Multiple sequence alignment - TraesCS3B01G325600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G325600 chr3B 100.000 4302 0 0 1 4302 526690029 526685728 0.000000e+00 7945.0
1 TraesCS3B01G325600 chr3B 100.000 383 0 0 4571 4953 526685459 526685077 0.000000e+00 708.0
2 TraesCS3B01G325600 chr3B 78.231 147 27 5 69 212 798334927 798335071 6.830000e-14 89.8
3 TraesCS3B01G325600 chr3B 95.918 49 1 1 2566 2613 29612378 29612330 1.480000e-10 78.7
4 TraesCS3B01G325600 chr3B 94.737 38 2 0 2749 2786 526687169 526687132 5.350000e-05 60.2
5 TraesCS3B01G325600 chr3B 94.737 38 2 0 2861 2898 526687281 526687244 5.350000e-05 60.2
6 TraesCS3B01G325600 chr3A 90.846 2032 100 27 601 2570 520968868 520966861 0.000000e+00 2643.0
7 TraesCS3B01G325600 chr3A 95.519 1562 53 10 2748 4302 520966774 520965223 0.000000e+00 2481.0
8 TraesCS3B01G325600 chr3A 91.667 288 23 1 192 478 520969159 520968872 9.990000e-107 398.0
9 TraesCS3B01G325600 chr3A 92.446 278 11 6 4571 4841 520965196 520964922 6.010000e-104 388.0
10 TraesCS3B01G325600 chr3A 89.423 208 22 0 83 290 521300094 521299887 3.800000e-66 263.0
11 TraesCS3B01G325600 chr3A 89.147 129 10 1 4821 4949 520965163 520965039 1.850000e-34 158.0
12 TraesCS3B01G325600 chr3A 90.667 75 6 1 2628 2702 520966735 520966662 1.130000e-16 99.0
13 TraesCS3B01G325600 chr3A 85.714 98 7 4 2607 2704 520966863 520966773 4.080000e-16 97.1
14 TraesCS3B01G325600 chr3D 91.617 1849 87 24 752 2561 400793792 400791973 0.000000e+00 2494.0
15 TraesCS3B01G325600 chr3D 96.195 1419 50 3 2748 4162 400791875 400790457 0.000000e+00 2318.0
16 TraesCS3B01G325600 chr3D 93.023 387 18 9 4571 4949 400790031 400789646 1.560000e-154 556.0
17 TraesCS3B01G325600 chr3D 95.531 179 5 3 4772 4949 400787425 400787249 2.920000e-72 283.0
18 TraesCS3B01G325600 chr3D 94.972 179 6 3 4772 4949 400788517 400788341 1.360000e-70 278.0
19 TraesCS3B01G325600 chr3D 88.261 230 14 9 4606 4825 400788468 400788242 3.800000e-66 263.0
20 TraesCS3B01G325600 chr3D 88.942 208 17 4 275 478 400794460 400794255 8.230000e-63 252.0
21 TraesCS3B01G325600 chr3D 95.070 142 5 2 4161 4302 400790195 400790056 6.450000e-54 222.0
22 TraesCS3B01G325600 chr3D 90.411 146 14 0 103 248 400937813 400937668 5.060000e-45 193.0
23 TraesCS3B01G325600 chr3D 81.875 160 22 6 70 225 170537950 170537794 1.450000e-25 128.0
24 TraesCS3B01G325600 chr3D 90.909 88 6 2 4693 4779 400789431 400789345 3.130000e-22 117.0
25 TraesCS3B01G325600 chr3D 87.629 97 7 3 2608 2704 400791965 400791874 1.890000e-19 108.0
26 TraesCS3B01G325600 chr3D 92.000 75 5 1 2628 2702 400791836 400791763 2.440000e-18 104.0
27 TraesCS3B01G325600 chr7D 93.333 120 8 0 474 593 277741830 277741949 1.420000e-40 178.0
28 TraesCS3B01G325600 chr7D 92.437 119 9 0 476 594 176125275 176125157 2.370000e-38 171.0
29 TraesCS3B01G325600 chr7D 95.652 46 2 0 2567 2612 579751306 579751351 1.910000e-09 75.0
30 TraesCS3B01G325600 chr2A 93.277 119 8 0 476 594 62368570 62368688 5.100000e-40 176.0
31 TraesCS3B01G325600 chr2A 79.286 140 23 6 90 227 161925117 161924982 5.280000e-15 93.5
32 TraesCS3B01G325600 chr1A 93.220 118 8 0 476 593 1161336 1161219 1.830000e-39 174.0
33 TraesCS3B01G325600 chr1A 81.343 134 19 6 101 231 440793174 440793044 2.440000e-18 104.0
34 TraesCS3B01G325600 chr2D 92.373 118 9 0 477 594 400383637 400383754 8.530000e-38 169.0
35 TraesCS3B01G325600 chr7B 91.057 123 10 1 476 598 513813813 513813934 1.100000e-36 165.0
36 TraesCS3B01G325600 chr7B 88.148 135 13 3 461 594 740997219 740997351 1.850000e-34 158.0
37 TraesCS3B01G325600 chr7B 97.727 44 1 0 2567 2610 349396300 349396343 5.320000e-10 76.8
38 TraesCS3B01G325600 chr4D 90.400 125 11 1 477 601 72256246 72256123 3.970000e-36 163.0
39 TraesCS3B01G325600 chr4D 92.157 51 3 1 2566 2616 359681523 359681474 2.470000e-08 71.3
40 TraesCS3B01G325600 chr5A 89.231 130 12 2 476 604 577433595 577433467 1.430000e-35 161.0
41 TraesCS3B01G325600 chr5A 80.392 153 27 3 70 220 116894439 116894590 4.050000e-21 113.0
42 TraesCS3B01G325600 chr5A 79.730 148 26 4 73 219 491214153 491214297 2.440000e-18 104.0
43 TraesCS3B01G325600 chr4A 83.553 152 22 3 68 217 109850054 109850204 6.690000e-29 139.0
44 TraesCS3B01G325600 chr6A 97.826 46 1 0 2567 2612 451486795 451486750 4.110000e-11 80.5
45 TraesCS3B01G325600 chr5D 92.727 55 3 1 2566 2620 192552277 192552224 1.480000e-10 78.7
46 TraesCS3B01G325600 chr6D 94.000 50 2 1 2566 2615 454580643 454580595 1.910000e-09 75.0
47 TraesCS3B01G325600 chr6B 92.308 52 3 1 2567 2618 275935274 275935324 6.880000e-09 73.1
48 TraesCS3B01G325600 chr2B 92.308 52 2 2 2567 2617 575874945 575874895 6.880000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G325600 chr3B 526685077 526690029 4952 True 2193.350000 7945 97.368500 1 4953 4 chr3B.!!$R2 4952
1 TraesCS3B01G325600 chr3A 520964922 520969159 4237 True 894.871429 2643 90.858000 192 4949 7 chr3A.!!$R2 4757
2 TraesCS3B01G325600 chr3D 400787249 400794460 7211 True 635.909091 2494 92.195364 275 4949 11 chr3D.!!$R3 4674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 594 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
591 596 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.00 46.06 3.85 F
592 597 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 F
778 1091 0.111639 AGACCTAGCCTCCGGAGATC 59.888 60.0 33.39 22.34 0.00 2.75 F
1549 1893 0.182775 ATACAGGATTGGAACGGGGC 59.817 55.0 0.00 0.00 0.00 5.80 F
2898 3282 0.034896 TTCTGGACTCTGAAACGCCC 59.965 55.0 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 2042 0.033228 CCCGCAATTTCAGTTGGCAA 59.967 50.000 0.00 0.00 0.00 4.52 R
2357 2737 1.562475 CCTTCCCGTCCCCTGATTTTA 59.438 52.381 0.00 0.00 0.00 1.52 R
2507 2888 5.193930 TCTCCTATTCCCTACAGACTTCAGA 59.806 44.000 0.00 0.00 0.00 3.27 R
2765 3146 1.149148 GCGTTTCAGAGTCCAGAACC 58.851 55.000 0.00 0.00 0.00 3.62 R
3057 3441 0.686224 CCATTTTGGAGCAAGGCCAA 59.314 50.000 5.01 0.00 40.96 4.52 R
4030 4418 0.462937 TTCGACCATGGCCATAACGG 60.463 55.000 20.30 18.41 38.11 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.282391 GATGGGCCACACACAGCA 60.282 61.111 9.28 0.00 0.00 4.41
18 19 1.679977 GATGGGCCACACACAGCAT 60.680 57.895 9.28 0.00 0.00 3.79
19 20 0.394216 GATGGGCCACACACAGCATA 60.394 55.000 9.28 0.00 0.00 3.14
20 21 0.039472 ATGGGCCACACACAGCATAA 59.961 50.000 9.28 0.00 0.00 1.90
21 22 0.178978 TGGGCCACACACAGCATAAA 60.179 50.000 0.00 0.00 0.00 1.40
22 23 0.965439 GGGCCACACACAGCATAAAA 59.035 50.000 4.39 0.00 0.00 1.52
23 24 1.342819 GGGCCACACACAGCATAAAAA 59.657 47.619 4.39 0.00 0.00 1.94
73 74 9.756571 TCTTTCTTAACTGGAGACTAATACTCT 57.243 33.333 0.00 0.00 35.10 3.24
75 76 9.756571 TTTCTTAACTGGAGACTAATACTCTCT 57.243 33.333 0.00 0.00 35.43 3.10
76 77 8.967664 TCTTAACTGGAGACTAATACTCTCTC 57.032 38.462 0.00 0.00 35.43 3.20
81 82 5.678132 GGAGACTAATACTCTCTCCGTTC 57.322 47.826 0.00 0.00 40.56 3.95
82 83 5.124645 GGAGACTAATACTCTCTCCGTTCA 58.875 45.833 0.00 0.00 40.56 3.18
83 84 5.766174 GGAGACTAATACTCTCTCCGTTCAT 59.234 44.000 0.00 0.00 40.56 2.57
84 85 6.935771 GGAGACTAATACTCTCTCCGTTCATA 59.064 42.308 0.00 0.00 40.56 2.15
85 86 7.444792 GGAGACTAATACTCTCTCCGTTCATAA 59.555 40.741 0.00 0.00 40.56 1.90
86 87 8.749026 AGACTAATACTCTCTCCGTTCATAAA 57.251 34.615 0.00 0.00 0.00 1.40
87 88 9.357161 AGACTAATACTCTCTCCGTTCATAAAT 57.643 33.333 0.00 0.00 0.00 1.40
88 89 9.968870 GACTAATACTCTCTCCGTTCATAAATT 57.031 33.333 0.00 0.00 0.00 1.82
95 96 9.319143 ACTCTCTCCGTTCATAAATTTAAGATG 57.681 33.333 1.21 0.00 0.00 2.90
96 97 9.319143 CTCTCTCCGTTCATAAATTTAAGATGT 57.681 33.333 1.21 0.00 0.00 3.06
97 98 9.667107 TCTCTCCGTTCATAAATTTAAGATGTT 57.333 29.630 1.21 0.00 0.00 2.71
149 150 7.275888 AGACTTGAATGAATAAAAGCACACA 57.724 32.000 0.00 0.00 0.00 3.72
150 151 7.141363 AGACTTGAATGAATAAAAGCACACAC 58.859 34.615 0.00 0.00 0.00 3.82
151 152 7.013655 AGACTTGAATGAATAAAAGCACACACT 59.986 33.333 0.00 0.00 0.00 3.55
152 153 8.165239 ACTTGAATGAATAAAAGCACACACTA 57.835 30.769 0.00 0.00 0.00 2.74
153 154 8.629158 ACTTGAATGAATAAAAGCACACACTAA 58.371 29.630 0.00 0.00 0.00 2.24
154 155 9.462174 CTTGAATGAATAAAAGCACACACTAAA 57.538 29.630 0.00 0.00 0.00 1.85
155 156 9.462174 TTGAATGAATAAAAGCACACACTAAAG 57.538 29.630 0.00 0.00 0.00 1.85
156 157 7.594758 TGAATGAATAAAAGCACACACTAAAGC 59.405 33.333 0.00 0.00 0.00 3.51
157 158 5.448438 TGAATAAAAGCACACACTAAAGCG 58.552 37.500 0.00 0.00 0.00 4.68
158 159 5.008217 TGAATAAAAGCACACACTAAAGCGT 59.992 36.000 0.00 0.00 0.00 5.07
159 160 2.755836 AAAGCACACACTAAAGCGTG 57.244 45.000 0.00 0.00 40.67 5.34
161 162 1.663695 AGCACACACTAAAGCGTGTT 58.336 45.000 1.12 0.00 45.27 3.32
162 163 2.014128 AGCACACACTAAAGCGTGTTT 58.986 42.857 1.12 0.00 45.27 2.83
163 164 3.199677 AGCACACACTAAAGCGTGTTTA 58.800 40.909 1.12 0.00 45.27 2.01
164 165 3.813166 AGCACACACTAAAGCGTGTTTAT 59.187 39.130 1.12 0.00 45.27 1.40
165 166 4.992319 AGCACACACTAAAGCGTGTTTATA 59.008 37.500 1.12 0.00 45.27 0.98
166 167 5.642063 AGCACACACTAAAGCGTGTTTATAT 59.358 36.000 1.12 0.00 45.27 0.86
167 168 6.814644 AGCACACACTAAAGCGTGTTTATATA 59.185 34.615 1.12 0.00 45.27 0.86
168 169 6.898189 GCACACACTAAAGCGTGTTTATATAC 59.102 38.462 1.12 0.00 45.27 1.47
169 170 7.412129 GCACACACTAAAGCGTGTTTATATACA 60.412 37.037 1.12 0.00 45.27 2.29
170 171 8.600625 CACACACTAAAGCGTGTTTATATACAT 58.399 33.333 1.12 0.00 45.27 2.29
171 172 9.806203 ACACACTAAAGCGTGTTTATATACATA 57.194 29.630 0.00 0.00 45.27 2.29
177 178 8.896320 AAAGCGTGTTTATATACATATGACCA 57.104 30.769 10.38 0.00 0.00 4.02
178 179 7.884816 AGCGTGTTTATATACATATGACCAC 57.115 36.000 10.38 3.40 0.00 4.16
179 180 7.438564 AGCGTGTTTATATACATATGACCACA 58.561 34.615 10.38 0.00 0.00 4.17
180 181 7.598869 AGCGTGTTTATATACATATGACCACAG 59.401 37.037 10.38 2.93 0.00 3.66
181 182 7.597369 GCGTGTTTATATACATATGACCACAGA 59.403 37.037 10.38 0.00 0.00 3.41
182 183 9.471084 CGTGTTTATATACATATGACCACAGAA 57.529 33.333 10.38 0.00 0.00 3.02
192 193 8.324163 ACATATGACCACAGAAAAGTTAGAAC 57.676 34.615 10.38 0.00 0.00 3.01
193 194 7.936847 ACATATGACCACAGAAAAGTTAGAACA 59.063 33.333 10.38 0.00 0.00 3.18
194 195 8.950210 CATATGACCACAGAAAAGTTAGAACAT 58.050 33.333 0.00 0.00 0.00 2.71
195 196 7.823745 ATGACCACAGAAAAGTTAGAACATT 57.176 32.000 0.00 0.00 0.00 2.71
196 197 7.639113 TGACCACAGAAAAGTTAGAACATTT 57.361 32.000 0.00 0.00 33.10 2.32
197 198 8.062065 TGACCACAGAAAAGTTAGAACATTTT 57.938 30.769 0.00 1.24 30.87 1.82
198 199 9.179909 TGACCACAGAAAAGTTAGAACATTTTA 57.820 29.630 0.00 0.00 30.87 1.52
264 265 8.925338 TCCTATATGACCTAGAAAGAAAGGAAC 58.075 37.037 0.00 0.00 36.66 3.62
278 279 9.399403 GAAAGAAAGGAACATGAAAGTGTATTC 57.601 33.333 0.00 0.00 0.00 1.75
287 288 7.121974 ACATGAAAGTGTATTCGTTCTCAAG 57.878 36.000 0.00 0.00 31.80 3.02
304 305 4.218417 TCTCAAGCTTTGGCCAAGAATAAC 59.782 41.667 19.48 5.87 39.73 1.89
306 307 4.343526 TCAAGCTTTGGCCAAGAATAACAA 59.656 37.500 19.48 0.00 39.73 2.83
314 315 9.090692 CTTTGGCCAAGAATAACAAGATATTTG 57.909 33.333 19.48 0.00 33.80 2.32
316 317 7.771183 TGGCCAAGAATAACAAGATATTTGAC 58.229 34.615 0.61 0.00 0.00 3.18
360 362 2.457366 AGGCTTAATTATCCCGAGCG 57.543 50.000 1.12 0.00 34.27 5.03
488 493 9.939802 ATAAAATTATATGGTACTCCTTCCGTC 57.060 33.333 0.00 0.00 34.23 4.79
489 494 5.997384 ATTATATGGTACTCCTTCCGTCC 57.003 43.478 0.00 0.00 34.23 4.79
490 495 1.683943 TATGGTACTCCTTCCGTCCG 58.316 55.000 0.00 0.00 34.23 4.79
491 496 1.041447 ATGGTACTCCTTCCGTCCGG 61.041 60.000 0.00 0.00 34.23 5.14
492 497 1.379044 GGTACTCCTTCCGTCCGGA 60.379 63.158 0.00 0.00 43.52 5.14
502 507 2.660189 TCCGTCCGGAATTACTTGTC 57.340 50.000 5.23 0.00 42.05 3.18
503 508 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
504 509 1.997606 CCGTCCGGAATTACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
505 510 1.652124 CGTCCGGAATTACTTGTCACG 59.348 52.381 5.23 0.00 0.00 4.35
506 511 2.669113 CGTCCGGAATTACTTGTCACGA 60.669 50.000 5.23 0.00 0.00 4.35
507 512 3.319755 GTCCGGAATTACTTGTCACGAA 58.680 45.455 5.23 0.00 0.00 3.85
508 513 3.742369 GTCCGGAATTACTTGTCACGAAA 59.258 43.478 5.23 0.00 0.00 3.46
509 514 4.211794 GTCCGGAATTACTTGTCACGAAAA 59.788 41.667 5.23 0.00 0.00 2.29
510 515 4.998672 TCCGGAATTACTTGTCACGAAAAT 59.001 37.500 0.00 0.00 0.00 1.82
511 516 5.086058 CCGGAATTACTTGTCACGAAAATG 58.914 41.667 0.00 0.00 0.00 2.32
512 517 5.106869 CCGGAATTACTTGTCACGAAAATGA 60.107 40.000 0.00 0.00 0.00 2.57
513 518 6.367421 CGGAATTACTTGTCACGAAAATGAA 58.633 36.000 0.00 0.00 0.00 2.57
514 519 7.021196 CGGAATTACTTGTCACGAAAATGAAT 58.979 34.615 0.00 0.00 0.00 2.57
515 520 8.172484 CGGAATTACTTGTCACGAAAATGAATA 58.828 33.333 0.00 0.00 0.00 1.75
516 521 9.490663 GGAATTACTTGTCACGAAAATGAATAG 57.509 33.333 0.00 0.00 0.00 1.73
564 569 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
565 570 6.961360 ACGTCTAGATACATCCATTTCTGA 57.039 37.500 0.00 0.00 0.00 3.27
566 571 6.976088 ACGTCTAGATACATCCATTTCTGAG 58.024 40.000 0.00 0.00 0.00 3.35
567 572 6.773200 ACGTCTAGATACATCCATTTCTGAGA 59.227 38.462 0.00 0.00 0.00 3.27
568 573 7.081349 CGTCTAGATACATCCATTTCTGAGAC 58.919 42.308 0.00 0.00 0.00 3.36
569 574 7.255277 CGTCTAGATACATCCATTTCTGAGACA 60.255 40.741 0.00 0.00 0.00 3.41
570 575 8.417106 GTCTAGATACATCCATTTCTGAGACAA 58.583 37.037 0.00 0.00 0.00 3.18
571 576 8.637099 TCTAGATACATCCATTTCTGAGACAAG 58.363 37.037 0.00 0.00 0.00 3.16
572 577 7.192852 AGATACATCCATTTCTGAGACAAGT 57.807 36.000 0.00 0.00 0.00 3.16
573 578 8.311395 AGATACATCCATTTCTGAGACAAGTA 57.689 34.615 0.00 0.00 0.00 2.24
574 579 8.932610 AGATACATCCATTTCTGAGACAAGTAT 58.067 33.333 0.00 0.00 0.00 2.12
575 580 9.553064 GATACATCCATTTCTGAGACAAGTATT 57.447 33.333 0.00 0.00 0.00 1.89
576 581 9.911788 ATACATCCATTTCTGAGACAAGTATTT 57.088 29.630 0.00 0.00 0.00 1.40
577 582 8.273780 ACATCCATTTCTGAGACAAGTATTTC 57.726 34.615 0.00 0.00 0.00 2.17
578 583 7.337942 ACATCCATTTCTGAGACAAGTATTTCC 59.662 37.037 0.00 0.00 0.00 3.13
579 584 5.874810 TCCATTTCTGAGACAAGTATTTCCG 59.125 40.000 0.00 0.00 0.00 4.30
580 585 5.065218 CCATTTCTGAGACAAGTATTTCCGG 59.935 44.000 0.00 0.00 0.00 5.14
581 586 5.477607 TTTCTGAGACAAGTATTTCCGGA 57.522 39.130 0.00 0.00 0.00 5.14
582 587 4.451629 TCTGAGACAAGTATTTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
583 588 3.119602 TCTGAGACAAGTATTTCCGGACG 60.120 47.826 1.83 0.00 0.00 4.79
584 589 2.094390 TGAGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
585 590 2.165030 GAGACAAGTATTTCCGGACGGA 59.835 50.000 1.83 9.76 43.52 4.69
586 591 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
587 592 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
588 593 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
589 594 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
590 595 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
591 596 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
592 597 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
593 598 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
594 599 3.207669 CCGGACGGAGGGAGTACG 61.208 72.222 4.40 0.00 44.88 3.67
595 600 2.437359 CGGACGGAGGGAGTACGT 60.437 66.667 0.00 0.00 40.75 3.57
596 601 1.153369 CGGACGGAGGGAGTACGTA 60.153 63.158 0.00 0.00 40.75 3.57
597 602 1.432270 CGGACGGAGGGAGTACGTAC 61.432 65.000 18.10 18.10 40.75 3.67
599 604 0.392998 GACGGAGGGAGTACGTACCA 60.393 60.000 21.80 0.00 41.40 3.25
612 617 5.098211 AGTACGTACCAAGCTAAAATCGAC 58.902 41.667 21.80 0.00 0.00 4.20
614 619 3.255725 CGTACCAAGCTAAAATCGACCA 58.744 45.455 0.00 0.00 0.00 4.02
621 626 5.277538 CCAAGCTAAAATCGACCAAGATAGC 60.278 44.000 0.00 0.00 32.66 2.97
624 629 4.980434 GCTAAAATCGACCAAGATAGCGTA 59.020 41.667 0.00 0.00 0.00 4.42
666 671 6.490566 TTCTCCCTCAAGTTAATAAAACGC 57.509 37.500 0.00 0.00 0.00 4.84
677 682 6.782150 AGTTAATAAAACGCTCATACTTGGC 58.218 36.000 0.00 0.00 0.00 4.52
679 684 5.897377 AATAAAACGCTCATACTTGGCTT 57.103 34.783 0.00 0.00 0.00 4.35
749 754 3.043998 AGACTCACAAGGCTCGAGT 57.956 52.632 15.13 12.42 35.13 4.18
778 1091 0.111639 AGACCTAGCCTCCGGAGATC 59.888 60.000 33.39 22.34 0.00 2.75
806 1119 1.709994 GGATGGAAAGGGCGAGGGAT 61.710 60.000 0.00 0.00 0.00 3.85
807 1120 0.183731 GATGGAAAGGGCGAGGGATT 59.816 55.000 0.00 0.00 0.00 3.01
828 1142 4.951963 CTCCTCCGGCCGCGAATC 62.952 72.222 22.85 0.00 0.00 2.52
854 1191 0.675083 TCTCACCTGGAACGCGTTAA 59.325 50.000 26.68 15.39 0.00 2.01
889 1229 1.918800 CTGACCCGGAACCCTCCTT 60.919 63.158 0.73 0.00 39.93 3.36
1057 1397 1.392710 ATACCTCTTCTCCCACGCCG 61.393 60.000 0.00 0.00 0.00 6.46
1302 1645 2.284151 GGGGAGGAGGAGGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
1492 1836 2.671619 TTTTTCGCCCTCGCCCTG 60.672 61.111 0.00 0.00 35.26 4.45
1497 1841 2.587322 TTCGCCCTCGCCCTGTAATG 62.587 60.000 0.00 0.00 35.26 1.90
1529 1873 2.557924 TGCAGTTTCCTTGTGCCTTATG 59.442 45.455 0.00 0.00 36.31 1.90
1541 1885 4.717877 TGTGCCTTATGATACAGGATTGG 58.282 43.478 5.30 0.00 30.81 3.16
1549 1893 0.182775 ATACAGGATTGGAACGGGGC 59.817 55.000 0.00 0.00 0.00 5.80
1578 1922 3.193691 GGTCACTCCGGTATATGATGAGG 59.806 52.174 0.00 0.00 0.00 3.86
1585 1929 3.067106 CGGTATATGATGAGGTTGGCAC 58.933 50.000 0.00 0.00 0.00 5.01
1658 2004 7.136119 TGTTGTTGAGATGGAAACGAAATTAC 58.864 34.615 0.00 0.00 0.00 1.89
1659 2005 5.922546 TGTTGAGATGGAAACGAAATTACG 58.077 37.500 0.00 0.00 39.31 3.18
1661 2007 6.645827 TGTTGAGATGGAAACGAAATTACGTA 59.354 34.615 0.00 0.00 45.83 3.57
1688 2042 1.745320 AAGTGCCGTCCAACTCGTCT 61.745 55.000 0.00 0.00 0.00 4.18
1714 2068 1.613437 ACTGAAATTGCGGGGAGTTTG 59.387 47.619 0.00 0.00 0.00 2.93
1730 2109 7.063308 CGGGGAGTTTGTTGATTGATTAAATTG 59.937 37.037 0.00 0.00 0.00 2.32
1844 2223 5.245531 TGCAAGTTTAGGTTATGACAGGAG 58.754 41.667 0.00 0.00 0.00 3.69
2033 2412 6.203530 TGCGCAGACTATAAACTAGTACGTAT 59.796 38.462 5.66 0.00 0.00 3.06
2034 2413 7.074502 GCGCAGACTATAAACTAGTACGTATT 58.925 38.462 0.30 0.00 0.00 1.89
2092 2471 3.001838 CGCTTTGTTTGTGTAGCTGTGTA 59.998 43.478 0.00 0.00 0.00 2.90
2137 2516 5.774498 AGGAAGTTTTTAACCTCTGCTTG 57.226 39.130 0.00 0.00 0.00 4.01
2153 2532 6.207691 TCTGCTTGAAGTTAAGTTTGCTTT 57.792 33.333 13.71 0.00 36.22 3.51
2164 2543 6.756542 AGTTAAGTTTGCTTTGTTGCCTAAAG 59.243 34.615 0.00 0.00 38.00 1.85
2165 2544 4.058721 AGTTTGCTTTGTTGCCTAAAGG 57.941 40.909 0.00 0.00 36.04 3.11
2166 2545 3.130633 GTTTGCTTTGTTGCCTAAAGGG 58.869 45.455 0.00 0.00 36.04 3.95
2170 2549 2.489722 GCTTTGTTGCCTAAAGGGAGAG 59.510 50.000 0.00 0.00 36.70 3.20
2208 2587 9.953697 AGTTAACTCTGAATCGTATGATCTTAC 57.046 33.333 1.12 8.38 32.24 2.34
2239 2618 0.240945 CTGCAAGGTAAAACAGCCCG 59.759 55.000 0.00 0.00 0.00 6.13
2240 2619 1.175983 TGCAAGGTAAAACAGCCCGG 61.176 55.000 0.00 0.00 0.00 5.73
2314 2694 7.360861 CGCTAGTGATGTTTACAGAAAAATGGA 60.361 37.037 0.00 0.00 0.00 3.41
2337 2717 5.279685 AGGGAATGGCCATAGAAAAATGAA 58.720 37.500 21.15 0.00 38.95 2.57
2380 2760 2.782997 ATCAGGGGACGGGAAGGGTT 62.783 60.000 0.00 0.00 0.00 4.11
2474 2855 1.374947 GACACCAGCTTACAGGGCA 59.625 57.895 0.00 0.00 0.00 5.36
2505 2886 7.772757 GGGGCAAATTATATTGGAAATGAACAA 59.227 33.333 0.00 0.00 0.00 2.83
2529 2910 5.467668 TCTGAAGTCTGTAGGGAATAGGA 57.532 43.478 0.00 0.00 0.00 2.94
2533 2914 6.444704 TGAAGTCTGTAGGGAATAGGAGAAT 58.555 40.000 0.00 0.00 0.00 2.40
2542 2923 7.681598 TGTAGGGAATAGGAGAATCATCATCAT 59.318 37.037 0.00 0.00 36.25 2.45
2545 2926 7.018349 AGGGAATAGGAGAATCATCATCATTGT 59.982 37.037 0.00 0.00 36.25 2.71
2567 2948 9.959749 ATTGTAAAACTGTAACTTGTAACCATG 57.040 29.630 0.00 0.00 0.00 3.66
2568 2949 8.508883 TGTAAAACTGTAACTTGTAACCATGT 57.491 30.769 0.00 0.00 0.00 3.21
2569 2950 9.610705 TGTAAAACTGTAACTTGTAACCATGTA 57.389 29.630 0.00 0.00 0.00 2.29
2571 2952 8.741603 AAAACTGTAACTTGTAACCATGTAGT 57.258 30.769 0.00 0.00 0.00 2.73
2572 2953 7.724305 AACTGTAACTTGTAACCATGTAGTG 57.276 36.000 0.00 0.00 0.00 2.74
2573 2954 6.823497 ACTGTAACTTGTAACCATGTAGTGT 58.177 36.000 0.00 0.00 0.00 3.55
2574 2955 6.927381 ACTGTAACTTGTAACCATGTAGTGTC 59.073 38.462 0.00 0.00 0.00 3.67
2575 2956 6.818233 TGTAACTTGTAACCATGTAGTGTCA 58.182 36.000 0.00 0.00 0.00 3.58
2576 2957 7.273712 TGTAACTTGTAACCATGTAGTGTCAA 58.726 34.615 0.00 0.00 0.00 3.18
2577 2958 7.769507 TGTAACTTGTAACCATGTAGTGTCAAA 59.230 33.333 0.00 0.00 0.00 2.69
2578 2959 7.633193 AACTTGTAACCATGTAGTGTCAAAA 57.367 32.000 0.00 0.00 0.00 2.44
2579 2960 7.633193 ACTTGTAACCATGTAGTGTCAAAAA 57.367 32.000 0.00 0.00 0.00 1.94
2627 3008 8.132285 AGGGAGTATATATTTTATGAGAGGCCT 58.868 37.037 3.86 3.86 0.00 5.19
2628 3009 8.207545 GGGAGTATATATTTTATGAGAGGCCTG 58.792 40.741 12.00 0.00 0.00 4.85
2629 3010 8.982723 GGAGTATATATTTTATGAGAGGCCTGA 58.017 37.037 12.00 0.00 0.00 3.86
2641 3022 3.414272 GCCTGAATGCCTGCTACG 58.586 61.111 0.00 0.00 0.00 3.51
2647 3028 2.679837 CTGAATGCCTGCTACGATTGTT 59.320 45.455 0.00 0.00 0.00 2.83
2648 3029 2.419673 TGAATGCCTGCTACGATTGTTG 59.580 45.455 0.00 0.00 0.00 3.33
2659 3040 2.238521 ACGATTGTTGAAGTGCCCATT 58.761 42.857 0.00 0.00 0.00 3.16
2664 3045 4.686191 TTGTTGAAGTGCCCATTTCAAT 57.314 36.364 17.88 0.00 44.77 2.57
2708 3089 9.860898 TTCTCGTAATTTTAACTAACTACTCCC 57.139 33.333 0.00 0.00 0.00 4.30
2709 3090 9.247861 TCTCGTAATTTTAACTAACTACTCCCT 57.752 33.333 0.00 0.00 0.00 4.20
2710 3091 9.513727 CTCGTAATTTTAACTAACTACTCCCTC 57.486 37.037 0.00 0.00 0.00 4.30
2711 3092 8.470002 TCGTAATTTTAACTAACTACTCCCTCC 58.530 37.037 0.00 0.00 0.00 4.30
2712 3093 7.433425 CGTAATTTTAACTAACTACTCCCTCCG 59.567 40.741 0.00 0.00 0.00 4.63
2713 3094 6.864151 ATTTTAACTAACTACTCCCTCCGT 57.136 37.500 0.00 0.00 0.00 4.69
2714 3095 5.904362 TTTAACTAACTACTCCCTCCGTC 57.096 43.478 0.00 0.00 0.00 4.79
2715 3096 2.433662 ACTAACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
2716 3097 1.921748 ACTAACTACTCCCTCCGTCCT 59.078 52.381 0.00 0.00 0.00 3.85
2717 3098 2.311243 ACTAACTACTCCCTCCGTCCTT 59.689 50.000 0.00 0.00 0.00 3.36
2718 3099 3.525199 ACTAACTACTCCCTCCGTCCTTA 59.475 47.826 0.00 0.00 0.00 2.69
2719 3100 3.463048 AACTACTCCCTCCGTCCTTAA 57.537 47.619 0.00 0.00 0.00 1.85
2720 3101 3.463048 ACTACTCCCTCCGTCCTTAAA 57.537 47.619 0.00 0.00 0.00 1.52
2721 3102 3.991683 ACTACTCCCTCCGTCCTTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2722 3103 5.134725 ACTACTCCCTCCGTCCTTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2723 3104 5.522641 ACTACTCCCTCCGTCCTTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
2724 3105 5.597594 ACTACTCCCTCCGTCCTTAAATAAG 59.402 44.000 0.00 0.00 0.00 1.73
2725 3106 4.359996 ACTCCCTCCGTCCTTAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
2726 3107 4.161754 ACTCCCTCCGTCCTTAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
2727 3108 4.098894 TCCCTCCGTCCTTAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
2728 3109 4.533311 TCCCTCCGTCCTTAAATAAGTGTT 59.467 41.667 0.00 0.00 0.00 3.32
2729 3110 5.721000 TCCCTCCGTCCTTAAATAAGTGTTA 59.279 40.000 0.00 0.00 0.00 2.41
2730 3111 6.384886 TCCCTCCGTCCTTAAATAAGTGTTAT 59.615 38.462 0.00 0.00 0.00 1.89
2731 3112 7.052248 CCCTCCGTCCTTAAATAAGTGTTATT 58.948 38.462 0.00 0.00 37.43 1.40
2732 3113 7.555195 CCCTCCGTCCTTAAATAAGTGTTATTT 59.445 37.037 9.10 9.10 45.19 1.40
2733 3114 8.953313 CCTCCGTCCTTAAATAAGTGTTATTTT 58.047 33.333 9.34 0.00 41.69 1.82
2734 3115 9.769093 CTCCGTCCTTAAATAAGTGTTATTTTG 57.231 33.333 9.34 4.72 41.69 2.44
2735 3116 8.732531 TCCGTCCTTAAATAAGTGTTATTTTGG 58.267 33.333 9.34 11.34 41.69 3.28
2736 3117 7.971722 CCGTCCTTAAATAAGTGTTATTTTGGG 59.028 37.037 9.34 11.05 41.69 4.12
2737 3118 8.732531 CGTCCTTAAATAAGTGTTATTTTGGGA 58.267 33.333 9.34 12.59 41.69 4.37
2738 3119 9.850628 GTCCTTAAATAAGTGTTATTTTGGGAC 57.149 33.333 22.69 22.69 45.24 4.46
2739 3120 8.732531 TCCTTAAATAAGTGTTATTTTGGGACG 58.267 33.333 9.34 0.00 41.69 4.79
2740 3121 7.971722 CCTTAAATAAGTGTTATTTTGGGACGG 59.028 37.037 9.34 0.00 41.69 4.79
2744 3125 3.352648 AGTGTTATTTTGGGACGGATGG 58.647 45.455 0.00 0.00 0.00 3.51
2746 3127 3.377172 GTGTTATTTTGGGACGGATGGAG 59.623 47.826 0.00 0.00 0.00 3.86
2756 3137 3.305199 GGGACGGATGGAGTATTACTTCG 60.305 52.174 0.00 1.52 0.00 3.79
2757 3138 3.305199 GGACGGATGGAGTATTACTTCGG 60.305 52.174 0.00 0.00 0.00 4.30
2765 3146 5.116180 TGGAGTATTACTTCGGCAAATGAG 58.884 41.667 0.00 0.00 0.00 2.90
2785 3166 1.149148 GTTCTGGACTCTGAAACGCC 58.851 55.000 0.00 0.00 33.64 5.68
2799 3180 0.460284 AACGCCTGAAGCCTGATACG 60.460 55.000 0.00 0.00 38.78 3.06
2808 3189 3.068165 TGAAGCCTGATACGAATGTCGAT 59.932 43.478 4.40 0.00 43.74 3.59
2828 3210 3.681593 TTGCCCATTTCAAACAGGATG 57.318 42.857 0.00 0.00 46.00 3.51
2898 3282 0.034896 TTCTGGACTCTGAAACGCCC 59.965 55.000 0.00 0.00 0.00 6.13
2908 3292 3.547746 TCTGAAACGCCCACTTTACTTT 58.452 40.909 0.00 0.00 0.00 2.66
2924 3308 6.721208 ACTTTACTTTGACATTCCCACATGAT 59.279 34.615 0.00 0.00 0.00 2.45
3040 3424 6.931840 ACCTTCTTGAAATAGACAGACAAGAC 59.068 38.462 0.00 0.00 43.83 3.01
3056 3440 4.227197 ACAAGACCAGAAAGGAGAAGAGA 58.773 43.478 0.00 0.00 41.22 3.10
3057 3441 4.843516 ACAAGACCAGAAAGGAGAAGAGAT 59.156 41.667 0.00 0.00 41.22 2.75
3160 3544 2.990479 GCCGTCCTTGAGTGGGAT 59.010 61.111 0.00 0.00 35.15 3.85
3172 3556 0.616111 AGTGGGATCGGTCTTCTGCT 60.616 55.000 0.00 0.00 0.00 4.24
3208 3592 2.100631 CCTAAGACCAAGTGGCGCG 61.101 63.158 0.00 0.00 39.32 6.86
3250 3634 1.129998 CGAGGAACATTGCTGCAGAAG 59.870 52.381 20.43 5.72 0.00 2.85
3325 3709 7.496747 AGAGCTTAAAAGGATCAGTGAGATAC 58.503 38.462 0.00 0.00 37.00 2.24
3469 3853 2.166664 AGGAATCTTCGTAGACTGCCAC 59.833 50.000 0.00 0.00 34.32 5.01
3621 4005 1.352017 TGAGGGCAGCATCAAGAAGAA 59.648 47.619 0.00 0.00 0.00 2.52
3625 4009 2.094854 GGGCAGCATCAAGAAGAAACTG 60.095 50.000 0.00 0.00 36.71 3.16
3709 4093 1.963985 ACAATGCTCCCTCTTCCTCT 58.036 50.000 0.00 0.00 0.00 3.69
3711 4095 1.836166 CAATGCTCCCTCTTCCTCTGA 59.164 52.381 0.00 0.00 0.00 3.27
3721 4105 2.837371 CTTCCTCTGAACCCGACGGC 62.837 65.000 8.86 0.00 0.00 5.68
3996 4383 9.397280 GGGTAGTTAGAAATGCTCTTTCTAATT 57.603 33.333 24.62 23.09 46.39 1.40
4024 4412 0.685097 CCTCAACTGAACCCCTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
4030 4418 2.779506 ACTGAACCCCTCGAAATGTTC 58.220 47.619 11.59 11.59 38.03 3.18
4647 5299 4.451557 CCGTTTGTTTCGTAATGACTGAC 58.548 43.478 0.00 0.00 0.00 3.51
4754 5883 4.292643 AGGGATCCAAGGGATTCATTTTG 58.707 43.478 15.23 0.00 43.27 2.44
4901 7958 0.107848 AGATTTTACCTGTCCCGCGG 60.108 55.000 21.04 21.04 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.394216 TATGCTGTGTGTGGCCCATC 60.394 55.000 0.00 0.00 0.00 3.51
1 2 0.039472 TTATGCTGTGTGTGGCCCAT 59.961 50.000 0.00 0.00 0.00 4.00
2 3 0.178978 TTTATGCTGTGTGTGGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
3 4 0.965439 TTTTATGCTGTGTGTGGCCC 59.035 50.000 0.00 0.00 0.00 5.80
4 5 2.810439 TTTTTATGCTGTGTGTGGCC 57.190 45.000 0.00 0.00 0.00 5.36
47 48 9.756571 AGAGTATTAGTCTCCAGTTAAGAAAGA 57.243 33.333 0.00 0.00 32.93 2.52
49 50 9.756571 AGAGAGTATTAGTCTCCAGTTAAGAAA 57.243 33.333 20.24 0.00 43.96 2.52
50 51 9.398538 GAGAGAGTATTAGTCTCCAGTTAAGAA 57.601 37.037 20.24 0.00 43.96 2.52
51 52 8.967664 GAGAGAGTATTAGTCTCCAGTTAAGA 57.032 38.462 20.24 0.00 43.96 2.10
60 61 6.870971 ATGAACGGAGAGAGTATTAGTCTC 57.129 41.667 17.40 17.40 43.39 3.36
61 62 8.749026 TTTATGAACGGAGAGAGTATTAGTCT 57.251 34.615 0.48 0.48 0.00 3.24
62 63 9.968870 AATTTATGAACGGAGAGAGTATTAGTC 57.031 33.333 0.00 0.00 0.00 2.59
69 70 9.319143 CATCTTAAATTTATGAACGGAGAGAGT 57.681 33.333 15.42 0.00 0.00 3.24
70 71 9.319143 ACATCTTAAATTTATGAACGGAGAGAG 57.681 33.333 15.42 6.32 0.00 3.20
71 72 9.667107 AACATCTTAAATTTATGAACGGAGAGA 57.333 29.630 15.42 5.64 0.00 3.10
91 92 9.683069 GTTCATGTTGAAACATCTAAAACATCT 57.317 29.630 5.70 0.00 46.10 2.90
92 93 9.683069 AGTTCATGTTGAAACATCTAAAACATC 57.317 29.630 5.70 0.00 46.10 3.06
94 95 9.944663 GTAGTTCATGTTGAAACATCTAAAACA 57.055 29.630 5.70 0.00 46.10 2.83
95 96 9.944663 TGTAGTTCATGTTGAAACATCTAAAAC 57.055 29.630 5.70 8.31 46.10 2.43
123 124 9.013229 TGTGTGCTTTTATTCATTCAAGTCTAT 57.987 29.630 0.00 0.00 0.00 1.98
124 125 8.289618 GTGTGTGCTTTTATTCATTCAAGTCTA 58.710 33.333 0.00 0.00 0.00 2.59
125 126 7.013655 AGTGTGTGCTTTTATTCATTCAAGTCT 59.986 33.333 0.00 0.00 0.00 3.24
126 127 7.141363 AGTGTGTGCTTTTATTCATTCAAGTC 58.859 34.615 0.00 0.00 0.00 3.01
127 128 7.042797 AGTGTGTGCTTTTATTCATTCAAGT 57.957 32.000 0.00 0.00 0.00 3.16
128 129 9.462174 TTTAGTGTGTGCTTTTATTCATTCAAG 57.538 29.630 0.00 0.00 0.00 3.02
129 130 9.462174 CTTTAGTGTGTGCTTTTATTCATTCAA 57.538 29.630 0.00 0.00 0.00 2.69
130 131 7.594758 GCTTTAGTGTGTGCTTTTATTCATTCA 59.405 33.333 0.00 0.00 0.00 2.57
131 132 7.201266 CGCTTTAGTGTGTGCTTTTATTCATTC 60.201 37.037 0.00 0.00 0.00 2.67
132 133 6.582295 CGCTTTAGTGTGTGCTTTTATTCATT 59.418 34.615 0.00 0.00 0.00 2.57
133 134 6.086222 CGCTTTAGTGTGTGCTTTTATTCAT 58.914 36.000 0.00 0.00 0.00 2.57
134 135 5.008217 ACGCTTTAGTGTGTGCTTTTATTCA 59.992 36.000 0.00 0.00 37.39 2.57
135 136 5.449304 ACGCTTTAGTGTGTGCTTTTATTC 58.551 37.500 0.00 0.00 37.39 1.75
136 137 5.432885 ACGCTTTAGTGTGTGCTTTTATT 57.567 34.783 0.00 0.00 37.39 1.40
151 152 9.984190 TGGTCATATGTATATAAACACGCTTTA 57.016 29.630 1.90 0.00 30.75 1.85
152 153 8.770828 GTGGTCATATGTATATAAACACGCTTT 58.229 33.333 1.90 0.00 30.75 3.51
153 154 7.929245 TGTGGTCATATGTATATAAACACGCTT 59.071 33.333 1.90 0.00 30.75 4.68
154 155 7.438564 TGTGGTCATATGTATATAAACACGCT 58.561 34.615 1.90 0.00 30.75 5.07
155 156 7.597369 TCTGTGGTCATATGTATATAAACACGC 59.403 37.037 1.90 0.00 30.75 5.34
156 157 9.471084 TTCTGTGGTCATATGTATATAAACACG 57.529 33.333 1.90 0.00 30.75 4.49
166 167 9.431887 GTTCTAACTTTTCTGTGGTCATATGTA 57.568 33.333 1.90 0.00 0.00 2.29
167 168 7.936847 TGTTCTAACTTTTCTGTGGTCATATGT 59.063 33.333 1.90 0.00 0.00 2.29
168 169 8.322906 TGTTCTAACTTTTCTGTGGTCATATG 57.677 34.615 0.00 0.00 0.00 1.78
169 170 9.520515 AATGTTCTAACTTTTCTGTGGTCATAT 57.479 29.630 0.00 0.00 0.00 1.78
170 171 8.918202 AATGTTCTAACTTTTCTGTGGTCATA 57.082 30.769 0.00 0.00 0.00 2.15
171 172 7.823745 AATGTTCTAACTTTTCTGTGGTCAT 57.176 32.000 0.00 0.00 0.00 3.06
172 173 7.639113 AAATGTTCTAACTTTTCTGTGGTCA 57.361 32.000 1.97 0.00 32.78 4.02
188 189 8.458843 CCTCCGTTCACAAATATAAAATGTTCT 58.541 33.333 0.00 0.00 0.00 3.01
189 190 7.700656 CCCTCCGTTCACAAATATAAAATGTTC 59.299 37.037 0.00 0.00 0.00 3.18
190 191 7.394923 TCCCTCCGTTCACAAATATAAAATGTT 59.605 33.333 0.00 0.00 0.00 2.71
191 192 6.887545 TCCCTCCGTTCACAAATATAAAATGT 59.112 34.615 0.00 0.00 0.00 2.71
192 193 7.067008 ACTCCCTCCGTTCACAAATATAAAATG 59.933 37.037 0.00 0.00 0.00 2.32
193 194 7.116736 ACTCCCTCCGTTCACAAATATAAAAT 58.883 34.615 0.00 0.00 0.00 1.82
194 195 6.478129 ACTCCCTCCGTTCACAAATATAAAA 58.522 36.000 0.00 0.00 0.00 1.52
195 196 6.057321 ACTCCCTCCGTTCACAAATATAAA 57.943 37.500 0.00 0.00 0.00 1.40
196 197 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
197 198 5.895534 AGTACTCCCTCCGTTCACAAATATA 59.104 40.000 0.00 0.00 0.00 0.86
198 199 4.715297 AGTACTCCCTCCGTTCACAAATAT 59.285 41.667 0.00 0.00 0.00 1.28
199 200 4.091549 AGTACTCCCTCCGTTCACAAATA 58.908 43.478 0.00 0.00 0.00 1.40
248 249 7.229506 ACACTTTCATGTTCCTTTCTTTCTAGG 59.770 37.037 0.00 0.00 0.00 3.02
260 261 6.147164 TGAGAACGAATACACTTTCATGTTCC 59.853 38.462 0.00 0.00 36.12 3.62
264 265 6.017933 GCTTGAGAACGAATACACTTTCATG 58.982 40.000 0.00 0.00 0.00 3.07
278 279 0.667993 TTGGCCAAAGCTTGAGAACG 59.332 50.000 17.98 0.00 39.73 3.95
287 288 4.519540 TCTTGTTATTCTTGGCCAAAGC 57.480 40.909 20.91 7.22 35.69 3.51
304 305 6.828273 TGGTGGACCTTATGTCAAATATCTTG 59.172 38.462 0.00 0.00 46.38 3.02
306 307 6.575244 TGGTGGACCTTATGTCAAATATCT 57.425 37.500 0.00 0.00 46.38 1.98
354 355 4.795970 ATCAAAGCTTAATTACGCTCGG 57.204 40.909 16.00 11.42 34.96 4.63
463 468 8.370182 GGACGGAAGGAGTACCATATAATTTTA 58.630 37.037 0.00 0.00 38.94 1.52
483 488 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
484 489 1.997606 GTGACAAGTAATTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
485 490 1.652124 CGTGACAAGTAATTCCGGACG 59.348 52.381 1.83 0.00 0.00 4.79
486 491 2.950433 TCGTGACAAGTAATTCCGGAC 58.050 47.619 1.83 0.00 0.00 4.79
487 492 3.663995 TTCGTGACAAGTAATTCCGGA 57.336 42.857 0.00 0.00 0.00 5.14
488 493 4.735662 TTTTCGTGACAAGTAATTCCGG 57.264 40.909 0.00 0.00 0.00 5.14
489 494 5.922546 TCATTTTCGTGACAAGTAATTCCG 58.077 37.500 0.00 0.00 0.00 4.30
490 495 9.490663 CTATTCATTTTCGTGACAAGTAATTCC 57.509 33.333 0.00 0.00 0.00 3.01
538 543 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
539 544 9.078990 TCAGAAATGGATGTATCTAGACGTATT 57.921 33.333 0.00 0.00 0.00 1.89
540 545 8.637196 TCAGAAATGGATGTATCTAGACGTAT 57.363 34.615 0.00 0.00 0.00 3.06
541 546 7.937394 TCTCAGAAATGGATGTATCTAGACGTA 59.063 37.037 0.00 0.00 0.00 3.57
542 547 6.773200 TCTCAGAAATGGATGTATCTAGACGT 59.227 38.462 0.00 0.00 0.00 4.34
543 548 7.081349 GTCTCAGAAATGGATGTATCTAGACG 58.919 42.308 0.00 0.00 0.00 4.18
544 549 7.946207 TGTCTCAGAAATGGATGTATCTAGAC 58.054 38.462 0.00 0.00 0.00 2.59
545 550 8.539117 TTGTCTCAGAAATGGATGTATCTAGA 57.461 34.615 0.00 0.00 0.00 2.43
546 551 8.420222 ACTTGTCTCAGAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 0.00 2.43
547 552 8.311395 ACTTGTCTCAGAAATGGATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
548 553 7.192852 ACTTGTCTCAGAAATGGATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
549 554 9.553064 AATACTTGTCTCAGAAATGGATGTATC 57.447 33.333 0.00 0.00 0.00 2.24
550 555 9.911788 AAATACTTGTCTCAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
551 556 9.383519 GAAATACTTGTCTCAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
552 557 7.337942 GGAAATACTTGTCTCAGAAATGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
553 558 7.466455 CGGAAATACTTGTCTCAGAAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
554 559 6.540189 CGGAAATACTTGTCTCAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
555 560 5.874810 CGGAAATACTTGTCTCAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
556 561 5.065218 CCGGAAATACTTGTCTCAGAAATGG 59.935 44.000 0.00 0.00 0.00 3.16
557 562 5.874810 TCCGGAAATACTTGTCTCAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
558 563 5.875359 GTCCGGAAATACTTGTCTCAGAAAT 59.125 40.000 5.23 0.00 0.00 2.17
559 564 5.235516 GTCCGGAAATACTTGTCTCAGAAA 58.764 41.667 5.23 0.00 0.00 2.52
560 565 4.617530 CGTCCGGAAATACTTGTCTCAGAA 60.618 45.833 5.23 0.00 0.00 3.02
561 566 3.119602 CGTCCGGAAATACTTGTCTCAGA 60.120 47.826 5.23 0.00 0.00 3.27
562 567 3.179830 CGTCCGGAAATACTTGTCTCAG 58.820 50.000 5.23 0.00 0.00 3.35
563 568 2.094390 CCGTCCGGAAATACTTGTCTCA 60.094 50.000 5.23 0.00 37.50 3.27
564 569 2.165030 TCCGTCCGGAAATACTTGTCTC 59.835 50.000 5.23 0.00 42.05 3.36
565 570 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
566 571 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
567 572 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
568 573 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
569 574 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
570 575 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
571 576 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
572 577 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
573 578 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
574 579 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
575 580 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
576 581 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
577 582 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
578 583 1.153369 TACGTACTCCCTCCGTCCG 60.153 63.158 0.00 0.00 36.12 4.79
579 584 1.098129 GGTACGTACTCCCTCCGTCC 61.098 65.000 24.07 0.75 36.12 4.79
580 585 0.392998 TGGTACGTACTCCCTCCGTC 60.393 60.000 24.07 5.85 36.12 4.79
581 586 0.038166 TTGGTACGTACTCCCTCCGT 59.962 55.000 24.07 0.00 38.53 4.69
582 587 0.737219 CTTGGTACGTACTCCCTCCG 59.263 60.000 24.07 3.99 0.00 4.63
583 588 0.459078 GCTTGGTACGTACTCCCTCC 59.541 60.000 24.07 8.11 0.00 4.30
584 589 1.472188 AGCTTGGTACGTACTCCCTC 58.528 55.000 24.07 8.64 0.00 4.30
585 590 2.814805 TAGCTTGGTACGTACTCCCT 57.185 50.000 24.07 16.59 0.00 4.20
586 591 3.874392 TTTAGCTTGGTACGTACTCCC 57.126 47.619 24.07 9.58 0.00 4.30
587 592 4.501921 CGATTTTAGCTTGGTACGTACTCC 59.498 45.833 24.07 10.32 0.00 3.85
588 593 5.228843 GTCGATTTTAGCTTGGTACGTACTC 59.771 44.000 24.07 14.94 0.00 2.59
589 594 5.098211 GTCGATTTTAGCTTGGTACGTACT 58.902 41.667 24.07 7.61 0.00 2.73
590 595 4.266265 GGTCGATTTTAGCTTGGTACGTAC 59.734 45.833 17.56 17.56 0.00 3.67
591 596 4.082300 TGGTCGATTTTAGCTTGGTACGTA 60.082 41.667 0.00 0.00 0.00 3.57
592 597 3.256558 GGTCGATTTTAGCTTGGTACGT 58.743 45.455 0.00 0.00 0.00 3.57
593 598 3.255725 TGGTCGATTTTAGCTTGGTACG 58.744 45.455 0.00 0.00 0.00 3.67
594 599 4.933400 TCTTGGTCGATTTTAGCTTGGTAC 59.067 41.667 0.00 0.00 0.00 3.34
595 600 5.155278 TCTTGGTCGATTTTAGCTTGGTA 57.845 39.130 0.00 0.00 0.00 3.25
596 601 4.015872 TCTTGGTCGATTTTAGCTTGGT 57.984 40.909 0.00 0.00 0.00 3.67
597 602 5.277538 GCTATCTTGGTCGATTTTAGCTTGG 60.278 44.000 0.00 0.00 0.00 3.61
599 604 4.508124 CGCTATCTTGGTCGATTTTAGCTT 59.492 41.667 0.00 0.00 0.00 3.74
621 626 4.030134 ACGAGTTGATCTTAAGCCTACG 57.970 45.455 0.00 0.00 0.00 3.51
624 629 5.153950 AGAAACGAGTTGATCTTAAGCCT 57.846 39.130 0.00 0.00 0.00 4.58
666 671 6.855836 TGCAAAGAAATAAGCCAAGTATGAG 58.144 36.000 0.00 0.00 0.00 2.90
702 707 7.199541 AGATTGATTCATATTTTGGCTCGAG 57.800 36.000 8.45 8.45 0.00 4.04
749 754 4.270008 GGAGGCTAGGTCTGCAATAAAAA 58.730 43.478 0.00 0.00 0.00 1.94
778 1091 0.394352 CCTTTCCATCCGTTCCCCTG 60.394 60.000 0.00 0.00 0.00 4.45
827 1141 2.783135 GTTCCAGGTGAGATTTGCAGA 58.217 47.619 0.00 0.00 0.00 4.26
828 1142 1.466167 CGTTCCAGGTGAGATTTGCAG 59.534 52.381 0.00 0.00 0.00 4.41
830 1144 0.169009 GCGTTCCAGGTGAGATTTGC 59.831 55.000 0.00 0.00 0.00 3.68
854 1191 7.396055 TCCGGGTCAGATTTTAGAATTTTCATT 59.604 33.333 0.00 0.00 0.00 2.57
889 1229 2.941025 CCTCCTTGGCCCTTGGGA 60.941 66.667 10.36 1.29 0.00 4.37
1057 1397 2.507324 GAGCGTCGTCTTCCTGGC 60.507 66.667 0.00 0.00 0.00 4.85
1302 1645 0.462581 CCACCATCACCACATCCTCG 60.463 60.000 0.00 0.00 0.00 4.63
1452 1795 8.511604 AAAATTACCAACTCGATCTGATGATT 57.488 30.769 0.00 0.00 32.19 2.57
1483 1827 0.396435 TATGGCATTACAGGGCGAGG 59.604 55.000 4.78 0.00 0.00 4.63
1492 1836 7.175641 AGGAAACTGCAAGATATATGGCATTAC 59.824 37.037 4.78 0.00 41.13 1.89
1497 1841 5.300286 ACAAGGAAACTGCAAGATATATGGC 59.700 40.000 0.00 0.00 42.68 4.40
1529 1873 1.814248 GCCCCGTTCCAATCCTGTATC 60.814 57.143 0.00 0.00 0.00 2.24
1585 1929 1.471487 TTCATCGAATCGACAGCGCG 61.471 55.000 7.77 0.00 39.18 6.86
1593 1937 2.585869 CCGCGGGTTCATCGAATCG 61.586 63.158 20.10 0.00 0.00 3.34
1614 1959 3.249189 ACCAAGGGCTCGGCAGAA 61.249 61.111 0.00 0.00 0.00 3.02
1658 2004 2.257034 GACGGCACTTCCTAAACTACG 58.743 52.381 0.00 0.00 0.00 3.51
1659 2005 2.614779 GGACGGCACTTCCTAAACTAC 58.385 52.381 0.00 0.00 44.11 2.73
1661 2007 3.929660 GGACGGCACTTCCTAAACT 57.070 52.632 0.00 0.00 44.11 2.66
1688 2042 0.033228 CCCGCAATTTCAGTTGGCAA 59.967 50.000 0.00 0.00 0.00 4.52
1714 2068 8.746922 TTGCTCTCACAATTTAATCAATCAAC 57.253 30.769 0.00 0.00 0.00 3.18
1763 2142 9.092338 ACACCACGGGATACTACAAATAATATA 57.908 33.333 0.00 0.00 0.00 0.86
1764 2143 7.876068 CACACCACGGGATACTACAAATAATAT 59.124 37.037 0.00 0.00 0.00 1.28
1774 2153 2.429250 CACATCACACCACGGGATACTA 59.571 50.000 0.00 0.00 0.00 1.82
1844 2223 3.554960 GGAGGGCAATCTTTTGTTTCCAC 60.555 47.826 0.00 0.00 35.17 4.02
2092 2471 4.612264 AATTGCCATGAAAACAAGAGCT 57.388 36.364 0.00 0.00 0.00 4.09
2137 2516 5.109210 AGGCAACAAAGCAAACTTAACTTC 58.891 37.500 0.00 0.00 34.05 3.01
2153 2532 4.349930 ACTTAACTCTCCCTTTAGGCAACA 59.650 41.667 0.00 0.00 41.41 3.33
2207 2586 4.891992 ACCTTGCAGTCTTACATACTGT 57.108 40.909 5.25 0.00 45.01 3.55
2208 2587 7.172532 TGTTTTACCTTGCAGTCTTACATACTG 59.827 37.037 0.00 0.00 45.80 2.74
2253 2632 4.028131 ACAGGGATCACATGATGCAATTT 58.972 39.130 14.37 0.00 43.56 1.82
2255 2634 3.308035 ACAGGGATCACATGATGCAAT 57.692 42.857 14.37 0.93 43.56 3.56
2270 2649 3.541632 AGCGACAATATTACCAACAGGG 58.458 45.455 0.00 0.00 44.81 4.45
2272 2651 6.040247 TCACTAGCGACAATATTACCAACAG 58.960 40.000 0.00 0.00 0.00 3.16
2314 2694 4.882559 TCATTTTTCTATGGCCATTCCCT 58.117 39.130 26.37 1.22 0.00 4.20
2357 2737 1.562475 CCTTCCCGTCCCCTGATTTTA 59.438 52.381 0.00 0.00 0.00 1.52
2505 2886 6.444704 TCCTATTCCCTACAGACTTCAGATT 58.555 40.000 0.00 0.00 0.00 2.40
2507 2888 5.193930 TCTCCTATTCCCTACAGACTTCAGA 59.806 44.000 0.00 0.00 0.00 3.27
2542 2923 8.958506 ACATGGTTACAAGTTACAGTTTTACAA 58.041 29.630 0.00 0.00 0.00 2.41
2545 2926 9.835389 ACTACATGGTTACAAGTTACAGTTTTA 57.165 29.630 0.00 0.00 30.21 1.52
2577 2958 8.899771 CCTTTGTCCCATAATATAAGACGTTTT 58.100 33.333 0.00 0.00 0.00 2.43
2578 2959 7.501225 CCCTTTGTCCCATAATATAAGACGTTT 59.499 37.037 0.00 0.00 0.00 3.60
2579 2960 6.996282 CCCTTTGTCCCATAATATAAGACGTT 59.004 38.462 0.00 0.00 0.00 3.99
2580 2961 6.328148 TCCCTTTGTCCCATAATATAAGACGT 59.672 38.462 0.00 0.00 0.00 4.34
2581 2962 6.765403 TCCCTTTGTCCCATAATATAAGACG 58.235 40.000 0.00 0.00 0.00 4.18
2582 2963 7.746703 ACTCCCTTTGTCCCATAATATAAGAC 58.253 38.462 0.00 0.00 0.00 3.01
2583 2964 7.947782 ACTCCCTTTGTCCCATAATATAAGA 57.052 36.000 0.00 0.00 0.00 2.10
2600 2981 8.773216 GGCCTCTCATAAAATATATACTCCCTT 58.227 37.037 0.00 0.00 0.00 3.95
2601 2982 8.132285 AGGCCTCTCATAAAATATATACTCCCT 58.868 37.037 0.00 0.00 0.00 4.20
2602 2983 8.207545 CAGGCCTCTCATAAAATATATACTCCC 58.792 40.741 0.00 0.00 0.00 4.30
2603 2984 8.982723 TCAGGCCTCTCATAAAATATATACTCC 58.017 37.037 0.00 0.00 0.00 3.85
2627 3008 2.401583 ACAATCGTAGCAGGCATTCA 57.598 45.000 0.00 0.00 0.00 2.57
2628 3009 2.677836 TCAACAATCGTAGCAGGCATTC 59.322 45.455 0.00 0.00 0.00 2.67
2629 3010 2.710377 TCAACAATCGTAGCAGGCATT 58.290 42.857 0.00 0.00 0.00 3.56
2630 3011 2.401583 TCAACAATCGTAGCAGGCAT 57.598 45.000 0.00 0.00 0.00 4.40
2631 3012 2.076100 CTTCAACAATCGTAGCAGGCA 58.924 47.619 0.00 0.00 0.00 4.75
2637 3018 2.422597 TGGGCACTTCAACAATCGTAG 58.577 47.619 0.00 0.00 0.00 3.51
2641 3022 4.255833 TGAAATGGGCACTTCAACAATC 57.744 40.909 0.00 0.00 0.00 2.67
2647 3028 2.827322 CCTGATTGAAATGGGCACTTCA 59.173 45.455 0.00 0.00 0.00 3.02
2648 3029 3.091545 TCCTGATTGAAATGGGCACTTC 58.908 45.455 0.00 0.00 0.00 3.01
2659 3040 9.312904 AGAAAAGGAACATAAATCCTGATTGAA 57.687 29.630 0.00 0.00 46.65 2.69
2664 3045 6.472887 ACGAGAAAAGGAACATAAATCCTGA 58.527 36.000 0.00 0.00 46.65 3.86
2696 3077 1.921748 AGGACGGAGGGAGTAGTTAGT 59.078 52.381 0.00 0.00 0.00 2.24
2697 3078 2.732844 AGGACGGAGGGAGTAGTTAG 57.267 55.000 0.00 0.00 0.00 2.34
2698 3079 4.591321 TTAAGGACGGAGGGAGTAGTTA 57.409 45.455 0.00 0.00 0.00 2.24
2699 3080 3.463048 TTAAGGACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
2700 3081 3.463048 TTTAAGGACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
2701 3082 5.597594 ACTTATTTAAGGACGGAGGGAGTAG 59.402 44.000 2.63 0.00 37.62 2.57
2702 3083 5.361857 CACTTATTTAAGGACGGAGGGAGTA 59.638 44.000 2.63 0.00 37.62 2.59
2703 3084 4.161754 CACTTATTTAAGGACGGAGGGAGT 59.838 45.833 2.63 0.00 37.62 3.85
2704 3085 4.161754 ACACTTATTTAAGGACGGAGGGAG 59.838 45.833 2.63 0.00 37.62 4.30
2705 3086 4.098894 ACACTTATTTAAGGACGGAGGGA 58.901 43.478 2.63 0.00 37.62 4.20
2706 3087 4.482952 ACACTTATTTAAGGACGGAGGG 57.517 45.455 2.63 0.00 37.62 4.30
2707 3088 8.502105 AAATAACACTTATTTAAGGACGGAGG 57.498 34.615 2.63 0.00 42.39 4.30
2708 3089 9.769093 CAAAATAACACTTATTTAAGGACGGAG 57.231 33.333 2.63 0.00 43.14 4.63
2709 3090 8.732531 CCAAAATAACACTTATTTAAGGACGGA 58.267 33.333 10.51 0.00 43.14 4.69
2710 3091 7.971722 CCCAAAATAACACTTATTTAAGGACGG 59.028 37.037 14.51 0.00 43.14 4.79
2711 3092 8.732531 TCCCAAAATAACACTTATTTAAGGACG 58.267 33.333 14.51 0.00 43.14 4.79
2712 3093 9.850628 GTCCCAAAATAACACTTATTTAAGGAC 57.149 33.333 20.10 20.10 46.58 3.85
2713 3094 8.732531 CGTCCCAAAATAACACTTATTTAAGGA 58.267 33.333 14.51 12.83 43.14 3.36
2714 3095 7.971722 CCGTCCCAAAATAACACTTATTTAAGG 59.028 37.037 2.63 6.29 43.14 2.69
2715 3096 8.732531 TCCGTCCCAAAATAACACTTATTTAAG 58.267 33.333 1.37 0.00 43.14 1.85
2716 3097 8.632906 TCCGTCCCAAAATAACACTTATTTAA 57.367 30.769 1.37 0.00 43.14 1.52
2717 3098 8.679100 CATCCGTCCCAAAATAACACTTATTTA 58.321 33.333 1.37 0.00 43.14 1.40
2718 3099 7.363443 CCATCCGTCCCAAAATAACACTTATTT 60.363 37.037 0.00 0.00 45.18 1.40
2719 3100 6.096282 CCATCCGTCCCAAAATAACACTTATT 59.904 38.462 0.00 0.00 37.43 1.40
2720 3101 5.592688 CCATCCGTCCCAAAATAACACTTAT 59.407 40.000 0.00 0.00 0.00 1.73
2721 3102 4.944930 CCATCCGTCCCAAAATAACACTTA 59.055 41.667 0.00 0.00 0.00 2.24
2722 3103 3.761752 CCATCCGTCCCAAAATAACACTT 59.238 43.478 0.00 0.00 0.00 3.16
2723 3104 3.009695 TCCATCCGTCCCAAAATAACACT 59.990 43.478 0.00 0.00 0.00 3.55
2724 3105 3.349022 TCCATCCGTCCCAAAATAACAC 58.651 45.455 0.00 0.00 0.00 3.32
2725 3106 3.009695 ACTCCATCCGTCCCAAAATAACA 59.990 43.478 0.00 0.00 0.00 2.41
2726 3107 3.617284 ACTCCATCCGTCCCAAAATAAC 58.383 45.455 0.00 0.00 0.00 1.89
2727 3108 5.640158 ATACTCCATCCGTCCCAAAATAA 57.360 39.130 0.00 0.00 0.00 1.40
2728 3109 5.640158 AATACTCCATCCGTCCCAAAATA 57.360 39.130 0.00 0.00 0.00 1.40
2729 3110 4.519906 AATACTCCATCCGTCCCAAAAT 57.480 40.909 0.00 0.00 0.00 1.82
2730 3111 4.472108 AGTAATACTCCATCCGTCCCAAAA 59.528 41.667 0.00 0.00 0.00 2.44
2731 3112 4.035112 AGTAATACTCCATCCGTCCCAAA 58.965 43.478 0.00 0.00 0.00 3.28
2732 3113 3.649843 AGTAATACTCCATCCGTCCCAA 58.350 45.455 0.00 0.00 0.00 4.12
2733 3114 3.323774 AGTAATACTCCATCCGTCCCA 57.676 47.619 0.00 0.00 0.00 4.37
2734 3115 3.305199 CGAAGTAATACTCCATCCGTCCC 60.305 52.174 0.00 0.00 0.00 4.46
2735 3116 3.305199 CCGAAGTAATACTCCATCCGTCC 60.305 52.174 0.00 0.00 0.00 4.79
2736 3117 3.856267 GCCGAAGTAATACTCCATCCGTC 60.856 52.174 0.00 0.00 0.00 4.79
2737 3118 2.035576 GCCGAAGTAATACTCCATCCGT 59.964 50.000 0.00 0.00 0.00 4.69
2738 3119 2.035449 TGCCGAAGTAATACTCCATCCG 59.965 50.000 0.00 0.00 0.00 4.18
2739 3120 3.746045 TGCCGAAGTAATACTCCATCC 57.254 47.619 0.00 0.00 0.00 3.51
2740 3121 5.758296 TCATTTGCCGAAGTAATACTCCATC 59.242 40.000 0.00 0.00 0.00 3.51
2744 3125 5.116882 ACCTCATTTGCCGAAGTAATACTC 58.883 41.667 0.00 0.00 0.00 2.59
2746 3127 5.585047 AGAACCTCATTTGCCGAAGTAATAC 59.415 40.000 0.00 0.00 0.00 1.89
2756 3137 2.087646 GAGTCCAGAACCTCATTTGCC 58.912 52.381 0.00 0.00 0.00 4.52
2757 3138 2.746362 CAGAGTCCAGAACCTCATTTGC 59.254 50.000 0.00 0.00 0.00 3.68
2765 3146 1.149148 GCGTTTCAGAGTCCAGAACC 58.851 55.000 0.00 0.00 0.00 3.62
2785 3166 2.791560 CGACATTCGTATCAGGCTTCAG 59.208 50.000 0.00 0.00 34.72 3.02
2799 3180 3.781079 TGAAATGGGCAATCGACATTC 57.219 42.857 0.00 0.00 34.00 2.67
2808 3189 2.971330 ACATCCTGTTTGAAATGGGCAA 59.029 40.909 0.00 0.00 0.00 4.52
2898 3282 5.766150 TGTGGGAATGTCAAAGTAAAGTG 57.234 39.130 0.00 0.00 0.00 3.16
2908 3292 6.840527 ACATATACATCATGTGGGAATGTCA 58.159 36.000 0.00 0.00 35.33 3.58
3040 3424 3.277715 GCCAATCTCTTCTCCTTTCTGG 58.722 50.000 0.00 0.00 37.10 3.86
3056 3440 1.279846 CCATTTTGGAGCAAGGCCAAT 59.720 47.619 5.01 0.00 44.30 3.16
3057 3441 0.686224 CCATTTTGGAGCAAGGCCAA 59.314 50.000 5.01 0.00 40.96 4.52
3160 3544 1.686587 TCAGACAAAGCAGAAGACCGA 59.313 47.619 0.00 0.00 0.00 4.69
3172 3556 7.070074 GGTCTTAGGAGGATAAGATCAGACAAA 59.930 40.741 0.00 0.00 42.25 2.83
3250 3634 4.402793 TGTAGGTCTCTCTTGATTGTAGGC 59.597 45.833 0.00 0.00 0.00 3.93
3259 3643 2.712709 TCGTCCTGTAGGTCTCTCTTG 58.287 52.381 0.00 0.00 36.34 3.02
3262 3646 3.202829 AGATCGTCCTGTAGGTCTCTC 57.797 52.381 0.00 0.00 36.34 3.20
3325 3709 4.745549 GCTTCTAAAGCGCCAACG 57.254 55.556 2.29 0.00 45.74 4.10
3469 3853 3.146104 ACAGAAGGTGGATTGAACAGG 57.854 47.619 0.00 0.00 0.00 4.00
3590 3974 1.542492 CTGCCCTCATCTTTTGCACT 58.458 50.000 0.00 0.00 0.00 4.40
3625 4009 1.061570 CCATTTCTTCTCTGCGCGC 59.938 57.895 27.26 27.26 0.00 6.86
3721 4105 1.589993 CTGCTGCTCATCCGTACCG 60.590 63.158 0.00 0.00 0.00 4.02
3725 4109 2.125229 CTGCTGCTGCTCATCCGT 60.125 61.111 17.00 0.00 40.48 4.69
4024 4412 2.031120 CCATGGCCATAACGGAACATT 58.969 47.619 20.30 0.00 36.56 2.71
4030 4418 0.462937 TTCGACCATGGCCATAACGG 60.463 55.000 20.30 18.41 38.11 4.44
4271 4922 5.649395 TCATGCTACATTCCCTCAAGAAAAG 59.351 40.000 0.00 0.00 0.00 2.27
4272 4923 5.415701 GTCATGCTACATTCCCTCAAGAAAA 59.584 40.000 0.00 0.00 0.00 2.29
4276 4927 3.877559 TGTCATGCTACATTCCCTCAAG 58.122 45.455 0.00 0.00 0.00 3.02
4578 5229 2.458951 TGTCAGCAACACGCAAATTTC 58.541 42.857 0.00 0.00 46.13 2.17
4587 5238 4.676924 GCATAAGTTCTTTGTCAGCAACAC 59.323 41.667 0.00 0.00 37.70 3.32
4588 5239 4.337836 TGCATAAGTTCTTTGTCAGCAACA 59.662 37.500 0.00 0.00 33.82 3.33
4821 7878 3.630625 AGGGGACTGTACCTATGCATA 57.369 47.619 9.36 6.20 41.13 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.