAAGAGAAGCT 59.390 50.000 0.00 0.00 0.00 3.74
24 25 1.596727 GATCGCCATCACAAGAGAAGC 59.403 52.381 0.00 0.00 0.00 3.86
25 26 2.208431 GGATCGCCATCACAAGAGAAG 58.792 52.381 0.00 0.00 0.00 2.85
26 27 1.471501 CGGATCGCCATCACAAGAGAA 60.472 52.381 0.00 0.00 0.00 2.87
27 28 0.103026 CGGATCGCCATCACAAGAGA 59.897 55.000 0.00 0.00 0.00 3.10
28 29 0.103026 TCGGATCGCCATCACAAGAG 59.897 55.000 0.00 0.00 0.00 2.85
29 30 0.103026 CTCGGATCGCCATCACAAGA 59.897 55.000 0.00 0.00 0.00 3.02
30 31 0.877649 CCTCGGATCGCCATCACAAG 60.878 60.000 0.00 0.00 0.00 3.16
31 32 1.143838 CCTCGGATCGCCATCACAA 59.856 57.895 0.00 0.00 0.00 3.33
32 33 2.796193 CCCTCGGATCGCCATCACA 61.796 63.158 0.00 0.00 0.00 3.58
33 34 2.029666 CCCTCGGATCGCCATCAC 59.970 66.667 0.00 0.00 0.00 3.06
34 35 2.123468 TCCCTCGGATCGCCATCA 60.123 61.111 0.00 0.00 0.00 3.07
35 36 2.653702 CTCCCTCGGATCGCCATC 59.346 66.667 0.00 0.00 0.00 3.51
36 37 2.919856 CCTCCCTCGGATCGCCAT 60.920 66.667 0.00 0.00 0.00 4.40
37 38 4.458829 ACCTCCCTCGGATCGCCA 62.459 66.667 0.00 0.00 0.00 5.69
38 39 3.917760 CACCTCCCTCGGATCGCC 61.918 72.222 0.00 0.00 0.00 5.54
39 40 3.917760 CCACCTCCCTCGGATCGC 61.918 72.222 0.00 0.00 0.00 4.58
40 41 2.442272 ACCACCTCCCTCGGATCG 60.442 66.667 0.00 0.00 0.00 3.69
41 42 1.265454 AACACCACCTCCCTCGGATC 61.265 60.000 0.00 0.00 0.00 3.36
42 43 1.229529 AACACCACCTCCCTCGGAT 60.230 57.895 0.00 0.00 0.00 4.18
43 44 2.203182 AACACCACCTCCCTCGGA 59.797 61.111 0.00 0.00 0.00 4.55
44 45 2.347490 CAACACCACCTCCCTCGG 59.653 66.667 0.00 0.00 0.00 4.63
45 46 2.347490 CCAACACCACCTCCCTCG 59.653 66.667 0.00 0.00 0.00 4.63
46 47 1.073199 CACCAACACCACCTCCCTC 59.927 63.158 0.00 0.00 0.00 4.30
47 48 2.460853 CCACCAACACCACCTCCCT 61.461 63.158 0.00 0.00 0.00 4.20
48 49 2.115266 CCACCAACACCACCTCCC 59.885 66.667 0.00 0.00 0.00 4.30
49 50 1.073199 CTCCACCAACACCACCTCC 59.927 63.158 0.00 0.00 0.00 4.30
50 51 1.073199 CCTCCACCAACACCACCTC 59.927 63.158 0.00 0.00 0.00 3.85
51 52 1.696314 ACCTCCACCAACACCACCT 60.696 57.895 0.00 0.00 0.00 4.00
52 53 1.528309 CACCTCCACCAACACCACC 60.528 63.158 0.00 0.00 0.00 4.61
53 54 1.528309 CCACCTCCACCAACACCAC 60.528 63.158 0.00 0.00 0.00 4.16
54 55 1.282653 TTCCACCTCCACCAACACCA 61.283 55.000 0.00 0.00 0.00 4.17
55 56 0.537371 CTTCCACCTCCACCAACACC 60.537 60.000 0.00 0.00 0.00 4.16
56 57 0.472471 TCTTCCACCTCCACCAACAC 59.528 55.000 0.00 0.00 0.00 3.32
57 58 1.073763 CATCTTCCACCTCCACCAACA 59.926 52.381 0.00 0.00 0.00 3.33
58 59 1.351017 TCATCTTCCACCTCCACCAAC 59.649 52.381 0.00 0.00 0.00 3.77
59 60 1.630369 CTCATCTTCCACCTCCACCAA 59.370 52.381 0.00 0.00 0.00 3.67
60 61 1.279496 CTCATCTTCCACCTCCACCA 58.721 55.000 0.00 0.00 0.00 4.17
61 62 0.543749 CCTCATCTTCCACCTCCACC 59.456 60.000 0.00 0.00 0.00 4.61
62 63 1.065854 CACCTCATCTTCCACCTCCAC 60.066 57.143 0.00 0.00 0.00 4.02
63 64 1.279496 CACCTCATCTTCCACCTCCA 58.721 55.000 0.00 0.00 0.00 3.86
64 65 0.543749 CCACCTCATCTTCCACCTCC 59.456 60.000 0.00 0.00 0.00 4.30
65 66 1.065854 CACCACCTCATCTTCCACCTC 60.066 57.143 0.00 0.00 0.00 3.85
66 67 0.987294 CACCACCTCATCTTCCACCT 59.013 55.000 0.00 0.00 0.00 4.00
67 68 0.035056 CCACCACCTCATCTTCCACC 60.035 60.000 0.00 0.00 0.00 4.61
68 69 0.693049 ACCACCACCTCATCTTCCAC 59.307 55.000 0.00 0.00 0.00 4.02
69 70 0.692476 CACCACCACCTCATCTTCCA 59.308 55.000 0.00 0.00 0.00 3.53
70 71 0.984230 TCACCACCACCTCATCTTCC 59.016 55.000 0.00 0.00 0.00 3.46
71 72 1.677217 GCTCACCACCACCTCATCTTC 60.677 57.143 0.00 0.00 0.00 2.87
72 73 0.326264 GCTCACCACCACCTCATCTT 59.674 55.000 0.00 0.00 0.00 2.40
73 74 1.892819 CGCTCACCACCACCTCATCT 61.893 60.000 0.00 0.00 0.00 2.90
74 75 1.448540 CGCTCACCACCACCTCATC 60.449 63.158 0.00 0.00 0.00 2.92
75 76 2.665000 CGCTCACCACCACCTCAT 59.335 61.111 0.00 0.00 0.00 2.90
76 77 4.314440 GCGCTCACCACCACCTCA 62.314 66.667 0.00 0.00 0.00 3.86
77 78 4.314440 TGCGCTCACCACCACCTC 62.314 66.667 9.73 0.00 0.00 3.85
78 79 4.626081 GTGCGCTCACCACCACCT 62.626 66.667 9.73 0.00 37.24 4.00
94 95 4.284550 ACGCCAAGCACCATGGGT 62.285 61.111 18.09 0.00 38.44 4.51
95 96 3.443045 GACGCCAAGCACCATGGG 61.443 66.667 18.09 6.26 38.44 4.00
96 97 2.048023 ATGACGCCAAGCACCATGG 61.048 57.895 11.19 11.19 41.08 3.66
97 98 1.138036 CATGACGCCAAGCACCATG 59.862 57.895 0.00 0.00 33.99 3.66
98 99 2.048023 CCATGACGCCAAGCACCAT 61.048 57.895 0.00 0.00 0.00 3.55
99 100 2.672651 CCATGACGCCAAGCACCA 60.673 61.111 0.00 0.00 0.00 4.17
100 101 4.120331 GCCATGACGCCAAGCACC 62.120 66.667 0.00 0.00 0.00 5.01
101 102 3.332493 CTGCCATGACGCCAAGCAC 62.332 63.158 0.00 0.00 33.72 4.40
102 103 3.057548 CTGCCATGACGCCAAGCA 61.058 61.111 0.00 0.21 35.31 3.91
103 104 4.487412 GCTGCCATGACGCCAAGC 62.487 66.667 0.00 0.00 0.00 4.01
104 105 4.170062 CGCTGCCATGACGCCAAG 62.170 66.667 0.00 0.00 0.00 3.61
121 122 0.884704 ATATCATGTTCACCGCCGCC 60.885 55.000 0.00 0.00 0.00 6.13
122 123 0.944386 AATATCATGTTCACCGCCGC 59.056 50.000 0.00 0.00 0.00 6.53
123 124 2.209273 TCAATATCATGTTCACCGCCG 58.791 47.619 0.00 0.00 0.00 6.46
124 125 3.120546 CGATCAATATCATGTTCACCGCC 60.121 47.826 0.00 0.00 31.93 6.13
125 126 3.665323 GCGATCAATATCATGTTCACCGC 60.665 47.826 0.00 0.00 31.93 5.68
126 127 3.422214 CGCGATCAATATCATGTTCACCG 60.422 47.826 0.00 0.00 31.93 4.94
127 128 3.120546 CCGCGATCAATATCATGTTCACC 60.121 47.826 8.23 0.00 31.93 4.02
128 129 3.740832 TCCGCGATCAATATCATGTTCAC 59.259 43.478 8.23 0.00 31.93 3.18
129 130 3.988819 TCCGCGATCAATATCATGTTCA 58.011 40.909 8.23 0.00 31.93 3.18
130 131 3.369147 CCTCCGCGATCAATATCATGTTC 59.631 47.826 8.23 0.00 31.93 3.18
131 132 3.244215 ACCTCCGCGATCAATATCATGTT 60.244 43.478 8.23 0.00 31.93 2.71
132 133 2.300152 ACCTCCGCGATCAATATCATGT 59.700 45.455 8.23 0.00 31.93 3.21
133 134 2.964740 ACCTCCGCGATCAATATCATG 58.035 47.619 8.23 0.00 31.93 3.07
134 135 3.429547 GCTACCTCCGCGATCAATATCAT 60.430 47.826 8.23 0.00 31.93 2.45
135 136 2.094700 GCTACCTCCGCGATCAATATCA 60.095 50.000 8.23 0.00 31.93 2.15
136 137 2.164624 AGCTACCTCCGCGATCAATATC 59.835 50.000 8.23 0.00 0.00 1.63
137 138 2.171840 AGCTACCTCCGCGATCAATAT 58.828 47.619 8.23 0.00 0.00 1.28
138 139 1.617322 AGCTACCTCCGCGATCAATA 58.383 50.000 8.23 0.00 0.00 1.90
139 140 1.542030 CTAGCTACCTCCGCGATCAAT 59.458 52.381 8.23 0.00 0.00 2.57
140 141 0.952280 CTAGCTACCTCCGCGATCAA 59.048 55.000 8.23 0.00 0.00 2.57
141 142 0.889638 CCTAGCTACCTCCGCGATCA 60.890 60.000 8.23 0.00 0.00 2.92
142 143 0.890090 ACCTAGCTACCTCCGCGATC 60.890 60.000 8.23 0.00 0.00 3.69
143 144 1.150992 ACCTAGCTACCTCCGCGAT 59.849 57.895 8.23 0.00 0.00 4.58
144 145 1.822613 CACCTAGCTACCTCCGCGA 60.823 63.158 8.23 0.00 0.00 5.87
145 146 2.722487 CACCTAGCTACCTCCGCG 59.278 66.667 0.00 0.00 0.00 6.46
146 147 1.956629 TTGCACCTAGCTACCTCCGC 61.957 60.000 0.00 0.00 45.94 5.54
147 148 0.753262 ATTGCACCTAGCTACCTCCG 59.247 55.000 0.00 0.00 45.94 4.63
148 149 2.036604 GAGATTGCACCTAGCTACCTCC 59.963 54.545 0.00 0.00 45.94 4.30
149 150 2.962421 AGAGATTGCACCTAGCTACCTC 59.038 50.000 0.00 0.00 45.94 3.85
150 151 3.039252 AGAGATTGCACCTAGCTACCT 57.961 47.619 0.00 0.00 45.94 3.08
151 152 3.828875 AAGAGATTGCACCTAGCTACC 57.171 47.619 0.00 0.00 45.94 3.18
152 153 3.799420 CGAAAGAGATTGCACCTAGCTAC 59.201 47.826 0.00 0.00 45.94 3.58
153 154 3.699538 TCGAAAGAGATTGCACCTAGCTA 59.300 43.478 0.00 0.00 38.99 3.32
154 155 2.497675 TCGAAAGAGATTGCACCTAGCT 59.502 45.455 0.00 0.00 38.99 3.32
155 156 2.893637 TCGAAAGAGATTGCACCTAGC 58.106 47.619 0.00 0.00 38.78 3.42
169 170 4.987912 GCCTCTTCCTCATTAGATCGAAAG 59.012 45.833 0.00 0.00 0.00 2.62
170 171 4.651503 AGCCTCTTCCTCATTAGATCGAAA 59.348 41.667 0.00 0.00 0.00 3.46
171 172 4.219115 AGCCTCTTCCTCATTAGATCGAA 58.781 43.478 0.00 0.00 0.00 3.71
172 173 3.823873 GAGCCTCTTCCTCATTAGATCGA 59.176 47.826 0.00 0.00 0.00 3.59
173 174 3.826157 AGAGCCTCTTCCTCATTAGATCG 59.174 47.826 0.00 0.00 0.00 3.69
174 175 4.588528 ACAGAGCCTCTTCCTCATTAGATC 59.411 45.833 0.00 0.00 0.00 2.75
175 176 4.555689 ACAGAGCCTCTTCCTCATTAGAT 58.444 43.478 0.00 0.00 0.00 1.98
176 177 3.987745 ACAGAGCCTCTTCCTCATTAGA 58.012 45.455 0.00 0.00 0.00 2.10
177 178 4.751767 AACAGAGCCTCTTCCTCATTAG 57.248 45.455 0.00 0.00 0.00 1.73
178 179 4.406003 GGTAACAGAGCCTCTTCCTCATTA 59.594 45.833 0.00 0.00 0.00 1.90
179 180 3.198853 GGTAACAGAGCCTCTTCCTCATT 59.801 47.826 0.00 0.00 0.00 2.57
180 181 2.769095 GGTAACAGAGCCTCTTCCTCAT 59.231 50.000 0.00 0.00 0.00 2.90
181 182 2.180276 GGTAACAGAGCCTCTTCCTCA 58.820 52.381 0.00 0.00 0.00 3.86
182 183 2.180276 TGGTAACAGAGCCTCTTCCTC 58.820 52.381 0.00 0.00 46.17 3.71
183 184 2.327325 TGGTAACAGAGCCTCTTCCT 57.673 50.000 0.00 0.00 46.17 3.36
196 197 7.307219 GCTTCCTATATCGTTTCACATGGTAAC 60.307 40.741 0.00 0.00 0.00 2.50
197 198 6.704493 GCTTCCTATATCGTTTCACATGGTAA 59.296 38.462 0.00 0.00 0.00 2.85
198 199 6.220930 GCTTCCTATATCGTTTCACATGGTA 58.779 40.000 0.00 0.00 0.00 3.25
199 200 5.057149 GCTTCCTATATCGTTTCACATGGT 58.943 41.667 0.00 0.00 0.00 3.55
200 201 4.150627 CGCTTCCTATATCGTTTCACATGG 59.849 45.833 0.00 0.00 0.00 3.66
201 202 4.745125 ACGCTTCCTATATCGTTTCACATG 59.255 41.667 0.00 0.00 0.00 3.21
202 203 4.945246 ACGCTTCCTATATCGTTTCACAT 58.055 39.130 0.00 0.00 0.00 3.21
203 204 4.380841 ACGCTTCCTATATCGTTTCACA 57.619 40.909 0.00 0.00 0.00 3.58
204 205 4.802039 TCAACGCTTCCTATATCGTTTCAC 59.198 41.667 0.00 0.00 42.32 3.18
205 206 5.001237 TCAACGCTTCCTATATCGTTTCA 57.999 39.130 0.00 0.00 42.32 2.69
206 207 5.276726 GGTTCAACGCTTCCTATATCGTTTC 60.277 44.000 0.00 0.00 42.32 2.78
207 208 4.569564 GGTTCAACGCTTCCTATATCGTTT 59.430 41.667 0.00 0.00 42.32 3.60
208 209 4.117685 GGTTCAACGCTTCCTATATCGTT 58.882 43.478 0.00 0.00 44.62 3.85
209 210 3.492137 GGGTTCAACGCTTCCTATATCGT 60.492 47.826 0.00 0.00 36.67 3.73
210 211 3.057734 GGGTTCAACGCTTCCTATATCG 58.942 50.000 0.00 0.00 0.00 2.92
211 212 4.338379 AGGGTTCAACGCTTCCTATATC 57.662 45.455 0.16 0.00 38.28 1.63
212 213 4.772886 AAGGGTTCAACGCTTCCTATAT 57.227 40.909 13.89 0.00 46.59 0.86
220 221 1.152756 AGGCAAAGGGTTCAACGCT 60.153 52.632 0.16 0.16 43.70 5.07
221 222 1.285950 GAGGCAAAGGGTTCAACGC 59.714 57.895 0.00 0.00 0.00 4.84
222 223 1.574428 CGAGGCAAAGGGTTCAACG 59.426 57.895 0.00 0.00 0.00 4.10
223 224 1.524008 CCCGAGGCAAAGGGTTCAAC 61.524 60.000 4.08 0.00 42.67 3.18
224 225 1.228429 CCCGAGGCAAAGGGTTCAA 60.228 57.895 4.08 0.00 42.67 2.69
225 226 2.434331 CCCGAGGCAAAGGGTTCA 59.566 61.111 4.08 0.00 42.67 3.18
236 237 1.588824 TATATACACGCGGCCCGAGG 61.589 60.000 18.74 12.61 41.02 4.63
237 238 0.454600 ATATATACACGCGGCCCGAG 59.545 55.000 18.74 6.22 41.02 4.63
238 239 0.889994 AATATATACACGCGGCCCGA 59.110 50.000 18.74 0.00 41.02 5.14
239 240 0.996462 CAATATATACACGCGGCCCG 59.004 55.000 12.47 11.48 44.21 6.13
240 241 1.365699 CCAATATATACACGCGGCCC 58.634 55.000 12.47 0.00 0.00 5.80
241 242 1.365699 CCCAATATATACACGCGGCC 58.634 55.000 12.47 0.00 0.00 6.13
242 243 0.725117 GCCCAATATATACACGCGGC 59.275 55.000 12.47 0.00 0.00 6.53
243 244 2.087501 TGCCCAATATATACACGCGG 57.912 50.000 12.47 1.27 0.00 6.46
244 245 4.463209 CTTTTGCCCAATATATACACGCG 58.537 43.478 3.53 3.53 0.00 6.01
245 246 4.226761 GCTTTTGCCCAATATATACACGC 58.773 43.478 0.00 0.00 40.15 5.34
260 261 2.340337 CTTGTATGCCAAGGCTTTTGC 58.660 47.619 12.96 10.74 45.70 3.68
269 270 7.500892 TCTCTTTCTTTGTAACTTGTATGCCAA 59.499 33.333 0.00 0.00 0.00 4.52
270 271 6.995686 TCTCTTTCTTTGTAACTTGTATGCCA 59.004 34.615 0.00 0.00 0.00 4.92
271 272 7.435068 TCTCTTTCTTTGTAACTTGTATGCC 57.565 36.000 0.00 0.00 0.00 4.40
272 273 7.900352 CGATCTCTTTCTTTGTAACTTGTATGC 59.100 37.037 0.00 0.00 0.00 3.14
273 274 9.140286 TCGATCTCTTTCTTTGTAACTTGTATG 57.860 33.333 0.00 0.00 0.00 2.39
274 275 9.360093 CTCGATCTCTTTCTTTGTAACTTGTAT 57.640 33.333 0.00 0.00 0.00 2.29
275 276 8.573885 TCTCGATCTCTTTCTTTGTAACTTGTA 58.426 33.333 0.00 0.00 0.00 2.41
276 277 7.434492 TCTCGATCTCTTTCTTTGTAACTTGT 58.566 34.615 0.00 0.00 0.00 3.16
277 278 7.810282 TCTCTCGATCTCTTTCTTTGTAACTTG 59.190 37.037 0.00 0.00 0.00 3.16
278 279 7.887381 TCTCTCGATCTCTTTCTTTGTAACTT 58.113 34.615 0.00 0.00 0.00 2.66
279 280 7.455641 TCTCTCGATCTCTTTCTTTGTAACT 57.544 36.000 0.00 0.00 0.00 2.24
280 281 8.335256 GATCTCTCGATCTCTTTCTTTGTAAC 57.665 38.462 0.00 0.00 42.25 2.50
297 298 0.665835 CCTTCCTGGTCGATCTCTCG 59.334 60.000 0.00 0.00 46.41 4.04
308 309 1.689233 TCCCCGATCACCTTCCTGG 60.689 63.158 0.00 0.00 42.93 4.45
309 310 0.687757 TCTCCCCGATCACCTTCCTG 60.688 60.000 0.00 0.00 0.00 3.86
310 311 0.042731 TTCTCCCCGATCACCTTCCT 59.957 55.000 0.00 0.00 0.00 3.36
311 312 0.466124 CTTCTCCCCGATCACCTTCC 59.534 60.000 0.00 0.00 0.00 3.46
312 313 1.486211 TCTTCTCCCCGATCACCTTC 58.514 55.000 0.00 0.00 0.00 3.46
313 314 1.834263 CTTCTTCTCCCCGATCACCTT 59.166 52.381 0.00 0.00 0.00 3.50
314 315 1.007238 TCTTCTTCTCCCCGATCACCT 59.993 52.381 0.00 0.00 0.00 4.00
315 316 1.410882 CTCTTCTTCTCCCCGATCACC 59.589 57.143 0.00 0.00 0.00 4.02
316 317 2.379972 TCTCTTCTTCTCCCCGATCAC 58.620 52.381 0.00 0.00 0.00 3.06
317 318 2.828661 TCTCTTCTTCTCCCCGATCA 57.171 50.000 0.00 0.00 0.00 2.92
318 319 4.658063 TCTATCTCTTCTTCTCCCCGATC 58.342 47.826 0.00 0.00 0.00 3.69
319 320 4.352595 TCTCTATCTCTTCTTCTCCCCGAT 59.647 45.833 0.00 0.00 0.00 4.18
320 321 3.717392 TCTCTATCTCTTCTTCTCCCCGA 59.283 47.826 0.00 0.00 0.00 5.14
321 322 4.093472 TCTCTATCTCTTCTTCTCCCCG 57.907 50.000 0.00 0.00 0.00 5.73
322 323 5.640147 TCATCTCTATCTCTTCTTCTCCCC 58.360 45.833 0.00 0.00 0.00 4.81
323 324 5.711976 CCTCATCTCTATCTCTTCTTCTCCC 59.288 48.000 0.00 0.00 0.00 4.30
324 325 6.306987 ACCTCATCTCTATCTCTTCTTCTCC 58.693 44.000 0.00 0.00 0.00 3.71
325 326 7.936847 TGTACCTCATCTCTATCTCTTCTTCTC 59.063 40.741 0.00 0.00 0.00 2.87
326 327 7.811282 TGTACCTCATCTCTATCTCTTCTTCT 58.189 38.462 0.00 0.00 0.00 2.85
327 328 8.514594 CATGTACCTCATCTCTATCTCTTCTTC 58.485 40.741 0.00 0.00 34.09 2.87
328 329 8.224025 TCATGTACCTCATCTCTATCTCTTCTT 58.776 37.037 0.00 0.00 34.09 2.52
329 330 7.754624 TCATGTACCTCATCTCTATCTCTTCT 58.245 38.462 0.00 0.00 34.09 2.85
330 331 7.994425 TCATGTACCTCATCTCTATCTCTTC 57.006 40.000 0.00 0.00 34.09 2.87
331 332 8.954834 AATCATGTACCTCATCTCTATCTCTT 57.045 34.615 0.00 0.00 34.09 2.85
332 333 8.805175 CAAATCATGTACCTCATCTCTATCTCT 58.195 37.037 0.00 0.00 34.09 3.10
333 334 8.801299 TCAAATCATGTACCTCATCTCTATCTC 58.199 37.037 0.00 0.00 34.09 2.75
334 335 8.718158 TCAAATCATGTACCTCATCTCTATCT 57.282 34.615 0.00 0.00 34.09 1.98
335 336 9.770097 TTTCAAATCATGTACCTCATCTCTATC 57.230 33.333 0.00 0.00 34.09 2.08
336 337 9.553064 GTTTCAAATCATGTACCTCATCTCTAT 57.447 33.333 0.00 0.00 34.09 1.98
337 338 8.539544 TGTTTCAAATCATGTACCTCATCTCTA 58.460 33.333 0.00 0.00 34.09 2.43
338 339 7.397221 TGTTTCAAATCATGTACCTCATCTCT 58.603 34.615 0.00 0.00 34.09 3.10
339 340 7.550551 TCTGTTTCAAATCATGTACCTCATCTC 59.449 37.037 0.00 0.00 34.09 2.75
340 341 7.335422 GTCTGTTTCAAATCATGTACCTCATCT 59.665 37.037 0.00 0.00 34.09 2.90
341 342 7.335422 AGTCTGTTTCAAATCATGTACCTCATC 59.665 37.037 0.00 0.00 34.09 2.92
342 343 7.170965 AGTCTGTTTCAAATCATGTACCTCAT 58.829 34.615 0.00 0.00 37.22 2.90
343 344 6.533730 AGTCTGTTTCAAATCATGTACCTCA 58.466 36.000 0.00 0.00 0.00 3.86
344 345 6.092807 GGAGTCTGTTTCAAATCATGTACCTC 59.907 42.308 0.00 0.00 0.00 3.85
345 346 5.940470 GGAGTCTGTTTCAAATCATGTACCT 59.060 40.000 0.00 0.00 0.00 3.08
346 347 5.940470 AGGAGTCTGTTTCAAATCATGTACC 59.060 40.000 0.00 0.00 0.00 3.34
347 348 8.443937 GTTAGGAGTCTGTTTCAAATCATGTAC 58.556 37.037 0.00 0.00 0.00 2.90
348 349 7.606456 GGTTAGGAGTCTGTTTCAAATCATGTA 59.394 37.037 0.00 0.00 0.00 2.29
349 350 6.431234 GGTTAGGAGTCTGTTTCAAATCATGT 59.569 38.462 0.00 0.00 0.00 3.21
350 351 6.127897 GGGTTAGGAGTCTGTTTCAAATCATG 60.128 42.308 0.00 0.00 0.00 3.07
351 352 5.946377 GGGTTAGGAGTCTGTTTCAAATCAT 59.054 40.000 0.00 0.00 0.00 2.45
352 353 5.073144 AGGGTTAGGAGTCTGTTTCAAATCA 59.927 40.000 0.00 0.00 0.00 2.57
353 354 5.561679 AGGGTTAGGAGTCTGTTTCAAATC 58.438 41.667 0.00 0.00 0.00 2.17
354 355 5.584551 AGGGTTAGGAGTCTGTTTCAAAT 57.415 39.130 0.00 0.00 0.00 2.32
355 356 6.697641 ATAGGGTTAGGAGTCTGTTTCAAA 57.302 37.500 0.00 0.00 0.00 2.69
356 357 6.727231 TGTATAGGGTTAGGAGTCTGTTTCAA 59.273 38.462 0.00 0.00 0.00 2.69
357 358 6.258354 TGTATAGGGTTAGGAGTCTGTTTCA 58.742 40.000 0.00 0.00 0.00 2.69
358 359 6.786967 TGTATAGGGTTAGGAGTCTGTTTC 57.213 41.667 0.00 0.00 0.00 2.78
359 360 7.133483 AGATGTATAGGGTTAGGAGTCTGTTT 58.867 38.462 0.00 0.00 0.00 2.83
360 361 6.684538 AGATGTATAGGGTTAGGAGTCTGTT 58.315 40.000 0.00 0.00 0.00 3.16
361 362 6.282568 AGATGTATAGGGTTAGGAGTCTGT 57.717 41.667 0.00 0.00 0.00 3.41
362 363 5.712917 GGAGATGTATAGGGTTAGGAGTCTG 59.287 48.000 0.00 0.00 0.00 3.51
363 364 5.617851 AGGAGATGTATAGGGTTAGGAGTCT 59.382 44.000 0.00 0.00 0.00 3.24
364 365 5.894653 AGGAGATGTATAGGGTTAGGAGTC 58.105 45.833 0.00 0.00 0.00 3.36
365 366 5.952161 AGGAGATGTATAGGGTTAGGAGT 57.048 43.478 0.00 0.00 0.00 3.85
366 367 7.716123 CGTATAGGAGATGTATAGGGTTAGGAG 59.284 44.444 0.00 0.00 0.00 3.69
367 368 7.366281 CCGTATAGGAGATGTATAGGGTTAGGA 60.366 44.444 0.00 0.00 45.00 2.94
368 369 6.771749 CCGTATAGGAGATGTATAGGGTTAGG 59.228 46.154 0.00 0.00 45.00 2.69
369 370 7.344913 ACCGTATAGGAGATGTATAGGGTTAG 58.655 42.308 8.15 0.00 43.99 2.34
370 371 7.276088 ACCGTATAGGAGATGTATAGGGTTA 57.724 40.000 8.15 0.00 43.99 2.85
371 372 6.150034 ACCGTATAGGAGATGTATAGGGTT 57.850 41.667 8.15 0.00 43.99 4.11
372 373 5.793034 ACCGTATAGGAGATGTATAGGGT 57.207 43.478 8.15 8.15 42.67 4.34
373 374 8.763984 AATAACCGTATAGGAGATGTATAGGG 57.236 38.462 7.13 7.13 45.00 3.53
374 375 9.629878 AGAATAACCGTATAGGAGATGTATAGG 57.370 37.037 0.00 0.00 45.00 2.57
378 379 9.797642 TGTTAGAATAACCGTATAGGAGATGTA 57.202 33.333 0.00 0.00 45.00 2.29
379 380 8.701908 TGTTAGAATAACCGTATAGGAGATGT 57.298 34.615 0.00 0.00 45.00 3.06
380 381 9.408069 GTTGTTAGAATAACCGTATAGGAGATG 57.592 37.037 0.00 0.00 45.00 2.90
381 382 8.583296 GGTTGTTAGAATAACCGTATAGGAGAT 58.417 37.037 5.32 0.00 45.00 2.75
382 383 7.945134 GGTTGTTAGAATAACCGTATAGGAGA 58.055 38.462 5.32 0.00 45.00 3.71
392 393 5.458015 GTGCTTGTGGTTGTTAGAATAACC 58.542 41.667 12.58 12.58 46.64 2.85
393 394 5.240844 AGGTGCTTGTGGTTGTTAGAATAAC 59.759 40.000 0.00 0.00 0.00 1.89
394 395 5.381757 AGGTGCTTGTGGTTGTTAGAATAA 58.618 37.500 0.00 0.00 0.00 1.40
395 396 4.980573 AGGTGCTTGTGGTTGTTAGAATA 58.019 39.130 0.00 0.00 0.00 1.75
396 397 3.821033 GAGGTGCTTGTGGTTGTTAGAAT 59.179 43.478 0.00 0.00 0.00 2.40
397 398 3.118038 AGAGGTGCTTGTGGTTGTTAGAA 60.118 43.478 0.00 0.00 0.00 2.10
398 399 2.438021 AGAGGTGCTTGTGGTTGTTAGA 59.562 45.455 0.00 0.00 0.00 2.10
399 400 2.851195 AGAGGTGCTTGTGGTTGTTAG 58.149 47.619 0.00 0.00 0.00 2.34
400 401 3.290948 AAGAGGTGCTTGTGGTTGTTA 57.709 42.857 0.00 0.00 34.93 2.41
401 402 2.143876 AAGAGGTGCTTGTGGTTGTT 57.856 45.000 0.00 0.00 34.93 2.83
402 403 2.024414 GAAAGAGGTGCTTGTGGTTGT 58.976 47.619 0.00 0.00 36.80 3.32
403 404 1.338020 GGAAAGAGGTGCTTGTGGTTG 59.662 52.381 0.00 0.00 36.80 3.77
404 405 1.215423 AGGAAAGAGGTGCTTGTGGTT 59.785 47.619 0.00 0.00 36.80 3.67
405 406 0.846693 AGGAAAGAGGTGCTTGTGGT 59.153 50.000 0.00 0.00 36.80 4.16
406 407 1.986882 AAGGAAAGAGGTGCTTGTGG 58.013 50.000 0.00 0.00 36.80 4.17
407 408 6.431234 AGTTAATAAGGAAAGAGGTGCTTGTG 59.569 38.462 0.00 0.00 36.80 3.33
408 409 6.543735 AGTTAATAAGGAAAGAGGTGCTTGT 58.456 36.000 0.00 0.00 36.80 3.16
409 410 7.174946 TGAAGTTAATAAGGAAAGAGGTGCTTG 59.825 37.037 0.00 0.00 36.80 4.01
410 411 7.231467 TGAAGTTAATAAGGAAAGAGGTGCTT 58.769 34.615 0.00 0.00 38.88 3.91
411 412 6.779860 TGAAGTTAATAAGGAAAGAGGTGCT 58.220 36.000 0.00 0.00 0.00 4.40
412 413 7.475840 CATGAAGTTAATAAGGAAAGAGGTGC 58.524 38.462 0.00 0.00 0.00 5.01
413 414 7.415653 GGCATGAAGTTAATAAGGAAAGAGGTG 60.416 40.741 0.00 0.00 0.00 4.00
414 415 6.603599 GGCATGAAGTTAATAAGGAAAGAGGT 59.396 38.462 0.00 0.00 0.00 3.85
415 416 6.603201 TGGCATGAAGTTAATAAGGAAAGAGG 59.397 38.462 0.00 0.00 0.00 3.69
416 417 7.121168 TGTGGCATGAAGTTAATAAGGAAAGAG 59.879 37.037 0.00 0.00 0.00 2.85
417 418 6.945435 TGTGGCATGAAGTTAATAAGGAAAGA 59.055 34.615 0.00 0.00 0.00 2.52
418 419 7.156876 TGTGGCATGAAGTTAATAAGGAAAG 57.843 36.000 0.00 0.00 0.00 2.62
419 420 7.716799 ATGTGGCATGAAGTTAATAAGGAAA 57.283 32.000 0.00 0.00 0.00 3.13
420 421 8.815565 TTATGTGGCATGAAGTTAATAAGGAA 57.184 30.769 0.00 0.00 0.00 3.36
421 422 7.013274 GCTTATGTGGCATGAAGTTAATAAGGA 59.987 37.037 0.00 0.00 30.56 3.36
422 423 7.141363 GCTTATGTGGCATGAAGTTAATAAGG 58.859 38.462 0.00 0.00 30.56 2.69
423 424 7.706159 TGCTTATGTGGCATGAAGTTAATAAG 58.294 34.615 0.00 3.31 34.56 1.73
424 425 7.637631 TGCTTATGTGGCATGAAGTTAATAA 57.362 32.000 0.00 0.00 34.56 1.40
425 426 7.822161 ATGCTTATGTGGCATGAAGTTAATA 57.178 32.000 0.00 0.00 46.85 0.98
426 427 6.720112 ATGCTTATGTGGCATGAAGTTAAT 57.280 33.333 0.00 0.00 46.85 1.40
436 437 4.694760 AGACATAGATGCTTATGTGGCA 57.305 40.909 11.90 0.00 42.68 4.92
437 438 4.214971 CCAAGACATAGATGCTTATGTGGC 59.785 45.833 11.90 1.88 42.68 5.01
438 439 4.758674 CCCAAGACATAGATGCTTATGTGG 59.241 45.833 11.90 8.31 42.68 4.17
439 440 4.758674 CCCCAAGACATAGATGCTTATGTG 59.241 45.833 11.90 2.33 42.68 3.21
440 441 4.413520 ACCCCAAGACATAGATGCTTATGT 59.586 41.667 8.25 8.25 44.68 2.29
441 442 4.758674 CACCCCAAGACATAGATGCTTATG 59.241 45.833 0.00 0.00 37.13 1.90
442 443 4.747931 GCACCCCAAGACATAGATGCTTAT 60.748 45.833 0.00 0.00 0.00 1.73
443 444 3.433598 GCACCCCAAGACATAGATGCTTA 60.434 47.826 0.00 0.00 0.00 3.09
444 445 2.684927 GCACCCCAAGACATAGATGCTT 60.685 50.000 0.00 0.00 0.00 3.91
445 446 1.133976 GCACCCCAAGACATAGATGCT 60.134 52.381 0.00 0.00 0.00 3.79
446 447 1.312815 GCACCCCAAGACATAGATGC 58.687 55.000 0.00 0.00 0.00 3.91
447 448 1.134401 ACGCACCCCAAGACATAGATG 60.134 52.381 0.00 0.00 0.00 2.90
448 449 1.204146 ACGCACCCCAAGACATAGAT 58.796 50.000 0.00 0.00 0.00 1.98
449 450 0.981183 AACGCACCCCAAGACATAGA 59.019 50.000 0.00 0.00 0.00 1.98
450 451 2.684001 TAACGCACCCCAAGACATAG 57.316 50.000 0.00 0.00 0.00 2.23
451 452 4.967084 ATATAACGCACCCCAAGACATA 57.033 40.909 0.00 0.00 0.00 2.29
452 453 3.857157 ATATAACGCACCCCAAGACAT 57.143 42.857 0.00 0.00 0.00 3.06
453 454 3.637911 AATATAACGCACCCCAAGACA 57.362 42.857 0.00 0.00 0.00 3.41
454 455 4.700700 AGTAATATAACGCACCCCAAGAC 58.299 43.478 0.00 0.00 0.00 3.01
455 456 5.221501 GGTAGTAATATAACGCACCCCAAGA 60.222 44.000 0.00 0.00 0.00 3.02
456 457 4.992951 GGTAGTAATATAACGCACCCCAAG 59.007 45.833 0.00 0.00 0.00 3.61
457 458 4.655186 AGGTAGTAATATAACGCACCCCAA 59.345 41.667 0.00 0.00 32.69 4.12
458 459 4.225573 AGGTAGTAATATAACGCACCCCA 58.774 43.478 0.00 0.00 32.69 4.96
459 460 4.879197 AGGTAGTAATATAACGCACCCC 57.121 45.455 0.00 0.00 32.69 4.95
460 461 6.986250 ACTTAGGTAGTAATATAACGCACCC 58.014 40.000 0.00 0.00 34.56 4.61
461 462 9.399403 GTAACTTAGGTAGTAATATAACGCACC 57.601 37.037 0.00 0.00 35.54 5.01
474 475 8.769359 AGCCATAATGAAAGTAACTTAGGTAGT 58.231 33.333 0.00 0.00 39.32 2.73
477 478 8.769359 ACTAGCCATAATGAAAGTAACTTAGGT 58.231 33.333 0.00 0.00 0.00 3.08
478 479 9.262358 GACTAGCCATAATGAAAGTAACTTAGG 57.738 37.037 0.00 0.00 0.00 2.69
489 490 9.219603 GCATTACATAAGACTAGCCATAATGAA 57.780 33.333 0.00 0.00 32.84 2.57
490 491 8.597167 AGCATTACATAAGACTAGCCATAATGA 58.403 33.333 0.00 0.00 32.84 2.57
491 492 8.783833 AGCATTACATAAGACTAGCCATAATG 57.216 34.615 0.00 0.00 33.76 1.90
492 493 9.224267 CAAGCATTACATAAGACTAGCCATAAT 57.776 33.333 0.00 0.00 0.00 1.28
493 494 7.173218 GCAAGCATTACATAAGACTAGCCATAA 59.827 37.037 0.00 0.00 0.00 1.90
494 495 6.650807 GCAAGCATTACATAAGACTAGCCATA 59.349 38.462 0.00 0.00 0.00 2.74
495 496 5.471456 GCAAGCATTACATAAGACTAGCCAT 59.529 40.000 0.00 0.00 0.00 4.40
496 497 4.816385 GCAAGCATTACATAAGACTAGCCA 59.184 41.667 0.00 0.00 0.00 4.75
497 498 5.059833 AGCAAGCATTACATAAGACTAGCC 58.940 41.667 0.00 0.00 0.00 3.93
498 499 6.610741 AAGCAAGCATTACATAAGACTAGC 57.389 37.500 0.00 0.00 0.00 3.42
499 500 9.703892 AGATAAGCAAGCATTACATAAGACTAG 57.296 33.333 0.00 0.00 0.00 2.57
501 502 8.970859 AAGATAAGCAAGCATTACATAAGACT 57.029 30.769 0.00 0.00 0.00 3.24
504 505 9.162793 CGAAAAGATAAGCAAGCATTACATAAG 57.837 33.333 0.00 0.00 0.00 1.73
505 506 8.673711 ACGAAAAGATAAGCAAGCATTACATAA 58.326 29.630 0.00 0.00 0.00 1.90
506 507 8.122330 CACGAAAAGATAAGCAAGCATTACATA 58.878 33.333 0.00 0.00 0.00 2.29
511 512 5.156355 CACACGAAAAGATAAGCAAGCATT 58.844 37.500 0.00 0.00 0.00 3.56
515 516 3.119849 CCCCACACGAAAAGATAAGCAAG 60.120 47.826 0.00 0.00 0.00 4.01
524 525 0.250295 TCTCAGCCCCACACGAAAAG 60.250 55.000 0.00 0.00 0.00 2.27
529 530 1.021390 GTTCATCTCAGCCCCACACG 61.021 60.000 0.00 0.00 0.00 4.49
533 534 2.978156 AAAAGTTCATCTCAGCCCCA 57.022 45.000 0.00 0.00 0.00 4.96
582 3497 4.654015 CGTTTCGTCTGGTTTTCTTCAAA 58.346 39.130 0.00 0.00 0.00 2.69
675 3590 0.676466 CTTGCCGTGATTGCCTACCA 60.676 55.000 0.00 0.00 0.00 3.25
718 3645 0.386838 AACTGAAAAGCCACAGCAGC 59.613 50.000 0.00 0.00 43.56 5.25
806 3735 3.429410 GGCGTTACTAACCATTACGAGGT 60.429 47.826 0.00 0.00 42.34 3.85
811 3740 9.920826 GTTAAATTAGGCGTTACTAACCATTAC 57.079 33.333 0.00 0.00 35.90 1.89
812 3741 8.816144 CGTTAAATTAGGCGTTACTAACCATTA 58.184 33.333 0.00 0.00 35.90 1.90
819 3748 6.095440 AGGAGTCGTTAAATTAGGCGTTACTA 59.905 38.462 0.00 0.00 0.00 1.82
970 3899 4.658901 GGATACAGATAAGGGTTGGGAGAA 59.341 45.833 0.00 0.00 0.00 2.87
989 3918 1.121407 CGTGGCCATGGAGAGGGATA 61.121 60.000 18.40 0.00 0.00 2.59
1050 3979 2.343758 GTGACGGGCTTGAGCTGA 59.656 61.111 0.00 0.00 41.70 4.26
1241 4170 1.271102 ACGACAGAGAAGCAGGAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
1242 4171 1.621992 ACGACAGAGAAGCAGGAGAA 58.378 50.000 0.00 0.00 0.00 2.87
1248 4177 2.417379 GGCAGATTACGACAGAGAAGCA 60.417 50.000 0.00 0.00 0.00 3.91
1249 4178 2.197577 GGCAGATTACGACAGAGAAGC 58.802 52.381 0.00 0.00 0.00 3.86
1250 4179 2.428890 AGGGCAGATTACGACAGAGAAG 59.571 50.000 0.00 0.00 0.00 2.85
1251 4180 2.427453 GAGGGCAGATTACGACAGAGAA 59.573 50.000 0.00 0.00 0.00 2.87
1252 4181 2.025155 GAGGGCAGATTACGACAGAGA 58.975 52.381 0.00 0.00 0.00 3.10
1253 4182 2.028130 AGAGGGCAGATTACGACAGAG 58.972 52.381 0.00 0.00 0.00 3.35
1254 4183 2.145397 AGAGGGCAGATTACGACAGA 57.855 50.000 0.00 0.00 0.00 3.41
1255 4184 2.969628 AAGAGGGCAGATTACGACAG 57.030 50.000 0.00 0.00 0.00 3.51
1256 4185 3.695830 AAAAGAGGGCAGATTACGACA 57.304 42.857 0.00 0.00 0.00 4.35
1309 4239 5.282055 TCTCAAGTCAAGTCAATGTGTCT 57.718 39.130 0.00 0.00 0.00 3.41
1310 4240 6.426328 AGAATCTCAAGTCAAGTCAATGTGTC 59.574 38.462 0.00 0.00 0.00 3.67
1311 4241 6.294473 AGAATCTCAAGTCAAGTCAATGTGT 58.706 36.000 0.00 0.00 0.00 3.72
1312 4242 6.400834 CGAGAATCTCAAGTCAAGTCAATGTG 60.401 42.308 11.18 0.00 0.00 3.21
1346 4394 3.947196 TCATGTGCCAATCCAAGATGTAC 59.053 43.478 0.00 0.00 0.00 2.90
1353 4401 3.509575 GGTACTTTCATGTGCCAATCCAA 59.490 43.478 0.00 0.00 41.42 3.53
1416 4464 1.288419 TGTGTTCTGCCGCATACACG 61.288 55.000 23.21 3.12 42.81 4.49
1440 4488 6.266786 TCCGATTCTAGGAGCATAATACAACA 59.733 38.462 0.00 0.00 33.19 3.33
1442 4490 6.911250 TCCGATTCTAGGAGCATAATACAA 57.089 37.500 0.00 0.00 33.19 2.41
1452 4500 6.595716 AGTTTTTCACAATCCGATTCTAGGAG 59.404 38.462 0.00 0.00 41.66 3.69
1498 4547 3.511146 CACTTGCCACTTGGGATGTATTT 59.489 43.478 7.82 0.00 40.89 1.40
1539 4604 6.537453 GGAGTACTATACTGCATGATGGAT 57.463 41.667 0.00 0.00 45.23 3.41
1584 4649 2.489329 TCCCCGAGTAAGTGTCTAAACG 59.511 50.000 0.00 0.00 0.00 3.60
1625 4738 6.838198 TCATACGCACTTCCACAAATATAC 57.162 37.500 0.00 0.00 0.00 1.47
1636 4749 4.554973 GCATTTCTGTTTCATACGCACTTC 59.445 41.667 0.00 0.00 0.00 3.01
1645 4758 2.893424 ACCAGGGCATTTCTGTTTCAT 58.107 42.857 0.00 0.00 0.00 2.57
1654 4767 0.763986 AACAGGCAACCAGGGCATTT 60.764 50.000 0.00 0.00 35.46 2.32
1708 4821 7.656948 GCACAGAGAGCTTTCAATAAGATAGAT 59.343 37.037 7.06 0.00 0.00 1.98
1709 4822 6.983307 GCACAGAGAGCTTTCAATAAGATAGA 59.017 38.462 7.06 0.00 0.00 1.98
1710 4823 6.760298 TGCACAGAGAGCTTTCAATAAGATAG 59.240 38.462 7.06 0.00 0.00 2.08
2187 5341 4.614555 TGCTTGTTATATCGCCAAAGTG 57.385 40.909 0.00 0.00 0.00 3.16
2192 5346 6.294361 AGGTATATGCTTGTTATATCGCCA 57.706 37.500 0.00 0.00 0.00 5.69
2288 5442 2.294233 GTCAACAGCAAGCCTCATTGAA 59.706 45.455 0.00 0.00 31.09 2.69
2433 5587 2.713895 GCTTGGGAAAGCACTTCTTC 57.286 50.000 5.60 0.00 44.85 2.87
2528 5682 2.061740 GAACTTGCGGTAGTTCGAGT 57.938 50.000 9.49 0.00 43.10 4.18
2714 5868 9.462174 GTTGATCATCACAAGAACAAAATGTTA 57.538 29.630 0.00 0.00 41.28 2.41
2862 6017 8.015658 GCTTTGATAGTTCGTAGAAAACATGTT 58.984 33.333 4.92 4.92 45.90 2.71
2888 6043 2.277692 CGATGCAAGCCACATGCG 60.278 61.111 0.00 0.00 46.76 4.73
3035 6206 4.954118 AGACCCACCTGTCCGCCA 62.954 66.667 0.00 0.00 35.83 5.69
3068 6239 4.095334 TGCATGTGATGTGAAGTAAGATGC 59.905 41.667 0.00 0.00 35.37 3.91
3150 6323 1.945387 ATGATGCAGACTACCAAGCG 58.055 50.000 0.00 0.00 0.00 4.68
3178 6351 5.469760 CCGACCTCAATCACATATGCAAATA 59.530 40.000 1.58 0.00 0.00 1.40
3207 6380 2.238521 CAAAAGAACTGGCCCTAAGCA 58.761 47.619 0.00 0.00 46.50 3.91
3265 6438 7.997773 ACAAACTTAGAGGGAGGTTTATTTC 57.002 36.000 0.00 0.00 31.80 2.17
3272 6445 4.040584 GTCTCAACAAACTTAGAGGGAGGT 59.959 45.833 0.00 0.00 0.00 3.85
3316 6489 8.660373 CGCATCTCTTGTTCTTCTAAACTAATT 58.340 33.333 0.00 0.00 0.00 1.40
3317 6490 7.278868 CCGCATCTCTTGTTCTTCTAAACTAAT 59.721 37.037 0.00 0.00 0.00 1.73
3318 6491 6.590292 CCGCATCTCTTGTTCTTCTAAACTAA 59.410 38.462 0.00 0.00 0.00 2.24
3319 6492 6.100004 CCGCATCTCTTGTTCTTCTAAACTA 58.900 40.000 0.00 0.00 0.00 2.24
3320 6493 4.932200 CCGCATCTCTTGTTCTTCTAAACT 59.068 41.667 0.00 0.00 0.00 2.66
3321 6494 4.436183 GCCGCATCTCTTGTTCTTCTAAAC 60.436 45.833 0.00 0.00 0.00 2.01
3322 6495 3.684788 GCCGCATCTCTTGTTCTTCTAAA 59.315 43.478 0.00 0.00 0.00 1.85
3357 6546 1.768265 AAAAAGCCTCCCCTCCCTAA 58.232 50.000 0.00 0.00 0.00 2.69
3359 6548 4.377149 AAAAAGCCTCCCCTCCCT 57.623 55.556 0.00 0.00 0.00 4.20
3384 6575 4.010349 CACTAAGGGCTAGTTCTTTTGGG 58.990 47.826 5.32 0.00 38.92 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.