Multiple sequence alignment - TraesCS3B01G325700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G325700 chr3B 100.000 3248 0 0 1542 4789 526692210 526695457 0.000000e+00 5999.0
1 TraesCS3B01G325700 chr3B 100.000 1308 0 0 1 1308 526690669 526691976 0.000000e+00 2416.0
2 TraesCS3B01G325700 chr3B 90.173 173 15 2 2856 3027 489979020 489979191 1.730000e-54 224.0
3 TraesCS3B01G325700 chr3B 85.638 188 22 4 594 778 652753409 652753224 4.890000e-45 193.0
4 TraesCS3B01G325700 chr3B 92.857 126 8 1 4065 4189 372486386 372486261 1.060000e-41 182.0
5 TraesCS3B01G325700 chr3B 92.063 126 9 1 4065 4189 591893297 591893172 4.930000e-40 176.0
6 TraesCS3B01G325700 chr3D 93.582 1340 67 7 1542 2862 400991451 400992790 0.000000e+00 1980.0
7 TraesCS3B01G325700 chr3D 94.007 1068 35 4 3019 4085 400992788 400993827 0.000000e+00 1591.0
8 TraesCS3B01G325700 chr3D 88.907 1235 95 23 103 1308 400990211 400991432 0.000000e+00 1483.0
9 TraesCS3B01G325700 chr3D 95.852 458 15 3 4335 4789 400993868 400994324 0.000000e+00 737.0
10 TraesCS3B01G325700 chr3D 88.108 185 20 2 2842 3024 593088455 593088639 8.070000e-53 219.0
11 TraesCS3B01G325700 chr3D 93.443 122 6 2 4071 4191 326723579 326723699 3.810000e-41 180.0
12 TraesCS3B01G325700 chr3D 72.928 543 99 34 249 767 292135657 292136175 1.390000e-30 145.0
13 TraesCS3B01G325700 chr3D 100.000 45 0 0 4188 4232 400993826 400993870 3.070000e-12 84.2
14 TraesCS3B01G325700 chr3A 95.938 1157 47 0 1542 2698 521302130 521303286 0.000000e+00 1877.0
15 TraesCS3B01G325700 chr3A 93.774 1044 36 4 3047 4085 521303632 521304651 0.000000e+00 1541.0
16 TraesCS3B01G325700 chr3A 88.434 709 44 20 630 1308 521301411 521302111 0.000000e+00 821.0
17 TraesCS3B01G325700 chr3A 95.227 440 12 4 4352 4789 521304690 521305122 0.000000e+00 688.0
18 TraesCS3B01G325700 chr3A 86.828 577 64 7 2 576 521300843 521301409 6.760000e-178 634.0
19 TraesCS3B01G325700 chr3A 85.549 173 21 4 294 464 16271719 16271549 1.370000e-40 178.0
20 TraesCS3B01G325700 chr3A 100.000 41 0 0 4188 4228 521304650 521304690 5.140000e-10 76.8
21 TraesCS3B01G325700 chr5A 91.949 236 19 0 1551 1786 384619158 384619393 9.930000e-87 331.0
22 TraesCS3B01G325700 chr5A 89.888 178 16 2 2845 3021 320214420 320214244 1.340000e-55 228.0
23 TraesCS3B01G325700 chr5A 80.822 219 39 3 15 232 453663515 453663299 8.240000e-38 169.0
24 TraesCS3B01G325700 chr5A 74.236 458 72 32 338 764 104394035 104394477 2.990000e-32 150.0
25 TraesCS3B01G325700 chr5A 91.837 49 4 0 1922 1970 384619391 384619439 8.600000e-08 69.4
26 TraesCS3B01G325700 chr5A 78.151 119 17 6 85 197 261756601 261756716 3.090000e-07 67.6
27 TraesCS3B01G325700 chr5D 92.727 165 11 1 2859 3022 461072765 461072601 2.230000e-58 237.0
28 TraesCS3B01G325700 chr5D 75.410 427 70 21 362 767 178114337 178114749 1.770000e-39 174.0
29 TraesCS3B01G325700 chr5D 72.340 564 104 32 231 755 237216557 237217107 3.890000e-26 130.0
30 TraesCS3B01G325700 chr5D 72.174 575 108 31 231 767 383584541 383583981 1.400000e-25 128.0
31 TraesCS3B01G325700 chr5D 78.571 182 26 11 596 770 172265119 172264944 1.820000e-19 108.0
32 TraesCS3B01G325700 chr5D 78.169 142 29 2 92 232 391194073 391193933 6.600000e-14 89.8
33 TraesCS3B01G325700 chr5D 80.909 110 19 2 663 771 461980174 461980066 8.540000e-13 86.1
34 TraesCS3B01G325700 chr5D 80.357 112 20 2 661 771 559786337 559786227 3.070000e-12 84.2
35 TraesCS3B01G325700 chr2D 92.638 163 11 1 2861 3022 387193695 387193857 2.880000e-57 233.0
36 TraesCS3B01G325700 chr2D 95.413 109 5 0 4229 4337 139026158 139026050 1.770000e-39 174.0
37 TraesCS3B01G325700 chr2D 76.208 269 33 18 247 501 419498231 419497980 3.920000e-21 113.0
38 TraesCS3B01G325700 chr2D 84.071 113 14 3 661 771 335839315 335839425 6.550000e-19 106.0
39 TraesCS3B01G325700 chr2D 77.381 168 31 7 604 767 394398596 394398760 5.100000e-15 93.5
40 TraesCS3B01G325700 chr2D 76.730 159 33 4 76 232 56864116 56864272 8.540000e-13 86.1
41 TraesCS3B01G325700 chr7D 90.449 178 14 3 2845 3021 500775443 500775618 1.040000e-56 231.0
42 TraesCS3B01G325700 chr7D 90.230 174 15 2 2851 3022 154185896 154186069 4.820000e-55 226.0
43 TraesCS3B01G325700 chr7D 73.601 572 99 32 231 764 384601636 384602193 6.370000e-39 172.0
44 TraesCS3B01G325700 chr7D 76.652 227 34 17 552 767 482326092 482325874 1.820000e-19 108.0
45 TraesCS3B01G325700 chr7D 83.636 110 14 4 663 770 34547546 34547439 3.050000e-17 100.0
46 TraesCS3B01G325700 chr7D 83.178 107 18 0 661 767 83261848 83261954 1.100000e-16 99.0
47 TraesCS3B01G325700 chr7D 81.356 118 18 4 661 776 79052426 79052311 5.100000e-15 93.5
48 TraesCS3B01G325700 chr7D 76.037 217 29 16 247 445 449585463 449585674 1.840000e-14 91.6
49 TraesCS3B01G325700 chr6D 91.124 169 14 1 2854 3021 90112231 90112399 1.340000e-55 228.0
50 TraesCS3B01G325700 chr6D 74.431 571 92 39 229 762 472703824 472703271 3.780000e-46 196.0
51 TraesCS3B01G325700 chr6D 77.622 286 39 17 235 501 404704120 404703841 2.990000e-32 150.0
52 TraesCS3B01G325700 chr6D 72.408 569 96 40 231 764 321665582 321666124 1.810000e-24 124.0
53 TraesCS3B01G325700 chr6D 82.692 104 17 1 69 172 15533518 15533620 1.840000e-14 91.6
54 TraesCS3B01G325700 chr6D 82.857 105 15 3 664 767 186014017 186014119 1.840000e-14 91.6
55 TraesCS3B01G325700 chr6D 79.688 128 21 5 643 767 111490255 111490380 2.370000e-13 87.9
56 TraesCS3B01G325700 chr6D 74.274 241 36 16 236 457 269859282 269859515 1.430000e-10 78.7
57 TraesCS3B01G325700 chr6D 89.474 57 6 0 720 776 67448220 67448164 6.650000e-09 73.1
58 TraesCS3B01G325700 chr6D 89.474 57 6 0 720 776 246451261 246451205 6.650000e-09 73.1
59 TraesCS3B01G325700 chr6D 92.857 42 2 1 663 703 347760823 347760864 5.180000e-05 60.2
60 TraesCS3B01G325700 chr6A 91.124 169 14 1 2854 3021 108947871 108947703 1.340000e-55 228.0
61 TraesCS3B01G325700 chr6A 91.667 120 10 0 4231 4350 422165688 422165569 2.960000e-37 167.0
62 TraesCS3B01G325700 chr2B 94.355 124 5 2 4080 4202 460807280 460807158 6.330000e-44 189.0
63 TraesCS3B01G325700 chr2B 79.916 239 42 5 534 769 209017579 209017344 2.290000e-38 171.0
64 TraesCS3B01G325700 chr2B 91.057 123 9 2 4231 4352 637574748 637574627 1.070000e-36 165.0
65 TraesCS3B01G325700 chr1B 74.455 505 97 24 290 771 201454427 201453932 6.330000e-44 189.0
66 TraesCS3B01G325700 chr1B 94.017 117 5 2 4084 4199 491705795 491705680 4.930000e-40 176.0
67 TraesCS3B01G325700 chr1B 93.333 120 6 2 4084 4202 604145214 604145096 4.930000e-40 176.0
68 TraesCS3B01G325700 chr1B 90.840 131 9 3 4072 4200 637810942 637810813 6.370000e-39 172.0
69 TraesCS3B01G325700 chr1B 91.339 127 8 3 4070 4193 8679417 8679543 2.290000e-38 171.0
70 TraesCS3B01G325700 chr1B 76.879 173 35 5 61 231 10208700 10208531 5.100000e-15 93.5
71 TraesCS3B01G325700 chr1B 77.564 156 33 2 76 230 380428460 380428306 5.100000e-15 93.5
72 TraesCS3B01G325700 chr5B 95.575 113 5 0 4230 4342 110432619 110432731 1.060000e-41 182.0
73 TraesCS3B01G325700 chr5B 93.913 115 7 0 4224 4338 224628508 224628394 1.770000e-39 174.0
74 TraesCS3B01G325700 chr5B 95.413 109 5 0 4230 4338 441746403 441746511 1.770000e-39 174.0
75 TraesCS3B01G325700 chr5B 78.292 281 49 6 231 500 604137804 604138083 2.290000e-38 171.0
76 TraesCS3B01G325700 chr5B 74.365 433 69 30 365 770 167487606 167487189 3.860000e-31 147.0
77 TraesCS3B01G325700 chr5B 82.051 156 23 4 350 501 272026890 272027044 1.400000e-25 128.0
78 TraesCS3B01G325700 chr5B 77.064 218 31 14 288 500 122564239 122564442 1.820000e-19 108.0
79 TraesCS3B01G325700 chr5B 73.191 235 54 8 2 232 159313457 159313228 5.140000e-10 76.8
80 TraesCS3B01G325700 chr4B 93.443 122 6 2 4082 4202 646113932 646113812 3.810000e-41 180.0
81 TraesCS3B01G325700 chr4B 74.346 382 62 25 247 603 215533619 215533249 3.890000e-26 130.0
82 TraesCS3B01G325700 chr4B 74.632 272 45 12 241 495 381935558 381935822 1.100000e-16 99.0
83 TraesCS3B01G325700 chr2A 94.828 116 5 1 4083 4197 412471649 412471534 3.810000e-41 180.0
84 TraesCS3B01G325700 chr2A 78.229 271 45 8 237 495 558920937 558920669 1.380000e-35 161.0
85 TraesCS3B01G325700 chr2A 80.000 125 19 5 345 465 311004638 311004516 2.370000e-13 87.9
86 TraesCS3B01G325700 chr4A 94.783 115 5 1 4078 4191 713379618 713379732 1.370000e-40 178.0
87 TraesCS3B01G325700 chr4A 93.103 116 8 0 4228 4343 722426307 722426192 2.290000e-38 171.0
88 TraesCS3B01G325700 chr4A 74.576 177 37 6 61 233 646041962 646041790 2.390000e-08 71.3
89 TraesCS3B01G325700 chr4A 74.719 178 30 11 63 232 565017517 565017347 1.110000e-06 65.8
90 TraesCS3B01G325700 chr4A 72.689 238 45 14 236 457 438802635 438802868 1.440000e-05 62.1
91 TraesCS3B01G325700 chr6B 93.860 114 7 0 4227 4340 20752607 20752494 6.370000e-39 172.0
92 TraesCS3B01G325700 chr6B 90.076 131 9 4 4230 4356 544804605 544804475 2.960000e-37 167.0
93 TraesCS3B01G325700 chr6B 76.682 223 39 9 247 456 316672991 316673213 1.410000e-20 111.0
94 TraesCS3B01G325700 chr1D 81.395 215 34 6 21 232 493958655 493958866 2.290000e-38 171.0
95 TraesCS3B01G325700 chr1D 76.429 280 37 19 241 501 98926273 98926542 1.810000e-24 124.0
96 TraesCS3B01G325700 chr1D 83.486 109 16 2 660 767 219620205 219620312 3.050000e-17 100.0
97 TraesCS3B01G325700 chr1D 89.583 48 3 2 76 121 331131417 331131464 5.180000e-05 60.2
98 TraesCS3B01G325700 chr7A 90.076 131 12 1 4060 4189 32594362 32594492 8.240000e-38 169.0
99 TraesCS3B01G325700 chr1A 77.391 230 37 12 2 226 500079440 500079659 6.510000e-24 122.0
100 TraesCS3B01G325700 chr1A 75.102 245 43 15 534 770 501305954 501305720 1.100000e-16 99.0
101 TraesCS3B01G325700 chr4D 84.112 107 13 4 663 767 52303345 52303241 3.050000e-17 100.0
102 TraesCS3B01G325700 chr4D 74.733 281 41 17 231 495 133226196 133225930 1.100000e-16 99.0
103 TraesCS3B01G325700 chr4D 80.180 111 19 3 661 770 270244044 270243936 3.970000e-11 80.5
104 TraesCS3B01G325700 chr4D 78.632 117 23 2 661 776 168514968 168514853 5.140000e-10 76.8
105 TraesCS3B01G325700 chr4D 79.630 108 19 3 661 767 180325926 180326031 1.850000e-09 75.0
106 TraesCS3B01G325700 chr4D 89.655 58 6 0 710 767 200614388 200614445 1.850000e-09 75.0
107 TraesCS3B01G325700 chr4D 92.157 51 4 0 717 767 39649124 39649174 6.650000e-09 73.1
108 TraesCS3B01G325700 chr4D 92.157 51 4 0 717 767 77074088 77074138 6.650000e-09 73.1
109 TraesCS3B01G325700 chr7B 77.622 143 21 8 61 197 24010685 24010548 5.140000e-10 76.8
110 TraesCS3B01G325700 chrUn 93.750 48 3 0 720 767 11610645 11610692 6.650000e-09 73.1
111 TraesCS3B01G325700 chrUn 90.741 54 5 0 720 773 105791119 105791172 6.650000e-09 73.1
112 TraesCS3B01G325700 chrUn 90.741 54 5 0 720 773 106315416 106315469 6.650000e-09 73.1
113 TraesCS3B01G325700 chrUn 79.048 105 22 0 663 767 298968328 298968432 6.650000e-09 73.1
114 TraesCS3B01G325700 chrUn 90.741 54 5 0 720 773 316160569 316160622 6.650000e-09 73.1
115 TraesCS3B01G325700 chrUn 78.505 107 23 0 661 767 4828838 4828944 2.390000e-08 71.3
116 TraesCS3B01G325700 chrUn 92.000 50 4 0 718 767 220390302 220390253 2.390000e-08 71.3
117 TraesCS3B01G325700 chrUn 91.667 48 4 0 720 767 668474 668427 3.090000e-07 67.6
118 TraesCS3B01G325700 chrUn 87.719 57 7 0 720 776 4370902 4370846 3.090000e-07 67.6
119 TraesCS3B01G325700 chrUn 87.719 57 7 0 720 776 5478671 5478615 3.090000e-07 67.6
120 TraesCS3B01G325700 chrUn 87.719 57 7 0 720 776 8307200 8307144 3.090000e-07 67.6
121 TraesCS3B01G325700 chrUn 91.667 48 4 0 720 767 9407815 9407862 3.090000e-07 67.6
122 TraesCS3B01G325700 chrUn 87.719 57 7 0 720 776 9423236 9423180 3.090000e-07 67.6
123 TraesCS3B01G325700 chrUn 86.885 61 7 1 716 776 22499390 22499331 3.090000e-07 67.6
124 TraesCS3B01G325700 chrUn 90.385 52 4 1 716 767 126775713 126775763 3.090000e-07 67.6
125 TraesCS3B01G325700 chrUn 86.885 61 7 1 716 776 276113056 276112997 3.090000e-07 67.6
126 TraesCS3B01G325700 chrUn 86.885 61 7 1 716 776 277041400 277041341 3.090000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G325700 chr3B 526690669 526695457 4788 False 4207.500000 5999 100.000000 1 4789 2 chr3B.!!$F2 4788
1 TraesCS3B01G325700 chr3D 400990211 400994324 4113 False 1175.040000 1980 94.469600 103 4789 5 chr3D.!!$F4 4686
2 TraesCS3B01G325700 chr3A 521300843 521305122 4279 False 939.633333 1877 93.366833 2 4789 6 chr3A.!!$F1 4787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 695 0.107993 TGCTCGGAGCTCCATTTCTG 60.108 55.0 31.67 14.73 42.97 3.02 F
1237 1275 0.419459 ATCCACAACTCTCCTCCCCT 59.581 55.0 0.00 0.00 0.00 4.79 F
2396 2437 0.243365 GCTCTCTCGCATCCATCGAT 59.757 55.0 0.00 0.00 35.25 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2104 0.532573 AGTGTACCATCTCCAGCGTG 59.467 55.0 0.00 0.00 0.00 5.34 R
3072 3269 0.582005 GTGCGTGACTTCAACCACTC 59.418 55.0 0.00 0.00 0.00 3.51 R
4171 4374 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.593265 CCCTTGTGGCTCCATTTGC 59.407 57.895 0.00 0.00 0.00 3.68
38 39 1.284785 CTCCATTTGCCCTACCTCCAA 59.715 52.381 0.00 0.00 0.00 3.53
41 42 2.094675 CATTTGCCCTACCTCCAAGTG 58.905 52.381 0.00 0.00 0.00 3.16
50 51 4.443034 CCCTACCTCCAAGTGCATAAGTAC 60.443 50.000 0.00 0.00 0.00 2.73
57 58 4.000988 CCAAGTGCATAAGTACCGTCTTT 58.999 43.478 0.00 0.00 0.00 2.52
59 60 3.858247 AGTGCATAAGTACCGTCTTTCC 58.142 45.455 0.00 0.00 0.00 3.13
64 65 4.599047 CATAAGTACCGTCTTTCCGAGAG 58.401 47.826 0.00 0.00 34.31 3.20
71 72 2.479275 CCGTCTTTCCGAGAGAAAAACC 59.521 50.000 0.00 0.00 43.84 3.27
72 73 2.479275 CGTCTTTCCGAGAGAAAAACCC 59.521 50.000 0.00 0.00 43.84 4.11
73 74 3.473625 GTCTTTCCGAGAGAAAAACCCA 58.526 45.455 0.00 0.00 43.84 4.51
74 75 4.072839 GTCTTTCCGAGAGAAAAACCCAT 58.927 43.478 0.00 0.00 43.84 4.00
83 84 5.064071 CGAGAGAAAAACCCATAGAGAAAGC 59.936 44.000 0.00 0.00 0.00 3.51
86 87 7.007116 AGAGAAAAACCCATAGAGAAAGCTTT 58.993 34.615 12.53 12.53 0.00 3.51
89 90 9.314133 AGAAAAACCCATAGAGAAAGCTTTATT 57.686 29.630 12.68 3.31 0.00 1.40
90 91 9.358872 GAAAAACCCATAGAGAAAGCTTTATTG 57.641 33.333 12.68 4.33 0.00 1.90
98 99 9.000018 CATAGAGAAAGCTTTATTGCGTTTTAC 58.000 33.333 12.68 0.00 35.02 2.01
113 114 1.308047 TTTACGATACGGAGCCGCTA 58.692 50.000 9.14 1.54 44.19 4.26
114 115 0.588252 TTACGATACGGAGCCGCTAC 59.412 55.000 9.14 0.00 44.19 3.58
121 122 3.075005 GGAGCCGCTACCACCTCA 61.075 66.667 0.00 0.00 0.00 3.86
140 141 4.264253 CTCATGTTCTTCATTGGTAGGCA 58.736 43.478 0.00 0.00 34.09 4.75
148 149 4.409901 TCTTCATTGGTAGGCATGATCTGA 59.590 41.667 0.00 0.00 29.45 3.27
150 151 4.711399 TCATTGGTAGGCATGATCTGAAG 58.289 43.478 0.00 0.00 0.00 3.02
153 154 3.378512 TGGTAGGCATGATCTGAAGTCT 58.621 45.455 0.00 0.00 0.00 3.24
154 155 4.546674 TGGTAGGCATGATCTGAAGTCTA 58.453 43.478 0.00 0.00 0.00 2.59
158 159 5.226194 AGGCATGATCTGAAGTCTATTCC 57.774 43.478 0.00 0.00 0.00 3.01
226 227 4.686972 TCTTCATCGACAACCTCATGATC 58.313 43.478 0.00 0.00 0.00 2.92
234 235 3.448934 ACAACCTCATGATCCTCACTCT 58.551 45.455 0.00 0.00 0.00 3.24
245 246 8.001292 TCATGATCCTCACTCTGAAATAGTCTA 58.999 37.037 0.00 0.00 0.00 2.59
273 274 8.672823 AATAAGACCCGATCAACCTTATTAAC 57.327 34.615 13.27 0.00 37.90 2.01
280 281 5.178809 CCGATCAACCTTATTAACGGATTCC 59.821 44.000 0.00 0.00 41.30 3.01
284 285 7.619964 TCAACCTTATTAACGGATTCCTTTC 57.380 36.000 0.30 0.00 0.00 2.62
285 286 6.314400 TCAACCTTATTAACGGATTCCTTTCG 59.686 38.462 0.30 0.00 0.00 3.46
292 293 0.172803 CGGATTCCTTTCGAGGTCGT 59.827 55.000 0.30 0.00 40.80 4.34
300 301 3.006537 TCCTTTCGAGGTCGTTGAATTCT 59.993 43.478 7.05 0.00 40.80 2.40
337 338 7.396623 CCTTCTCTAACTTTAGTTCACTCCCTA 59.603 40.741 0.00 0.00 39.31 3.53
495 496 1.172180 ATTGGCACTGAACACACCCG 61.172 55.000 0.00 0.00 0.00 5.28
496 497 2.978010 GGCACTGAACACACCCGG 60.978 66.667 0.00 0.00 0.00 5.73
497 498 2.978010 GCACTGAACACACCCGGG 60.978 66.667 22.25 22.25 0.00 5.73
612 614 4.541705 CATCTTCTTCCTCCACCTCTAGA 58.458 47.826 0.00 0.00 0.00 2.43
619 621 6.712276 TCTTCCTCCACCTCTAGAAAAATTC 58.288 40.000 0.00 0.00 0.00 2.17
622 624 6.418101 TCCTCCACCTCTAGAAAAATTCATG 58.582 40.000 0.00 0.00 0.00 3.07
631 633 7.609532 CCTCTAGAAAAATTCATGTCCAGTTCT 59.390 37.037 0.00 1.23 0.00 3.01
635 637 8.697507 AGAAAAATTCATGTCCAGTTCTTAGT 57.302 30.769 0.00 0.00 0.00 2.24
638 640 8.463930 AAAATTCATGTCCAGTTCTTAGTTCA 57.536 30.769 0.00 0.00 0.00 3.18
685 687 1.851658 GATCTCTTTGCTCGGAGCTC 58.148 55.000 28.42 13.49 42.97 4.09
691 693 1.399791 CTTTGCTCGGAGCTCCATTTC 59.600 52.381 31.67 17.20 42.97 2.17
692 694 0.615331 TTGCTCGGAGCTCCATTTCT 59.385 50.000 31.67 0.00 42.97 2.52
693 695 0.107993 TGCTCGGAGCTCCATTTCTG 60.108 55.000 31.67 14.73 42.97 3.02
703 705 5.010012 GGAGCTCCATTTCTGAAACTTTTCA 59.990 40.000 28.43 4.39 39.22 2.69
760 762 9.410556 CATTGGTCCAATTAGTTTTTGTTCTAG 57.589 33.333 14.80 0.00 31.05 2.43
767 769 9.030301 CCAATTAGTTTTTGTTCTAGTGGTTTG 57.970 33.333 0.00 0.00 0.00 2.93
785 787 5.751028 TGGTTTGTACATAGCTTGCAAAAAC 59.249 36.000 15.06 4.89 31.99 2.43
793 795 2.916111 AGCTTGCAAAAACGTCGTATG 58.084 42.857 0.00 0.00 0.00 2.39
800 802 4.451435 TGCAAAAACGTCGTATGTTATGGA 59.549 37.500 0.00 0.00 0.00 3.41
801 803 4.784550 GCAAAAACGTCGTATGTTATGGAC 59.215 41.667 0.00 0.00 0.00 4.02
802 804 5.615106 GCAAAAACGTCGTATGTTATGGACA 60.615 40.000 0.00 0.00 43.71 4.02
819 822 5.728937 TGGACAGAGGGAGTACTACTTAT 57.271 43.478 4.77 0.00 0.00 1.73
881 886 6.410388 CCTTTAGGTTCTATATTGCCTCCCAA 60.410 42.308 0.00 0.00 37.94 4.12
930 935 7.320384 TGAGGATGAATAGCCTTCAATCATA 57.680 36.000 3.67 0.00 44.35 2.15
959 987 4.503714 TTTATTGAGGGGTAGCCTTCAG 57.496 45.455 22.95 0.00 0.00 3.02
962 990 0.617820 TGAGGGGTAGCCTTCAGTCC 60.618 60.000 20.78 0.00 0.00 3.85
967 995 2.225041 GGGGTAGCCTTCAGTCCTTTTT 60.225 50.000 11.48 0.00 0.00 1.94
997 1025 4.640771 TTGAGAAACCTGTAGCCTTCAT 57.359 40.909 0.00 0.00 0.00 2.57
1084 1117 0.468029 AGCCCAACCCAACTTGACTG 60.468 55.000 0.00 0.00 0.00 3.51
1208 1246 4.388499 CCACCGTCCCAACCCGAG 62.388 72.222 0.00 0.00 0.00 4.63
1231 1269 2.629336 GGATCCATCCACAACTCTCC 57.371 55.000 6.95 0.00 46.38 3.71
1232 1270 2.122768 GGATCCATCCACAACTCTCCT 58.877 52.381 6.95 0.00 46.38 3.69
1234 1272 1.573108 TCCATCCACAACTCTCCTCC 58.427 55.000 0.00 0.00 0.00 4.30
1236 1274 0.543749 CATCCACAACTCTCCTCCCC 59.456 60.000 0.00 0.00 0.00 4.81
1237 1275 0.419459 ATCCACAACTCTCCTCCCCT 59.581 55.000 0.00 0.00 0.00 4.79
1695 1736 1.080354 CACCTCCCCACCCTCTACA 59.920 63.158 0.00 0.00 0.00 2.74
1699 1740 3.081409 CCCCACCCTCTACACCCG 61.081 72.222 0.00 0.00 0.00 5.28
1727 1768 4.148825 CTCAGGTTCTCCGGGCCG 62.149 72.222 21.46 21.46 39.05 6.13
1811 1852 1.533625 CCAAACGAATCAAGCCCTCA 58.466 50.000 0.00 0.00 0.00 3.86
1901 1942 2.037136 CGTCTGCCTGCCCAAGAAG 61.037 63.158 0.00 0.00 0.00 2.85
2154 2195 0.950836 CTTGTTCATGCCCAACGTGA 59.049 50.000 0.00 0.00 42.69 4.35
2159 2200 1.210931 CATGCCCAACGTGAAGCAG 59.789 57.895 11.58 2.32 38.89 4.24
2163 2204 4.389576 CCAACGTGAAGCAGCGGC 62.390 66.667 0.00 0.00 41.61 6.53
2263 2304 3.512516 GCCGGATGTCAGCAAGGC 61.513 66.667 5.05 10.38 36.88 4.35
2362 2403 2.898738 CCTCACGCTCAGAGGCAT 59.101 61.111 0.00 0.00 45.51 4.40
2395 2436 0.821301 AGCTCTCTCGCATCCATCGA 60.821 55.000 0.00 0.00 34.52 3.59
2396 2437 0.243365 GCTCTCTCGCATCCATCGAT 59.757 55.000 0.00 0.00 35.25 3.59
2408 2449 4.674475 CATCCATCGATCTCTATCAGCTG 58.326 47.826 7.63 7.63 31.93 4.24
2445 2486 8.697292 GTTAATTTGTCTAGATCTGGAGTAGGT 58.303 37.037 9.35 0.00 0.00 3.08
2473 2514 5.596361 TGTCCAATTGTTCACAATACTGGTT 59.404 36.000 17.37 0.00 45.06 3.67
2495 2536 6.649141 GGTTATGATACGTGGAAGAATATGCA 59.351 38.462 0.00 0.00 0.00 3.96
2500 2541 8.117813 TGATACGTGGAAGAATATGCATAGTA 57.882 34.615 12.79 5.93 0.00 1.82
2514 2555 3.132111 TGCATAGTAGATGAACGGAAGCA 59.868 43.478 0.00 0.00 0.00 3.91
2541 2582 1.972795 AGGCTACGTGTTCCTTGGTAA 59.027 47.619 0.00 0.00 0.00 2.85
2564 2605 3.773860 TTACAGTGTGTTTGCCTTGTG 57.226 42.857 5.88 0.00 0.00 3.33
2678 2719 7.559897 TGAAAACTTGATTTTAGGAAGGACAGT 59.440 33.333 0.00 0.00 40.73 3.55
2692 2733 1.806542 GGACAGTGTAGTTCGACCGTA 59.193 52.381 0.00 0.00 0.00 4.02
2698 2739 5.084722 CAGTGTAGTTCGACCGTAACTTAG 58.915 45.833 10.63 0.00 38.18 2.18
2700 2741 5.932303 AGTGTAGTTCGACCGTAACTTAGTA 59.068 40.000 10.63 0.00 38.18 1.82
2702 2743 4.954092 AGTTCGACCGTAACTTAGTAGG 57.046 45.455 0.00 0.00 33.39 3.18
2704 2745 5.189180 AGTTCGACCGTAACTTAGTAGGAT 58.811 41.667 8.11 0.00 33.39 3.24
2705 2746 5.295540 AGTTCGACCGTAACTTAGTAGGATC 59.704 44.000 8.11 0.00 33.39 3.36
2706 2747 4.769688 TCGACCGTAACTTAGTAGGATCA 58.230 43.478 8.11 0.00 0.00 2.92
2707 2748 5.371526 TCGACCGTAACTTAGTAGGATCAT 58.628 41.667 8.11 0.00 0.00 2.45
2709 2750 5.237996 CGACCGTAACTTAGTAGGATCATCA 59.762 44.000 8.11 0.00 0.00 3.07
2711 2752 7.118825 CGACCGTAACTTAGTAGGATCATCATA 59.881 40.741 8.11 0.00 0.00 2.15
2712 2753 8.880991 ACCGTAACTTAGTAGGATCATCATAT 57.119 34.615 8.11 0.00 0.00 1.78
2713 2754 8.958506 ACCGTAACTTAGTAGGATCATCATATC 58.041 37.037 8.11 0.00 0.00 1.63
2715 2756 9.995957 CGTAACTTAGTAGGATCATCATATCTG 57.004 37.037 0.00 0.00 0.00 2.90
2793 2877 0.248012 ATGTGTGTGGCAATGCATGG 59.752 50.000 7.79 0.00 0.00 3.66
2800 2884 0.973496 TGGCAATGCATGGTGCTGAT 60.973 50.000 19.89 0.00 45.31 2.90
2807 2891 5.220381 CAATGCATGGTGCTGATAAAGATC 58.780 41.667 0.00 0.00 45.31 2.75
2815 2899 4.569966 GGTGCTGATAAAGATCTGTCACTG 59.430 45.833 0.00 0.00 37.71 3.66
2865 2949 7.376615 ACTCAAGTACTTGTGTTATGTACTCC 58.623 38.462 28.85 0.00 44.76 3.85
2866 2950 6.694447 TCAAGTACTTGTGTTATGTACTCCC 58.306 40.000 29.83 0.00 44.76 4.30
2867 2951 6.495872 TCAAGTACTTGTGTTATGTACTCCCT 59.504 38.462 29.83 0.00 44.76 4.20
2868 2952 6.527057 AGTACTTGTGTTATGTACTCCCTC 57.473 41.667 0.00 0.00 43.09 4.30
2869 2953 4.820894 ACTTGTGTTATGTACTCCCTCC 57.179 45.455 0.00 0.00 0.00 4.30
2870 2954 3.518303 ACTTGTGTTATGTACTCCCTCCC 59.482 47.826 0.00 0.00 0.00 4.30
2871 2955 3.484953 TGTGTTATGTACTCCCTCCCT 57.515 47.619 0.00 0.00 0.00 4.20
2872 2956 3.798515 TGTGTTATGTACTCCCTCCCTT 58.201 45.455 0.00 0.00 0.00 3.95
2873 2957 4.172807 TGTGTTATGTACTCCCTCCCTTT 58.827 43.478 0.00 0.00 0.00 3.11
2874 2958 4.224370 TGTGTTATGTACTCCCTCCCTTTC 59.776 45.833 0.00 0.00 0.00 2.62
2875 2959 4.470304 GTGTTATGTACTCCCTCCCTTTCT 59.530 45.833 0.00 0.00 0.00 2.52
2876 2960 5.659971 GTGTTATGTACTCCCTCCCTTTCTA 59.340 44.000 0.00 0.00 0.00 2.10
2877 2961 6.155737 GTGTTATGTACTCCCTCCCTTTCTAA 59.844 42.308 0.00 0.00 0.00 2.10
2878 2962 6.731919 TGTTATGTACTCCCTCCCTTTCTAAA 59.268 38.462 0.00 0.00 0.00 1.85
2879 2963 7.404980 TGTTATGTACTCCCTCCCTTTCTAAAT 59.595 37.037 0.00 0.00 0.00 1.40
2880 2964 8.931568 GTTATGTACTCCCTCCCTTTCTAAATA 58.068 37.037 0.00 0.00 0.00 1.40
2881 2965 9.684702 TTATGTACTCCCTCCCTTTCTAAATAT 57.315 33.333 0.00 0.00 0.00 1.28
2883 2967 9.684702 ATGTACTCCCTCCCTTTCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
2884 2968 9.155785 TGTACTCCCTCCCTTTCTAAATATAAG 57.844 37.037 0.00 0.00 0.00 1.73
2885 2969 9.156940 GTACTCCCTCCCTTTCTAAATATAAGT 57.843 37.037 0.00 0.00 0.00 2.24
2886 2970 8.265108 ACTCCCTCCCTTTCTAAATATAAGTC 57.735 38.462 0.00 0.00 0.00 3.01
2887 2971 8.074991 ACTCCCTCCCTTTCTAAATATAAGTCT 58.925 37.037 0.00 0.00 0.00 3.24
2888 2972 8.871570 TCCCTCCCTTTCTAAATATAAGTCTT 57.128 34.615 0.00 0.00 0.00 3.01
2889 2973 9.292751 TCCCTCCCTTTCTAAATATAAGTCTTT 57.707 33.333 0.00 0.00 0.00 2.52
2890 2974 9.922477 CCCTCCCTTTCTAAATATAAGTCTTTT 57.078 33.333 0.00 0.00 0.00 2.27
2918 3002 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
2919 3003 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
2920 3004 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
2921 3005 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
2923 3007 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
2924 3008 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
2925 3009 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
2963 3047 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2964 3048 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2965 3049 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2966 3050 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2967 3051 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2968 3052 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
2969 3053 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
2970 3054 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
2972 3056 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
2973 3057 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
2974 3058 8.414003 TCACTCATTTTGCTTCGTATATAGTCT 58.586 33.333 0.00 0.00 0.00 3.24
2975 3059 8.483218 CACTCATTTTGCTTCGTATATAGTCTG 58.517 37.037 0.00 0.00 0.00 3.51
2976 3060 8.198109 ACTCATTTTGCTTCGTATATAGTCTGT 58.802 33.333 0.00 0.00 0.00 3.41
2977 3061 9.678941 CTCATTTTGCTTCGTATATAGTCTGTA 57.321 33.333 0.00 0.00 0.00 2.74
2981 3065 8.812147 TTTGCTTCGTATATAGTCTGTAATGG 57.188 34.615 0.00 0.00 0.00 3.16
2982 3066 7.754851 TGCTTCGTATATAGTCTGTAATGGA 57.245 36.000 0.00 0.00 0.00 3.41
2983 3067 8.349568 TGCTTCGTATATAGTCTGTAATGGAT 57.650 34.615 0.00 0.00 0.00 3.41
2984 3068 8.803235 TGCTTCGTATATAGTCTGTAATGGATT 58.197 33.333 0.00 0.00 0.00 3.01
2985 3069 9.291664 GCTTCGTATATAGTCTGTAATGGATTC 57.708 37.037 0.00 0.00 0.00 2.52
2988 3072 9.961264 TCGTATATAGTCTGTAATGGATTCTCT 57.039 33.333 0.00 0.00 0.00 3.10
2996 3080 9.660180 AGTCTGTAATGGATTCTCTAAAAAGTC 57.340 33.333 0.00 0.00 0.00 3.01
2997 3081 9.660180 GTCTGTAATGGATTCTCTAAAAAGTCT 57.340 33.333 0.00 0.00 0.00 3.24
3016 3100 8.943909 AAAGTCTTATATTTAGGAACGGAGTG 57.056 34.615 0.00 0.00 45.00 3.51
3017 3101 7.893124 AGTCTTATATTTAGGAACGGAGTGA 57.107 36.000 0.00 0.00 45.00 3.41
3043 3127 6.916360 AGCAATTTGTAGATTCCAGGAAAA 57.084 33.333 5.81 0.00 0.00 2.29
3044 3128 6.691508 AGCAATTTGTAGATTCCAGGAAAAC 58.308 36.000 5.81 5.91 0.00 2.43
3046 3130 6.928492 GCAATTTGTAGATTCCAGGAAAACAA 59.072 34.615 17.88 17.88 0.00 2.83
3047 3131 7.116805 GCAATTTGTAGATTCCAGGAAAACAAG 59.883 37.037 19.62 13.58 30.54 3.16
3048 3132 6.648879 TTTGTAGATTCCAGGAAAACAAGG 57.351 37.500 19.62 0.00 30.54 3.61
3054 3251 2.306847 TCCAGGAAAACAAGGAGTTGC 58.693 47.619 0.00 0.00 41.19 4.17
3062 3259 1.871080 ACAAGGAGTTGCTTGAGTCG 58.129 50.000 18.43 0.00 37.14 4.18
3072 3269 2.333926 TGCTTGAGTCGGAACATAACG 58.666 47.619 0.00 0.00 0.00 3.18
3088 3285 1.567504 AACGAGTGGTTGAAGTCACG 58.432 50.000 0.00 0.00 37.50 4.35
3100 3297 3.302555 TGAAGTCACGCACTACTTAACG 58.697 45.455 0.00 0.00 36.10 3.18
3183 3380 7.783090 TTTATCTCATCTGCAGATTGAGTTC 57.217 36.000 32.29 0.00 34.41 3.01
3195 3392 6.372659 TGCAGATTGAGTTCTTACCTCATTTC 59.627 38.462 0.00 0.00 38.66 2.17
3251 3448 9.791801 TTAGCTGGTGAATATAAAGATATTGCA 57.208 29.630 0.00 0.00 38.19 4.08
3299 3496 6.341316 GTTGAGGATATTGTCAGTGAGCTTA 58.659 40.000 0.00 0.00 0.00 3.09
3496 3693 4.588899 TGCTAGGCTGCTGAAAATAAGAA 58.411 39.130 0.00 0.00 0.00 2.52
3679 3876 0.482446 ATTGGGGTGCAGTTTCCAGA 59.518 50.000 0.00 0.00 0.00 3.86
3690 3887 3.608008 GCAGTTTCCAGAAAGCGAAGAAG 60.608 47.826 0.00 0.00 0.00 2.85
3711 3908 1.234821 CGCTGTGAAGTGGGCTTTAA 58.765 50.000 0.00 0.00 34.61 1.52
3782 3979 3.385111 GCTACCTGCAGTTGGAGTATACT 59.615 47.826 13.81 4.68 42.31 2.12
3783 3980 4.500035 GCTACCTGCAGTTGGAGTATACTC 60.500 50.000 22.47 22.47 42.31 2.59
3804 4001 3.188667 TCGATAGCTTACACGATAGGCAG 59.811 47.826 0.00 0.00 43.77 4.85
3839 4036 2.480037 TCAGTTTCGCTGCACATACTTG 59.520 45.455 0.00 0.00 44.66 3.16
3877 4074 2.154462 GTCCTTGACTTGTGGACATGG 58.846 52.381 6.52 0.00 46.79 3.66
3967 4164 6.422400 GGTGAAGTTAGAACAGAGTTTGAGAG 59.578 42.308 0.00 0.00 0.00 3.20
4083 4286 7.363268 CCTCAGTTGCTTTATTGCTTCCTTTAT 60.363 37.037 0.00 0.00 0.00 1.40
4084 4287 8.574251 TCAGTTGCTTTATTGCTTCCTTTATA 57.426 30.769 0.00 0.00 0.00 0.98
4085 4288 8.458843 TCAGTTGCTTTATTGCTTCCTTTATAC 58.541 33.333 0.00 0.00 0.00 1.47
4086 4289 8.462016 CAGTTGCTTTATTGCTTCCTTTATACT 58.538 33.333 0.00 0.00 0.00 2.12
4087 4290 8.678199 AGTTGCTTTATTGCTTCCTTTATACTC 58.322 33.333 0.00 0.00 0.00 2.59
4088 4291 7.568199 TGCTTTATTGCTTCCTTTATACTCC 57.432 36.000 0.00 0.00 0.00 3.85
4089 4292 6.546034 TGCTTTATTGCTTCCTTTATACTCCC 59.454 38.462 0.00 0.00 0.00 4.30
4090 4293 6.773200 GCTTTATTGCTTCCTTTATACTCCCT 59.227 38.462 0.00 0.00 0.00 4.20
4091 4294 7.041030 GCTTTATTGCTTCCTTTATACTCCCTC 60.041 40.741 0.00 0.00 0.00 4.30
4092 4295 4.772886 TTGCTTCCTTTATACTCCCTCC 57.227 45.455 0.00 0.00 0.00 4.30
4093 4296 2.698797 TGCTTCCTTTATACTCCCTCCG 59.301 50.000 0.00 0.00 0.00 4.63
4094 4297 2.699321 GCTTCCTTTATACTCCCTCCGT 59.301 50.000 0.00 0.00 0.00 4.69
4095 4298 3.134262 GCTTCCTTTATACTCCCTCCGTT 59.866 47.826 0.00 0.00 0.00 4.44
4096 4299 4.383880 GCTTCCTTTATACTCCCTCCGTTT 60.384 45.833 0.00 0.00 0.00 3.60
4097 4300 4.748277 TCCTTTATACTCCCTCCGTTTG 57.252 45.455 0.00 0.00 0.00 2.93
4098 4301 3.453353 TCCTTTATACTCCCTCCGTTTGG 59.547 47.826 0.00 0.00 0.00 3.28
4099 4302 3.453353 CCTTTATACTCCCTCCGTTTGGA 59.547 47.826 0.00 0.00 43.88 3.53
4100 4303 4.080751 CCTTTATACTCCCTCCGTTTGGAA 60.081 45.833 0.00 0.00 45.87 3.53
4101 4304 5.397559 CCTTTATACTCCCTCCGTTTGGAAT 60.398 44.000 0.00 0.00 45.87 3.01
4102 4305 5.703730 TTATACTCCCTCCGTTTGGAATT 57.296 39.130 0.00 0.00 45.87 2.17
4103 4306 6.811634 TTATACTCCCTCCGTTTGGAATTA 57.188 37.500 0.00 0.00 45.87 1.40
4104 4307 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
4105 4308 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
4106 4309 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
4107 4310 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
4108 4311 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
4109 4312 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
4110 4313 4.324267 CCTCCGTTTGGAATTACTTGTCT 58.676 43.478 0.00 0.00 45.87 3.41
4111 4314 5.484715 CCTCCGTTTGGAATTACTTGTCTA 58.515 41.667 0.00 0.00 45.87 2.59
4112 4315 5.581085 CCTCCGTTTGGAATTACTTGTCTAG 59.419 44.000 0.00 0.00 45.87 2.43
4113 4316 5.484715 TCCGTTTGGAATTACTTGTCTAGG 58.515 41.667 0.00 0.00 42.85 3.02
4114 4317 5.246656 TCCGTTTGGAATTACTTGTCTAGGA 59.753 40.000 0.00 0.00 42.85 2.94
4115 4318 5.935789 CCGTTTGGAATTACTTGTCTAGGAA 59.064 40.000 0.00 0.00 37.49 3.36
4116 4319 6.428771 CCGTTTGGAATTACTTGTCTAGGAAA 59.571 38.462 0.00 0.00 37.49 3.13
4117 4320 7.120726 CCGTTTGGAATTACTTGTCTAGGAAAT 59.879 37.037 0.00 0.00 37.49 2.17
4118 4321 7.962918 CGTTTGGAATTACTTGTCTAGGAAATG 59.037 37.037 0.00 0.00 28.13 2.32
4119 4322 7.938140 TTGGAATTACTTGTCTAGGAAATGG 57.062 36.000 0.00 0.00 28.13 3.16
4120 4323 7.265599 TGGAATTACTTGTCTAGGAAATGGA 57.734 36.000 0.00 0.00 28.13 3.41
4121 4324 7.872138 TGGAATTACTTGTCTAGGAAATGGAT 58.128 34.615 0.00 0.00 28.13 3.41
4122 4325 7.775093 TGGAATTACTTGTCTAGGAAATGGATG 59.225 37.037 0.00 0.00 28.13 3.51
4123 4326 7.775561 GGAATTACTTGTCTAGGAAATGGATGT 59.224 37.037 0.00 0.00 28.13 3.06
4124 4327 9.832445 GAATTACTTGTCTAGGAAATGGATGTA 57.168 33.333 0.00 0.00 28.13 2.29
4127 4330 7.682787 ACTTGTCTAGGAAATGGATGTATCT 57.317 36.000 0.00 0.00 0.00 1.98
4128 4331 8.783660 ACTTGTCTAGGAAATGGATGTATCTA 57.216 34.615 0.00 0.00 0.00 1.98
4129 4332 8.865090 ACTTGTCTAGGAAATGGATGTATCTAG 58.135 37.037 0.00 0.00 0.00 2.43
4130 4333 9.083422 CTTGTCTAGGAAATGGATGTATCTAGA 57.917 37.037 0.00 0.00 32.17 2.43
4131 4334 9.434275 TTGTCTAGGAAATGGATGTATCTAGAA 57.566 33.333 0.00 0.00 35.16 2.10
4132 4335 8.861086 TGTCTAGGAAATGGATGTATCTAGAAC 58.139 37.037 0.00 0.00 35.16 3.01
4133 4336 9.084533 GTCTAGGAAATGGATGTATCTAGAACT 57.915 37.037 0.00 0.00 35.16 3.01
4162 4365 9.698309 AATACTCTAGATACATCCATTTCAACG 57.302 33.333 0.00 0.00 0.00 4.10
4163 4366 7.348080 ACTCTAGATACATCCATTTCAACGA 57.652 36.000 0.00 0.00 0.00 3.85
4164 4367 7.203910 ACTCTAGATACATCCATTTCAACGAC 58.796 38.462 0.00 0.00 0.00 4.34
4165 4368 7.107639 TCTAGATACATCCATTTCAACGACA 57.892 36.000 0.00 0.00 0.00 4.35
4166 4369 7.552459 TCTAGATACATCCATTTCAACGACAA 58.448 34.615 0.00 0.00 0.00 3.18
4167 4370 6.668541 AGATACATCCATTTCAACGACAAG 57.331 37.500 0.00 0.00 0.00 3.16
4168 4371 6.173339 AGATACATCCATTTCAACGACAAGT 58.827 36.000 0.00 0.00 0.00 3.16
4169 4372 7.327975 AGATACATCCATTTCAACGACAAGTA 58.672 34.615 0.00 0.00 0.00 2.24
4170 4373 7.822334 AGATACATCCATTTCAACGACAAGTAA 59.178 33.333 0.00 0.00 0.00 2.24
4171 4374 6.817765 ACATCCATTTCAACGACAAGTAAT 57.182 33.333 0.00 0.00 0.00 1.89
4172 4375 7.214467 ACATCCATTTCAACGACAAGTAATT 57.786 32.000 0.00 0.00 0.00 1.40
4173 4376 7.305474 ACATCCATTTCAACGACAAGTAATTC 58.695 34.615 0.00 0.00 0.00 2.17
4174 4377 6.249035 TCCATTTCAACGACAAGTAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
4175 4378 5.086058 CCATTTCAACGACAAGTAATTCCG 58.914 41.667 0.00 0.00 0.00 4.30
4176 4379 5.106869 CCATTTCAACGACAAGTAATTCCGA 60.107 40.000 0.00 0.00 0.00 4.55
4177 4380 5.987777 TTTCAACGACAAGTAATTCCGAA 57.012 34.783 0.00 0.00 0.00 4.30
4178 4381 4.977741 TCAACGACAAGTAATTCCGAAC 57.022 40.909 0.00 0.00 0.00 3.95
4179 4382 3.426191 TCAACGACAAGTAATTCCGAACG 59.574 43.478 0.00 0.00 0.00 3.95
4180 4383 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
4181 4384 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
4182 4385 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4183 4386 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4184 4387 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4185 4388 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4186 4389 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4229 4432 4.458989 AGTTGGCATAATGTTACACACAGG 59.541 41.667 0.00 0.00 39.40 4.00
4230 4433 4.027674 TGGCATAATGTTACACACAGGT 57.972 40.909 0.00 0.00 39.40 4.00
4231 4434 5.167303 TGGCATAATGTTACACACAGGTA 57.833 39.130 0.00 0.00 39.40 3.08
4232 4435 4.938832 TGGCATAATGTTACACACAGGTAC 59.061 41.667 0.00 0.00 39.40 3.34
4233 4436 5.183228 GGCATAATGTTACACACAGGTACT 58.817 41.667 0.00 0.00 39.40 2.73
4234 4437 5.293569 GGCATAATGTTACACACAGGTACTC 59.706 44.000 0.00 0.00 39.40 2.59
4235 4438 5.293569 GCATAATGTTACACACAGGTACTCC 59.706 44.000 0.00 0.00 39.40 3.85
4236 4439 3.975168 ATGTTACACACAGGTACTCCC 57.025 47.619 0.00 0.00 39.40 4.30
4238 4441 2.895404 TGTTACACACAGGTACTCCCTC 59.105 50.000 0.00 0.00 43.86 4.30
4239 4442 2.226962 TACACACAGGTACTCCCTCC 57.773 55.000 0.00 0.00 43.86 4.30
4240 4443 0.487772 ACACACAGGTACTCCCTCCT 59.512 55.000 0.00 0.00 43.86 3.69
4241 4444 1.132817 ACACACAGGTACTCCCTCCTT 60.133 52.381 0.00 0.00 43.86 3.36
4242 4445 1.978580 CACACAGGTACTCCCTCCTTT 59.021 52.381 0.00 0.00 43.86 3.11
4243 4446 2.028020 CACACAGGTACTCCCTCCTTTC 60.028 54.545 0.00 0.00 43.86 2.62
4244 4447 1.204941 CACAGGTACTCCCTCCTTTCG 59.795 57.143 0.00 0.00 43.86 3.46
4245 4448 0.824759 CAGGTACTCCCTCCTTTCGG 59.175 60.000 0.00 0.00 43.86 4.30
4246 4449 0.708802 AGGTACTCCCTCCTTTCGGA 59.291 55.000 0.00 0.00 40.71 4.55
4247 4450 1.078324 AGGTACTCCCTCCTTTCGGAA 59.922 52.381 0.00 0.00 40.71 4.30
4248 4451 2.117051 GGTACTCCCTCCTTTCGGAAT 58.883 52.381 0.00 0.00 39.29 3.01
4249 4452 2.504585 GGTACTCCCTCCTTTCGGAATT 59.495 50.000 0.00 0.00 39.29 2.17
4250 4453 3.708121 GGTACTCCCTCCTTTCGGAATTA 59.292 47.826 0.00 0.00 39.29 1.40
4251 4454 3.908643 ACTCCCTCCTTTCGGAATTAC 57.091 47.619 0.00 0.00 39.29 1.89
4252 4455 3.451890 ACTCCCTCCTTTCGGAATTACT 58.548 45.455 0.00 0.00 39.29 2.24
4253 4456 3.844804 ACTCCCTCCTTTCGGAATTACTT 59.155 43.478 0.00 0.00 39.29 2.24
4254 4457 4.192317 CTCCCTCCTTTCGGAATTACTTG 58.808 47.826 0.00 0.00 39.29 3.16
4255 4458 3.585732 TCCCTCCTTTCGGAATTACTTGT 59.414 43.478 0.00 0.00 39.29 3.16
4256 4459 3.939592 CCCTCCTTTCGGAATTACTTGTC 59.060 47.826 0.00 0.00 39.29 3.18
4257 4460 3.617263 CCTCCTTTCGGAATTACTTGTCG 59.383 47.826 0.00 0.00 39.29 4.35
4258 4461 2.997986 TCCTTTCGGAATTACTTGTCGC 59.002 45.455 0.00 0.00 36.03 5.19
4259 4462 2.222729 CCTTTCGGAATTACTTGTCGCG 60.223 50.000 0.00 0.00 0.00 5.87
4260 4463 2.350899 TTCGGAATTACTTGTCGCGA 57.649 45.000 3.71 3.71 0.00 5.87
4261 4464 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
4262 4465 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
4263 4466 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
4264 4467 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
4265 4468 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
4266 4469 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
4267 4470 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
4268 4471 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
4269 4472 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
4270 4473 1.135689 ACTTGTCGCGAAAATGGATGC 60.136 47.619 13.05 0.00 0.00 3.91
4271 4474 0.877743 TTGTCGCGAAAATGGATGCA 59.122 45.000 12.06 0.00 0.00 3.96
4272 4475 1.093972 TGTCGCGAAAATGGATGCAT 58.906 45.000 12.06 0.00 0.00 3.96
4273 4476 1.063912 TGTCGCGAAAATGGATGCATC 59.936 47.619 18.81 18.81 0.00 3.91
4274 4477 1.331756 GTCGCGAAAATGGATGCATCT 59.668 47.619 25.28 5.84 0.00 2.90
4275 4478 2.543848 GTCGCGAAAATGGATGCATCTA 59.456 45.455 25.28 20.79 0.00 1.98
4276 4479 2.802247 TCGCGAAAATGGATGCATCTAG 59.198 45.455 25.28 9.06 0.00 2.43
4277 4480 2.802247 CGCGAAAATGGATGCATCTAGA 59.198 45.455 25.28 10.86 0.00 2.43
4278 4481 3.363378 CGCGAAAATGGATGCATCTAGAC 60.363 47.826 25.28 9.96 0.00 2.59
4279 4482 3.363378 GCGAAAATGGATGCATCTAGACG 60.363 47.826 25.28 21.15 0.00 4.18
4280 4483 3.804325 CGAAAATGGATGCATCTAGACGT 59.196 43.478 25.28 8.02 0.00 4.34
4281 4484 4.982295 CGAAAATGGATGCATCTAGACGTA 59.018 41.667 25.28 5.08 0.00 3.57
4282 4485 5.635280 CGAAAATGGATGCATCTAGACGTAT 59.365 40.000 25.28 1.05 0.00 3.06
4283 4486 6.146184 CGAAAATGGATGCATCTAGACGTATT 59.854 38.462 25.28 7.52 0.00 1.89
4284 4487 7.307396 CGAAAATGGATGCATCTAGACGTATTT 60.307 37.037 25.28 12.91 0.00 1.40
4285 4488 7.807977 AAATGGATGCATCTAGACGTATTTT 57.192 32.000 25.28 12.25 0.00 1.82
4286 4489 8.902540 AAATGGATGCATCTAGACGTATTTTA 57.097 30.769 25.28 0.00 0.00 1.52
4287 4490 8.539770 AATGGATGCATCTAGACGTATTTTAG 57.460 34.615 25.28 0.00 0.00 1.85
4288 4491 7.050970 TGGATGCATCTAGACGTATTTTAGT 57.949 36.000 25.28 0.00 0.00 2.24
4289 4492 7.497595 TGGATGCATCTAGACGTATTTTAGTT 58.502 34.615 25.28 0.00 0.00 2.24
4290 4493 7.652105 TGGATGCATCTAGACGTATTTTAGTTC 59.348 37.037 25.28 3.59 0.00 3.01
4291 4494 7.868415 GGATGCATCTAGACGTATTTTAGTTCT 59.132 37.037 25.28 0.00 0.00 3.01
4292 4495 9.894783 GATGCATCTAGACGTATTTTAGTTCTA 57.105 33.333 19.70 0.00 0.00 2.10
4293 4496 9.900710 ATGCATCTAGACGTATTTTAGTTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
4294 4497 9.117183 TGCATCTAGACGTATTTTAGTTCTAGA 57.883 33.333 8.64 8.64 38.94 2.43
4310 4513 9.967346 TTAGTTCTAGATACAATCATTTCCGAG 57.033 33.333 0.00 0.00 0.00 4.63
4311 4514 8.239038 AGTTCTAGATACAATCATTTCCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
4312 4515 8.138712 AGTTCTAGATACAATCATTTCCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
4313 4516 7.582667 TCTAGATACAATCATTTCCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
4314 4517 8.007405 TCTAGATACAATCATTTCCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
4315 4518 8.138074 TCTAGATACAATCATTTCCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
4316 4519 6.644347 AGATACAATCATTTCCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
4317 4520 7.782049 AGATACAATCATTTCCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
4318 4521 8.258007 AGATACAATCATTTCCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
4319 4522 8.964476 ATACAATCATTTCCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
4320 4523 7.687941 ACAATCATTTCCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
4321 4524 8.110860 ACAATCATTTCCGAGACAAGTAATTT 57.889 30.769 0.00 0.00 0.00 1.82
4322 4525 8.237267 ACAATCATTTCCGAGACAAGTAATTTC 58.763 33.333 0.00 0.00 0.00 2.17
4323 4526 6.403333 TCATTTCCGAGACAAGTAATTTCG 57.597 37.500 0.00 0.00 0.00 3.46
4324 4527 6.160684 TCATTTCCGAGACAAGTAATTTCGA 58.839 36.000 0.00 0.00 33.38 3.71
4325 4528 6.647481 TCATTTCCGAGACAAGTAATTTCGAA 59.353 34.615 0.00 0.00 33.38 3.71
4326 4529 5.834239 TTCCGAGACAAGTAATTTCGAAC 57.166 39.130 0.00 0.00 33.38 3.95
4327 4530 3.916172 TCCGAGACAAGTAATTTCGAACG 59.084 43.478 0.00 0.00 33.38 3.95
4328 4531 3.060363 CCGAGACAAGTAATTTCGAACGG 59.940 47.826 0.00 0.00 33.38 4.44
4329 4532 3.916172 CGAGACAAGTAATTTCGAACGGA 59.084 43.478 0.00 0.00 33.38 4.69
4330 4533 4.030306 CGAGACAAGTAATTTCGAACGGAG 59.970 45.833 0.00 0.00 33.38 4.63
4331 4534 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
4332 4535 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
4333 4536 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
4339 4542 2.787473 TTCGAACGGAGGGAGTAGTA 57.213 50.000 0.00 0.00 0.00 1.82
4375 4579 2.502295 TGCATGTCATACAGCAACACA 58.498 42.857 0.00 0.00 32.32 3.72
4470 4674 0.676782 GTATTTGCCGCTCCACCTGT 60.677 55.000 0.00 0.00 0.00 4.00
4492 4696 2.158813 ACGTTGGTGACATTGGAAGAGT 60.159 45.455 0.00 0.00 42.32 3.24
4493 4697 3.070446 ACGTTGGTGACATTGGAAGAGTA 59.930 43.478 0.00 0.00 42.32 2.59
4609 4815 2.957402 TGTCCTGAGCTGAATGGTTT 57.043 45.000 0.00 0.00 0.00 3.27
4648 4854 6.537355 TGTCTTCATTCTTCACCTCTTCAAT 58.463 36.000 0.00 0.00 0.00 2.57
4686 4892 6.655003 CCACTGTTGAGATTGTATGTAAACCT 59.345 38.462 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.837272 TATGCACTTGGAGGTAGGGC 59.163 55.000 0.00 0.00 42.43 5.19
27 28 2.505819 ACTTATGCACTTGGAGGTAGGG 59.494 50.000 0.00 0.00 0.00 3.53
38 39 3.675228 CGGAAAGACGGTACTTATGCACT 60.675 47.826 0.00 0.00 0.00 4.40
41 42 3.114065 CTCGGAAAGACGGTACTTATGC 58.886 50.000 0.00 0.00 0.00 3.14
50 51 2.479275 GGTTTTTCTCTCGGAAAGACGG 59.521 50.000 0.00 0.00 44.77 4.79
57 58 4.350245 TCTCTATGGGTTTTTCTCTCGGA 58.650 43.478 0.00 0.00 0.00 4.55
59 60 5.064071 GCTTTCTCTATGGGTTTTTCTCTCG 59.936 44.000 0.00 0.00 0.00 4.04
64 65 9.358872 CAATAAAGCTTTCTCTATGGGTTTTTC 57.641 33.333 16.57 0.00 32.78 2.29
71 72 5.741388 ACGCAATAAAGCTTTCTCTATGG 57.259 39.130 16.57 2.18 0.00 2.74
72 73 9.000018 GTAAAACGCAATAAAGCTTTCTCTATG 58.000 33.333 16.57 9.67 0.00 2.23
73 74 7.903431 CGTAAAACGCAATAAAGCTTTCTCTAT 59.097 33.333 16.57 0.00 33.65 1.98
74 75 7.116662 TCGTAAAACGCAATAAAGCTTTCTCTA 59.883 33.333 16.57 0.00 42.21 2.43
83 84 6.023379 TCCGTATCGTAAAACGCAATAAAG 57.977 37.500 0.00 0.00 42.21 1.85
86 87 3.486841 GCTCCGTATCGTAAAACGCAATA 59.513 43.478 0.00 0.00 42.21 1.90
89 90 1.270971 GCTCCGTATCGTAAAACGCA 58.729 50.000 0.00 0.00 42.21 5.24
90 91 0.573987 GGCTCCGTATCGTAAAACGC 59.426 55.000 0.00 0.00 42.21 4.84
98 99 2.254651 GGTAGCGGCTCCGTATCG 59.745 66.667 5.39 0.00 42.09 2.92
113 114 3.181429 ACCAATGAAGAACATGAGGTGGT 60.181 43.478 0.00 0.00 42.54 4.16
114 115 3.424703 ACCAATGAAGAACATGAGGTGG 58.575 45.455 0.00 0.00 42.54 4.61
121 122 4.858850 TCATGCCTACCAATGAAGAACAT 58.141 39.130 0.00 0.00 41.45 2.71
140 141 3.007398 GCCCGGAATAGACTTCAGATCAT 59.993 47.826 0.73 0.00 0.00 2.45
273 274 0.172803 ACGACCTCGAAAGGAATCCG 59.827 55.000 0.78 0.00 46.67 4.18
280 281 3.741344 ACAGAATTCAACGACCTCGAAAG 59.259 43.478 8.44 0.00 43.02 2.62
284 285 4.446385 TGTTTACAGAATTCAACGACCTCG 59.554 41.667 8.44 0.00 46.33 4.63
285 286 5.235616 TGTGTTTACAGAATTCAACGACCTC 59.764 40.000 8.44 0.00 31.91 3.85
292 293 7.556275 AGAGAAGGTTGTGTTTACAGAATTCAA 59.444 33.333 8.44 0.00 38.23 2.69
300 301 9.321562 CTAAAGTTAGAGAAGGTTGTGTTTACA 57.678 33.333 0.00 0.00 32.47 2.41
411 412 6.970484 ACGACATTCTGAGCACTTTTATTTT 58.030 32.000 0.00 0.00 0.00 1.82
414 415 7.667043 TTTACGACATTCTGAGCACTTTTAT 57.333 32.000 0.00 0.00 0.00 1.40
475 476 1.880221 CGGGTGTGTTCAGTGCCAATA 60.880 52.381 0.00 0.00 0.00 1.90
476 477 1.172180 CGGGTGTGTTCAGTGCCAAT 61.172 55.000 0.00 0.00 0.00 3.16
512 513 2.571212 CTGCTACCTTGTGGACAACAA 58.429 47.619 0.00 0.00 46.66 2.83
527 528 3.217017 CCTAGACGCGCCCTGCTA 61.217 66.667 5.73 0.00 43.27 3.49
612 614 8.912988 TGAACTAAGAACTGGACATGAATTTTT 58.087 29.630 0.00 0.00 0.00 1.94
619 621 3.679980 CCGTGAACTAAGAACTGGACATG 59.320 47.826 0.00 0.00 0.00 3.21
622 624 3.005578 AGACCGTGAACTAAGAACTGGAC 59.994 47.826 0.00 0.00 0.00 4.02
631 633 1.968493 AGGAGCAAGACCGTGAACTAA 59.032 47.619 0.00 0.00 0.00 2.24
635 637 1.919240 TCTAGGAGCAAGACCGTGAA 58.081 50.000 0.00 0.00 0.00 3.18
638 640 1.948145 CGTATCTAGGAGCAAGACCGT 59.052 52.381 0.00 0.00 0.00 4.83
712 714 8.786898 CAATGGATGATTCATATACCGAAAAGT 58.213 33.333 0.00 0.00 0.00 2.66
715 717 7.230747 ACCAATGGATGATTCATATACCGAAA 58.769 34.615 6.16 0.00 0.00 3.46
716 718 6.778821 ACCAATGGATGATTCATATACCGAA 58.221 36.000 6.16 0.00 0.00 4.30
718 720 5.586243 GGACCAATGGATGATTCATATACCG 59.414 44.000 6.16 0.00 0.00 4.02
724 726 7.071273 ACTAATTGGACCAATGGATGATTCAT 58.929 34.615 20.50 0.00 34.04 2.57
728 730 7.738437 AAAACTAATTGGACCAATGGATGAT 57.262 32.000 20.50 6.29 34.04 2.45
747 749 7.690952 TGTACAAACCACTAGAACAAAAACT 57.309 32.000 0.00 0.00 0.00 2.66
760 762 4.497473 TTGCAAGCTATGTACAAACCAC 57.503 40.909 0.00 0.00 0.00 4.16
767 769 3.838550 CGACGTTTTTGCAAGCTATGTAC 59.161 43.478 0.00 0.00 0.00 2.90
785 787 3.550233 CCCTCTGTCCATAACATACGACG 60.550 52.174 0.00 0.00 37.23 5.12
793 795 5.447757 AGTAGTACTCCCTCTGTCCATAAC 58.552 45.833 0.00 0.00 0.00 1.89
800 802 7.093421 GGTTGAAATAAGTAGTACTCCCTCTGT 60.093 40.741 2.58 0.00 0.00 3.41
801 803 7.093465 TGGTTGAAATAAGTAGTACTCCCTCTG 60.093 40.741 2.58 0.00 0.00 3.35
802 804 6.958192 TGGTTGAAATAAGTAGTACTCCCTCT 59.042 38.462 2.58 0.00 0.00 3.69
873 876 5.796424 ATTATGATTGAATGTTGGGAGGC 57.204 39.130 0.00 0.00 0.00 4.70
904 909 6.607970 TGATTGAAGGCTATTCATCCTCAAT 58.392 36.000 6.52 6.52 35.23 2.57
930 935 8.854237 AGGCTACCCCTCAATAAAATAAAATT 57.146 30.769 0.00 0.00 41.21 1.82
936 941 5.044105 ACTGAAGGCTACCCCTCAATAAAAT 60.044 40.000 0.00 0.00 45.62 1.82
941 946 1.840635 GACTGAAGGCTACCCCTCAAT 59.159 52.381 0.00 0.00 45.62 2.57
974 1002 4.787551 TGAAGGCTACAGGTTTCTCAAAA 58.212 39.130 0.00 0.00 0.00 2.44
975 1003 4.431416 TGAAGGCTACAGGTTTCTCAAA 57.569 40.909 0.00 0.00 0.00 2.69
976 1004 4.640771 ATGAAGGCTACAGGTTTCTCAA 57.359 40.909 0.00 0.00 0.00 3.02
977 1005 4.041567 TGAATGAAGGCTACAGGTTTCTCA 59.958 41.667 0.00 0.00 0.00 3.27
980 1008 4.943705 TCATGAATGAAGGCTACAGGTTTC 59.056 41.667 0.00 0.00 33.08 2.78
997 1025 4.289410 TCTCCTTCCAAGTTCCATCATGAA 59.711 41.667 0.00 0.00 0.00 2.57
1084 1117 2.032178 GCGTATTTGAGCCCATGACTTC 59.968 50.000 0.00 0.00 0.00 3.01
1225 1263 2.329399 GGAGGGAGGGGAGGAGAGT 61.329 68.421 0.00 0.00 0.00 3.24
1226 1264 2.612251 GGAGGGAGGGGAGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
1227 1265 3.036959 GGGAGGGAGGGGAGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
1231 1269 4.179599 GGAGGGGAGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1234 1272 3.837213 GATCGGAGGGGAGGGAGGG 62.837 73.684 0.00 0.00 0.00 4.30
1236 1274 2.203714 GGATCGGAGGGGAGGGAG 60.204 72.222 0.00 0.00 0.00 4.30
1237 1275 2.642776 TTGGATCGGAGGGGAGGGA 61.643 63.158 0.00 0.00 0.00 4.20
1563 1604 1.755393 AAGAAGTCGGGCAAGTCGGT 61.755 55.000 0.00 0.00 0.00 4.69
1699 1740 1.950973 GAACCTGAGGGAGTCGAGGC 61.951 65.000 2.38 0.00 36.25 4.70
1710 1751 4.148825 CGGCCCGGAGAACCTGAG 62.149 72.222 0.73 0.00 0.00 3.35
1799 1840 1.611965 GAGGGCTGAGGGCTTGATT 59.388 57.895 0.00 0.00 41.46 2.57
2063 2104 0.532573 AGTGTACCATCTCCAGCGTG 59.467 55.000 0.00 0.00 0.00 5.34
2141 2182 1.210931 CTGCTTCACGTTGGGCATG 59.789 57.895 6.55 0.00 34.12 4.06
2361 2402 1.350351 AGAGCTCACCTTCACAGCAAT 59.650 47.619 17.77 0.00 35.46 3.56
2362 2403 0.761187 AGAGCTCACCTTCACAGCAA 59.239 50.000 17.77 0.00 35.46 3.91
2395 2436 4.648762 ACTGCAGTAACAGCTGATAGAGAT 59.351 41.667 23.35 0.00 41.60 2.75
2396 2437 4.019858 ACTGCAGTAACAGCTGATAGAGA 58.980 43.478 23.35 0.00 41.60 3.10
2408 2449 8.306680 TCTAGACAAATTAACACTGCAGTAAC 57.693 34.615 21.20 0.00 0.00 2.50
2445 2486 4.669206 ATTGTGAACAATTGGACAGCAA 57.331 36.364 10.83 14.26 43.48 3.91
2473 2514 8.749354 ACTATGCATATTCTTCCACGTATCATA 58.251 33.333 6.92 0.00 0.00 2.15
2495 2536 5.791336 TGATGCTTCCGTTCATCTACTAT 57.209 39.130 0.00 0.00 39.69 2.12
2500 2541 2.290260 TGGTTGATGCTTCCGTTCATCT 60.290 45.455 0.00 0.00 39.69 2.90
2514 2555 1.338769 GGAACACGTAGCCTGGTTGAT 60.339 52.381 0.00 0.00 0.00 2.57
2541 2582 3.699038 ACAAGGCAAACACACTGTAATGT 59.301 39.130 0.00 0.00 0.00 2.71
2564 2605 8.032952 TGAACTACATGAATCATTGACTTGTC 57.967 34.615 0.00 0.00 0.00 3.18
2678 2719 5.351465 CCTACTAAGTTACGGTCGAACTACA 59.649 44.000 0.00 0.00 36.10 2.74
2763 2847 3.894427 TGCCACACACATAAGAACCAATT 59.106 39.130 0.00 0.00 0.00 2.32
2768 2852 3.244976 GCATTGCCACACACATAAGAAC 58.755 45.455 0.00 0.00 0.00 3.01
2793 2877 5.414360 TCAGTGACAGATCTTTATCAGCAC 58.586 41.667 0.00 0.00 34.28 4.40
2843 2927 6.698380 AGGGAGTACATAACACAAGTACTTG 58.302 40.000 29.76 29.76 46.01 3.16
2849 2933 3.775316 AGGGAGGGAGTACATAACACAAG 59.225 47.826 0.00 0.00 0.00 3.16
2859 2943 9.156940 ACTTATATTTAGAAAGGGAGGGAGTAC 57.843 37.037 0.00 0.00 0.00 2.73
2860 2944 9.377238 GACTTATATTTAGAAAGGGAGGGAGTA 57.623 37.037 0.00 0.00 0.00 2.59
2861 2945 8.074991 AGACTTATATTTAGAAAGGGAGGGAGT 58.925 37.037 0.00 0.00 0.00 3.85
2862 2946 8.499288 AGACTTATATTTAGAAAGGGAGGGAG 57.501 38.462 0.00 0.00 0.00 4.30
2863 2947 8.871570 AAGACTTATATTTAGAAAGGGAGGGA 57.128 34.615 0.00 0.00 0.00 4.20
2864 2948 9.922477 AAAAGACTTATATTTAGAAAGGGAGGG 57.078 33.333 0.00 0.00 0.00 4.30
2892 2976 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
2893 2977 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
2894 2978 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
2895 2979 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
2896 2980 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
2897 2981 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
2898 2982 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
2899 2983 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
2940 3024 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2941 3025 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2942 3026 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2943 3027 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
2944 3028 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
2946 3030 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
2947 3031 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
2948 3032 8.414003 AGACTATATACGAAGCAAAATGAGTGA 58.586 33.333 0.00 0.00 0.00 3.41
2949 3033 8.483218 CAGACTATATACGAAGCAAAATGAGTG 58.517 37.037 0.00 0.00 0.00 3.51
2950 3034 8.198109 ACAGACTATATACGAAGCAAAATGAGT 58.802 33.333 0.00 0.00 0.00 3.41
2951 3035 8.581057 ACAGACTATATACGAAGCAAAATGAG 57.419 34.615 0.00 0.00 0.00 2.90
2955 3039 9.256477 CCATTACAGACTATATACGAAGCAAAA 57.744 33.333 0.00 0.00 0.00 2.44
2956 3040 8.635328 TCCATTACAGACTATATACGAAGCAAA 58.365 33.333 0.00 0.00 0.00 3.68
2957 3041 8.173542 TCCATTACAGACTATATACGAAGCAA 57.826 34.615 0.00 0.00 0.00 3.91
2958 3042 7.754851 TCCATTACAGACTATATACGAAGCA 57.245 36.000 0.00 0.00 0.00 3.91
2959 3043 9.291664 GAATCCATTACAGACTATATACGAAGC 57.708 37.037 0.00 0.00 0.00 3.86
2962 3046 9.961264 AGAGAATCCATTACAGACTATATACGA 57.039 33.333 0.00 0.00 33.66 3.43
2970 3054 9.660180 GACTTTTTAGAGAATCCATTACAGACT 57.340 33.333 0.00 0.00 33.66 3.24
2971 3055 9.660180 AGACTTTTTAGAGAATCCATTACAGAC 57.340 33.333 0.00 0.00 33.66 3.51
2989 3073 9.955102 ACTCCGTTCCTAAATATAAGACTTTTT 57.045 29.630 0.00 0.00 0.00 1.94
2990 3074 9.379791 CACTCCGTTCCTAAATATAAGACTTTT 57.620 33.333 0.00 0.00 0.00 2.27
2991 3075 8.755977 TCACTCCGTTCCTAAATATAAGACTTT 58.244 33.333 0.00 0.00 0.00 2.66
2992 3076 8.302515 TCACTCCGTTCCTAAATATAAGACTT 57.697 34.615 0.00 0.00 0.00 3.01
2993 3077 7.560626 ACTCACTCCGTTCCTAAATATAAGACT 59.439 37.037 0.00 0.00 0.00 3.24
2994 3078 7.714703 ACTCACTCCGTTCCTAAATATAAGAC 58.285 38.462 0.00 0.00 0.00 3.01
2995 3079 7.893124 ACTCACTCCGTTCCTAAATATAAGA 57.107 36.000 0.00 0.00 0.00 2.10
2996 3080 7.808856 GCTACTCACTCCGTTCCTAAATATAAG 59.191 40.741 0.00 0.00 0.00 1.73
2997 3081 7.286087 TGCTACTCACTCCGTTCCTAAATATAA 59.714 37.037 0.00 0.00 0.00 0.98
2998 3082 6.774170 TGCTACTCACTCCGTTCCTAAATATA 59.226 38.462 0.00 0.00 0.00 0.86
2999 3083 5.597182 TGCTACTCACTCCGTTCCTAAATAT 59.403 40.000 0.00 0.00 0.00 1.28
3000 3084 4.951715 TGCTACTCACTCCGTTCCTAAATA 59.048 41.667 0.00 0.00 0.00 1.40
3001 3085 3.767673 TGCTACTCACTCCGTTCCTAAAT 59.232 43.478 0.00 0.00 0.00 1.40
3002 3086 3.159472 TGCTACTCACTCCGTTCCTAAA 58.841 45.455 0.00 0.00 0.00 1.85
3003 3087 2.799017 TGCTACTCACTCCGTTCCTAA 58.201 47.619 0.00 0.00 0.00 2.69
3004 3088 2.502142 TGCTACTCACTCCGTTCCTA 57.498 50.000 0.00 0.00 0.00 2.94
3005 3089 1.629043 TTGCTACTCACTCCGTTCCT 58.371 50.000 0.00 0.00 0.00 3.36
3006 3090 2.674796 ATTGCTACTCACTCCGTTCC 57.325 50.000 0.00 0.00 0.00 3.62
3007 3091 3.746492 ACAAATTGCTACTCACTCCGTTC 59.254 43.478 0.00 0.00 0.00 3.95
3008 3092 3.740115 ACAAATTGCTACTCACTCCGTT 58.260 40.909 0.00 0.00 0.00 4.44
3009 3093 3.402628 ACAAATTGCTACTCACTCCGT 57.597 42.857 0.00 0.00 0.00 4.69
3010 3094 4.744570 TCTACAAATTGCTACTCACTCCG 58.255 43.478 0.00 0.00 0.00 4.63
3011 3095 6.258947 GGAATCTACAAATTGCTACTCACTCC 59.741 42.308 0.00 0.00 0.00 3.85
3012 3096 6.818644 TGGAATCTACAAATTGCTACTCACTC 59.181 38.462 0.00 0.00 0.00 3.51
3013 3097 6.711277 TGGAATCTACAAATTGCTACTCACT 58.289 36.000 0.00 0.00 0.00 3.41
3014 3098 6.037610 CCTGGAATCTACAAATTGCTACTCAC 59.962 42.308 0.00 0.00 0.00 3.51
3015 3099 6.070251 TCCTGGAATCTACAAATTGCTACTCA 60.070 38.462 0.00 0.00 0.00 3.41
3016 3100 6.349300 TCCTGGAATCTACAAATTGCTACTC 58.651 40.000 0.00 0.00 0.00 2.59
3017 3101 6.313519 TCCTGGAATCTACAAATTGCTACT 57.686 37.500 0.00 0.00 0.00 2.57
3043 3127 1.541233 CCGACTCAAGCAACTCCTTGT 60.541 52.381 2.31 0.00 42.16 3.16
3044 3128 1.151668 CCGACTCAAGCAACTCCTTG 58.848 55.000 0.00 0.00 42.73 3.61
3046 3130 1.048601 TTCCGACTCAAGCAACTCCT 58.951 50.000 0.00 0.00 0.00 3.69
3047 3131 1.149148 GTTCCGACTCAAGCAACTCC 58.851 55.000 0.00 0.00 0.00 3.85
3048 3132 1.865865 TGTTCCGACTCAAGCAACTC 58.134 50.000 0.00 0.00 0.00 3.01
3054 3251 3.608506 CACTCGTTATGTTCCGACTCAAG 59.391 47.826 0.00 0.00 0.00 3.02
3062 3259 4.062991 ACTTCAACCACTCGTTATGTTCC 58.937 43.478 0.00 0.00 31.77 3.62
3072 3269 0.582005 GTGCGTGACTTCAACCACTC 59.418 55.000 0.00 0.00 0.00 3.51
3088 3285 5.514204 TCGAAATAGAAGCGTTAAGTAGTGC 59.486 40.000 0.00 0.00 0.00 4.40
3100 3297 2.005971 ACCCACGTCGAAATAGAAGC 57.994 50.000 0.00 0.00 0.00 3.86
3165 3362 5.188555 AGGTAAGAACTCAATCTGCAGATGA 59.811 40.000 29.34 23.96 34.49 2.92
3207 3404 6.446318 CAGCTAACAACTGCAAAGGAATAAA 58.554 36.000 0.00 0.00 0.00 1.40
3251 3448 5.997129 CCCTTCAAATGTAATTGGCAACTTT 59.003 36.000 0.00 0.00 36.10 2.66
3299 3496 3.510388 TCTGATTCACGCGAGAAATCT 57.490 42.857 22.33 6.82 37.54 2.40
3450 3647 9.116067 GCATGAAGTAGGGTGTGTTAATAATAA 57.884 33.333 0.00 0.00 0.00 1.40
3451 3648 8.491134 AGCATGAAGTAGGGTGTGTTAATAATA 58.509 33.333 0.00 0.00 0.00 0.98
3452 3649 7.346471 AGCATGAAGTAGGGTGTGTTAATAAT 58.654 34.615 0.00 0.00 0.00 1.28
3453 3650 6.717289 AGCATGAAGTAGGGTGTGTTAATAA 58.283 36.000 0.00 0.00 0.00 1.40
3454 3651 6.308015 AGCATGAAGTAGGGTGTGTTAATA 57.692 37.500 0.00 0.00 0.00 0.98
3455 3652 5.179452 AGCATGAAGTAGGGTGTGTTAAT 57.821 39.130 0.00 0.00 0.00 1.40
3456 3653 4.634012 AGCATGAAGTAGGGTGTGTTAA 57.366 40.909 0.00 0.00 0.00 2.01
3457 3654 4.161565 CCTAGCATGAAGTAGGGTGTGTTA 59.838 45.833 0.00 0.00 33.34 2.41
3458 3655 3.055094 CCTAGCATGAAGTAGGGTGTGTT 60.055 47.826 0.00 0.00 33.34 3.32
3466 3663 2.102084 TCAGCAGCCTAGCATGAAGTAG 59.898 50.000 0.00 0.00 36.85 2.57
3496 3693 1.926108 ACTAAAGGACGCCTCTGTCT 58.074 50.000 0.00 0.00 38.91 3.41
3747 3944 2.154462 CAGGTAGCCCTTGTTGAACAG 58.846 52.381 0.00 0.00 39.89 3.16
3782 3979 3.143728 TGCCTATCGTGTAAGCTATCGA 58.856 45.455 0.00 0.00 36.77 3.59
3783 3980 3.188667 TCTGCCTATCGTGTAAGCTATCG 59.811 47.826 0.00 0.00 0.00 2.92
3804 4001 4.035017 CGAAACTGAAAACATGTGGTGTC 58.965 43.478 0.00 0.00 41.14 3.67
3839 4036 5.515797 AGGACAAAAGTTCTACCAAAAGC 57.484 39.130 0.00 0.00 0.00 3.51
3877 4074 4.101790 CAACCATCACGCCCGTGC 62.102 66.667 15.39 0.00 45.04 5.34
4018 4220 5.998363 ACAAGTAAAACTCATCTCCTGTTCC 59.002 40.000 0.00 0.00 0.00 3.62
4083 4286 4.098894 AGTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
4084 4287 2.910977 AGTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
4085 4288 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
4086 4289 3.073356 ACAAGTAATTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
4087 4290 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
4088 4291 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
4089 4292 5.581085 CCTAGACAAGTAATTCCAAACGGAG 59.419 44.000 0.00 0.00 32.88 4.63
4090 4293 5.246656 TCCTAGACAAGTAATTCCAAACGGA 59.753 40.000 0.00 0.00 0.00 4.69
4091 4294 5.484715 TCCTAGACAAGTAATTCCAAACGG 58.515 41.667 0.00 0.00 0.00 4.44
4092 4295 7.429636 TTTCCTAGACAAGTAATTCCAAACG 57.570 36.000 0.00 0.00 0.00 3.60
4093 4296 8.244113 CCATTTCCTAGACAAGTAATTCCAAAC 58.756 37.037 0.00 0.00 0.00 2.93
4094 4297 8.167392 TCCATTTCCTAGACAAGTAATTCCAAA 58.833 33.333 0.00 0.00 0.00 3.28
4095 4298 7.695055 TCCATTTCCTAGACAAGTAATTCCAA 58.305 34.615 0.00 0.00 0.00 3.53
4096 4299 7.265599 TCCATTTCCTAGACAAGTAATTCCA 57.734 36.000 0.00 0.00 0.00 3.53
4097 4300 7.775561 ACATCCATTTCCTAGACAAGTAATTCC 59.224 37.037 0.00 0.00 0.00 3.01
4098 4301 8.738645 ACATCCATTTCCTAGACAAGTAATTC 57.261 34.615 0.00 0.00 0.00 2.17
4101 4304 9.213777 AGATACATCCATTTCCTAGACAAGTAA 57.786 33.333 0.00 0.00 0.00 2.24
4102 4305 8.783660 AGATACATCCATTTCCTAGACAAGTA 57.216 34.615 0.00 0.00 0.00 2.24
4103 4306 7.682787 AGATACATCCATTTCCTAGACAAGT 57.317 36.000 0.00 0.00 0.00 3.16
4104 4307 9.083422 TCTAGATACATCCATTTCCTAGACAAG 57.917 37.037 0.00 0.00 29.82 3.16
4105 4308 9.434275 TTCTAGATACATCCATTTCCTAGACAA 57.566 33.333 0.00 0.00 33.22 3.18
4106 4309 8.861086 GTTCTAGATACATCCATTTCCTAGACA 58.139 37.037 0.00 0.00 33.22 3.41
4107 4310 9.084533 AGTTCTAGATACATCCATTTCCTAGAC 57.915 37.037 0.00 0.00 33.22 2.59
4136 4339 9.698309 CGTTGAAATGGATGTATCTAGAGTATT 57.302 33.333 0.00 0.00 0.00 1.89
4137 4340 9.078990 TCGTTGAAATGGATGTATCTAGAGTAT 57.921 33.333 0.00 0.00 0.00 2.12
4138 4341 8.350722 GTCGTTGAAATGGATGTATCTAGAGTA 58.649 37.037 0.00 0.00 0.00 2.59
4139 4342 7.147897 TGTCGTTGAAATGGATGTATCTAGAGT 60.148 37.037 0.00 0.00 0.00 3.24
4140 4343 7.203218 TGTCGTTGAAATGGATGTATCTAGAG 58.797 38.462 0.00 0.00 0.00 2.43
4141 4344 7.107639 TGTCGTTGAAATGGATGTATCTAGA 57.892 36.000 0.00 0.00 0.00 2.43
4142 4345 7.492669 ACTTGTCGTTGAAATGGATGTATCTAG 59.507 37.037 0.00 0.00 0.00 2.43
4143 4346 7.327975 ACTTGTCGTTGAAATGGATGTATCTA 58.672 34.615 0.00 0.00 0.00 1.98
4144 4347 6.173339 ACTTGTCGTTGAAATGGATGTATCT 58.827 36.000 0.00 0.00 0.00 1.98
4145 4348 6.422776 ACTTGTCGTTGAAATGGATGTATC 57.577 37.500 0.00 0.00 0.00 2.24
4146 4349 7.915293 TTACTTGTCGTTGAAATGGATGTAT 57.085 32.000 0.00 0.00 0.00 2.29
4147 4350 7.915293 ATTACTTGTCGTTGAAATGGATGTA 57.085 32.000 0.00 0.00 0.00 2.29
4148 4351 6.817765 ATTACTTGTCGTTGAAATGGATGT 57.182 33.333 0.00 0.00 0.00 3.06
4149 4352 6.747280 GGAATTACTTGTCGTTGAAATGGATG 59.253 38.462 0.00 0.00 0.00 3.51
4150 4353 6.403200 CGGAATTACTTGTCGTTGAAATGGAT 60.403 38.462 0.00 0.00 0.00 3.41
4151 4354 5.106869 CGGAATTACTTGTCGTTGAAATGGA 60.107 40.000 0.00 0.00 0.00 3.41
4152 4355 5.086058 CGGAATTACTTGTCGTTGAAATGG 58.914 41.667 0.00 0.00 0.00 3.16
4153 4356 5.922546 TCGGAATTACTTGTCGTTGAAATG 58.077 37.500 0.00 0.00 0.00 2.32
4154 4357 6.368213 GTTCGGAATTACTTGTCGTTGAAAT 58.632 36.000 0.00 0.00 0.00 2.17
4155 4358 5.556758 CGTTCGGAATTACTTGTCGTTGAAA 60.557 40.000 0.00 0.00 0.00 2.69
4156 4359 4.084952 CGTTCGGAATTACTTGTCGTTGAA 60.085 41.667 0.00 0.00 0.00 2.69
4157 4360 3.426191 CGTTCGGAATTACTTGTCGTTGA 59.574 43.478 0.00 0.00 0.00 3.18
4158 4361 3.422603 CCGTTCGGAATTACTTGTCGTTG 60.423 47.826 5.19 0.00 0.00 4.10
4159 4362 2.733026 CCGTTCGGAATTACTTGTCGTT 59.267 45.455 5.19 0.00 0.00 3.85
4160 4363 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
4161 4364 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4162 4365 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4163 4366 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4164 4367 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4165 4368 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4166 4369 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4167 4370 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4168 4371 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4169 4372 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4170 4373 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
4171 4374 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
4172 4375 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
4173 4376 1.020437 GTACTACTCCCTCCGTTCGG 58.980 60.000 4.74 4.74 0.00 4.30
4174 4377 1.669779 CTGTACTACTCCCTCCGTTCG 59.330 57.143 0.00 0.00 0.00 3.95
4175 4378 2.720915 ACTGTACTACTCCCTCCGTTC 58.279 52.381 0.00 0.00 0.00 3.95
4176 4379 2.895242 ACTGTACTACTCCCTCCGTT 57.105 50.000 0.00 0.00 0.00 4.44
4177 4380 2.843113 ACTACTGTACTACTCCCTCCGT 59.157 50.000 0.00 0.00 0.00 4.69
4178 4381 3.557228 ACTACTGTACTACTCCCTCCG 57.443 52.381 0.00 0.00 0.00 4.63
4179 4382 5.114764 AGAACTACTGTACTACTCCCTCC 57.885 47.826 0.00 0.00 0.00 4.30
4180 4383 5.743117 TGAGAACTACTGTACTACTCCCTC 58.257 45.833 0.00 0.00 0.00 4.30
4181 4384 5.775813 TGAGAACTACTGTACTACTCCCT 57.224 43.478 0.00 0.00 0.00 4.20
4182 4385 5.709164 TGTTGAGAACTACTGTACTACTCCC 59.291 44.000 0.00 0.00 0.00 4.30
4183 4386 6.430616 ACTGTTGAGAACTACTGTACTACTCC 59.569 42.308 0.00 0.00 34.00 3.85
4184 4387 7.437793 ACTGTTGAGAACTACTGTACTACTC 57.562 40.000 0.00 0.00 34.00 2.59
4185 4388 7.255520 CCAACTGTTGAGAACTACTGTACTACT 60.256 40.741 21.49 0.00 34.43 2.57
4186 4389 6.862090 CCAACTGTTGAGAACTACTGTACTAC 59.138 42.308 21.49 0.00 34.43 2.73
4239 4442 2.664568 TCGCGACAAGTAATTCCGAAAG 59.335 45.455 3.71 0.00 0.00 2.62
4240 4443 2.674954 TCGCGACAAGTAATTCCGAAA 58.325 42.857 3.71 0.00 0.00 3.46
4241 4444 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
4242 4445 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
4243 4446 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
4244 4447 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
4245 4448 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
4246 4449 5.331902 CATCCATTTTCGCGACAAGTAATT 58.668 37.500 9.15 0.00 0.00 1.40
4247 4450 4.730613 GCATCCATTTTCGCGACAAGTAAT 60.731 41.667 9.15 0.42 0.00 1.89
4248 4451 3.425625 GCATCCATTTTCGCGACAAGTAA 60.426 43.478 9.15 0.00 0.00 2.24
4249 4452 2.095213 GCATCCATTTTCGCGACAAGTA 59.905 45.455 9.15 0.00 0.00 2.24
4250 4453 1.135689 GCATCCATTTTCGCGACAAGT 60.136 47.619 9.15 0.42 0.00 3.16
4251 4454 1.135717 TGCATCCATTTTCGCGACAAG 60.136 47.619 9.15 2.84 0.00 3.16
4252 4455 0.877743 TGCATCCATTTTCGCGACAA 59.122 45.000 9.15 9.93 0.00 3.18
4253 4456 1.063912 GATGCATCCATTTTCGCGACA 59.936 47.619 16.23 0.00 0.00 4.35
4254 4457 1.331756 AGATGCATCCATTTTCGCGAC 59.668 47.619 23.06 0.00 0.00 5.19
4255 4458 1.667236 AGATGCATCCATTTTCGCGA 58.333 45.000 23.06 3.71 0.00 5.87
4256 4459 2.802247 TCTAGATGCATCCATTTTCGCG 59.198 45.455 23.06 0.00 0.00 5.87
4257 4460 3.363378 CGTCTAGATGCATCCATTTTCGC 60.363 47.826 23.06 5.10 0.00 4.70
4258 4461 3.804325 ACGTCTAGATGCATCCATTTTCG 59.196 43.478 23.06 19.92 0.00 3.46
4259 4462 7.426929 AATACGTCTAGATGCATCCATTTTC 57.573 36.000 23.06 8.31 0.00 2.29
4260 4463 7.807977 AAATACGTCTAGATGCATCCATTTT 57.192 32.000 23.06 6.85 0.00 1.82
4261 4464 7.807977 AAAATACGTCTAGATGCATCCATTT 57.192 32.000 23.06 13.11 0.00 2.32
4262 4465 8.150945 ACTAAAATACGTCTAGATGCATCCATT 58.849 33.333 23.06 7.62 0.00 3.16
4263 4466 7.671302 ACTAAAATACGTCTAGATGCATCCAT 58.329 34.615 23.06 8.39 0.00 3.41
4264 4467 7.050970 ACTAAAATACGTCTAGATGCATCCA 57.949 36.000 23.06 9.05 0.00 3.41
4265 4468 7.868415 AGAACTAAAATACGTCTAGATGCATCC 59.132 37.037 23.06 6.84 0.00 3.51
4266 4469 8.804688 AGAACTAAAATACGTCTAGATGCATC 57.195 34.615 19.37 19.37 0.00 3.91
4267 4470 9.900710 CTAGAACTAAAATACGTCTAGATGCAT 57.099 33.333 12.04 0.00 0.00 3.96
4268 4471 9.117183 TCTAGAACTAAAATACGTCTAGATGCA 57.883 33.333 12.04 0.00 32.48 3.96
4284 4487 9.967346 CTCGGAAATGATTGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
4285 4488 9.350951 TCTCGGAAATGATTGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
4286 4489 8.138712 GTCTCGGAAATGATTGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
4287 4490 7.921214 TGTCTCGGAAATGATTGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
4288 4491 8.007405 TGTCTCGGAAATGATTGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
4289 4492 7.582667 TGTCTCGGAAATGATTGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
4290 4493 7.923344 ACTTGTCTCGGAAATGATTGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
4291 4494 7.782049 ACTTGTCTCGGAAATGATTGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
4292 4495 6.644347 ACTTGTCTCGGAAATGATTGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
4293 4496 6.910536 ACTTGTCTCGGAAATGATTGTATC 57.089 37.500 0.00 0.00 0.00 2.24
4294 4497 8.964476 ATTACTTGTCTCGGAAATGATTGTAT 57.036 30.769 0.00 0.00 0.00 2.29
4295 4498 8.786826 AATTACTTGTCTCGGAAATGATTGTA 57.213 30.769 0.00 0.00 0.00 2.41
4296 4499 7.687941 AATTACTTGTCTCGGAAATGATTGT 57.312 32.000 0.00 0.00 0.00 2.71
4297 4500 7.426456 CGAAATTACTTGTCTCGGAAATGATTG 59.574 37.037 0.00 0.00 0.00 2.67
4298 4501 7.333423 TCGAAATTACTTGTCTCGGAAATGATT 59.667 33.333 0.00 0.00 0.00 2.57
4299 4502 6.816640 TCGAAATTACTTGTCTCGGAAATGAT 59.183 34.615 0.00 0.00 0.00 2.45
4300 4503 6.160684 TCGAAATTACTTGTCTCGGAAATGA 58.839 36.000 0.00 0.00 0.00 2.57
4301 4504 6.403333 TCGAAATTACTTGTCTCGGAAATG 57.597 37.500 0.00 0.00 0.00 2.32
4302 4505 6.400727 CGTTCGAAATTACTTGTCTCGGAAAT 60.401 38.462 0.00 0.00 0.00 2.17
4303 4506 5.107760 CGTTCGAAATTACTTGTCTCGGAAA 60.108 40.000 0.00 0.00 0.00 3.13
4304 4507 4.383649 CGTTCGAAATTACTTGTCTCGGAA 59.616 41.667 0.00 0.00 0.00 4.30
4305 4508 3.916172 CGTTCGAAATTACTTGTCTCGGA 59.084 43.478 0.00 0.00 0.00 4.55
4306 4509 3.060363 CCGTTCGAAATTACTTGTCTCGG 59.940 47.826 0.00 0.00 0.00 4.63
4307 4510 3.916172 TCCGTTCGAAATTACTTGTCTCG 59.084 43.478 0.00 0.00 0.00 4.04
4308 4511 4.326548 CCTCCGTTCGAAATTACTTGTCTC 59.673 45.833 0.00 0.00 0.00 3.36
4309 4512 4.243270 CCTCCGTTCGAAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
4310 4513 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
4311 4514 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
4312 4515 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
4313 4516 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
4314 4517 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
4315 4518 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
4316 4519 4.019174 ACTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
4317 4520 2.830321 ACTACTCCCTCCGTTCGAAATT 59.170 45.455 0.00 0.00 0.00 1.82
4318 4521 2.454538 ACTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
4319 4522 1.915141 ACTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
4320 4523 2.290260 TGTACTACTCCCTCCGTTCGAA 60.290 50.000 0.00 0.00 0.00 3.71
4321 4524 1.278985 TGTACTACTCCCTCCGTTCGA 59.721 52.381 0.00 0.00 0.00 3.71
4322 4525 1.742761 TGTACTACTCCCTCCGTTCG 58.257 55.000 0.00 0.00 0.00 3.95
4323 4526 4.430908 CAAATGTACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
4324 4527 3.369157 GCAAATGTACTACTCCCTCCGTT 60.369 47.826 0.00 0.00 0.00 4.44
4325 4528 2.167900 GCAAATGTACTACTCCCTCCGT 59.832 50.000 0.00 0.00 0.00 4.69
4326 4529 2.167693 TGCAAATGTACTACTCCCTCCG 59.832 50.000 0.00 0.00 0.00 4.63
4327 4530 3.197983 AGTGCAAATGTACTACTCCCTCC 59.802 47.826 2.12 0.00 39.21 4.30
4328 4531 4.473477 AGTGCAAATGTACTACTCCCTC 57.527 45.455 2.12 0.00 39.21 4.30
4329 4532 6.171213 GTTTAGTGCAAATGTACTACTCCCT 58.829 40.000 10.35 0.00 41.70 4.20
4330 4533 5.935789 TGTTTAGTGCAAATGTACTACTCCC 59.064 40.000 10.35 1.63 41.70 4.30
4331 4534 7.464358 CATGTTTAGTGCAAATGTACTACTCC 58.536 38.462 10.35 3.62 41.70 3.85
4332 4535 6.961554 GCATGTTTAGTGCAAATGTACTACTC 59.038 38.462 10.35 7.70 41.70 2.59
4333 4536 6.842163 GCATGTTTAGTGCAAATGTACTACT 58.158 36.000 10.35 0.43 41.70 2.57
4375 4579 0.111253 AGCAGCAGCCCTTTGTACTT 59.889 50.000 0.00 0.00 43.56 2.24
4409 4613 6.560253 AAATCTTCACAGTAATCACCACAC 57.440 37.500 0.00 0.00 0.00 3.82
4470 4674 3.070446 ACTCTTCCAATGTCACCAACGTA 59.930 43.478 0.00 0.00 0.00 3.57
4492 4696 7.778382 TCAGACACCTAGCATAGACAGTTTATA 59.222 37.037 0.00 0.00 42.77 0.98
4493 4697 6.607600 TCAGACACCTAGCATAGACAGTTTAT 59.392 38.462 0.00 0.00 42.77 1.40
4595 4801 4.681744 GTGTTTTCAAACCATTCAGCTCA 58.318 39.130 0.00 0.00 38.11 4.26
4609 4815 3.942115 TGAAGACATTGACCGTGTTTTCA 59.058 39.130 7.78 7.78 43.84 2.69
4648 4854 1.344953 ACAGTGGAGTCCTGCAACCA 61.345 55.000 11.33 0.00 33.09 3.67
4686 4892 4.043561 TGTTCTTCAACTGGGGCCTAAATA 59.956 41.667 0.84 0.00 33.17 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.